substitution minor allele frequency (MAF) submission details id snp id gene locuslink id chromosome chromosome coordinate mRNA accession protein accession nucleotide amino acid UCSC strand subsnp id population id population handle local population id population description total chromosomes genotyped MAF update build validation criteria cytogenic gene description 1 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 3173350 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 112 0.02 123 "by cluster,freq" 8p22 lipoprotein lipase 2 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 4921960 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.14 123 "by cluster,freq" 8p22 lipoprotein lipase 3 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 10467174 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by cluster,freq" 8p22 lipoprotein lipase 4 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 24648907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "by cluster,freq" 8p22 lipoprotein lipase 5 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 24648907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 8p22 lipoprotein lipase 6 rs328 LPL 4023 8 19864004 NM_000237 NP_000228 C/G S474X plus 24648907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 8p22 lipoprotein lipase 7 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 667 506 NCBI NIHPDR NIHPDR 180 0.48 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 8 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 4573 490 HU-CHINA HAN Chinese 4000 0.4 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 9 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 4573 491 HU-CHINA CAU "Australian, Belgian, Canadian, English, Finnish, French, German and USA" 460 0.33 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 10 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5111592 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.33 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 11 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5111592 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.17 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 12 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5111592 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 13 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5586846 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.49 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 14 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5586846 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.27 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 15 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5586846 776 SNP500CANCER AFR1 African / African-American (24) 48 0.37 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 16 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5586846 777 SNP500CANCER HISP1 Hispanic (23) 46 0.48 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 17 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 5586846 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.37 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 18 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 16338591 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 56 0.34 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 19 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 24194186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 20 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 24194186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 21 rs662 PON1 5444 7 94582097 NM_000446 NP_000437 A/G Q192R minus 24194186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by submitter,freq,cluster" 7q21.3 paraoxonase 1 22 rs665 FUCA1 2517 1 23926347 NM_000147 NP_000138 A/G V255I minus 670 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 36 HapMap 1p34 "fucosidase, alpha-L- 1, tissue" 23 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 3177110 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.06 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 24 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 5586234 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.04 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 25 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 5586234 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 26 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 5586234 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 27 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 5586234 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 28 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 5586234 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.17 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 29 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 6396276 821 KIDDLAB PO000009J 96 0.27 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 30 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 23975064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 31 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 23975064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 32 rs671 ALDH2 217 12 110704486 NM_000690 NP_000681 A/G E504K plus 23975064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 12q24.2 aldehyde dehydrogenase 2 family (mitochondrial) 33 rs678 ITIH1 3697 3 52796021 NM_002215 NP_002206 A/T E585V plus 21978763 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by cluster,freq" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 34 rs678 ITIH1 3697 3 52796021 NM_002215 NP_002206 A/T E585V plus 24349616 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by cluster,freq" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 35 rs678 ITIH1 3697 3 52796021 NM_002215 NP_002206 A/T E585V plus 24349616 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 36 rs678 ITIH1 3697 3 52796021 NM_002215 NP_002206 A/T E585V plus 24349616 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 37 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 6484 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 38 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 11901 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 39 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 3240877 738 YUSUKE JBIC-ALLELE Japanese (752) 1064 0.19 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 40 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 16338660 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 41 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 16338962 1122 PARC PARC-AFRICAN-PANEL CORIELL African-American (24) 48 0.17 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 42 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 16338962 1123 PARC PARC-EUROPEAN-PANEL CEPH (23) 4 0.25 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 43 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 16338962 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 44 rs699 AGT 183 1 227152529 NM_000029 NP_000020 C/T M268T minus 20420720 889 PHARMGKB_PARC PA128275074 94 0.35 123 "by doubleHit,freq,cluster" 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 45 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 8443 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.48 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 46 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 1352184 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.19 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 47 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 1352184 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.45 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 48 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 3172312 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.48 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 49 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 3172312 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.43 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 50 rs704 VTN 7448 17 23718988 NM_000638 NP_000629 C/T T400M minus 3172312 1303 SEQUENOM CEPH CEPH (92) 91 0.47 121 "by doubleHit,freq,cluster" 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 51 rs1124 SFTPC 6440 8 22077462 NM_003018 NP_003009 A/G S186N plus 9612 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 120 "by doubleHit,freq,cluster" 8p21 "surfactant, pulmonary-associated protein C" 52 rs1124 SFTPC 6440 8 22077462 NM_003018 NP_003009 A/G S186N plus 3194963 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.31 120 "by doubleHit,freq,cluster" 8p21 "surfactant, pulmonary-associated protein C" 53 rs1124 SFTPC 6440 8 22077462 NM_003018 NP_003009 A/G S186N plus 12586539 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 120 "by doubleHit,freq,cluster" 8p21 "surfactant, pulmonary-associated protein C" 54 rs1124 SFTPC 6440 8 22077462 NM_003018 NP_003009 A/G S186N plus 12586539 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.22 120 "by doubleHit,freq,cluster" 8p21 "surfactant, pulmonary-associated protein C" 55 rs1124 SFTPC 6440 8 22077462 NM_003018 NP_003009 A/G S186N plus 12586539 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 "by doubleHit,freq,cluster" 8p21 "surfactant, pulmonary-associated protein C" 56 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 1233 604 KWOK HydatidiformMoles 10 0.4 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 57 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 2323986 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.02 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 58 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 2323986 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.29 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 59 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 2323986 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 60 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 5586793 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.37 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 61 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 5586793 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.4 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 62 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 5586793 776 SNP500CANCER AFR1 African / African-American (24) 24 0.5 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 63 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 5586793 777 SNP500CANCER HISP1 Hispanic (23) 46 0.48 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 64 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 5586793 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.09 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 65 rs1208 NAT2 10 8 18302596 NM_000015 NP_000006 A/G R268K plus 24796685 1303 SEQUENOM CEPH CEPH (92) 184 0.35 123 "by doubleHit,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 66 rs1258 TAF1L 138474 9 32623119 NM_153809 NP_722516 A/G M820T plus 24810791 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by cluster,freq" 9p13.3 "TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa" 67 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 1328 604 KWOK HydatidiformMoles 10 0.4 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 68 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 8326 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 69 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 20190 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 70 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 2987614 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.28 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 71 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 16651029 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 72 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 24129831 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 73 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 24129831 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 74 rs1303 SERPINA1 5265 14 93914596 NM_000295 NP_000286 G/T E400D plus 24129831 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 75 rs1320 VPREB1 7441 22 20924091 NM_007128 NP_009059 A/G D76N plus 16359757 649 FHCRC POPU1 USA (20) 40 0.05 123 "by cluster,freq" 22q11.22 pre-B lymphocyte gene 1 76 rs1320 VPREB1 7441 22 20924091 NM_007128 NP_009059 A/G D76N plus 16359757 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 22q11.22 pre-B lymphocyte gene 1 77 rs1320 VPREB1 7441 22 20924091 NM_007128 NP_009059 A/G D76N plus 24561156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 22q11.22 pre-B lymphocyte gene 1 78 rs1320 VPREB1 7441 22 20924091 NM_007128 NP_009059 A/G D76N plus 24561156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 22q11.22 pre-B lymphocyte gene 1 79 rs1320 VPREB1 7441 22 20924091 NM_007128 NP_009059 A/G D76N plus 24561156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q11.22 pre-B lymphocyte gene 1 80 rs1395 SLC5A6 8884 2 27336287 NM_021095 NP_066918 A/G S481F plus 1420 604 KWOK HydatidiformMoles 10 0.2 123 "by doubleHit,freq,cluster" 2p23 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" 81 rs1395 SLC5A6 8884 2 27336287 NM_021095 NP_066918 A/G S481F plus 1468894 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 2p23 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" 82 rs1395 SLC5A6 8884 2 27336287 NM_021095 NP_066918 A/G S481F plus 23191420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 2p23 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" 83 rs1395 SLC5A6 8884 2 27336287 NM_021095 NP_066918 A/G S481F plus 23191420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2p23 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" 84 rs1395 SLC5A6 8884 2 27336287 NM_021095 NP_066918 A/G S481F plus 23191420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 2p23 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" 85 rs1545 MKKS 8195 20 10334013 NM_018848 NP_061336 A/C G532V plus 3238466 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.26 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 86 rs1545 MKKS 8195 20 10334013 NM_170784 NP_740754 A/C G532V plus 3238466 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.26 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 87 rs1547 MKKS 8195 20 10334059 NM_018848 NP_061336 A/G R517C plus 1572 604 KWOK HydatidiformMoles 10 0.2 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 88 rs1547 MKKS 8195 20 10334059 NM_018848 NP_061336 A/G R517C plus 3238465 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.27 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 89 rs1547 MKKS 8195 20 10334059 NM_018848 NP_061336 A/G R517C plus 8435145 1303 SEQUENOM CEPH CEPH (92) 92 0.23 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 90 rs1547 MKKS 8195 20 10334059 NM_170784 NP_740754 A/G R517C plus 1572 604 KWOK HydatidiformMoles 10 0.2 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 91 rs1547 MKKS 8195 20 10334059 NM_170784 NP_740754 A/G R517C plus 3238465 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.27 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 92 rs1547 MKKS 8195 20 10334059 NM_170784 NP_740754 A/G R517C plus 8435145 1303 SEQUENOM CEPH CEPH (92) 92 0.23 120 "by doubleHit,freq,cluster" 20p12 McKusick-Kaufman syndrome 93 rs1567 NCOA7 135112 6 126291607 NM_181782 NP_861447 G/T D942E plus 1592 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 119 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33 nuclear receptor coactivator 7 94 rs1567 NCOA7 135112 6 126291607 NM_181782 NP_861447 G/T D942E plus 13120002 1303 SEQUENOM CEPH CEPH (92) 92 0.09 119 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33 nuclear receptor coactivator 7 95 rs1666 FANK1 92565 10 127687944 NM_145235 NP_660278 A/C L329V minus 1691 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 96 rs1666 FANK1 92565 10 127687944 NM_145235 NP_660278 A/C L329V minus 24588815 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 97 rs1666 FANK1 92565 10 127687944 NM_145235 NP_660278 A/C L329V minus 24588815 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 98 rs1666 FANK1 92565 10 127687944 NM_145235 NP_660278 A/C L329V minus 24588815 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 99 rs1666 FANK1 92565 10 127687944 NM_145235 NP_660278 A/C L329V minus 28447400 914 HG_BONN_CNS_SNPS EURO96 European 190 0.03 123 "by cluster,freq" 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 100 rs1716 ITGAE 3682 17 3579585 NM_002208 NP_002199 C/T R950W minus 21376295 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by submitter,freq,cluster" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 101 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 1752 604 KWOK HydatidiformMoles 10 1 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 102 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 901 AFFY AfAm 40 0.05 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 103 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 902 AFFY Caucasian 40 0.1 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 104 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 903 AFFY Asian 40 0.03 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 105 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 904 AFFY CEPH 44 0.32 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 106 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 905 AFFY PDpanel 48 0.21 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 107 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 2213985 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 108 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 24546708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 109 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 24546708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 110 rs1727 IFIT2 3433 10 91056749 NM_001547 NP_001538 A/C D352E plus 24546708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 111 rs1811 ZNF30 90075 19 40126078 NM_194325 NP_919306 A/G Q42R plus 1836 604 KWOK HydatidiformMoles 10 0.4 120 "by doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 112 rs1818 NCOA6IP 96764 8 56848778 NM_024831 NP_079107 C/T I16T plus 2954714 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 113 rs1818 NCOA6IP 96764 8 56848778 NM_024831 NP_079107 C/T I16T plus 2954714 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 114 rs1818 NCOA6IP 96764 8 56848778 NM_024831 NP_079107 C/T I16T plus 23573057 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 115 rs1818 NCOA6IP 96764 8 56848778 NM_024831 NP_079107 C/T I16T plus 23573057 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 116 rs1818 NCOA6IP 96764 8 56848778 NM_024831 NP_079107 C/T I16T plus 23573057 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 117 rs1899 NDUFAF1 51103 15 39476524 NM_016013 NP_057097 A/G R9H minus 1924 604 KWOK HydatidiformMoles 10 0.2 120 "HapMap,submitter,freq,cluster" 15q11.2-q21.3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" 118 rs1899 NDUFAF1 51103 15 39476524 NM_016013 NP_057097 A/G R9H minus 1924 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,submitter,freq,cluster" 15q11.2-q21.3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" 119 rs1899 NDUFAF1 51103 15 39476524 NM_016013 NP_057097 A/G R9H minus 17538177 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 "HapMap,submitter,freq,cluster" 15q11.2-q21.3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" 120 rs1921 G1P2 9636 1 989675 NM_005101 NP_005092 A/G S83N plus 1946 604 KWOK HydatidiformMoles 10 0.2 123 "by cluster,freq" 1p36.33 "interferon, alpha-inducible protein (clone IFI-15K)" 121 rs1921 G1P2 9636 1 989675 NM_005101 NP_005092 A/G S83N plus 24810939 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 "by cluster,freq" 1p36.33 "interferon, alpha-inducible protein (clone IFI-15K)" 122 rs1989 TM6SF1 53346 15 81572635 NM_023003 NP_075379 C/T P59S plus 2015 604 KWOK HydatidiformMoles 10 0.4 123 "HapMap,submitter,freq,cluster" 15q24-q26 transmembrane 6 superfamily member 1 123 rs1989 TM6SF1 53346 15 81572635 NM_023003 NP_075379 C/T P59S plus 2015 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 15q24-q26 transmembrane 6 superfamily member 1 124 rs1989 TM6SF1 53346 15 81572635 NM_023003 NP_075379 C/T P59S plus 2015 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,submitter,freq,cluster" 15q24-q26 transmembrane 6 superfamily member 1 125 rs1989 TM6SF1 53346 15 81572635 NM_023003 NP_075379 C/T P59S plus 24796501 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 "HapMap,submitter,freq,cluster" 15q24-q26 transmembrane 6 superfamily member 1 126 rs2240 MKI67 4288 10 129797534 NM_002417 NP_002408 C/G L854V plus 2266 604 KWOK HydatidiformMoles 10 0.4 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 127 rs2240 MKI67 4288 10 129797534 NM_002417 NP_002408 C/G L854V plus 2960666 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 128 rs2240 MKI67 4288 10 129797534 NM_002417 NP_002408 C/G L854V plus 23644026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 129 rs2240 MKI67 4288 10 129797534 NM_002417 NP_002408 C/G L854V plus 23644026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 130 rs2240 MKI67 4288 10 129797534 NM_002417 NP_002408 C/G L854V plus 23644026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 131 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 2375 604 KWOK HydatidiformMoles 10 1 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 132 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 2375 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 133 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 2375 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 134 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 24569247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 135 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 24569247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 136 rs2347 POLR3E 55718 16 22227018 NM_018119 NP_060589 A/C S46A minus 24569247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,submitter,freq" 16p12.3 polymerase (RNA) III (DNA directed) polypeptide E (80kD) 137 rs2461 PABPC3 5042 13 24568988 NM_030979 NP_112241 G/T L218V plus 24796454 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 "by cluster,freq" 13q12-q13 "poly(A) binding protein, cytoplasmic 3" 138 rs2461 PABPC3 5042 13 24568988 NM_030979 NP_112241 G/T L218V plus 24804335 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 13q12-q13 "poly(A) binding protein, cytoplasmic 3" 139 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 2670 604 KWOK HydatidiformMoles 10 1 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 140 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 2670 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.03 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 141 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 2670 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 142 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 4551 490 HU-CHINA HAN Chinese 4000 0.33 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 143 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 4551 491 HU-CHINA CAU "Australian, Belgian, Canadian, English, Finnish, French, German and USA" 460 0.11 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 144 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 16336055 901 AFFY AfAm 12 1 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 145 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 16336055 902 AFFY Caucasian 22 0.09 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 146 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 16336055 903 AFFY Asian 10 0.2 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 147 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 16336055 904 AFFY CEPH 12 1 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 148 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 16336055 905 AFFY PDpanel 48 0.04 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 149 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 23989050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 150 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 23989050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 151 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 23989050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 152 rs2640 HRI 27102 7 5839691 NM_014413 NP_055228 C/T K558R plus 24796328 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 "HapMap,freq,cluster" 7p22 heme-regulated initiation factor 2-alpha kinase 153 rs2759 MPO 4353 17 53703105 NM_000250 NP_000241 A/G I717V minus 2789 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q23.1 myeloperoxidase 154 rs2759 MPO 4353 17 53703105 NM_000250 NP_000241 A/G I717V minus 16338615 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 16 0.06 123 "by cluster,freq" 17q23.1 myeloperoxidase 155 rs2759 MPO 4353 17 53703105 NM_000250 NP_000241 A/G I717V minus 23791841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 17q23.1 myeloperoxidase 156 rs2759 MPO 4353 17 53703105 NM_000250 NP_000241 A/G I717V minus 23791841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q23.1 myeloperoxidase 157 rs2759 MPO 4353 17 53703105 NM_000250 NP_000241 A/G I717V minus 23791841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q23.1 myeloperoxidase 158 rs2791 TRAP1 10131 16 3648171 NM_016292 NP_057376 C/T R692H plus 2821 604 KWOK HydatidiformMoles 10 1 123 "by cluster,freq" 16p13.3 heat shock protein 75 159 rs2791 TRAP1 10131 16 3648171 NM_016292 NP_057376 C/T R692H plus 2821 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by cluster,freq" 16p13.3 heat shock protein 75 160 rs2791 TRAP1 10131 16 3648171 NM_016292 NP_057376 C/T R692H plus 24709278 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 16p13.3 heat shock protein 75 161 rs2791 TRAP1 10131 16 3648171 NM_016292 NP_057376 C/T R692H plus 24709278 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16p13.3 heat shock protein 75 162 rs2791 TRAP1 10131 16 3648171 NM_016292 NP_057376 C/T R692H plus 24709278 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p13.3 heat shock protein 75 163 rs2941 GRM1 2911 6 146796825 NM_000838 NP_000829 A/G V929I plus 2972 549 KYUGEN CP CEPH (78) 156 0.11 123 "by cluster,freq" 6q24 "glutamate receptor, metabotropic 1" 164 rs2941 GRM1 2911 6 146796825 NM_000838 NP_000829 A/G V929I plus 2972 550 KYUGEN JF Japanese (53) 106 1 123 "by cluster,freq" 6q24 "glutamate receptor, metabotropic 1" 165 rs2941 GRM1 2911 6 146796825 NM_000838 NP_000829 A/G V929I plus 14796794 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by cluster,freq" 6q24 "glutamate receptor, metabotropic 1" 166 rs2941 GRM1 2911 6 146796825 NM_000838 NP_000829 A/G V929I plus 24796320 1303 SEQUENOM CEPH CEPH (92) 184 0.09 123 "by cluster,freq" 6q24 "glutamate receptor, metabotropic 1" 167 rs3027 COG8 84342 16 67924150 NM_032382 NP_115758 A/C L517R plus 3058 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 36 HapMap 16q22.1 component of oligomeric golgi complex 8 168 rs3027 COG8 84342 16 67924150 NM_032382 NP_115758 A/C L517R plus 3058 1303 SEQUENOM CEPH CEPH (92) 92 1 36 HapMap 16q22.1 component of oligomeric golgi complex 8 169 rs3085 CR1L 1379 1 204245649 XM_114735 XP_114735 C/T I139V minus 3116 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 120 "HapMap,submitter,freq,cluster" 1q32.1 complement component (3b/4b) receptor 1-like 170 rs3085 CR1L 1379 1 204245649 XM_114735 XP_114735 C/T I139V minus 16458514 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "HapMap,submitter,freq,cluster" 1q32.1 complement component (3b/4b) receptor 1-like 171 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 3464 604 KWOK HydatidiformMoles 10 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 172 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 3464 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 173 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 3464 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 174 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 24373978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 175 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 24373978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 176 rs3429 CCDC2 80173 9 27052721 NM_025103 NP_079379 A/G T432I minus 24373978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 9p21.1 coiled-coil domain containing 2 177 rs3501 PAXIP1L 22976 7 154176057 NM_007349 NP_031375 A/G M979V minus 3536 604 KWOK HydatidiformMoles 10 0.4 100 "HapMap,submitter,freq,cluster" 7q36 PAX transcription activation domain interacting protein 1 like 178 rs3501 PAXIP1L 22976 7 154176057 NM_007349 NP_031375 A/G M979V minus 3536 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 100 "HapMap,submitter,freq,cluster" 7q36 PAX transcription activation domain interacting protein 1 like 179 rs3501 PAXIP1L 22976 7 154176057 NM_007349 NP_031375 A/G M979V minus 3536 1303 SEQUENOM CEPH CEPH (92) 92 0.26 100 "HapMap,submitter,freq,cluster" 7q36 PAX transcription activation domain interacting protein 1 like 180 rs3575 LDHB 3945 12 21679867 NM_002300 NP_002291 C/T C294Y plus 24811306 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 "by cluster,freq" 12p12.2-p12.1 lactate dehydrogenase B 181 rs3625 JDP2 122953 14 74974413 NM_130469 NP_569736 A/G T13A plus 10757052 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 14q24.3 jun dimerization protein 2 182 rs3625 JDP2 122953 14 74974413 NM_130469 NP_569736 A/G T13A plus 24606853 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 14q24.3 jun dimerization protein 2 183 rs3625 JDP2 122953 14 74974413 NM_130469 NP_569736 A/G T13A plus 24606853 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 14q24.3 jun dimerization protein 2 184 rs3625 JDP2 122953 14 74974413 NM_130469 NP_569736 A/G T13A plus 24606853 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 14q24.3 jun dimerization protein 2 185 rs4220 FGB 2244 4 155849364 NM_005141 NP_005132 A/G R478K plus 7674 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.33 120 "by doubleHit,freq,cluster" 4q28 "fibrinogen, B beta polypeptide" 186 rs4220 FGB 2244 4 155849364 NM_005141 NP_005132 A/G R478K plus 3171963 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 120 "by doubleHit,freq,cluster" 4q28 "fibrinogen, B beta polypeptide" 187 rs4220 FGB 2244 4 155849364 NM_005141 NP_005132 A/G R478K plus 3171963 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.2 120 "by doubleHit,freq,cluster" 4q28 "fibrinogen, B beta polypeptide" 188 rs4220 FGB 2244 4 155849364 NM_005141 NP_005132 A/G R478K plus 3171963 1303 SEQUENOM CEPH CEPH (92) 92 0.28 120 "by doubleHit,freq,cluster" 4q28 "fibrinogen, B beta polypeptide" 189 rs4220 FGB 2244 4 155849364 NM_005141 NP_005132 A/G R478K plus 3249988 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 120 "by doubleHit,freq,cluster" 4q28 "fibrinogen, B beta polypeptide" 190 rs4236 MGP 4256 12 14926348 NM_000900 NP_000891 A/G T102A minus 9261 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.45 123 "HapMap,doubleHit,freq,cluster" 12p13.1-p12.3 matrix Gla protein 191 rs4236 MGP 4256 12 14926348 NM_000900 NP_000891 A/G T102A minus 3176882 619 WICVAR MITOGPOP6 CORIELL Mixed 10 0.3 123 "HapMap,doubleHit,freq,cluster" 12p13.1-p12.3 matrix Gla protein 192 rs4236 MGP 4256 12 14926348 NM_000900 NP_000891 A/G T102A minus 3405897 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.36 123 "HapMap,doubleHit,freq,cluster" 12p13.1-p12.3 matrix Gla protein 193 rs4236 MGP 4256 12 14926348 NM_000900 NP_000891 A/G T102A minus 3405897 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,freq,cluster" 12p13.1-p12.3 matrix Gla protein 194 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 3 KWOK C USA Caucasian (30) 60 0.05 36 HapMap 22q12.1 "crystallin, beta A4" 195 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 4 KWOK H USA Hispanic (30) 60 0.05 36 HapMap 22q12.1 "crystallin, beta A4" 196 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 5 KWOK B USA African-American (30) 60 0.05 36 HapMap 22q12.1 "crystallin, beta A4" 197 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 7 KWOK A Chinese (30) 60 0.05 36 HapMap 22q12.1 "crystallin, beta A4" 198 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 36 HapMap 22q12.1 "crystallin, beta A4" 199 rs4277 CRYBA4 1413 22 25346091 NM_001886 NP_001877 C/T T84M plus 4652 1303 SEQUENOM CEPH CEPH (92) 93 0.03 36 HapMap 22q12.1 "crystallin, beta A4" 200 rs4303 ACE 1636 17 58911555 NM_000789 NP_000780 G/T A261S plus 4692 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 201 rs4303 ACE 1636 17 58911555 NM_000789 NP_000780 G/T A261S plus 20418732 889 PHARMGKB_PARC PA128275074 92 0.03 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 202 rs4317 ACE 1636 17 58916054 NM_152830 NP_690043 C/T S32P plus 6407 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.25 52 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 203 rs4317 ACE 1636 17 58916054 NM_152830 NP_690043 C/T S32P plus 6407 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 204 rs4317 ACE 1636 17 58916054 NM_152831 NP_690044 C/T S32P plus 6407 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.25 52 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 205 rs4317 ACE 1636 17 58916054 NM_152831 NP_690044 C/T S32P plus 6407 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 206 rs4364 ACE 1636 17 58928394 NM_000789 NP_000780 A/C R1286S plus 6418 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 207 rs4364 ACE 1636 17 58928394 NM_000789 NP_000780 A/C R1286S plus 20418774 889 PHARMGKB_PARC PA128275074 94 0.07 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 208 rs4364 ACE 1636 17 58928394 NM_000789 NP_000780 A/C R1286S plus 20418774 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 209 rs4364 ACE 1636 17 58928394 NM_152830 NP_690043 A/C R712S plus 6418 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 210 rs4364 ACE 1636 17 58928394 NM_152830 NP_690043 A/C R712S plus 20418774 889 PHARMGKB_PARC PA128275074 94 0.07 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 211 rs4364 ACE 1636 17 58928394 NM_152830 NP_690043 A/C R712S plus 20418774 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 212 rs4524 F5 2153 1 166243413 NM_000130 NP_000121 A/G K858R minus 7631 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.33 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 213 rs4524 F5 2153 1 166243413 NM_000130 NP_000121 A/G K858R minus 3195262 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.21 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 214 rs4524 F5 2153 1 166243413 NM_000130 NP_000121 A/G K858R minus 12674294 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.27 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 215 rs4524 F5 2153 1 166243413 NM_000130 NP_000121 A/G K858R minus 12674294 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.21 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 216 rs4524 F5 2153 1 166243413 NM_000130 NP_000121 A/G K858R minus 12674294 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 217 rs4525 F5 2153 1 166243392 NM_000130 NP_000121 A/G H865R minus 7635 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.33 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 218 rs4525 F5 2153 1 166243392 NM_000130 NP_000121 A/G H865R minus 3195261 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.24 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 219 rs4525 F5 2153 1 166243392 NM_000130 NP_000121 A/G H865R minus 12674295 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.27 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 220 rs4525 F5 2153 1 166243392 NM_000130 NP_000121 A/G H865R minus 12674295 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.21 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 221 rs4525 F5 2153 1 166243392 NM_000130 NP_000121 A/G H865R minus 12674295 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 222 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 7234 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 223 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 7757 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 224 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 7757 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 225 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 23537402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 226 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 23537402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 227 rs4526 TBXAS1 6916 7 139168765 NM_001061 NP_001052 A/G A430T plus 23537402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 228 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 7234 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 229 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 7757 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 230 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 7757 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 231 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 23537402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 232 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 23537402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 233 rs4526 TBXAS1 6916 7 139168765 NM_030984 NP_112246 A/G A430T plus 23537402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 234 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 7245 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 235 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 7761 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 236 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 7761 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 237 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 7761 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 238 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 23536737 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 239 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 23536737 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 240 rs4529 TBXAS1 6916 7 139115148 NM_001061 NP_001052 C/G L357V plus 23536737 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 241 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 7245 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 242 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 7761 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 243 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 7761 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 244 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 7761 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 245 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 23536737 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 246 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 23536737 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 247 rs4529 TBXAS1 6916 7 139115148 NM_030984 NP_112246 C/G L357V plus 23536737 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 248 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 6429 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 249 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 7888 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 250 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 7888 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 251 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 7888 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 252 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 23584256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 253 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 23584256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 254 rs4530 ADORA2A 135 22 23154075 NM_000675 NP_000666 C/T A50V plus 23584256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 22q11.23 adenosine A2a receptor 255 rs4531 DBH 1621 9 133538924 NM_000787 NP_000778 G/T A304S plus 6788 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.1 121 "by cluster,freq" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 256 rs4531 DBH 1621 9 133538924 NM_000787 NP_000778 G/T A304S plus 7897 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 70 0.1 121 "by cluster,freq" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 257 rs4531 DBH 1621 9 133538924 NM_000787 NP_000778 G/T A304S plus 6312556 583 KIDDLAB PO000020C 184 0.07 121 "by cluster,freq" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 258 rs4531 DBH 1621 9 133538924 NM_000787 NP_000778 G/T A304S plus 6312556 827 KIDDLAB PO000008I 242 0.05 121 "by cluster,freq" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 259 rs4531 DBH 1621 9 133538924 NM_000787 NP_000778 G/T A304S plus 22887000 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by cluster,freq" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 260 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 6729 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 261 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 8040 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.1 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 262 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 2984306 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.43 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 263 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 6529220 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 264 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 24054239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 265 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 24054239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 266 rs4534 CYP11B1 1584 8 143958104 NM_000497 NP_000488 A/G R43Q minus 24054239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 267 rs4537 CYP11B2 1585 8 143992794 NM_000498 NP_000489 A/G N281S minus 6765 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 268 rs4537 CYP11B2 1585 8 143992794 NM_000498 NP_000489 A/G N281S minus 8076 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 269 rs4539 CYP11B2 1585 8 143993541 NM_000498 NP_000489 A/G K173R minus 6759 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.3 52 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 270 rs4539 CYP11B2 1585 8 143993541 NM_000498 NP_000489 A/G K173R minus 8079 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 52 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 271 rs4539 CYP11B2 1585 8 143993541 NM_000498 NP_000489 A/G K173R minus 8079 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 272 rs4541 CYP11B1 1584 8 143953695 NM_000497 NP_000488 C/T A386V minus 6772 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 120 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 273 rs4541 CYP11B1 1584 8 143953695 NM_000497 NP_000488 C/T A386V minus 8047 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 120 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 274 rs4541 CYP11B1 1584 8 143953695 NM_000497 NP_000488 C/T A386V minus 8084 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 120 "by doubleHit,freq,cluster" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 275 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 6768 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 40 0.5 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 276 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 8088 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 80 0.33 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 277 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 8088 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 278 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 23523520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 279 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 23523520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 280 rs4544 CYP11B2 1585 8 143991808 NM_000498 NP_000489 C/T I339T minus 23523520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 281 rs4545 CYP11B2 1585 8 143991043 NM_000498 NP_000489 A/G G435S minus 6776 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 120 "by doubleHit,freq,cluster" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 282 rs4545 CYP11B2 1585 8 143991043 NM_000498 NP_000489 A/G G435S minus 8089 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 82 0.33 120 "by doubleHit,freq,cluster" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 283 rs4545 CYP11B2 1585 8 143991043 NM_000498 NP_000489 A/G G435S minus 6529238 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,freq,cluster" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 284 rs4562 CLDN7 1366 17 7104463 NM_001307 NP_001298 A/G V197A plus 8465 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 120 "by doubleHit,freq,cluster" 17p13 claudin 7 285 rs4562 CLDN7 1366 17 7104463 NM_001307 NP_001298 A/G V197A plus 606039 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 "by doubleHit,freq,cluster" 17p13 claudin 7 286 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 8817 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 287 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.22 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 288 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.23 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 289 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 290 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 291 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 292 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 6903803 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 293 rs4588 GC 2638 4 72983358 NM_000583 NP_000574 A/C T436K minus 24796216 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 294 rs4602 KRT19 3880 17 36937847 NM_002276 NP_002267 C/G A60G minus 8962 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.37 123 "by doubleHit,freq" 17q21.2 keratin 19 295 rs4602 KRT19 3880 17 36937847 NM_002276 NP_002267 C/G A60G minus 8962 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq" 17q21.2 keratin 19 296 rs4602 KRT19 3880 17 36937847 NM_002276 NP_002267 C/G A60G minus 23597995 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 "by doubleHit,freq" 17q21.2 keratin 19 297 rs4602 KRT19 3880 17 36937847 NM_002276 NP_002267 C/G A60G minus 23597995 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,freq" 17q21.2 keratin 19 298 rs4602 KRT19 3880 17 36937847 NM_002276 NP_002267 C/G A60G minus 23597995 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq" 17q21.2 keratin 19 299 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 9319 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 300 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 2965913 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 301 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 2965913 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 302 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 13452540 693 EGP_SNPS PDR90 NIHPDR 180 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 303 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 23455231 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 304 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 23455231 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 305 rs4619 IGFBP1 3484 7 45705909 NM_000596 NP_000587 A/G I253M plus 23455231 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 7p13-p12 insulin-like growth factor binding protein 1 306 rs4644 LGALS3 3958 14 54674688 NM_002306 NP_002297 A/C P64H plus 9801 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 307 rs4644 LGALS3 3958 14 54674688 NM_002306 NP_002297 A/C P64H plus 24615984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 308 rs4644 LGALS3 3958 14 54674688 NM_002306 NP_002297 A/C P64H plus 24615984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 309 rs4644 LGALS3 3958 14 54674688 NM_002306 NP_002297 A/C P64H plus 24615984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.14 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 310 rs4652 LGALS3 3958 14 54674789 NM_002306 NP_002297 A/C T98P plus 10155 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.45 120 "by doubleHit,freq,cluster" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 311 rs4652 LGALS3 3958 14 54674789 NM_002306 NP_002297 A/C T98P plus 10741054 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by doubleHit,freq,cluster" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 312 rs4660 SPP1 6696 4 89261184 NM_000582 NP_000573 A/G R287H plus 10351 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.13 123 by freq 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 313 rs4660 SPP1 6696 4 89261184 NM_000582 NP_000573 A/G R287H plus 10351 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 by freq 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 314 rs4660 SPP1 6696 4 89261184 NM_000582 NP_000573 A/G R287H plus 23234837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 315 rs4660 SPP1 6696 4 89261184 NM_000582 NP_000573 A/G R287H plus 23234837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 316 rs4660 SPP1 6696 4 89261184 NM_000582 NP_000573 A/G R287H plus 23234837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 317 rs4667 OAZ1 4946 19 2220692 NM_004152 NP_004143 G/T R32L plus 10624 1303 SEQUENOM CEPH CEPH (92) 92 1 120 by doubleHit 19p13.3 ornithine decarboxylase antizyme 1 318 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 9045 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.5 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 319 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 3173156 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.43 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 320 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 3198503 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.09 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 321 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6598678 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 322 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6598678 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 323 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6903734 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.29 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 324 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6903734 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 325 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6903734 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 326 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6903734 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 327 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 6903734 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 328 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 23779281 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 329 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 23779281 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 330 rs4673 CYBA 1535 16 87240737 NM_000101 NP_000092 C/T Y72H minus 23779281 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 331 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 869771 506 NCBI NIHPDR NIHPDR 74 0.34 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 332 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 4933092 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.32 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 333 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 5586357 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.39 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 334 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 5586357 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 335 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 5586357 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 336 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 5586357 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 337 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 5586357 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 338 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 6312623 583 KIDDLAB PO000020C 186 0.38 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 339 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 12673767 693 EGP_SNPS PDR90 NIHPDR 164 0.39 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 340 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 12673767 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 341 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 16341321 1166 PHARMGKB_PPII PA128747821 240 0.36 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 342 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 24702135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 343 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 24702135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 344 rs4680 COMT 1312 22 18325825 NM_000754 NP_000745 A/G V158M plus 24702135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 345 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 869771 506 NCBI NIHPDR NIHPDR 74 0.34 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 346 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 4933092 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.32 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 347 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 5586357 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.39 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 348 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 5586357 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 349 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 5586357 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 350 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 5586357 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 351 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 5586357 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 352 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 6312623 583 KIDDLAB PO000020C 186 0.38 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 353 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 12673767 693 EGP_SNPS PDR90 NIHPDR 164 0.39 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 354 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 12673767 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 355 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 16341321 1166 PHARMGKB_PPII PA128747821 240 0.36 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 356 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 24702135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 357 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 24702135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 358 rs4680 COMT 1312 22 18325825 NM_007310 NP_009294 A/G V108M plus 24702135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 22q11.21 catechol-O-methyltransferase 359 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 13009 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 360 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 88814 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 361 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 88814 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 362 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 88814 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 363 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 88814 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 364 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 1968400 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 365 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 1968400 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 366 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 24191234 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 367 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 24191234 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 368 rs4740 EBI3 10148 19 4187996 NM_005755 NP_005746 A/G V201I plus 24191234 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 Epstein-Barr virus induced gene 3 369 rs4756 ZNF42 7593 19 63766465 NM_003422 NP_003413 A/G I331V minus 3172814 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.48 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 370 rs4756 ZNF42 7593 19 63766465 NM_003422 NP_003413 A/G I331V minus 4950563 738 YUSUKE JBIC-ALLELE Japanese (752) 884 0.18 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 371 rs4756 ZNF42 7593 19 63766465 NM_003422 NP_003413 A/G I331V minus 16809037 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 372 rs4756 ZNF42 7593 19 63766465 NM_003422 NP_003413 A/G I331V minus 16809037 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 373 rs4756 ZNF42 7593 19 63766465 NM_198055 NP_932172 A/G I331V minus 3172814 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.48 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 374 rs4756 ZNF42 7593 19 63766465 NM_198055 NP_932172 A/G I331V minus 4950563 738 YUSUKE JBIC-ALLELE Japanese (752) 884 0.18 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 375 rs4756 ZNF42 7593 19 63766465 NM_198055 NP_932172 A/G I331V minus 16809037 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 376 rs4756 ZNF42 7593 19 63766465 NM_198055 NP_932172 A/G I331V minus 16809037 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 377 rs4760 PLAUR 5329 19 48844940 NM_002659 NP_002650 C/T L317P minus 10984 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.11 121 "by doubleHit,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 378 rs4760 PLAUR 5329 19 48844940 NM_002659 NP_002650 C/T L317P minus 13784 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.16 121 "by doubleHit,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 379 rs4760 PLAUR 5329 19 48844940 NM_002659 NP_002650 C/T L317P minus 5607654 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 121 "by doubleHit,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 380 rs4760 PLAUR 5329 19 48844940 NM_002659 NP_002650 C/T L317P minus 5607654 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.12 121 "by doubleHit,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 381 rs4760 PLAUR 5329 19 48844940 NM_002659 NP_002650 C/T L317P minus 21508716 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 382 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 11869 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.36 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 383 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 14168 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.31 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 384 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 3172899 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.39 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 385 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 6596713 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 386 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 6596713 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 387 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 23587538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 388 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 23587538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 389 rs4774 MHC2TA 4261 16 10908349 NM_000246 NP_000237 C/G G500A plus 23587538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 16p13 MHC class II transactivator 390 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 15613 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.22 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 391 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 2427777 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 392 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 4918100 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.31 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 393 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 24162907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 394 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 24162907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 395 rs4807 TXNDC7 10130 2 10881501 NM_005742 NP_005733 A/G K214R minus 24162907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 2p25.1 thioredoxin domain containing 7 (protein disulfide isomerase) 396 rs4814 SRP14 6727 15 38115849 NM_003134 NP_003125 A/G T130A minus 15331 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 52 by freq 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 397 rs4814 SRP14 6727 15 38115849 NM_003134 NP_003125 A/G T130A minus 15862 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.38 52 by freq 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 398 rs4816 PCMT1 5110 6 150206859 NM_005389 NP_005380 A/G V120I plus 15904 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.37 108 by freq 6q24-q25 protein-L-isoaspartate (D-aspartate) O-methyltransferase 399 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 7418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 400 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 16286 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 401 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 3227326 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 402 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 14717934 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 403 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 24683929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 404 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 24683929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 405 rs4830 LGALS14 56891 19 44889764 NM_020129 NP_064514 A/G C67R minus 24683929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 406 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 7418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 407 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 16286 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 408 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 3227326 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 409 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 14717934 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 410 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 24683929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 411 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 24683929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 412 rs4830 LGALS14 56891 19 44889764 NM_203471 NP_982297 A/G C96R minus 24683929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 413 rs4845 MRPS21 54460 1 147093623 NM_018997 NP_061870 A/G R51Q plus 9782 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 414 rs4845 MRPS21 54460 1 147093623 NM_018997 NP_061870 A/G R51Q plus 9782 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 415 rs4845 MRPS21 54460 1 147093623 NM_018997 NP_061870 A/G R51Q plus 9782 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 416 rs4845 MRPS21 54460 1 147093623 NM_018997 NP_061870 A/G R51Q plus 24796138 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 417 rs4845 MRPS21 54460 1 147093623 NM_031901 NP_114107 A/G R51Q plus 9782 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 418 rs4845 MRPS21 54460 1 147093623 NM_031901 NP_114107 A/G R51Q plus 9782 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 419 rs4845 MRPS21 54460 1 147093623 NM_031901 NP_114107 A/G R51Q plus 9782 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 420 rs4845 MRPS21 54460 1 147093623 NM_031901 NP_114107 A/G R51Q plus 24796138 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "HapMap,submitter,freq" 1q21 mitochondrial ribosomal protein S21 421 rs4870 TNFRSF14 8764 1 2528567 NM_003820 NP_003811 A/G K17R minus 16359043 693 EGP_SNPS PDR90 NIHPDR 172 0.42 120 "by doubleHit,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 422 rs4893 EMP3 2014 19 53525420 NM_001425 NP_001416 A/G I125V plus 5333 1303 SEQUENOM CEPH CEPH (92) 92 0.08 120 by freq 19q13.3 epithelial membrane protein 3 423 rs4894 ATF4 468 22 38242015 NM_001675 NP_001666 A/C Q22P plus 3172836 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.42 114 "by doubleHit,freq" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 424 rs4894 ATF4 468 22 38242015 NM_001675 NP_001666 A/C Q22P plus 5298654 1303 SEQUENOM CEPH CEPH (92) 92 0.05 114 "by doubleHit,freq" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 425 rs4894 ATF4 468 22 38242015 NM_182810 NP_877962 A/C Q22P plus 3172836 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.42 114 "by doubleHit,freq" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 426 rs4894 ATF4 468 22 38242015 NM_182810 NP_877962 A/C Q22P plus 5298654 1303 SEQUENOM CEPH CEPH (92) 92 0.05 114 "by doubleHit,freq" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 427 rs4907 PSMB3 5691 17 34163025 NM_002795 NP_002786 A/T M34L plus 6616906 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 by freq 17q12 "proteasome (prosome, macropain) subunit, beta type, 3" 428 rs4917 AHSG 197 3 187820415 NM_001622 NP_001613 C/T M248T plus 3529234 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 3q27 alpha-2-HS-glycoprotein 429 rs4917 AHSG 197 3 187820415 NM_001622 NP_001613 C/T M248T plus 24642229 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 3q27 alpha-2-HS-glycoprotein 430 rs4917 AHSG 197 3 187820415 NM_001622 NP_001613 C/T M248T plus 24642229 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 3q27 alpha-2-HS-glycoprotein 431 rs4917 AHSG 197 3 187820415 NM_001622 NP_001613 C/T M248T plus 24642229 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 3q27 alpha-2-HS-glycoprotein 432 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.28 123 by freq 3q27 alpha-2-HS-glycoprotein 433 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 70 0.2 123 by freq 3q27 alpha-2-HS-glycoprotein 434 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 640 TSC-CSHL TSC_42_A TSC Asian (42) 76 0.21 123 by freq 3q27 alpha-2-HS-glycoprotein 435 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.28 123 by freq 3q27 alpha-2-HS-glycoprotein 436 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 58 0.24 123 by freq 3q27 alpha-2-HS-glycoprotein 437 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.3 123 by freq 3q27 alpha-2-HS-glycoprotein 438 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 2121290 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 by freq 3q27 alpha-2-HS-glycoprotein 439 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 24642234 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 3q27 alpha-2-HS-glycoprotein 440 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 24642234 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 3q27 alpha-2-HS-glycoprotein 441 rs4918 AHSG 197 3 187821084 NM_001622 NP_001613 C/G S256T plus 24642234 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 3q27 alpha-2-HS-glycoprotein 442 rs4920 RAB11A 8766 15 63967202 NM_004663 NP_004654 G/T K207N plus 5395 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 15q21.3-q22.31 "RAB11A, member RAS oncogene family" 443 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 4926470 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.12 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 444 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 4926470 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 445 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 4926470 1100 HVA TORREON Mexican (persons who are ingesting inorganic arsenic in their drinking water) 76 0.21 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 446 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 20723413 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 447 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 24502881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 448 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 24502881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 449 rs4925 GSTO1 9446 10 106012779 NM_004832 NP_004823 A/C A140D plus 24502881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 1 450 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 3177294 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.35 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 451 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 3177294 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 452 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 3177294 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 453 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 3205311 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.1 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 454 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 24667718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 455 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 24667718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 456 rs4926 SERPING1 710 11 57138565 NM_000062 NP_000053 A/G V480M plus 24667718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 11q12-q13.1 "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)" 457 rs4945 MFGE8 4240 15 87257548 NM_005928 NP_005919 A/C R3S minus 5471 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 by freq 15q25 milk fat globule-EGF factor 8 protein 458 rs4948 CAST 831 5 96123759 NM_001750 NP_001741 C/T A537V plus 1824746 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 5q15-q21 calpastatin 459 rs4948 CAST 831 5 96123759 NM_173060 NP_775083 C/T A515V plus 1824746 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 5q15-q21 calpastatin 460 rs4948 CAST 831 5 96123759 NM_173061 NP_775084 C/T A260V plus 1824746 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 5q15-q21 calpastatin 461 rs4948 CAST 831 5 96123759 NM_173062 NP_775085 C/T A419V plus 1824746 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 5q15-q21 calpastatin 462 rs4961 ADD1 118 4 2943715 NM_001119 NP_001110 G/T G460W plus 6393 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.15 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 463 rs4961 ADD1 118 4 2943715 NM_001119 NP_001110 G/T G460W plus 22886500 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 464 rs4961 ADD1 118 4 2943715 NM_001119 NP_001110 G/T G460W plus 23891988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 465 rs4961 ADD1 118 4 2943715 NM_001119 NP_001110 G/T G460W plus 23891988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 466 rs4961 ADD1 118 4 2943715 NM_001119 NP_001110 G/T G460W plus 23891988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 467 rs4961 ADD1 118 4 2943715 NM_014189 NP_054908 G/T G460W plus 6393 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.15 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 468 rs4961 ADD1 118 4 2943715 NM_014189 NP_054908 G/T G460W plus 22886500 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 469 rs4961 ADD1 118 4 2943715 NM_014189 NP_054908 G/T G460W plus 23891988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 470 rs4961 ADD1 118 4 2943715 NM_014189 NP_054908 G/T G460W plus 23891988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 471 rs4961 ADD1 118 4 2943715 NM_014189 NP_054908 G/T G460W plus 23891988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 472 rs4961 ADD1 118 4 2943715 NM_014190 NP_054909 G/T G460W plus 6393 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.15 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 473 rs4961 ADD1 118 4 2943715 NM_014190 NP_054909 G/T G460W plus 22886500 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 474 rs4961 ADD1 118 4 2943715 NM_014190 NP_054909 G/T G460W plus 23891988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 475 rs4961 ADD1 118 4 2943715 NM_014190 NP_054909 G/T G460W plus 23891988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 476 rs4961 ADD1 118 4 2943715 NM_014190 NP_054909 G/T G460W plus 23891988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 477 rs4961 ADD1 118 4 2943715 NM_176801 NP_789771 G/T G460W plus 6393 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.15 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 478 rs4961 ADD1 118 4 2943715 NM_176801 NP_789771 G/T G460W plus 22886500 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 479 rs4961 ADD1 118 4 2943715 NM_176801 NP_789771 G/T G460W plus 23891988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 480 rs4961 ADD1 118 4 2943715 NM_176801 NP_789771 G/T G460W plus 23891988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 481 rs4961 ADD1 118 4 2943715 NM_176801 NP_789771 G/T G460W plus 23891988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4p16.3 adducin 1 (alpha) 482 rs4962 ADD1 118 4 2947263 NM_001119 NP_001110 A/T N510I plus 6394 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 483 rs4962 ADD1 118 4 2947263 NM_014189 NP_054908 A/T N541I plus 6394 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 484 rs4962 ADD1 118 4 2947263 NM_014190 NP_054909 A/T N510I plus 6394 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 485 rs4962 ADD1 118 4 2947263 NM_176801 NP_789771 A/T N541I plus 6394 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 486 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 6395 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.4 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 487 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 3195050 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.45 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 488 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 6459656 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 489 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 23892075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 490 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 23892075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 491 rs4963 ADD1 118 4 2953770 NM_001119 NP_001110 C/G S586C plus 23892075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 492 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 6395 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.4 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 493 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 3195050 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.45 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 494 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 6459656 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 495 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 23892075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 496 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 23892075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 497 rs4963 ADD1 118 4 2953770 NM_014189 NP_054908 C/G S617C plus 23892075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 498 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 6395 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.4 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 499 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 3195050 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.45 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 500 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 6459656 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 501 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 23892075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 502 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 23892075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 503 rs4963 ADD1 118 4 2953770 NM_014190 NP_054909 C/G S586C plus 23892075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 504 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 6395 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.4 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 505 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 3195050 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.45 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 506 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 6459656 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 507 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 23892075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 508 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 23892075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 509 rs4963 ADD1 118 4 2953770 NM_176801 NP_789771 C/G S617C plus 23892075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 510 rs4971 ADD1 118 4 2936985 NM_001119 NP_001110 A/T Y270N plus 6404 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 511 rs4971 ADD1 118 4 2936985 NM_001119 NP_001110 A/T Y270N plus 6404 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 512 rs4971 ADD1 118 4 2936985 NM_014189 NP_054908 A/T Y270N plus 6404 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 513 rs4971 ADD1 118 4 2936985 NM_014189 NP_054908 A/T Y270N plus 6404 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 514 rs4971 ADD1 118 4 2936985 NM_014190 NP_054909 A/T Y270N plus 6404 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 515 rs4971 ADD1 118 4 2936985 NM_014190 NP_054909 A/T Y270N plus 6404 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 516 rs4971 ADD1 118 4 2936985 NM_176801 NP_789771 A/T Y270N plus 6404 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 517 rs4971 ADD1 118 4 2936985 NM_176801 NP_789771 A/T Y270N plus 6404 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 518 rs4972 ADD1 118 4 2938137 NM_001119 NP_001110 A/T E376D plus 6405 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 519 rs4972 ADD1 118 4 2938137 NM_001119 NP_001110 A/T E376D plus 6405 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 520 rs4972 ADD1 118 4 2938137 NM_014189 NP_054908 A/T E376D plus 6405 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 521 rs4972 ADD1 118 4 2938137 NM_014189 NP_054908 A/T E376D plus 6405 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 522 rs4972 ADD1 118 4 2938137 NM_014190 NP_054909 A/T E376D plus 6405 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 523 rs4972 ADD1 118 4 2938137 NM_014190 NP_054909 A/T E376D plus 6405 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 524 rs4972 ADD1 118 4 2938137 NM_176801 NP_789771 A/T E376D plus 6405 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4p16.3 adducin 1 (alpha) 525 rs4972 ADD1 118 4 2938137 NM_176801 NP_789771 A/T E376D plus 6405 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.3 adducin 1 (alpha) 526 rs4976 ACE 1636 17 58924669 NM_000789 NP_000780 C/T I1018T plus 6413 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 527 rs4976 ACE 1636 17 58924669 NM_000789 NP_000780 C/T I1018T plus 6413 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 528 rs4976 ACE 1636 17 58924669 NM_152830 NP_690043 C/T I444T plus 6413 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 529 rs4976 ACE 1636 17 58924669 NM_152830 NP_690043 C/T I444T plus 6413 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 530 rs4976 ACE 1636 17 58924669 NM_152831 NP_690044 C/T I444T plus 6413 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 531 rs4976 ACE 1636 17 58924669 NM_152831 NP_690044 C/T I444T plus 6413 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 532 rs4980 ACE 1636 17 58928374 NM_000789 NP_000780 A/G R1279Q plus 6417 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 533 rs4980 ACE 1636 17 58928374 NM_000789 NP_000780 A/G R1279Q plus 6417 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 534 rs4980 ACE 1636 17 58928374 NM_152830 NP_690043 A/G R705Q plus 6417 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 535 rs4980 ACE 1636 17 58928374 NM_152830 NP_690043 A/G R705Q plus 6417 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 536 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 6421 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 537 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 6421 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 538 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 6421 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 539 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 23215245 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 540 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 23215245 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 541 rs4982 ADD2 119 2 70822498 NM_001617 NP_001608 G/T E335D minus 23215245 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 542 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 6421 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 543 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 6421 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 544 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 6421 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 545 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 23215245 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 546 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 23215245 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 547 rs4982 ADD2 119 2 70822498 NM_017485 NP_059519 G/T E113D minus 23215245 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 548 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 6421 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 549 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 6421 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 550 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 6421 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 551 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 23215245 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 552 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 23215245 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 553 rs4982 ADD2 119 2 70822498 NM_017488 NP_059522 G/T E335D minus 23215245 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2p14-p13 adducin 2 (beta) 554 rs4985 ADD2 119 2 70802404 NM_001617 NP_001608 A/C S663R minus 6424 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2p14-p13 adducin 2 (beta) 555 rs4985 ADD2 119 2 70802404 NM_001617 NP_001608 A/C S663R minus 6424 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 556 rs4985 ADD2 119 2 70802404 NM_017483 NP_059517 A/C S357R minus 6424 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2p14-p13 adducin 2 (beta) 557 rs4985 ADD2 119 2 70802404 NM_017483 NP_059517 A/C S357R minus 6424 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 558 rs4985 ADD2 119 2 70802404 NM_017485 NP_059519 A/C S441R minus 6424 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2p14-p13 adducin 2 (beta) 559 rs4985 ADD2 119 2 70802404 NM_017485 NP_059519 A/C S441R minus 6424 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 560 rs4985 ADD2 119 2 70802404 NM_017486 NP_059520 A/C S349R minus 6424 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2p14-p13 adducin 2 (beta) 561 rs4985 ADD2 119 2 70802404 NM_017486 NP_059520 A/C S349R minus 6424 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 562 rs4986 ADD2 119 2 70845114 NM_001617 NP_001608 A/G D28N minus 6425 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 2p14-p13 adducin 2 (beta) 563 rs4986 ADD2 119 2 70845114 NM_001617 NP_001608 A/G D28N minus 6425 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 564 rs4986 ADD2 119 2 70845114 NM_017483 NP_059517 A/G D28N minus 6425 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 2p14-p13 adducin 2 (beta) 565 rs4986 ADD2 119 2 70845114 NM_017483 NP_059517 A/G D28N minus 6425 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 566 rs4986 ADD2 119 2 70845114 NM_017485 NP_059519 A/G D28N minus 6425 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 2p14-p13 adducin 2 (beta) 567 rs4986 ADD2 119 2 70845114 NM_017485 NP_059519 A/G D28N minus 6425 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 568 rs4986 ADD2 119 2 70845114 NM_017486 NP_059520 A/G D28N minus 6425 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 2p14-p13 adducin 2 (beta) 569 rs4986 ADD2 119 2 70845114 NM_017486 NP_059520 A/G D28N minus 6425 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 570 rs4986 ADD2 119 2 70845114 NM_017488 NP_059522 A/G D28N minus 6425 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 2p14-p13 adducin 2 (beta) 571 rs4986 ADD2 119 2 70845114 NM_017488 NP_059522 A/G D28N minus 6425 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p14-p13 adducin 2 (beta) 572 rs4990 ADORA2A 135 22 23161671 NM_000675 NP_000666 A/G R300H plus 6430 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 22q11.23 adenosine A2a receptor 573 rs4990 ADORA2A 135 22 23161671 NM_000675 NP_000666 A/G R300H plus 6430 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 22q11.23 adenosine A2a receptor 574 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 6434 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.15 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 575 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 19434 604 KWOK HydatidiformMoles 10 0.2 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 576 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 2985134 738 YUSUKE JBIC-ALLELE Japanese (752) 1064 0.18 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 577 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 8819655 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.13 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 578 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 8819655 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.15 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 579 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 8819655 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 580 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 8819655 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 581 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 8819655 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.15 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 582 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 20418324 1229 PHARMGKB_APP PA129962750 458 0.07 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 583 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 24795952 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 584 rs4994 ADRB3 155 8 37942955 NM_000025 NP_000016 C/T W64R minus 24811637 1303 SEQUENOM CEPH CEPH (92) 184 0.21 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 585 rs4995 ADRB3 155 8 37942351 NM_000025 NP_000016 C/T T265M minus 6435 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 8p12-p11.2 "adrenergic, beta-3-, receptor" 586 rs5005 ADM 133 11 10284123 NM_001124 NP_001115 C/G S50R plus 6445 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by submitter,freq,cluster" 11p15.4 adrenomedullin 587 rs5005 ADM 133 11 10284123 NM_001124 NP_001115 C/G S50R plus 6445 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 11p15.4 adrenomedullin 588 rs5005 ADM 133 11 10284123 NM_001124 NP_001115 C/G S50R plus 23557388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 11p15.4 adrenomedullin 589 rs5005 ADM 133 11 10284123 NM_001124 NP_001115 C/G S50R plus 23557388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 11p15.4 adrenomedullin 590 rs5005 ADM 133 11 10284123 NM_001124 NP_001115 C/G S50R plus 23557388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 11p15.4 adrenomedullin 591 rs5018 SLC4A1 6521 17 39690660 NM_000342 NP_000333 A/T I442F minus 6459 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 592 rs5018 SLC4A1 6521 17 39690660 NM_000342 NP_000333 A/T I442F minus 6459 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 593 rs5019 SLC4A1 6521 17 39688611 NM_000342 NP_000333 A/T M586L minus 6460 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 594 rs5019 SLC4A1 6521 17 39688611 NM_000342 NP_000333 A/T M586L minus 6460 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 595 rs5022 SLC4A1 6521 17 39686261 NM_000342 NP_000333 A/G I688V minus 6463 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 596 rs5022 SLC4A1 6521 17 39686261 NM_000342 NP_000333 A/G I688V minus 6463 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 597 rs5023 SLC4A1 6521 17 39686255 NM_000342 NP_000333 A/G S690G minus 6464 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 598 rs5025 SLC4A1 6521 17 39684213 NM_000342 NP_000333 A/G R832H minus 6466 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 599 rs5026 SLC4A1 6521 17 39684124 NM_000342 NP_000333 A/G V862I minus 6467 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 600 rs5026 SLC4A1 6521 17 39684124 NM_000342 NP_000333 A/G V862I minus 6467 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 601 rs5026 SLC4A1 6521 17 39684124 NM_000342 NP_000333 A/G V862I minus 23605008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 602 rs5026 SLC4A1 6521 17 39684124 NM_000342 NP_000333 A/G V862I minus 23605008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 603 rs5026 SLC4A1 6521 17 39684124 NM_000342 NP_000333 A/G V862I minus 23605008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 604 rs5035 SLC4A1 6521 17 39694524 NM_000342 NP_000333 A/C D38A minus 6476 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 123 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 605 rs5036 SLC4A1 6521 17 39694471 NM_000342 NP_000333 A/G K56E minus 6477 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.25 123 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 606 rs5036 SLC4A1 6521 17 39694471 NM_000342 NP_000333 A/G K56E minus 6477 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 607 rs5036 SLC4A1 6521 17 39694471 NM_000342 NP_000333 A/G K56E minus 28461680 549 KYUGEN CP CEPH (78) 156 0.1 123 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 608 rs5036 SLC4A1 6521 17 39694471 NM_000342 NP_000333 A/G K56E minus 28461680 1335 KYUGEN JPK2 Japanese (100) 200 0.12 123 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 609 rs5037 SLC4A1 6521 17 39693542 NM_000342 NP_000333 A/T R112S minus 6478 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 610 rs5037 SLC4A1 6521 17 39693542 NM_000342 NP_000333 A/T R112S minus 6478 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 611 rs5039 AGT 183 1 227153175 NM_000029 NP_000020 C/T Q53X minus 6480 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 612 rs5039 AGT 183 1 227153175 NM_000029 NP_000020 C/T Q53X minus 6480 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q42-q43 "angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8)" 613 rs5054 AKR1B1 231 7 133601027 NM_001628 NP_001619 A/T I15F minus 6498 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 HapMap 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 614 rs5054 AKR1B1 231 7 133601027 NM_001628 NP_001619 A/T I15F minus 6498 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 615 rs5054 AKR1B1 231 7 133601027 NM_001628 NP_001619 A/T I15F minus 6498 1303 SEQUENOM CEPH CEPH (92) 92 0.01 52 HapMap 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 616 rs5056 AKR1B1 231 7 133593702 NM_001628 NP_001619 A/T H42L minus 6500 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 617 rs5056 AKR1B1 231 7 133593702 NM_001628 NP_001619 A/T H42L minus 6500 1303 SEQUENOM CEPH CEPH (92) 92 0.01 52 by freq 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 618 rs5057 AKR1B1 231 7 133593610 NM_001628 NP_001619 C/G L73V minus 6501 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 HapMap 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 619 rs5057 AKR1B1 231 7 133593610 NM_001628 NP_001619 C/G L73V minus 6501 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 620 rs5061 AKR1B1 231 7 133590443 NM_001628 NP_001619 A/G G204S minus 6505 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 621 rs5061 AKR1B1 231 7 133590443 NM_001628 NP_001619 A/G G204S minus 6505 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 622 rs5062 AKR1B1 231 7 133587290 NM_001628 NP_001619 C/T T288I minus 6506 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q35 "aldo-keto reductase family 1, member B1 (aldose reductase)" 623 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 6507 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.05 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 624 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 3189236 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 625 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 22886255 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 626 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 23838405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 627 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 23838405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 628 rs5063 NPPA 4878 1 11841914 NM_006172 NP_006163 A/G V32M minus 23838405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 629 rs5065 NPPA 4878 1 11840334 NM_006172 NP_006163 A/G *152R plus 6509 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 630 rs5065 NPPA 4878 1 11840334 NM_006172 NP_006163 A/G *152R plus 678793 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 631 rs5065 NPPA 4878 1 11840334 NM_006172 NP_006163 A/G *152R plus 678793 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.21 natriuretic peptide precursor A 632 rs5122 APOC2 344 19 50143920 NM_000483 NP_000474 A/G E60K plus 6566 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19q13.2 apolipoprotein C-II 633 rs5122 APOC2 344 19 50143920 NM_000483 NP_000474 A/G E60K plus 6566 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.2 apolipoprotein C-II 634 rs5126 APOC2 344 19 50144269 NM_000483 NP_000474 A/C K77Q plus 6570 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.3 52 by freq 19q13.2 apolipoprotein C-II 635 rs5164 APOC4 346 19 50139910 NM_001646 NP_001637 A/G W47X plus 6610 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 HapMap 19q13.2 apolipoprotein C-IV 636 rs5164 APOC4 346 19 50139910 NM_001646 NP_001637 A/G W47X plus 6610 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 19q13.2 apolipoprotein C-IV 637 rs5164 APOC4 346 19 50139910 NM_001646 NP_001637 A/G W47X plus 6610 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 19q13.2 apolipoprotein C-IV 638 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 6613 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 74 0.5 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 639 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 16797417 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 640 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 20419759 1232 PHARMGKB_PARC PA129964588 142 0.37 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 641 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 20419889 1232 PHARMGKB_PARC PA129964588 142 0.35 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 642 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 24106807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 643 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 24106807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 644 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 24106807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 645 rs5167 APOC4 346 19 50140305 NM_001646 NP_001637 G/T L96R plus 24795972 1303 SEQUENOM CEPH CEPH (92) 184 0.45 123 "by doubleHit,submitter,freq,cluster" 19q13.2 apolipoprotein C-IV 646 rs5168 APOC4 346 19 50140395 NM_001646 NP_001637 A/T Q126L plus 6614 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 19q13.2 apolipoprotein C-IV 647 rs5168 APOC4 346 19 50140395 NM_001646 NP_001637 A/T Q126L plus 6614 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.2 apolipoprotein C-IV 648 rs5170 LRP8 7804 1 53439844 NM_004631 NP_004622 A/C I611L minus 6616 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 649 rs5170 LRP8 7804 1 53439844 NM_004631 NP_004622 A/C I611L minus 6616 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 650 rs5170 LRP8 7804 1 53439844 NM_017522 NP_059992 A/C I482L minus 6616 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 651 rs5170 LRP8 7804 1 53439844 NM_017522 NP_059992 A/C I482L minus 6616 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 652 rs5170 LRP8 7804 1 53439844 NM_033300 NP_150643 A/C I441L minus 6616 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 653 rs5170 LRP8 7804 1 53439844 NM_033300 NP_150643 A/C I441L minus 6616 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 654 rs5171 LRP8 7804 1 53438255 NM_004631 NP_004622 C/G S653T minus 6617 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 655 rs5171 LRP8 7804 1 53438255 NM_004631 NP_004622 C/G S653T minus 6617 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 656 rs5171 LRP8 7804 1 53438255 NM_017522 NP_059992 C/G S524T minus 6617 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 657 rs5171 LRP8 7804 1 53438255 NM_017522 NP_059992 C/G S524T minus 6617 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 658 rs5171 LRP8 7804 1 53438255 NM_033300 NP_150643 C/G S483T minus 6617 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 659 rs5171 LRP8 7804 1 53438255 NM_033300 NP_150643 C/G S483T minus 6617 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 660 rs5172 LRP8 7804 1 53436014 NM_004631 NP_004622 A/G R736Q minus 6618 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 661 rs5172 LRP8 7804 1 53436014 NM_017522 NP_059992 A/G R607Q minus 6618 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 662 rs5172 LRP8 7804 1 53436014 NM_033300 NP_150643 A/G R566Q minus 6618 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 663 rs5174 LRP8 7804 1 53424748 NM_004631 NP_004622 A/G R952Q minus 6620 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 34 0.5 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 664 rs5174 LRP8 7804 1 53424748 NM_004631 NP_004622 A/G R952Q minus 24607626 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 665 rs5174 LRP8 7804 1 53424748 NM_004631 NP_004622 A/G R952Q minus 24607626 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 666 rs5174 LRP8 7804 1 53424748 NM_004631 NP_004622 A/G R952Q minus 24607626 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 667 rs5174 LRP8 7804 1 53424748 NM_017522 NP_059992 A/G R689Q minus 6620 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 34 0.5 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 668 rs5174 LRP8 7804 1 53424748 NM_017522 NP_059992 A/G R689Q minus 24607626 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 669 rs5174 LRP8 7804 1 53424748 NM_017522 NP_059992 A/G R689Q minus 24607626 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 670 rs5174 LRP8 7804 1 53424748 NM_017522 NP_059992 A/G R689Q minus 24607626 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 671 rs5174 LRP8 7804 1 53424748 NM_033300 NP_150643 A/G R782Q minus 6620 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 34 0.5 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 672 rs5174 LRP8 7804 1 53424748 NM_033300 NP_150643 A/G R782Q minus 24607626 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 673 rs5174 LRP8 7804 1 53424748 NM_033300 NP_150643 A/G R782Q minus 24607626 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 674 rs5174 LRP8 7804 1 53424748 NM_033300 NP_150643 A/G R782Q minus 24607626 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 675 rs5180 LRP8 7804 1 53444236 NM_004631 NP_004622 A/G V453M minus 6626 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 676 rs5180 LRP8 7804 1 53444236 NM_004631 NP_004622 A/G V453M minus 6626 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 677 rs5180 LRP8 7804 1 53444236 NM_017522 NP_059992 A/G V324M minus 6626 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 678 rs5180 LRP8 7804 1 53444236 NM_017522 NP_059992 A/G V324M minus 6626 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 679 rs5180 LRP8 7804 1 53444236 NM_033300 NP_150643 A/G V283M minus 6626 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 680 rs5180 LRP8 7804 1 53444236 NM_033300 NP_150643 A/G V283M minus 6626 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 681 rs5181 LRP8 7804 1 53444195 NM_004631 NP_004622 C/G W466C minus 6627 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 682 rs5181 LRP8 7804 1 53444195 NM_004631 NP_004622 C/G W466C minus 6627 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 683 rs5181 LRP8 7804 1 53444195 NM_017522 NP_059992 C/G W337C minus 6627 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 684 rs5181 LRP8 7804 1 53444195 NM_017522 NP_059992 C/G W337C minus 6627 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 685 rs5181 LRP8 7804 1 53444195 NM_033300 NP_150643 C/G W296C minus 6627 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 686 rs5181 LRP8 7804 1 53444195 NM_033300 NP_150643 C/G W296C minus 6627 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 687 rs5195 AVP 551 20 3011700 NM_000490 NP_000481 C/T P82L minus 6641 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 20p13 "arginine vasopressin (neurophysin II, antidiuretic hormone, diabetes insipidus, neurohypophyseal)" 688 rs5215 KCNJ11 3767 11 17365206 NM_000525 NP_000516 C/T V337I plus 6661 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.15 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 689 rs5215 KCNJ11 3767 11 17365206 NM_000525 NP_000516 C/T V337I plus 12586856 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 690 rs5215 KCNJ11 3767 11 17365206 NM_000525 NP_000516 C/T V337I plus 24796653 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 691 rs5217 KCNJ11 3767 11 17365631 NM_000525 NP_000516 C/T R195H plus 6663 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 692 rs5217 KCNJ11 3767 11 17365631 NM_000525 NP_000516 C/T R195H plus 6663 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 693 rs5219 KCNJ11 3767 11 17366148 NM_000525 NP_000516 C/T K23E plus 6665 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.25 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 694 rs5219 KCNJ11 3767 11 17366148 NM_000525 NP_000516 C/T K23E plus 12586852 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 695 rs5219 KCNJ11 3767 11 17366148 NM_000525 NP_000516 C/T K23E plus 24796654 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by doubleHit,freq,cluster" 11p15.1 "potassium inwardly-rectifying channel, subfamily J, member 11" 696 rs5227 NPPB 4879 1 11853083 NM_002521 NP_002512 G/T R25L minus 6673 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1p36.2 natriuretic peptide precursor B 697 rs5227 NPPB 4879 1 11853083 NM_002521 NP_002512 G/T R25L minus 6673 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p36.2 natriuretic peptide precursor B 698 rs5230 NPPB 4879 1 11852648 NM_002521 NP_002512 A/T M93L minus 6676 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p36.2 natriuretic peptide precursor B 699 rs5230 NPPB 4879 1 11852648 NM_002521 NP_002512 A/T M93L minus 6676 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p36.2 natriuretic peptide precursor B 700 rs5239 CALCA 796 11 14948115 NM_001741 NP_001732 A/G N57D minus 6685 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 121 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 701 rs5239 CALCA 796 11 14948115 NM_001741 NP_001732 A/G N57D minus 4044564 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 702 rs5241 CALCA 796 11 14947119 NM_001741 NP_001732 A/C S76R minus 6687 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 703 rs5241 CALCA 796 11 14947119 NM_001741 NP_001732 A/C S76R minus 23582956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 704 rs5241 CALCA 796 11 14947119 NM_001741 NP_001732 A/C S76R minus 23582956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 705 rs5241 CALCA 796 11 14947119 NM_001741 NP_001732 A/C S76R minus 23582956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 11p15.2-p15.1 "calcitonin/calcitonin-related polypeptide, alpha" 706 rs5246 CMA1 1215 14 24046475 NM_001836 NP_001827 C/G G46R minus 6693 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 14q11.2 "chymase 1, mast cell" 707 rs5246 CMA1 1215 14 24046475 NM_001836 NP_001827 C/G G46R minus 6693 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 14q11.2 "chymase 1, mast cell" 708 rs5247 CMA1 1215 14 24046414 NM_001836 NP_001827 A/G H66R minus 6694 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 14q11.2 "chymase 1, mast cell" 709 rs5247 CMA1 1215 14 24046414 NM_001836 NP_001827 A/G H66R minus 6694 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 14q11.2 "chymase 1, mast cell" 710 rs5251 CLCNKB 1188 1 16122348 NM_000085 NP_000076 C/G V334L plus 6698 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.4 52 by freq 1p36 chloride channel Kb 711 rs5251 CLCNKB 1188 1 16122348 NM_000085 NP_000076 C/G V334L plus 6698 1303 SEQUENOM CEPH CEPH (92) 92 0.49 52 by freq 1p36 chloride channel Kb 712 rs5253 CLCNKB 1188 1 16125502 NM_000085 NP_000076 C/T M562T plus 6700 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "HapMap,doubleHit,cluster" 1p36 chloride channel Kb 713 rs5253 CLCNKB 1188 1 16125502 NM_000085 NP_000076 C/T M562T plus 3211170 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.17 123 "HapMap,doubleHit,cluster" 1p36 chloride channel Kb 714 rs5253 CLCNKB 1188 1 16125502 NM_000085 NP_000076 C/T M562T plus 5284894 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,doubleHit,cluster" 1p36 chloride channel Kb 715 rs5253 CLCNKB 1188 1 16125502 NM_000085 NP_000076 C/T M562T plus 5284894 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,cluster" 1p36 chloride channel Kb 716 rs5256 CLCNKB 1188 1 16118368 NM_000085 NP_000076 A/C S88R plus 6703 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1p36 chloride channel Kb 717 rs5259 CLCNKB 1188 1 16119774 NM_000085 NP_000076 A/C N143H plus 6706 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "HapMap,cluster" 1p36 chloride channel Kb 718 rs5259 CLCNKB 1188 1 16119774 NM_000085 NP_000076 A/C N143H plus 6706 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 1p36 chloride channel Kb 719 rs5267 NPPC 4880 2 232615776 NM_024409 NP_077720 A/G R82Q minus 6714 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2q24-qter natriuretic peptide precursor C 720 rs5267 NPPC 4880 2 232615776 NM_024409 NP_077720 A/G R82Q minus 6714 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2q24-qter natriuretic peptide precursor C 721 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 6720 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 722 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 23092 527 OEFNER AUTOSOME Stanford Autosome Collection 4 0.5 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 723 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 4479801 506 NCBI NIHPDR NIHPDR 160 0.01 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 724 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 5586881 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 725 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 5586881 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 726 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 5586881 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 727 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 5586881 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 728 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 5586881 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 729 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 6396201 693 EGP_SNPS PDR90 NIHPDR 170 0.01 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 730 rs5273 PTGS2 5743 1 183375425 NM_000963 NP_000954 C/T V511A minus 6396201 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 731 rs5282 CYP11B1 1584 8 143958045 NM_000497 NP_000488 C/G D63H minus 6730 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 732 rs5282 CYP11B1 1584 8 143958045 NM_000497 NP_000488 C/G D63H minus 6730 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 733 rs5287 CYP11B1 1584 8 143955556 NM_000497 NP_000488 C/G M160I minus 6735 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 734 rs5287 CYP11B1 1584 8 143955556 NM_000497 NP_000488 C/G M160I minus 6735 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 735 rs5288 CYP11B1 1584 8 143955128 NM_000497 NP_000488 G/T F257L minus 6737 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 736 rs5291 CYP11B1 1584 8 143954771 NM_000497 NP_000488 A/G S281N minus 6741 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 737 rs5291 CYP11B1 1584 8 143954771 NM_000497 NP_000488 A/G S281N minus 6741 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 738 rs5292 CYP11B1 1584 8 143954736 NM_000497 NP_000488 C/G L293V minus 6743 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.2 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 739 rs5292 CYP11B1 1584 8 143954736 NM_000497 NP_000488 C/G L293V minus 6743 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 740 rs5294 CYP11B1 1584 8 143953458 NM_000497 NP_000488 C/T Y439H minus 6745 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 741 rs5294 CYP11B1 1584 8 143953458 NM_000497 NP_000488 C/T Y439H minus 24796366 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by cluster,freq" 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 742 rs5308 CYP11B2 1585 8 143993257 NM_000498 NP_000489 A/C N222T minus 6761 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 743 rs5315 CYP11B2 1585 8 143991138 NM_000498 NP_000489 A/T V403E minus 6775 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 HapMap 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 744 rs5315 CYP11B2 1585 8 143991138 NM_000498 NP_000489 A/T V403E minus 6775 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 745 rs5317 CYP11B2 1585 8 143990451 NM_000498 NP_000489 G/T F487V minus 6778 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 746 rs5317 CYP11B2 1585 8 143990451 NM_000498 NP_000489 G/T F487V minus 6778 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 747 rs5319 DBH 1621 9 133536937 NM_000787 NP_000778 C/G E167Q plus 6781 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 748 rs5319 DBH 1621 9 133536937 NM_000787 NP_000778 C/G E167Q plus 6781 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 749 rs5320 DBH 1621 9 133537027 NM_000787 NP_000778 A/G A197T plus 6782 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.1 121 "HapMap,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 750 rs5320 DBH 1621 9 133537027 NM_000787 NP_000778 A/G A197T plus 6782 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 121 "HapMap,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 751 rs5320 DBH 1621 9 133537027 NM_000787 NP_000778 A/G A197T plus 22886995 1303 SEQUENOM CEPH CEPH (92) 92 0.07 121 "HapMap,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 752 rs5321 DBH 1621 9 133537113 NM_000787 NP_000778 C/G K225N plus 6783 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 753 rs5321 DBH 1621 9 133537113 NM_000787 NP_000778 C/G K225N plus 6783 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 754 rs5323 DBH 1621 9 133538092 NM_000787 NP_000778 C/G E236Q plus 6785 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 755 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 6786 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 756 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 6786 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 757 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 6786 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 758 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 23677244 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 759 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 23677244 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 760 rs5324 DBH 1621 9 133538212 NM_000787 NP_000778 A/G D276N plus 23677244 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 761 rs5325 DBH 1621 9 133538922 NM_000787 NP_000778 C/T L303P plus 6787 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 762 rs5325 DBH 1621 9 133538922 NM_000787 NP_000778 C/T L303P plus 6787 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 763 rs5327 DRD1 1812 5 174802600 NM_000794 NP_000785 A/C T37P minus 6791 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 5q35.1 dopamine receptor D1 764 rs5327 DRD1 1812 5 174802600 NM_000794 NP_000785 A/C T37P minus 6791 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 5q35.1 dopamine receptor D1 765 rs5328 DRD1 1812 5 174802599 NM_000794 NP_000785 C/G T37R minus 6792 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 5q35.1 dopamine receptor D1 766 rs5328 DRD1 1812 5 174802599 NM_000794 NP_000785 C/G T37R minus 6792 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 5q35.1 dopamine receptor D1 767 rs5330 DRD1 1812 5 174802559 NM_000794 NP_000785 G/T R50S minus 6794 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 5q35.1 dopamine receptor D1 768 rs5330 DRD1 1812 5 174802559 NM_000794 NP_000785 G/T R50S minus 6794 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 5q35.1 dopamine receptor D1 769 rs5331 DRD1 1812 5 174802114 NM_000794 NP_000785 G/T S199A minus 6795 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 5q35.1 dopamine receptor D1 770 rs5331 DRD1 1812 5 174802114 NM_000794 NP_000785 G/T S199A minus 6795 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 5q35.1 dopamine receptor D1 771 rs5345 EDNRB 1910 13 77390690 NM_000115 NP_000106 A/T L7Q minus 6809 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 13q22 endothelin receptor type B 772 rs5345 EDNRB 1910 13 77390690 NM_000115 NP_000106 A/T L7Q minus 6809 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q22 endothelin receptor type B 773 rs5345 EDNRB 1910 13 77390690 NM_003991 NP_003982 A/T L7Q minus 6809 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 13q22 endothelin receptor type B 774 rs5345 EDNRB 1910 13 77390690 NM_003991 NP_003982 A/T L7Q minus 6809 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q22 endothelin receptor type B 775 rs5347 EDNRB 1910 13 77390376 NM_000115 NP_000106 G/T F112V minus 6811 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 13q22 endothelin receptor type B 776 rs5347 EDNRB 1910 13 77390376 NM_000115 NP_000106 G/T F112V minus 6811 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q22 endothelin receptor type B 777 rs5347 EDNRB 1910 13 77390376 NM_003991 NP_003982 G/T F112V minus 6811 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 13q22 endothelin receptor type B 778 rs5347 EDNRB 1910 13 77390376 NM_003991 NP_003982 G/T F112V minus 6811 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q22 endothelin receptor type B 779 rs5350 EDNRB 1910 13 77375362 NM_000115 NP_000106 C/T T244M minus 6814 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 13q22 endothelin receptor type B 780 rs5350 EDNRB 1910 13 77375362 NM_000115 NP_000106 C/T T244M minus 6814 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 13q22 endothelin receptor type B 781 rs5350 EDNRB 1910 13 77375362 NM_003991 NP_003982 C/T T244M minus 6814 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 13q22 endothelin receptor type B 782 rs5350 EDNRB 1910 13 77375362 NM_003991 NP_003982 C/T T244M minus 6814 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 13q22 endothelin receptor type B 783 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 6816 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 13q22 endothelin receptor type B 784 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 20399050 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "by cluster,freq" 13q22 endothelin receptor type B 785 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 20399050 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 13q22 endothelin receptor type B 786 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 24396735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 13q22 endothelin receptor type B 787 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 24396735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 13q22 endothelin receptor type B 788 rs5352 EDNRB 1910 13 77373231 NM_000115 NP_000106 A/G S305N minus 24396735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q22 endothelin receptor type B 789 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 6816 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 13q22 endothelin receptor type B 790 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 20399050 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "by cluster,freq" 13q22 endothelin receptor type B 791 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 20399050 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 13q22 endothelin receptor type B 792 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 24396735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 13q22 endothelin receptor type B 793 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 24396735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 13q22 endothelin receptor type B 794 rs5352 EDNRB 1910 13 77373231 NM_003991 NP_003982 A/G S305N minus 24396735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q22 endothelin receptor type B 795 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 6819 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 796 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 5111468 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.05 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 797 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 5111468 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 798 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 24266318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 799 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 24266318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 800 rs5355 SELE 6401 1 166427528 NM_000450 NP_000441 C/T L575F minus 24266318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 801 rs5360 SELE 6401 1 166433445 NM_000450 NP_000441 C/G C130W minus 6825 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 1q22-q25 selectin E (endothelial adhesion molecule 1) 802 rs5360 SELE 6401 1 166433445 NM_000450 NP_000441 C/G C130W minus 6825 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q22-q25 selectin E (endothelial adhesion molecule 1) 803 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6826 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.05 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 804 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 5111403 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 805 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 5111403 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.09 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 806 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 5111403 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 807 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6903932 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.08 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 808 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6903932 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.16 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 809 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6903932 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 810 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6903932 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 811 rs5361 SELE 6401 1 166432718 NM_000450 NP_000441 A/C S149R minus 6903932 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 812 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 6829 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 813 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 5111421 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 814 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 5111421 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 815 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 23189791 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 816 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 23189791 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 817 rs5364 SELE 6401 1 166430305 NM_000450 NP_000441 A/G E295K minus 23189791 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 818 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 6831 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 819 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 5111425 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 820 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 5111425 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 821 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 23189733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 822 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 23189733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 823 rs5366 SELE 6401 1 166428875 NM_000450 NP_000441 C/G E421Q minus 23189733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 824 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 6833 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.05 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 825 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 2984349 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.19 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 826 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 5111428 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.17 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 827 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 5111428 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 828 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 5111428 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 829 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 23860569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 830 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 23860569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 831 rs5368 SELE 6401 1 166428604 NM_000450 NP_000441 C/T H468Y minus 23860569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 1q22-q25 selectin E (endothelial adhesion molecule 1) 832 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 6835 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.25 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 833 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 2985752 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 834 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 3176606 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.2 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 835 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 8819730 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.18 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 836 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 8819730 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.29 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 837 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 8819730 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 838 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 8819730 777 SNP500CANCER HISP1 Hispanic (23) 44 0.02 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 839 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 8819730 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.27 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 840 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 14857936 693 EGP_SNPS PDR90 NIHPDR 144 0.23 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 841 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 24787768 1303 SEQUENOM CEPH CEPH (92) 184 0.3 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 842 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 24796004 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 843 rs5370 EDN1 1906 6 12404241 NM_001955 NP_001946 G/T K198N plus 24796238 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by doubleHit,freq,cluster" 6p24.1 endothelin 1 844 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 6841 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.3 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 845 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 2400771 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 846 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 2400771 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 847 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 23615743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 848 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 23615743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 849 rs5376 GALR1 2587 18 73109797 NM_001480 NP_001471 C/T S334N minus 23615743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 18q23 galanin receptor 1 850 rs5377 GALR1 2587 18 73109821 NM_001480 NP_001471 C/T P342L plus 6842 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 18q23 galanin receptor 1 851 rs5377 GALR1 2587 18 73109821 NM_001480 NP_001471 C/T P342L plus 6842 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 18q23 galanin receptor 1 852 rs5388 GH1 2688 17 59348902 NM_000515 NP_000506 A/G V136I minus 6853 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 117 "HapMap,cluster" 17q24.2 growth hormone 1 853 rs5388 GH1 2688 17 59348902 NM_000515 NP_000506 A/G V136I minus 12587379 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 854 rs5388 GH1 2688 17 59348902 NM_000515 NP_000506 A/G V136I minus 12587379 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 "HapMap,cluster" 17q24.2 growth hormone 1 855 rs5388 GH1 2688 17 59348902 NM_000515 NP_000506 A/G V136I minus 12587379 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 856 rs5388 GH1 2688 17 59348902 NM_022559 NP_072053 A/G V121I minus 6853 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 117 "HapMap,cluster" 17q24.2 growth hormone 1 857 rs5388 GH1 2688 17 59348902 NM_022559 NP_072053 A/G V121I minus 12587379 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 858 rs5388 GH1 2688 17 59348902 NM_022559 NP_072053 A/G V121I minus 12587379 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 "HapMap,cluster" 17q24.2 growth hormone 1 859 rs5388 GH1 2688 17 59348902 NM_022559 NP_072053 A/G V121I minus 12587379 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 860 rs5388 GH1 2688 17 59348902 NM_022560 NP_072054 A/G V96I minus 6853 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 117 "HapMap,cluster" 17q24.2 growth hormone 1 861 rs5388 GH1 2688 17 59348902 NM_022560 NP_072054 A/G V96I minus 12587379 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 862 rs5388 GH1 2688 17 59348902 NM_022560 NP_072054 A/G V96I minus 12587379 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 "HapMap,cluster" 17q24.2 growth hormone 1 863 rs5388 GH1 2688 17 59348902 NM_022560 NP_072054 A/G V96I minus 12587379 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "HapMap,cluster" 17q24.2 growth hormone 1 864 rs5389 GH2 2689 17 59312144 NM_002059 NP_002050 A/T R90W minus 6854 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q24.2 growth hormone 2 865 rs5389 GH2 2689 17 59312144 NM_002059 NP_002050 A/T R90W minus 6854 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q24.2 growth hormone 2 866 rs5389 GH2 2689 17 59312144 NM_022556 NP_072050 A/T R75W minus 6854 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q24.2 growth hormone 2 867 rs5389 GH2 2689 17 59312144 NM_022556 NP_072050 A/T R75W minus 6854 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q24.2 growth hormone 2 868 rs5389 GH2 2689 17 59312144 NM_022557 NP_072051 A/T R90W minus 6854 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q24.2 growth hormone 2 869 rs5389 GH2 2689 17 59312144 NM_022557 NP_072051 A/T R90W minus 6854 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q24.2 growth hormone 2 870 rs5389 GH2 2689 17 59312144 NM_022558 NP_072052 A/T R90W minus 6854 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 17q24.2 growth hormone 2 871 rs5389 GH2 2689 17 59312144 NM_022558 NP_072052 A/T R90W minus 6854 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q24.2 growth hormone 2 872 rs5392 GIPR 2696 19 50872197 NM_000164 NP_000155 C/G L262V plus 6857 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19q13.3 gastric inhibitory polypeptide receptor 873 rs5392 GIPR 2696 19 50872197 NM_000164 NP_000155 C/G L262V plus 6857 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.3 gastric inhibitory polypeptide receptor 874 rs5397 SLC2A2 6514 3 172198537 NM_000340 NP_000331 C/G L478V minus 6862 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 875 rs5397 SLC2A2 6514 3 172198537 NM_000340 NP_000331 C/G L478V minus 6862 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 876 rs5400 SLC2A2 6514 3 172215002 NM_000340 NP_000331 C/T T110I minus 6865 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 121 "HapMap,doubleHit,submitter,freq,cluster" 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 877 rs5400 SLC2A2 6514 3 172215002 NM_000340 NP_000331 C/T T110I minus 12587280 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,doubleHit,submitter,freq,cluster" 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 878 rs5400 SLC2A2 6514 3 172215002 NM_000340 NP_000331 C/T T110I minus 12587280 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.14 121 "HapMap,doubleHit,submitter,freq,cluster" 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 879 rs5400 SLC2A2 6514 3 172215002 NM_000340 NP_000331 C/T T110I minus 19544170 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,doubleHit,submitter,freq,cluster" 3q26.1-q26.2 "solute carrier family 2 (facilitated glucose transporter), member 2" 880 rs5444 GNB3 2784 12 6826316 NM_002075 NP_002066 G/T W339L plus 6909 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 HapMap 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 881 rs5444 GNB3 2784 12 6826316 NM_002075 NP_002066 G/T W339L plus 6909 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 52 HapMap 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 882 rs5444 GNB3 2784 12 6826316 NM_002075 NP_002066 G/T W339L plus 6909 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 883 rs5450 GYS1 2997 19 54164879 NM_002103 NP_002094 C/G E619Q minus 6915 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 19q13.3 glycogen synthase 1 (muscle) 884 rs5450 GYS1 2997 19 54164879 NM_002103 NP_002094 C/G E619Q minus 6915 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 885 rs5453 GYS1 2997 19 54164500 NM_002103 NP_002094 C/G P691A minus 6918 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 123 "by cluster,freq" 19q13.3 glycogen synthase 1 (muscle) 886 rs5453 GYS1 2997 19 54164500 NM_002103 NP_002094 C/G P691A minus 6918 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19q13.3 glycogen synthase 1 (muscle) 887 rs5455 GYS1 2997 19 54182431 NM_002103 NP_002094 C/G I108M minus 6920 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 HapMap 19q13.3 glycogen synthase 1 (muscle) 888 rs5455 GYS1 2997 19 54182431 NM_002103 NP_002094 C/G I108M minus 6920 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 19q13.3 glycogen synthase 1 (muscle) 889 rs5455 GYS1 2997 19 54182431 NM_002103 NP_002094 C/G I108M minus 6920 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 19q13.3 glycogen synthase 1 (muscle) 890 rs5456 GYS1 2997 19 54182367 NM_002103 NP_002094 A/G K130E minus 6921 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 891 rs5456 GYS1 2997 19 54182367 NM_002103 NP_002094 A/G K130E minus 6921 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 892 rs5461 GYS1 2997 19 54177882 NM_002103 NP_002094 A/G N283S minus 6926 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 19q13.3 glycogen synthase 1 (muscle) 893 rs5461 GYS1 2997 19 54177882 NM_002103 NP_002094 A/G N283S minus 6926 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 894 rs5465 GYS1 2997 19 54176692 NM_002103 NP_002094 A/G E359G minus 6930 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 895 rs5465 GYS1 2997 19 54176692 NM_002103 NP_002094 A/G E359G minus 6930 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 896 rs5465 GYS1 2997 19 54176692 NM_002103 NP_002094 A/G E359G minus 6930 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.06 52 by freq 19q13.3 glycogen synthase 1 (muscle) 897 rs5465 GYS1 2997 19 54176692 NM_002103 NP_002094 A/G E359G minus 6930 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 19q13.3 glycogen synthase 1 (muscle) 898 rs5465 GYS1 2997 19 54176692 NM_002103 NP_002094 A/G E359G minus 6930 1303 SEQUENOM CEPH CEPH (92) 92 0.48 52 by freq 19q13.3 glycogen synthase 1 (muscle) 899 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 6956 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.35 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 900 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 3172764 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 1 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 901 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.06 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 902 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 903 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 904 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 777 SNP500CANCER HISP1 Hispanic (23) 44 0.07 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 905 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 906 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 907 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 5586604 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 908 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 7985433 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.35 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 909 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 23403416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 910 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 23403416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 911 rs5491 ICAM1 3383 19 10246540 NM_000201 NP_000192 A/T K56M plus 23403416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 912 rs5492 ICAM1 3383 19 10255290 NM_000201 NP_000192 C/G K155N plus 6957 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 913 rs5492 ICAM1 3383 19 10255290 NM_000201 NP_000192 C/G K155N plus 6957 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 914 rs5495 ICAM1 3383 19 10256096 NM_000201 NP_000192 A/G V315M plus 6960 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 915 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 6963 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.3 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 916 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 3172763 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.34 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 917 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 4328201 649 FHCRC POPU1 USA (20) 40 0.33 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 918 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 7985472 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 919 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 7985472 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.36 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 920 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 7985472 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 921 rs5498 ICAM1 3383 19 10256683 NM_000201 NP_000192 A/G K469E plus 24796638 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 922 rs5503 ICAM2 3384 17 59436418 NM_000873 NP_000864 A/G A37T minus 6968 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 102 "by submitter,freq,cluster" 17q23-q25 intercellular adhesion molecule 2 923 rs5503 ICAM2 3384 17 59436418 NM_000873 NP_000864 A/G A37T minus 3178070 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.05 102 "by submitter,freq,cluster" 17q23-q25 intercellular adhesion molecule 2 924 rs5504 ICAM2 3384 17 59434789 NM_000873 NP_000864 A/G R199H minus 6969 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q23-q25 intercellular adhesion molecule 2 925 rs5504 ICAM2 3384 17 59434789 NM_000873 NP_000864 A/G R199H minus 6969 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q23-q25 intercellular adhesion molecule 2 926 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 6981 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 927 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 4473299 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 40 0.05 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 928 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 4473299 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 929 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 4473299 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 930 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 23765842 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 931 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 23765842 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 932 rs5515 KLK1 3816 19 56015488 NM_002257 NP_002248 A/G R77H minus 23765842 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 933 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 6982 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 934 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 3250359 738 YUSUKE JBIC-ALLELE Japanese (752) 1436 0.23 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 935 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 4473301 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 936 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 4473301 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.36 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 937 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 4473301 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 938 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 4473301 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 939 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 23765836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 940 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 23765836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 941 rs5516 KLK1 3816 19 56015285 NM_002257 NP_002248 C/G E145Q minus 23765836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 942 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 6983 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.25 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 943 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 4473304 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.15 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 944 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 4473304 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.3 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 945 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 4473304 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 946 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 5005733 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.5 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 947 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 24197628 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 948 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 24197628 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 949 rs5517 KLK1 3816 19 56015044 NM_002257 NP_002248 A/G K186E minus 24197628 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 19q13.3 "kallikrein 1, renal/pancreas/salivary" 950 rs5518 KLK1 3816 19 56015022 NM_002257 NP_002248 A/T V193E minus 6984 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19q13.3 "kallikrein 1, renal/pancreas/salivary" 951 rs5518 KLK1 3816 19 56015022 NM_002257 NP_002248 A/T V193E minus 6984 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19q13.3 "kallikrein 1, renal/pancreas/salivary" 952 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 6988 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.2 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 953 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 10110564 901 AFFY AfAm 12 0.25 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 954 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 10110564 902 AFFY Caucasian 24 0.08 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 955 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 10110564 903 AFFY Asian 12 0.17 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 956 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 10110564 904 AFFY CEPH 12 1 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 957 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 10110564 905 AFFY PDpanel 48 0.1 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 958 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 22887609 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 959 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 23731817 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 960 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 23731817 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 961 rs5522 NR3C2 4306 4 149715080 NM_000901 NP_000892 A/G V180I minus 23731817 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 962 rs5523 NR3C2 4306 4 149714287 NM_000901 NP_000892 A/C N444T minus 6989 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 HapMap 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 963 rs5523 NR3C2 4306 4 149714287 NM_000901 NP_000892 A/C N444T minus 6989 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 52 HapMap 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 964 rs5523 NR3C2 4306 4 149714287 NM_000901 NP_000892 A/C N444T minus 6989 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 965 rs5526 NR3C2 4306 4 149714008 NM_000901 NP_000892 A/G R537Q minus 6992 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 966 rs5526 NR3C2 4306 4 149714008 NM_000901 NP_000892 A/G R537Q minus 6992 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 967 rs5527 NR3C2 4306 4 149713957 NM_000901 NP_000892 A/G N554S minus 6993 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 121 "by cluster,freq" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 968 rs5527 NR3C2 4306 4 149713957 NM_000901 NP_000892 A/G N554S minus 22887611 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 4q31.1 "nuclear receptor subfamily 3, group C, member 2" 969 rs5557 SLC8A1 6546 2 40303739 NM_021097 NP_066920 A/T E692V minus 7023 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 2p23-p22 "solute carrier family 8 (sodium/calcium exchanger), member 1" 970 rs5557 SLC8A1 6546 2 40303739 NM_021097 NP_066920 A/T E692V minus 7023 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2p23-p22 "solute carrier family 8 (sodium/calcium exchanger), member 1" 971 rs5558 SLC6A2 6530 16 54291060 NM_001043 NP_001034 G/T F528C plus 7024 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 123 "by cluster,freq" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 972 rs5558 SLC6A2 6530 16 54291060 NM_001043 NP_001034 G/T F528C plus 7024 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 973 rs5558 SLC6A2 6530 16 54291060 NM_001043 NP_001034 G/T F528C plus 24811976 1303 SEQUENOM CEPH CEPH (92) 184 0.17 123 "by cluster,freq" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 974 rs5559 SLC6A2 6530 16 54291603 NM_001043 NP_001034 C/T Y548H plus 7025 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 975 rs5559 SLC6A2 6530 16 54291603 NM_001043 NP_001034 C/T Y548H plus 7025 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 976 rs5563 SLC6A2 6530 16 54283422 NM_001043 NP_001034 A/C N292T plus 7029 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 977 rs5563 SLC6A2 6530 16 54283422 NM_001043 NP_001034 A/C N292T plus 7029 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 978 rs5565 SLC6A2 6530 16 54286734 NM_001043 NP_001034 C/G V356L plus 7031 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 979 rs5565 SLC6A2 6530 16 54286734 NM_001043 NP_001034 C/G V356L plus 7031 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 980 rs5566 SLC6A2 6530 16 54286773 NM_001043 NP_001034 C/G A369P plus 7032 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 981 rs5566 SLC6A2 6530 16 54286773 NM_001043 NP_001034 C/G A369P plus 7032 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 982 rs5567 SLC6A2 6530 16 54286792 NM_001043 NP_001034 A/G N375S plus 7033 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 983 rs5567 SLC6A2 6530 16 54286792 NM_001043 NP_001034 A/G N375S plus 7033 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 984 rs5570 SLC6A2 6530 16 54289437 NM_001043 NP_001034 A/G K463R plus 7036 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 985 rs5571 NPY 4852 7 24098163 NM_000905 NP_000896 A/C L22M plus 7037 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 7p15.1 neuropeptide Y 986 rs5571 NPY 4852 7 24098163 NM_000905 NP_000896 A/C L22M plus 7037 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7p15.1 neuropeptide Y 987 rs5584 PTGIS 5740 20 47557869 NM_000961 NP_000952 C/T P500S minus 7050 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 988 rs5623 PTGIS 5740 20 47594309 NM_000961 NP_000952 A/C E154A minus 7090 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 989 rs5623 PTGIS 5740 20 47594309 NM_000961 NP_000952 A/C E154A minus 7090 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 990 rs5624 PTGIS 5740 20 47594259 NM_000961 NP_000952 C/T F171L minus 7091 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 991 rs5626 PTGIS 5740 20 47574151 NM_000961 NP_000952 C/T R236C minus 7093 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 992 rs5626 PTGIS 5740 20 47574151 NM_000961 NP_000952 C/T R236C minus 7093 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 20q13.11-q13.13 prostaglandin I2 (prostacyclin) synthase 993 rs5632 PLA2G1B 5319 12 119226531 NM_000928 NP_000919 A/C D16A minus 7099 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 52 by freq 12q23-q24.1 "phospholipase A2, group IB (pancreas)" 994 rs5632 PLA2G1B 5319 12 119226531 NM_000928 NP_000919 A/C D16A minus 7099 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 12q23-q24.1 "phospholipase A2, group IB (pancreas)" 995 rs5636 PLA2G1B 5319 12 119225512 NM_000928 NP_000919 A/C N89K minus 7103 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 12q23-q24.1 "phospholipase A2, group IB (pancreas)" 996 rs5636 PLA2G1B 5319 12 119225512 NM_000928 NP_000919 A/C N89K minus 7103 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 12q23-q24.1 "phospholipase A2, group IB (pancreas)" 997 rs5639 PNMT 5409 17 35079881 NM_002686 NP_002677 A/T S188C plus 7106 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 998 rs5639 PNMT 5409 17 35079881 NM_002686 NP_002677 A/T S188C plus 7106 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 999 rs5640 PNMT 5409 17 35079951 NM_002686 NP_002677 A/T L211H plus 7107 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.15 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 1000 rs5640 PNMT 5409 17 35079951 NM_002686 NP_002677 A/T L211H plus 7107 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 1001 rs5641 PNMT 5409 17 35079969 NM_002686 NP_002677 A/T L217Q plus 7108 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.1 123 "by cluster,freq" 17q21-q22 phenylethanolamine N-methyltransferase 1002 rs5642 PNMT 5409 17 35080080 NM_002686 NP_002677 A/G R254H plus 7109 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 17q21-q22 phenylethanolamine N-methyltransferase 1003 rs5642 PNMT 5409 17 35080080 NM_002686 NP_002677 A/G R254H plus 7109 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q21-q22 phenylethanolamine N-methyltransferase 1004 rs5643 PNMT 5409 17 35080145 NM_002686 NP_002677 A/T W276R plus 7110 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 1005 rs5643 PNMT 5409 17 35080145 NM_002686 NP_002677 A/T W276R plus 7110 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21-q22 phenylethanolamine N-methyltransferase 1006 rs5650 GCG 2641 2 162827605 NM_002054 NP_002045 C/T A115V minus 7117 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 2q36-q37 glucagon 1007 rs5650 GCG 2641 2 162827605 NM_002054 NP_002045 C/T A115V minus 7117 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 2q36-q37 glucagon 1008 rs5658 TRH 7200 3 131177379 NM_007117 NP_009048 C/G L8V minus 7125 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.1 123 "by doubleHit,freq,cluster" 3q13.3-q21 thyrotropin-releasing hormone 1009 rs5658 TRH 7200 3 131177379 NM_007117 NP_009048 C/G L8V minus 1987777 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 3q13.3-q21 thyrotropin-releasing hormone 1010 rs5658 TRH 7200 3 131177379 NM_007117 NP_009048 C/G L8V minus 24164282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 3q13.3-q21 thyrotropin-releasing hormone 1011 rs5658 TRH 7200 3 131177379 NM_007117 NP_009048 C/G L8V minus 24164282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 3q13.3-q21 thyrotropin-releasing hormone 1012 rs5658 TRH 7200 3 131177379 NM_007117 NP_009048 C/G L8V minus 24164282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 3q13.3-q21 thyrotropin-releasing hormone 1013 rs5670 PTGER3 5733 1 71224777 NM_000957 NP_000948 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1014 rs5670 PTGER3 5733 1 71224777 NM_000957 NP_000948 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1015 rs5670 PTGER3 5733 1 71224777 NM_198712 NP_942005 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1016 rs5670 PTGER3 5733 1 71224777 NM_198712 NP_942005 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1017 rs5670 PTGER3 5733 1 71224777 NM_198713 NP_942006 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1018 rs5670 PTGER3 5733 1 71224777 NM_198713 NP_942006 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1019 rs5670 PTGER3 5733 1 71224777 NM_198714 NP_942007 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1020 rs5670 PTGER3 5733 1 71224777 NM_198714 NP_942007 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1021 rs5670 PTGER3 5733 1 71224777 NM_198715 NP_942008 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1022 rs5670 PTGER3 5733 1 71224777 NM_198715 NP_942008 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1023 rs5670 PTGER3 5733 1 71224777 NM_198716 NP_942009 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1024 rs5670 PTGER3 5733 1 71224777 NM_198716 NP_942009 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1025 rs5670 PTGER3 5733 1 71224777 NM_198717 NP_942010 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1026 rs5670 PTGER3 5733 1 71224777 NM_198717 NP_942010 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1027 rs5670 PTGER3 5733 1 71224777 NM_198718 NP_942011 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1028 rs5670 PTGER3 5733 1 71224777 NM_198718 NP_942011 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1029 rs5670 PTGER3 5733 1 71224777 NM_198719 NP_942012 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1030 rs5670 PTGER3 5733 1 71224777 NM_198719 NP_942012 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1031 rs5670 PTGER3 5733 1 71224777 NM_198720 NP_942013 A/T M169L minus 7137 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1032 rs5670 PTGER3 5733 1 71224777 NM_198720 NP_942013 A/T M169L minus 7137 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1033 rs5694 PTGER3 5733 1 71152046 NM_198714 NP_942007 C/T P375L minus 7162 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1034 rs5694 PTGER3 5733 1 71152046 NM_198714 NP_942007 C/T P375L minus 7162 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1035 rs5694 PTGER3 5733 1 71152046 NM_198714 NP_942007 C/T P375L minus 7162 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1036 rs5694 PTGER3 5733 1 71152046 NM_198714 NP_942007 C/T P375L minus 7162 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1037 rs5694 PTGER3 5733 1 71152046 NM_198714 NP_942007 C/T P375L minus 7162 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1038 rs5694 PTGER3 5733 1 71152046 NM_198719 NP_942012 C/T P375L minus 7162 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1039 rs5694 PTGER3 5733 1 71152046 NM_198719 NP_942012 C/T P375L minus 7162 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1040 rs5694 PTGER3 5733 1 71152046 NM_198719 NP_942012 C/T P375L minus 7162 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1041 rs5694 PTGER3 5733 1 71152046 NM_198719 NP_942012 C/T P375L minus 7162 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1042 rs5694 PTGER3 5733 1 71152046 NM_198719 NP_942012 C/T P375L minus 7162 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1043 rs5694 PTGER3 5733 1 71152046 NM_198720 NP_942013 C/T P375L minus 7162 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1044 rs5694 PTGER3 5733 1 71152046 NM_198720 NP_942013 C/T P375L minus 7162 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1045 rs5694 PTGER3 5733 1 71152046 NM_198720 NP_942013 C/T P375L minus 7162 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1046 rs5694 PTGER3 5733 1 71152046 NM_198720 NP_942013 C/T P375L minus 7162 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1047 rs5694 PTGER3 5733 1 71152046 NM_198720 NP_942013 C/T P375L minus 7162 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 1048 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 7181 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1049 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 7181 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1050 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 7181 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1051 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 24390848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1052 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 24390848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1053 rs5713 SAH 6296 16 20694741 NM_005622 NP_005613 C/T L100P plus 24390848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1054 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 7181 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1055 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 7181 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1056 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 7181 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1057 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 24390848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1058 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 24390848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1059 rs5713 SAH 6296 16 20694741 NM_202000 NP_973729 C/T L100P plus 24390848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 16p13.11 SA hypertension-associated homolog (rat) 1060 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 7184 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.05 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1061 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 7184 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1062 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 22887660 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1063 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 23958775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1064 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 23958775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1065 rs5716 SAH 6296 16 20703888 NM_005622 NP_005613 C/G K367N plus 23958775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1066 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 7184 499 ARAVINDA HYP3 "Harare, Zimbabwe (80), Tecumseh, Michigan (64) and CEPH (4)" 148 0.05 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1067 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 7184 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1068 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 22887660 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1069 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 23958775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1070 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 23958775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1071 rs5716 SAH 6296 16 20703888 NM_202000 NP_973729 C/G K367N plus 23958775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 16p13.11 SA hypertension-associated homolog (rat) 1072 rs5733 SCNN1G 6340 16 23105238 NM_001039 NP_001030 G/T G49C plus 7202 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.1 52 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1073 rs5733 SCNN1G 6340 16 23105238 NM_001039 NP_001030 G/T G49C plus 7202 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1074 rs5736 SCNN1G 6340 16 23108422 NM_001039 NP_001030 A/G G183S plus 7205 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1075 rs5736 SCNN1G 6340 16 23108422 NM_001039 NP_001030 A/G G183S plus 7205 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1076 rs5736 SCNN1G 6340 16 23108422 NM_001039 NP_001030 A/G G183S plus 23437191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1077 rs5736 SCNN1G 6340 16 23108422 NM_001039 NP_001030 A/G G183S plus 23437191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1078 rs5736 SCNN1G 6340 16 23108422 NM_001039 NP_001030 A/G G183S plus 23437191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p12 "sodium channel, nonvoltage-gated 1, gamma" 1079 rs5743 TBXA2R 6915 19 3551431 NM_001060 NP_001051 A/T C68S minus 7212 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1080 rs5743 TBXA2R 6915 19 3551431 NM_001060 NP_001051 A/T C68S minus 7212 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1081 rs5744 TBXA2R 6915 19 3551394 NM_001060 NP_001051 A/T V80E minus 7213 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1082 rs5746 TBXA2R 6915 19 3551352 NM_001060 NP_001051 A/T E94V minus 7215 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1083 rs5746 TBXA2R 6915 19 3551352 NM_001060 NP_001051 A/T E94V minus 7215 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1084 rs5749 TBXA2R 6915 19 3551155 NM_001060 NP_001051 A/G A160T minus 7218 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1085 rs5750 TBXA2R 6915 19 3551106 NM_001060 NP_001051 A/T V176E minus 7219 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 19p13.3 thromboxane A2 receptor 1086 rs5750 TBXA2R 6915 19 3551106 NM_001060 NP_001051 A/T V176E minus 7219 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19p13.3 thromboxane A2 receptor 1087 rs5751 TBXA2R 6915 19 3550984 NM_001060 NP_001051 A/G V217I minus 7220 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1088 rs5751 TBXA2R 6915 19 3550984 NM_001060 NP_001051 A/G V217I minus 7220 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19p13.3 thromboxane A2 receptor 1089 rs5760 TBXAS1 6916 7 139160106 NM_001061 NP_001052 G/T G390V plus 7230 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1090 rs5760 TBXAS1 6916 7 139160106 NM_001061 NP_001052 G/T G390V plus 7230 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1091 rs5760 TBXAS1 6916 7 139160106 NM_030984 NP_112246 G/T G390V plus 7230 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1092 rs5760 TBXAS1 6916 7 139160106 NM_030984 NP_112246 G/T G390V plus 7230 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1093 rs5762 TBXAS1 6916 7 139168750 NM_001061 NP_001052 C/T R425C plus 7233 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1094 rs5762 TBXAS1 6916 7 139168750 NM_001061 NP_001052 C/T R425C plus 7233 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1095 rs5762 TBXAS1 6916 7 139168750 NM_030984 NP_112246 C/T R425C plus 7233 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1096 rs5762 TBXAS1 6916 7 139168750 NM_030984 NP_112246 C/T R425C plus 7233 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1097 rs5763 TBXAS1 6916 7 139168829 NM_001061 NP_001052 A/C T451N plus 7236 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1098 rs5763 TBXAS1 6916 7 139168829 NM_001061 NP_001052 A/C T451N plus 7236 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1099 rs5763 TBXAS1 6916 7 139168829 NM_001061 NP_001052 A/C T451N plus 7236 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1100 rs5763 TBXAS1 6916 7 139168829 NM_030984 NP_112246 A/C T451N plus 7236 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1101 rs5763 TBXAS1 6916 7 139168829 NM_030984 NP_112246 A/C T451N plus 7236 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1102 rs5763 TBXAS1 6916 7 139168829 NM_030984 NP_112246 A/C T451N plus 7236 1303 SEQUENOM CEPH CEPH (92) 92 1 52 "HapMap,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1103 rs5768 TBXAS1 6916 7 139106380 NM_001061 NP_001052 G/T E161D minus 7241 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 121 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1104 rs5768 TBXAS1 6916 7 139106380 NM_030984 NP_112246 G/T E161D minus 7241 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 121 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1105 rs5769 TBXAS1 6916 7 139110697 NM_001061 NP_001052 A/G K258E plus 7242 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1106 rs5769 TBXAS1 6916 7 139110697 NM_001061 NP_001052 A/G K258E plus 7242 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1107 rs5769 TBXAS1 6916 7 139110697 NM_001061 NP_001052 A/G K258E plus 23766889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1108 rs5769 TBXAS1 6916 7 139110697 NM_001061 NP_001052 A/G K258E plus 23766889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1109 rs5769 TBXAS1 6916 7 139110697 NM_001061 NP_001052 A/G K258E plus 23766889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1110 rs5769 TBXAS1 6916 7 139110697 NM_030984 NP_112246 A/G K258E plus 7242 497 ARAVINDA HYP1 "Harare, Zimbabwe (80)" 80 0.05 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1111 rs5769 TBXAS1 6916 7 139110697 NM_030984 NP_112246 A/G K258E plus 7242 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1112 rs5769 TBXAS1 6916 7 139110697 NM_030984 NP_112246 A/G K258E plus 23766889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1113 rs5769 TBXAS1 6916 7 139110697 NM_030984 NP_112246 A/G K258E plus 23766889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1114 rs5769 TBXAS1 6916 7 139110697 NM_030984 NP_112246 A/G K258E plus 23766889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1115 rs5770 TBXAS1 6916 7 139110706 NM_001061 NP_001052 A/G R261G plus 7243 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1116 rs5770 TBXAS1 6916 7 139110706 NM_001061 NP_001052 A/G R261G plus 7243 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1117 rs5770 TBXAS1 6916 7 139110706 NM_001061 NP_001052 A/G R261G plus 7243 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1118 rs5770 TBXAS1 6916 7 139110706 NM_030984 NP_112246 A/G R261G plus 7243 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1119 rs5770 TBXAS1 6916 7 139110706 NM_030984 NP_112246 A/G R261G plus 7243 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1120 rs5770 TBXAS1 6916 7 139110706 NM_030984 NP_112246 A/G R261G plus 7243 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1121 rs5771 TBXAS1 6916 7 139115028 NM_001061 NP_001052 A/C Q317K plus 7244 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1122 rs5771 TBXAS1 6916 7 139115028 NM_001061 NP_001052 A/C Q317K plus 7244 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1123 rs5771 TBXAS1 6916 7 139115028 NM_030984 NP_112246 A/C Q317K plus 7244 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1124 rs5771 TBXAS1 6916 7 139115028 NM_030984 NP_112246 A/C Q317K plus 7244 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1125 rs5774 TRHR 7201 8 110168947 NM_003301 NP_003292 A/C N10K plus 7248 498 ARAVINDA HYP2 "Tecumseh, Michigan (64) and CEPH (4)" 68 0.05 52 HapMap 8q23 thyrotropin-releasing hormone receptor 1126 rs5774 TRHR 7201 8 110168947 NM_003301 NP_003292 A/C N10K plus 7248 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 8q23 thyrotropin-releasing hormone receptor 1127 rs5774 TRHR 7201 8 110168947 NM_003301 NP_003292 A/C N10K plus 7248 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 8q23 thyrotropin-releasing hormone receptor 1128 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5105630 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1129 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5105630 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.04 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1130 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1131 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1132 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 776 SNP500CANCER AFR1 African / African-American (24) 48 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1133 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1134 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1135 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1136 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 5586853 1303 SEQUENOM CEPH CEPH (92) 92 0.04 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1137 rs5789 PTGS1 5742 9 122223527 NM_000962 NP_000953 A/C L237M plus 14327574 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1138 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5105630 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1139 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5105630 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.04 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1140 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1141 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1142 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 776 SNP500CANCER AFR1 African / African-American (24) 48 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1143 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1144 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1145 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1146 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 5586853 1303 SEQUENOM CEPH CEPH (92) 92 0.04 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1147 rs5789 PTGS1 5742 9 122223527 NM_080591 NP_542158 A/C L237M plus 14327574 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1148 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1149 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1150 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1151 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1152 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1153 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1154 rs5791 PTGS1 5742 9 122228345 NM_000962 NP_000953 A/G K359R plus 5586855 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1155 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1156 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1157 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1158 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1159 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1160 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1161 rs5791 PTGS1 5742 9 122228345 NM_080591 NP_542158 A/G K359R plus 5586855 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1162 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1163 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1164 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1165 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1166 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1167 rs5792 PTGS1 5742 9 122232061 NM_000962 NP_000953 A/G I443V plus 5586856 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1168 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1169 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1170 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1171 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1172 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1173 rs5792 PTGS1 5742 9 122232061 NM_080591 NP_542158 A/G I406V plus 5586856 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1174 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1175 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1176 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1177 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1178 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1179 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1180 rs5793 PTGS1 5742 9 122232133 NM_000962 NP_000953 A/G K467E plus 5586857 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1181 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1182 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1183 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1184 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1185 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1186 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1187 rs5793 PTGS1 5742 9 122232133 NM_080591 NP_542158 A/G K430E plus 5586857 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1188 rs5794 PTGS1 5742 9 122232175 NM_000962 NP_000953 A/G V481I plus 5586858 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1189 rs5794 PTGS1 5742 9 122232175 NM_000962 NP_000953 A/G V481I plus 5586858 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.03 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1190 rs5794 PTGS1 5742 9 122232175 NM_000962 NP_000953 A/G V481I plus 5586858 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1191 rs5794 PTGS1 5742 9 122232175 NM_000962 NP_000953 A/G V481I plus 5586858 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1192 rs5794 PTGS1 5742 9 122232175 NM_000962 NP_000953 A/G V481I plus 5586858 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1193 rs5794 PTGS1 5742 9 122232175 NM_080591 NP_542158 A/G V444I plus 5586858 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1194 rs5794 PTGS1 5742 9 122232175 NM_080591 NP_542158 A/G V444I plus 5586858 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.03 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1195 rs5794 PTGS1 5742 9 122232175 NM_080591 NP_542158 A/G V444I plus 5586858 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1196 rs5794 PTGS1 5742 9 122232175 NM_080591 NP_542158 A/G V444I plus 5586858 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1197 rs5794 PTGS1 5742 9 122232175 NM_080591 NP_542158 A/G V444I plus 5586858 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1198 rs5811 SLC2A1 6513 1 43064460 NM_006516 NP_006507 A/C K255T minus 7286 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 1p35-p31.3 "solute carrier family 2 (facilitated glucose transporter), member 1" 1199 rs5811 SLC2A1 6513 1 43064460 NM_006516 NP_006507 A/C K255T minus 7286 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 1p35-p31.3 "solute carrier family 2 (facilitated glucose transporter), member 1" 1200 rs5856 NOL5A 10528 20 2586882 NM_006392 NP_006383 C/T V576A plus 8464 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.35 121 "by doubleHit,freq,cluster" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 1201 rs5856 NOL5A 10528 20 2586882 NM_006392 NP_006383 C/T V576A plus 3208480 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.24 121 "by doubleHit,freq,cluster" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 1202 rs5856 NOL5A 10528 20 2586882 NM_006392 NP_006383 C/T V576A plus 5420265 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "by doubleHit,freq,cluster" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 1203 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 7482 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.1 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1204 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 20419136 1232 PHARMGKB_PARC PA129964588 142 0.01 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1205 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 20419188 1232 PHARMGKB_PARC PA129964588 142 0.01 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1206 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 20419188 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1207 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 23418077 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1208 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 23418077 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1209 rs5880 CETP 1071 16 55572592 NM_000078 NP_000069 C/G A390P plus 23418077 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q21 "cholesteryl ester transfer protein, plasma" 1210 rs5881 CETP 1071 16 55569513 NM_000078 NP_000069 A/G G331S plus 7483 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.03 52 HapMap 16q21 "cholesteryl ester transfer protein, plasma" 1211 rs5881 CETP 1071 16 55569513 NM_000078 NP_000069 A/G G331S plus 7483 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 16q21 "cholesteryl ester transfer protein, plasma" 1212 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 7484 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.33 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1213 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 20419079 1232 PHARMGKB_PARC PA129964588 142 0.43 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1214 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 20419137 1232 PHARMGKB_PARC PA129964588 142 0.43 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1215 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 23991710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1216 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 23991710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1217 rs5882 CETP 1071 16 55573593 NM_000078 NP_000069 A/G V422I plus 23991710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 1218 rs5887 CETP 1071 16 55575053 NM_000078 NP_000069 A/G V486M plus 7489 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.03 123 by freq 16q21 "cholesteryl ester transfer protein, plasma" 1219 rs5887 CETP 1071 16 55575053 NM_000078 NP_000069 A/G V486M plus 7489 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 16q21 "cholesteryl ester transfer protein, plasma" 1220 rs5893 F2R 2149 5 76064302 NM_001992 NP_001983 A/G S166G plus 7495 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 5q13 coagulation factor II (thrombin) receptor 1221 rs5893 F2R 2149 5 76064302 NM_001992 NP_001983 A/G S166G plus 7495 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 5q13 coagulation factor II (thrombin) receptor 1222 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 7498 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 126 0.1 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1223 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 4384736 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1224 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 4384736 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1225 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 4384736 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1226 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 4384736 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1227 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 24181221 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1228 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 24181221 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1229 rs5896 F2 2147 11 46701579 NM_000506 NP_000497 C/T T165M plus 24181221 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "HapMap,submitter,freq,cluster" 11p11-q12 coagulation factor II (thrombin) 1230 rs5897 F2 2147 11 46706147 NM_000506 NP_000497 A/C P386T plus 7499 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 128 0.03 52 HapMap 11p11-q12 coagulation factor II (thrombin) 1231 rs5897 F2 2147 11 46706147 NM_000506 NP_000497 A/C P386T plus 7499 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 11p11-q12 coagulation factor II (thrombin) 1232 rs5897 F2 2147 11 46706147 NM_000506 NP_000497 A/C P386T plus 7499 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 11p11-q12 coagulation factor II (thrombin) 1233 rs5901 F3 2152 1 94710771 NM_001993 NP_001984 C/T R163W minus 7503 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 121 "by cluster,freq" 1p22-p21 "coagulation factor III (thromboplastin, tissue factor)" 1234 rs5901 F3 2152 1 94710771 NM_001993 NP_001984 C/T R163W minus 22887063 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 1p22-p21 "coagulation factor III (thromboplastin, tissue factor)" 1235 rs5904 SERPIND1 3053 22 19465733 NM_000185 NP_000176 C/T T442M plus 7506 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1236 rs5904 SERPIND1 3053 22 19465733 NM_000185 NP_000176 C/T T442M plus 7506 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1237 rs5904 SERPIND1 3053 22 19465733 NM_000185 NP_000176 C/T T442M plus 7506 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1238 rs5905 SERPIND1 3053 22 19458173 NM_000185 NP_000176 A/G A7T plus 7507 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1239 rs5905 SERPIND1 3053 22 19458173 NM_000185 NP_000176 A/G A7T plus 7507 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1240 rs5907 SERPIND1 3053 22 19458777 NM_000185 NP_000176 A/G R208H plus 7509 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1241 rs5907 SERPIND1 3053 22 19458777 NM_000185 NP_000176 A/G R208H plus 7509 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1242 rs5907 SERPIND1 3053 22 19458777 NM_000185 NP_000176 A/G R208H plus 7509 1303 SEQUENOM CEPH CEPH (92) 92 0.06 52 HapMap 22q11.21 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1" 1243 rs5911 ITGA2B 3674 17 39808591 NM_000419 NP_000410 A/C I874S plus 7514 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 112 0.1 121 "HapMap,doubleHit,freq,cluster" 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1244 rs5911 ITGA2B 3674 17 39808591 NM_000419 NP_000410 A/C I874S plus 2394254 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.3 121 "HapMap,doubleHit,freq,cluster" 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1245 rs5911 ITGA2B 3674 17 39808591 NM_000419 NP_000410 A/C I874S plus 3232317 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.43 121 "HapMap,doubleHit,freq,cluster" 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1246 rs5914 ITGA2B 3674 17 39807594 NM_000419 NP_000410 A/T Y968N minus 7517 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 112 0.03 52 by freq 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1247 rs5914 ITGA2B 3674 17 39807594 NM_000419 NP_000410 A/T Y968N minus 7517 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1248 rs5915 ITGA2B 3674 17 39822249 NM_000419 NP_000410 C/T T40I minus 7518 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 112 0.03 52 HapMap 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1249 rs5915 ITGA2B 3674 17 39822249 NM_000419 NP_000410 C/T T40I minus 7518 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1250 rs5915 ITGA2B 3674 17 39822249 NM_000419 NP_000410 C/T T40I minus 7518 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 1251 rs5917 ITGB3 3690 17 42716952 NM_000212 NP_000203 A/G R169Q plus 7520 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 121 "by cluster,freq" 17q21.32 "integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)" 1252 rs5917 ITGB3 3690 17 42716952 NM_000212 NP_000203 A/G R169Q plus 22887369 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21.32 "integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)" 1253 rs5918 ITGB3 3690 17 42715729 NM_000212 NP_000203 C/T L59P plus 7521 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 98 0.1 52 by freq 17q21.32 "integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)" 1254 rs5921 ITGB3 3690 17 42724600 NM_000212 NP_000203 A/G V453I plus 7526 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 17q21.32 "integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)" 1255 rs5921 ITGB3 3690 17 42724600 NM_000212 NP_000203 A/G V453I plus 7526 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17q21.32 "integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)" 1256 rs5928 LDLR 3949 19 11101240 NM_000527 NP_000518 A/G R814Q plus 7533 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 126 0.03 52 by freq 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 1257 rs5928 LDLR 3949 19 11101240 NM_000527 NP_000518 A/G R814Q plus 7533 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 1258 rs5931 LDLR 3949 19 11061228 NM_000527 NP_000518 C/G G2R plus 7537 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 126 0.03 52 HapMap 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 1259 rs5931 LDLR 3949 19 11061228 NM_000527 NP_000518 C/G G2R plus 7537 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 52 HapMap 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 1260 rs5931 LDLR 3949 19 11061228 NM_000527 NP_000518 C/G G2R plus 7537 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 1261 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 7545 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.03 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1262 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 7545 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1263 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 4924163 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.1 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1264 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 24141575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1265 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 24141575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1266 rs5938 PTAFR 5724 1 28161004 NM_000952 NP_000943 A/C A224D minus 24141575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 1p35-p34.3 platelet-activating factor receptor 1267 rs5939 PTAFR 5724 1 28160662 NM_000952 NP_000943 A/G N338S minus 7546 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 114 0.03 123 "by submitter,freq,cluster" 1p35-p34.3 platelet-activating factor receptor 1268 rs5939 PTAFR 5724 1 28160662 NM_000952 NP_000943 A/G N338S minus 7546 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1p35-p34.3 platelet-activating factor receptor 1269 rs5939 PTAFR 5724 1 28160662 NM_000952 NP_000943 A/G N338S minus 23668297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1p35-p34.3 platelet-activating factor receptor 1270 rs5939 PTAFR 5724 1 28160662 NM_000952 NP_000943 A/G N338S minus 23668297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 1p35-p34.3 platelet-activating factor receptor 1271 rs5939 PTAFR 5724 1 28160662 NM_000952 NP_000943 A/G N338S minus 23668297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 1p35-p34.3 platelet-activating factor receptor 1272 rs5940 TFPI 7035 2 188157210 NM_006287 NP_006278 A/G V292M minus 7548 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 100 0.03 52 by freq 2q31-q32.1 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 1273 rs5940 TFPI 7035 2 188157210 NM_006287 NP_006278 A/G V292M minus 7548 1303 SEQUENOM CEPH CEPH (92) 92 0.04 52 by freq 2q31-q32.1 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 1274 rs5948 ANXA3 306 4 79875673 NM_005139 NP_005130 A/T I219N plus 7557 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 "by submitter,freq,cluster" 4q13-q22 annexin A3 1275 rs5948 ANXA3 306 4 79875673 NM_005139 NP_005130 A/T I219N plus 23166719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 4q13-q22 annexin A3 1276 rs5948 ANXA3 306 4 79875673 NM_005139 NP_005130 A/T I219N plus 23166719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 4q13-q22 annexin A3 1277 rs5948 ANXA3 306 4 79875673 NM_005139 NP_005130 A/T I219N plus 23166719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 4q13-q22 annexin A3 1278 rs5951 ANXA3 306 4 79851553 NM_005139 NP_005130 A/G S19N plus 7560 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 4q13-q22 annexin A3 1279 rs5951 ANXA3 306 4 79851553 NM_005139 NP_005130 A/G S19N plus 7560 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q13-q22 annexin A3 1280 rs5954 APOD 347 3 529568 NM_001647 NP_001638 C/T S115L minus 7564 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 3q26.2-qter apolipoprotein D 1281 rs5961 F10 2159 13 112831786 NM_000504 NP_000495 C/G Q30H plus 7571 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 "by cluster,freq" 13q34 coagulation factor X 1282 rs5961 F10 2159 13 112831786 NM_000504 NP_000495 C/G Q30H plus 7571 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 13q34 coagulation factor X 1283 rs5961 F10 2159 13 112831786 NM_000504 NP_000495 C/G Q30H plus 23736939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q34 coagulation factor X 1284 rs5961 F10 2159 13 112831786 NM_000504 NP_000495 C/G Q30H plus 23736939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 13q34 coagulation factor X 1285 rs5961 F10 2159 13 112831786 NM_000504 NP_000495 C/G Q30H plus 23736939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q34 coagulation factor X 1286 rs5963 F10 2159 13 112825189 NM_000504 NP_000495 A/C L7I plus 7573 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 13q34 coagulation factor X 1287 rs5963 F10 2159 13 112825189 NM_000504 NP_000495 A/C L7I plus 7573 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q34 coagulation factor X 1288 rs5967 F11 2160 4 187576676 NM_000128 NP_000119 G/T C339F plus 5609926 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 30 0.07 123 "by cluster,freq" 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1289 rs5967 F11 2160 4 187576676 NM_000128 NP_000119 G/T C339F plus 5609926 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1290 rs5967 F11 2160 4 187576676 NM_000128 NP_000119 G/T C339F plus 23275072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1291 rs5967 F11 2160 4 187576676 NM_000128 NP_000119 G/T C339F plus 23275072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1292 rs5967 F11 2160 4 187576676 NM_000128 NP_000119 G/T C339F plus 23275072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1293 rs5968 F11 2160 4 187568053 NM_000128 NP_000119 C/T P66L plus 7578 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1294 rs5968 F11 2160 4 187568053 NM_000128 NP_000119 C/T P66L plus 7578 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1295 rs5969 F11 2160 4 187572669 NM_000128 NP_000119 A/G Q244R plus 7579 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1296 rs5969 F11 2160 4 187572669 NM_000128 NP_000119 A/G Q244R plus 7579 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1297 rs5972 F11 2160 4 187576582 NM_000128 NP_000119 A/T I308F plus 7582 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1298 rs5972 F11 2160 4 187576582 NM_000128 NP_000119 A/T I308F plus 7582 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q35 coagulation factor XI (plasma thromboplastin antecedent) 1299 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 7592 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.1 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1300 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 4250318 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 38 0.11 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1301 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 4250318 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.27 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1302 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 4250318 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1303 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 24334604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1304 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 24334604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1305 rs5982 F13A1 2162 6 6119865 NM_000129 NP_000120 C/T P565L minus 24334604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1306 rs5983 F13A1 2162 6 6112832 NM_000129 NP_000120 A/T L589Q minus 7593 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1307 rs5984 F13A1 2162 6 6119907 NM_000129 NP_000120 C/T T551I minus 7594 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 by freq 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1308 rs5984 F13A1 2162 6 6119907 NM_000129 NP_000120 C/T T551I minus 7594 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1309 rs5985 F13A1 2162 6 6263794 NM_000129 NP_000120 G/T V35L minus 7595 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 120 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1310 rs5985 F13A1 2162 6 6263794 NM_000129 NP_000120 G/T V35L minus 4250177 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.2 120 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1311 rs5985 F13A1 2162 6 6263794 NM_000129 NP_000120 G/T V35L minus 4250177 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.24 120 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1312 rs5985 F13A1 2162 6 6263794 NM_000129 NP_000120 G/T V35L minus 19693415 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,freq,cluster" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1313 rs5987 F13A1 2162 6 6097139 NM_000129 NP_000120 A/G V651I minus 7597 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.1 121 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1314 rs5987 F13A1 2162 6 6097139 NM_000129 NP_000120 A/G V651I minus 4250337 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 121 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1315 rs5987 F13A1 2162 6 6097139 NM_000129 NP_000120 A/G V651I minus 4250337 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 121 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1316 rs5987 F13A1 2162 6 6097139 NM_000129 NP_000120 A/G V651I minus 4250337 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1317 rs5988 F13A1 2162 6 6097136 NM_000129 NP_000120 C/G E652Q minus 7598 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.33 123 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1318 rs5988 F13A1 2162 6 6097136 NM_000129 NP_000120 C/G E652Q minus 4250338 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.17 123 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1319 rs5988 F13A1 2162 6 6097136 NM_000129 NP_000120 C/G E652Q minus 4250338 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.28 123 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1320 rs5988 F13A1 2162 6 6097136 NM_000129 NP_000120 C/G E652Q minus 4250338 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by cluster,freq" 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 1321 rs6000 F13B 2165 1 193751515 NM_001994 NP_001985 G/T D569E minus 7610 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1322 rs6000 F13B 2165 1 193751515 NM_001994 NP_001985 G/T D569E minus 7610 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1323 rs6001 F13B 2165 1 193751594 NM_001994 NP_001985 A/C Y543S minus 7611 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1324 rs6001 F13B 2165 1 193751594 NM_001994 NP_001985 A/C Y543S minus 7611 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1325 rs6002 F13B 2165 1 193763764 NM_001994 NP_001985 A/G M49V minus 7612 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1326 rs6002 F13B 2165 1 193763764 NM_001994 NP_001985 A/G M49V minus 7612 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1327 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 7613 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.33 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1328 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 2660016 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1329 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 700 PSU-ANTH NIGERIA_(BENIN) Nigerian 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1330 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 701 PSU-ANTH NIGERIA_(IBADAN) Nigerian 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1331 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 702 PSU-ANTH SIERRA_LEONE_(MENDE) Sierra Leone 183 0.33 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1332 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 704 PSU-ANTH CENTRAL_AFRICAN_REPUBLIC Central African Republic 52 0.3 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1333 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 705 PSU-ANTH GERMANY German 30 0.02 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1334 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 706 PSU-ANTH SPAIN Spanish 79 0.1 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1335 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 709 PSU-ANTH MAYAN Mexico 96 0.04 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1336 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 4387024 710 PSU-ANTH SOUTH-WESTERN_NATIVE_AMERICANS USA 88 0.02 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1337 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 23165253 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1338 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 23165253 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1339 rs6003 F13B 2165 1 193762678 NM_001994 NP_001985 A/G R115H minus 23165253 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,submitter,freq,cluster" 1q31-q32.1 "coagulation factor XIII, B polypeptide" 1340 rs6005 F5 2153 1 166242548 NM_000130 NP_000121 C/G H1146Q minus 12674299 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1341 rs6005 F5 2153 1 166242548 NM_000130 NP_000121 C/G H1146Q minus 12674299 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1342 rs6018 F5 2153 1 166243536 NM_000130 NP_000121 G/T N817T plus 7630 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.1 123 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1343 rs6018 F5 2153 1 166243536 NM_000130 NP_000121 G/T N817T plus 3178030 619 WICVAR MITOGPOP6 CORIELL Mixed 158 0.01 123 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1344 rs6018 F5 2153 1 166243536 NM_000130 NP_000121 G/T N817T plus 5169449 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1345 rs6018 F5 2153 1 166243536 NM_000130 NP_000121 G/T N817T plus 12674293 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 123 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1346 rs6018 F5 2153 1 166243536 NM_000130 NP_000121 G/T N817T plus 12674293 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 123 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1347 rs6019 F5 2153 1 166273171 NM_000130 NP_000121 C/G D107H minus 7632 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.1 119 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1348 rs6019 F5 2153 1 166273171 NM_000130 NP_000121 C/G D107H minus 12674137 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.33 119 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1349 rs6019 F5 2153 1 166273171 NM_000130 NP_000121 C/G D107H minus 12674137 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 119 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1350 rs6019 F5 2153 1 166273171 NM_000130 NP_000121 C/G D107H minus 12674137 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1351 rs6020 F5 2153 1 166250770 NM_000130 NP_000121 A/G R513K minus 7633 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 126 0.33 121 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1352 rs6020 F5 2153 1 166250770 NM_000130 NP_000121 A/G R513K minus 12674254 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.35 121 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1353 rs6020 F5 2153 1 166250770 NM_000130 NP_000121 A/G R513K minus 12674254 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1354 rs6026 F5 2153 1 166228950 NM_000130 NP_000121 A/G M1820I minus 7640 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1355 rs6026 F5 2153 1 166228950 NM_000130 NP_000121 A/G M1820I minus 7640 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1356 rs6027 F5 2153 1 166215219 NM_000130 NP_000121 A/G D2222G minus 7641 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1357 rs6027 F5 2153 1 166215219 NM_000130 NP_000121 A/G D2222G minus 3156385 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1358 rs6027 F5 2153 1 166215219 NM_000130 NP_000121 A/G D2222G minus 24264219 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1359 rs6027 F5 2153 1 166215219 NM_000130 NP_000121 A/G D2222G minus 24264219 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1360 rs6027 F5 2153 1 166215219 NM_000130 NP_000121 A/G D2222G minus 24264219 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1361 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 7644 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1362 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 3126849 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1363 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 3126849 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1364 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 24264378 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1365 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 24264378 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1366 rs6030 F5 2153 1 166230633 NM_000130 NP_000121 A/G M1764V minus 24264378 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1367 rs6031 F5 2153 1 166243561 NM_000130 NP_000121 C/T P809S minus 7645 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 123 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1368 rs6031 F5 2153 1 166243561 NM_000130 NP_000121 C/T P809S minus 12674292 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.19 123 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1369 rs6031 F5 2153 1 166243561 NM_000130 NP_000121 C/T P809S minus 12674292 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1370 rs6032 F5 2153 1 166243213 NM_000130 NP_000121 A/G K925E minus 7646 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.1 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1371 rs6032 F5 2153 1 166243213 NM_000130 NP_000121 A/G K925E minus 3195260 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.24 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1372 rs6032 F5 2153 1 166243213 NM_000130 NP_000121 A/G K925E minus 12674296 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.27 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1373 rs6032 F5 2153 1 166243213 NM_000130 NP_000121 A/G K925E minus 12674296 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.23 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1374 rs6032 F5 2153 1 166243213 NM_000130 NP_000121 A/G K925E minus 12674296 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1375 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 7647 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 126 0.1 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1376 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 62472 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.1 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1377 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 62472 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1378 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 62472 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.08 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1379 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 12674236 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 38 0.03 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1380 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 12674236 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.09 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1381 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 24264607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1382 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 24264607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1383 rs6033 F5 2153 1 166253511 NM_000130 NP_000121 A/G M413T plus 24264607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 1q23 "coagulation factor V (proaccelerin, labile factor)" 1384 rs6034 F5 2153 1 166230678 NM_000130 NP_000121 C/G L1749V minus 7648 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1385 rs6034 F5 2153 1 166230678 NM_000130 NP_000121 C/G L1749V minus 7648 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 1386 rs6045 F7 2155 13 112820806 NM_000131 NP_000122 A/T V295D plus 7659 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 123 by freq 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1387 rs6045 F7 2155 13 112820806 NM_019616 NP_062562 A/T V273D plus 7659 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 123 by freq 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1388 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 7660 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1389 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 703548 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1390 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 703548 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1391 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 703548 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 186 0.12 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1392 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 4328443 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1393 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 4328443 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1394 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 4328443 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1395 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 14866746 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1396 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 14866746 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1397 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 23736857 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1398 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 23736857 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1399 rs6046 F7 2155 13 112821160 NM_000131 NP_000122 C/T R413Q minus 23736857 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1400 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 7660 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1401 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 703548 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1402 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 703548 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1403 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 703548 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 186 0.12 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1404 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 4328443 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1405 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 4328443 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1406 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 4328443 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1407 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 14866746 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1408 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 14866746 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1409 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 23736857 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1410 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 23736857 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1411 rs6046 F7 2155 13 112821160 NM_019616 NP_062562 C/T R391Q minus 23736857 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 1412 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 7664 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.33 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1413 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 2982181 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 21 0.5 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1414 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 2982181 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.2 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1415 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 17810442 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1416 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 24154884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1417 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 24154884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1418 rs6050 FGA 2243 4 155865195 NM_000508 NP_000499 A/G T331A minus 24154884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1419 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 7664 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.33 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1420 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 2982181 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 21 0.5 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1421 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 2982181 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.2 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1422 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 17810442 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1423 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 24154884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1424 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 24154884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1425 rs6050 FGA 2243 4 155865195 NM_021871 NP_068657 A/G T331A minus 24154884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 4q28 "fibrinogen, A alpha polypeptide" 1426 rs6052 FGA 2243 4 155864850 NM_000508 NP_000499 A/G K446E minus 7666 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 4q28 "fibrinogen, A alpha polypeptide" 1427 rs6052 FGA 2243 4 155864850 NM_000508 NP_000499 A/G K446E minus 7666 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q28 "fibrinogen, A alpha polypeptide" 1428 rs6052 FGA 2243 4 155864850 NM_021871 NP_068657 A/G K446E minus 7666 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 108 0.03 52 by freq 4q28 "fibrinogen, A alpha polypeptide" 1429 rs6052 FGA 2243 4 155864850 NM_021871 NP_068657 A/G K446E minus 7666 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4q28 "fibrinogen, A alpha polypeptide" 1430 rs6065 GP1BA 2811 17 4777161 NM_000173 NP_000164 C/T T161M plus 3199559 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.17 121 "by cluster,freq" 17pter-p12 "glycoprotein Ib (platelet), alpha polypeptide" 1431 rs6065 GP1BA 2811 17 4777161 NM_000173 NP_000164 C/T T161M plus 3199559 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 121 "by cluster,freq" 17pter-p12 "glycoprotein Ib (platelet), alpha polypeptide" 1432 rs6065 GP1BA 2811 17 4777161 NM_000173 NP_000164 C/T T161M plus 3199559 1303 SEQUENOM CEPH CEPH (92) 92 0.05 121 "by cluster,freq" 17pter-p12 "glycoprotein Ib (platelet), alpha polypeptide" 1433 rs6068 GP1BA 2811 17 4776894 NM_000173 NP_000164 A/G R72H plus 7685 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 98 0.03 52 by freq 17pter-p12 "glycoprotein Ib (platelet), alpha polypeptide" 1434 rs6068 GP1BA 2811 17 4776894 NM_000173 NP_000164 A/G R72H plus 7685 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 17pter-p12 "glycoprotein Ib (platelet), alpha polypeptide" 1435 rs6078 LIPC 3990 15 56621285 NM_000236 NP_000227 A/G V95M plus 7695 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.1 123 "HapMap,freq" 15q21-q23 "lipase, hepatic" 1436 rs6078 LIPC 3990 15 56621285 NM_000236 NP_000227 A/G V95M plus 7695 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.03 123 "HapMap,freq" 15q21-q23 "lipase, hepatic" 1437 rs6078 LIPC 3990 15 56621285 NM_000236 NP_000227 A/G V95M plus 24224736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 15q21-q23 "lipase, hepatic" 1438 rs6078 LIPC 3990 15 56621285 NM_000236 NP_000227 A/G V95M plus 24224736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq" 15q21-q23 "lipase, hepatic" 1439 rs6078 LIPC 3990 15 56621285 NM_000236 NP_000227 A/G V95M plus 24224736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq" 15q21-q23 "lipase, hepatic" 1440 rs6079 LIPC 3990 15 56643145 NM_000236 NP_000227 A/G S440N plus 7696 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 HapMap 15q21-q23 "lipase, hepatic" 1441 rs6079 LIPC 3990 15 56643145 NM_000236 NP_000227 A/G S440N plus 7696 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 15q21-q23 "lipase, hepatic" 1442 rs6079 LIPC 3990 15 56643145 NM_000236 NP_000227 A/G S440N plus 7696 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 15q21-q23 "lipase, hepatic" 1443 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 7700 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.33 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1444 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 6587908 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1445 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 6587908 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1446 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 12587368 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.38 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1447 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 24718495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1448 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 24718495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1449 rs6083 LIPC 3990 15 56625302 NM_000236 NP_000227 A/G N215S plus 24718495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 15q21-q23 "lipase, hepatic" 1450 rs6087 MPL 4352 1 43472956 NM_005373 NP_005364 C/T A58V plus 7704 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.03 52 by freq 1p34 myeloproliferative leukemia virus oncogene 1451 rs6087 MPL 4352 1 43472956 NM_005373 NP_005364 C/T A58V plus 7704 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 myeloproliferative leukemia virus oncogene 1452 rs6088 MPL 4352 1 43474145 NM_005373 NP_005364 A/G E168K plus 7705 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 52 by freq 1p34 myeloproliferative leukemia virus oncogene 1453 rs6088 MPL 4352 1 43474145 NM_005373 NP_005364 A/G E168K plus 7705 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p34 myeloproliferative leukemia virus oncogene 1454 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 7707 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1455 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 7707 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.17 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1456 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 7707 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1457 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 7707 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1458 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 3172223 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1459 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 3172223 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1460 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 3172223 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1461 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 23411103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1462 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 23411103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1463 rs6090 SERPINE1 5054 7 100365158 NM_000602 NP_000593 A/G V17I plus 23411103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1464 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 7709 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.1 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1465 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 7709 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1466 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 7709 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1467 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 7709 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.14 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1468 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 3172290 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 0.25 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1469 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 3172290 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1470 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 23987545 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1471 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 23987545 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1472 rs6092 SERPINE1 5054 7 100365152 NM_000602 NP_000593 A/G A15T plus 23987545 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.12 123 "by cluster,freq" 7q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" 1473 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 7715 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1474 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 3094604 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1475 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 3094604 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1476 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 23531315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1477 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 23531315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1478 rs6098 SERPINB2 5055 18 59715374 NM_002575 NP_002566 A/G N120D plus 23531315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1479 rs6100 SERPINB2 5055 18 59720625 NM_002575 NP_002566 A/G R229H plus 7717 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 96 0.03 52 HapMap 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1480 rs6100 SERPINB2 5055 18 59720625 NM_002575 NP_002566 A/G R229H plus 7717 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1481 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1482 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 901 AFFY AfAm 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1483 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 902 AFFY Caucasian 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1484 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 903 AFFY Asian 12 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1485 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 904 AFFY CEPH 12 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1486 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 7720 905 AFFY PDpanel 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1487 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 14303771 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1488 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 14303771 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1489 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 23531504 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1490 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 23531504 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1491 rs6103 SERPINB2 5055 18 59721483 NM_002575 NP_002566 C/G N404K plus 23531504 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1492 rs6104 SERPINB2 5055 18 59721509 NM_002575 NP_002566 C/G S413C plus 7721 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.33 123 "by doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1493 rs6104 SERPINB2 5055 18 59721509 NM_002575 NP_002566 C/G S413C plus 14303772 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1494 rs6104 SERPINB2 5055 18 59721509 NM_002575 NP_002566 C/G S413C plus 23531513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1495 rs6104 SERPINB2 5055 18 59721509 NM_002575 NP_002566 C/G S413C plus 23531513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1496 rs6104 SERPINB2 5055 18 59721509 NM_002575 NP_002566 C/G S413C plus 23531513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2" 1497 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 7731 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1498 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 2982134 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.07 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1499 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 14388996 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1500 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 23648731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1501 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 23648731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1502 rs6114 SERPINA5 5104 14 94126160 NM_000624 NP_000615 C/G G217R plus 23648731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1503 rs6115 SERPINA5 5104 14 94123643 NM_000624 NP_000615 A/G S64N plus 7732 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.1 120 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1504 rs6115 SERPINA5 5104 14 94123643 NM_000624 NP_000615 A/G S64N plus 1382288 1303 SEQUENOM CEPH CEPH (92) 92 0.23 120 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1505 rs6115 SERPINA5 5104 14 94123643 NM_000624 NP_000615 A/G S64N plus 2982120 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.11 120 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1506 rs6115 SERPINA5 5104 14 94123643 NM_000624 NP_000615 A/G S64N plus 2982120 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.37 120 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1507 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 7735 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.1 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1508 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 1372189 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1509 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 2982119 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.43 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1510 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 2982119 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1511 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 23648710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1512 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 23648710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1513 rs6118 SERPINA5 5104 14 94123616 NM_000624 NP_000615 C/T A55V plus 23648710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1514 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 7736 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1515 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 2982123 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 38 0.47 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1516 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 2982123 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.09 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1517 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 12279178 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1518 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 23648718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1519 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 23648718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1520 rs6119 SERPINA5 5104 14 94123765 NM_000624 NP_000615 A/G K105E plus 23648718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1521 rs6120 SERPINA5 5104 14 94123813 NM_000624 NP_000615 C/G P121A plus 7737 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 52 by freq 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1522 rs6120 SERPINA5 5104 14 94123813 NM_000624 NP_000615 C/G P121A plus 7737 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" 1523 rs6125 SELP 6403 1 166313975 NM_003005 NP_002996 A/G V209M minus 5111836 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.05 108 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1524 rs6125 SELP 6403 1 166313975 NM_003005 NP_002996 A/G V209M minus 5111836 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 108 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1525 rs6125 SELP 6403 1 166313975 NM_003005 NP_002996 A/G V209M minus 5111836 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1526 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 7744 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.33 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1527 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 5111936 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.24 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1528 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 5111936 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.45 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1529 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 24796122 1303 SEQUENOM CEPH CEPH (92) 184 0.31 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1530 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 24811825 1303 SEQUENOM CEPH CEPH (92) 184 0.47 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1531 rs6127 SELP 6403 1 166297971 NM_003005 NP_002996 A/G D603N minus 24811973 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1532 rs6130 SELP 6403 1 166307865 NM_003005 NP_002996 C/T S500F minus 7747 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1533 rs6130 SELP 6403 1 166307865 NM_003005 NP_002996 C/T S500F minus 7747 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1534 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 7748 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.1 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1535 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 5111846 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.25 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1536 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 5111846 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.13 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1537 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 5111846 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1538 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 23188337 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1539 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 23188337 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1540 rs6131 SELP 6403 1 166312543 NM_003005 NP_002996 A/G S331N minus 23188337 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1541 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 7750 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 104 0.33 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1542 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 5111948 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.46 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1543 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 5111948 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1544 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 5111948 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1545 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 23161353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1546 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 23161353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1547 rs6133 SELP 6403 1 166297004 NM_003005 NP_002996 G/T V640L minus 23161353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1548 rs6134 SELP 6403 1 166312442 NM_003005 NP_002996 A/G M365V minus 7751 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 52 by freq 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1549 rs6134 SELP 6403 1 166312442 NM_003005 NP_002996 A/G M365V minus 7751 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1550 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 7753 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.1 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1551 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 5111969 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1552 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 5111969 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.14 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1553 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 5111969 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1554 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 24265196 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1555 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 24265196 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1556 rs6136 SELP 6403 1 166295609 NM_003005 NP_002996 A/C T756P minus 24265196 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq,cluster" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 1557 rs6140 TBXAS1 6916 7 139115074 NM_001061 NP_001052 C/T I332T plus 7760 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 123 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1558 rs6140 TBXAS1 6916 7 139115074 NM_001061 NP_001052 C/T I332T plus 7760 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1559 rs6140 TBXAS1 6916 7 139115074 NM_030984 NP_112246 C/T I332T plus 7760 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 102 0.03 123 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1560 rs6140 TBXAS1 6916 7 139115074 NM_030984 NP_112246 C/T I332T plus 7760 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 1561 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 7770 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 106 0.03 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1562 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 7770 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1563 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 15698506 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1564 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 23765125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1565 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 23765125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1566 rs6149 VLDLR 7436 9 2625545 NM_003383 NP_003374 A/G V59I plus 23765125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 9p24 very low density lipoprotein receptor 1567 rs6165 FSHR 2492 2 49102692 NM_000145 NP_000136 A/G A307T minus 7786 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 82 0.33 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1568 rs6165 FSHR 2492 2 49102692 NM_000145 NP_000136 A/G A307T minus 14308073 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1569 rs6165 FSHR 2492 2 49102692 NM_000145 NP_000136 A/G A307T minus 24250694 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1570 rs6165 FSHR 2492 2 49102692 NM_000145 NP_000136 A/G A307T minus 24250694 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1571 rs6165 FSHR 2492 2 49102692 NM_000145 NP_000136 A/G A307T minus 24250694 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1572 rs6165 FSHR 2492 2 49102692 NM_181446 NP_852111 A/G A245T minus 7786 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 82 0.33 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1573 rs6165 FSHR 2492 2 49102692 NM_181446 NP_852111 A/G A245T minus 14308073 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1574 rs6165 FSHR 2492 2 49102692 NM_181446 NP_852111 A/G A245T minus 24250694 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1575 rs6165 FSHR 2492 2 49102692 NM_181446 NP_852111 A/G A245T minus 24250694 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1576 rs6165 FSHR 2492 2 49102692 NM_181446 NP_852111 A/G A245T minus 24250694 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 "by cluster,freq" 2p21-p16 follicle stimulating hormone receptor 1577 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 7787 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 84 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1578 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 5586543 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.38 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1579 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 5586543 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1580 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 5586543 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1581 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 5586543 777 SNP500CANCER HISP1 Hispanic (23) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1582 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 5586543 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1583 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 11457643 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1584 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 11457643 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1585 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 24250675 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1586 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 24250675 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1587 rs6166 FSHR 2492 2 49101572 NM_000145 NP_000136 A/G S680N minus 24250675 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1588 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 7787 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 84 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1589 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 5586543 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.38 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1590 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 5586543 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1591 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 5586543 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1592 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 5586543 777 SNP500CANCER HISP1 Hispanic (23) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1593 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 5586543 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1594 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 11457643 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1595 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 11457643 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1596 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 24250675 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1597 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 24250675 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1598 rs6166 FSHR 2492 2 49101572 NM_181446 NP_852111 A/G S618N minus 24250675 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 2p21-p16 follicle stimulating hormone receptor 1599 rs6167 FSHR 2492 2 49102039 NM_000145 NP_000136 C/G S524R minus 7788 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 123 by freq 2p21-p16 follicle stimulating hormone receptor 1600 rs6167 FSHR 2492 2 49102039 NM_000145 NP_000136 C/G S524R minus 7788 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 2p21-p16 follicle stimulating hormone receptor 1601 rs6167 FSHR 2492 2 49102039 NM_181446 NP_852111 C/G S462R minus 7788 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 123 by freq 2p21-p16 follicle stimulating hormone receptor 1602 rs6167 FSHR 2492 2 49102039 NM_181446 NP_852111 C/G S462R minus 7788 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 2p21-p16 follicle stimulating hormone receptor 1603 rs6174 GH1 2688 17 59348994 NM_000515 NP_000506 C/G S105C minus 7795 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 HapMap 17q24.2 growth hormone 1 1604 rs6174 GH1 2688 17 59348994 NM_000515 NP_000506 C/G S105C minus 7795 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 17q24.2 growth hormone 1 1605 rs6174 GH1 2688 17 59348994 NM_022559 NP_072053 C/G S90C minus 7795 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 HapMap 17q24.2 growth hormone 1 1606 rs6174 GH1 2688 17 59348994 NM_022559 NP_072053 C/G S90C minus 7795 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 17q24.2 growth hormone 1 1607 rs6174 GH1 2688 17 59348994 NM_022560 NP_072054 C/G S65C minus 7795 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 HapMap 17q24.2 growth hormone 1 1608 rs6174 GH1 2688 17 59348994 NM_022560 NP_072054 C/G S65C minus 7795 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 17q24.2 growth hormone 1 1609 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 7802 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1610 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 2123222 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.4 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1611 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 2123222 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.32 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1612 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 2123222 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.5 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1613 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 2123222 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.47 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1614 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 2123222 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1615 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 6903813 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.44 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1616 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 6903813 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.42 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1617 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 6903813 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1618 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 6903813 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1619 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 6903813 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.44 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1620 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 24423132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1621 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 24423132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1622 rs6180 GHR 2690 5 42754996 NM_000163 NP_000154 A/C I544L plus 24423132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 5p13-p12 growth hormone receptor 1623 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 7803 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1624 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1625 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1626 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1627 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1628 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1629 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1630 rs6181 GHR 2690 5 42735779 NM_000163 NP_000154 A/G R179H plus 8819745 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "HapMap,cluster" 5p13-p12 growth hormone receptor 1631 rs6182 GHR 2690 5 42754685 NM_000163 NP_000154 G/T C440F plus 7804 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.1 123 "by submitter,freq,cluster" 5p13-p12 growth hormone receptor 1632 rs6182 GHR 2690 5 42754685 NM_000163 NP_000154 G/T C440F plus 7804 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 5p13-p12 growth hormone receptor 1633 rs6182 GHR 2690 5 42754685 NM_000163 NP_000154 G/T C440F plus 23984036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by submitter,freq,cluster" 5p13-p12 growth hormone receptor 1634 rs6182 GHR 2690 5 42754685 NM_000163 NP_000154 G/T C440F plus 23984036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by submitter,freq,cluster" 5p13-p12 growth hormone receptor 1635 rs6182 GHR 2690 5 42754685 NM_000163 NP_000154 G/T C440F plus 23984036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 5p13-p12 growth hormone receptor 1636 rs6183 GHR 2690 5 42754849 NM_000163 NP_000154 A/C P495T plus 7805 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 by freq 5p13-p12 growth hormone receptor 1637 rs6183 GHR 2690 5 42754849 NM_000163 NP_000154 A/C P495T plus 7805 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 5p13-p12 growth hormone receptor 1638 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 7806 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.1 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1639 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1640 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1641 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1642 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1643 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1644 rs6184 GHR 2690 5 42755101 NM_000163 NP_000154 A/C P579T plus 6903812 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 5p13-p12 growth hormone receptor 1645 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 7807 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1646 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 3247131 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1647 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 5586544 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1648 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 5586544 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1649 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 5586544 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1650 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 5586544 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1651 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 5586544 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1652 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 6731916 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1653 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 6731916 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1654 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 24053467 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1655 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 24053467 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1656 rs6185 GNRH1 2796 8 25336717 NM_000825 NP_000816 C/G W16S minus 24053467 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 gonadotropin-releasing hormone 1 (leutinizing-releasing hormone) 1657 rs6190 NR3C1 2908 5 142760530 NM_000176 NP_000167 A/G R23K minus 14865729 693 EGP_SNPS PDR90 NIHPDR 152 0.01 119 "by cluster,freq" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1658 rs6190 NR3C1 2908 5 142760530 NM_000176 NP_000167 A/G R23K minus 14865729 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "by cluster,freq" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1659 rs6192 NR3C1 2908 5 142760405 NM_000176 NP_000167 G/T F65V minus 7814 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 119 "HapMap,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1660 rs6192 NR3C1 2908 5 142760405 NM_000176 NP_000167 G/T F65V minus 14865730 693 EGP_SNPS PDR90 NIHPDR 152 0.01 119 "HapMap,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1661 rs6192 NR3C1 2908 5 142760405 NM_000176 NP_000167 G/T F65V minus 14865730 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1662 rs6192 NR3C1 2908 5 142760405 NM_000176 NP_000167 G/T F65V minus 14865730 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "HapMap,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1663 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1664 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1665 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 901 AFFY AfAm 12 1 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1666 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 902 AFFY Caucasian 24 0.08 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1667 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 903 AFFY Asian 12 1 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1668 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 904 AFFY CEPH 12 1 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1669 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 7817 905 AFFY PDpanel 48 0.02 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1670 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 16339024 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.02 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1671 rs6195 NR3C1 2908 5 142759510 NM_000176 NP_000167 A/G N363S minus 16339024 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,freq,cluster" 5q31 "nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" 1672 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 5586591 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1673 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 5586591 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1674 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 5586591 776 SNP500CANCER AFR1 African / African-American (24) 48 0.29 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1675 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 5586591 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1676 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 5586591 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1677 rs6201 HSD3B1 3283 1 119766257 NM_000862 NP_000853 A/G I79V plus 24811836 1303 SEQUENOM CEPH CEPH (92) 184 0.47 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1678 rs6205 HSD3B1 3283 1 119769044 NM_000862 NP_000853 C/T F286L plus 7827 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 1679 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 7833 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1680 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1681 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1682 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1683 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1684 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1685 rs6211 HSD3B2 3284 1 119674220 NM_000198 NP_000189 C/G E94Q plus 5586599 1303 SEQUENOM CEPH CEPH (92) 92 0.18 113 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 1686 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 7854 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1687 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 7854 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1688 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 7854 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1689 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 24445734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1690 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 24445734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1691 rs6232 PCSK1 5122 5 95777541 NM_000439 NP_000430 A/G N221D minus 24445734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1692 rs6234 PCSK1 5122 5 95754730 NM_000439 NP_000430 C/G Q665E minus 7856 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 84 0.33 123 "by cluster,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1693 rs6234 PCSK1 5122 5 95754730 NM_000439 NP_000430 C/G Q665E minus 7856 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by cluster,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1694 rs6234 PCSK1 5122 5 95754730 NM_000439 NP_000430 C/G Q665E minus 24001977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1695 rs6234 PCSK1 5122 5 95754730 NM_000439 NP_000430 C/G Q665E minus 24001977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1696 rs6234 PCSK1 5122 5 95754730 NM_000439 NP_000430 C/G Q665E minus 24001977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1697 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 7857 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.1 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1698 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 7857 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1699 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 7857 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1700 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 24001971 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1701 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 24001971 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1702 rs6235 PCSK1 5122 5 95754654 NM_000439 NP_000430 C/G S690T minus 24001971 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 5q15-q21 proprotein convertase subtilisin/kexin type 1 1703 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.08 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1704 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.1 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1705 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1706 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1707 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.09 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1708 rs6259 SHBG 6462 17 7477252 NM_001040 NP_001031 A/G D356N plus 5586913 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by cluster,freq" 17p13-p12 sex hormone-binding globulin 1709 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 7883 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1710 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1711 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1712 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1713 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1714 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1715 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1716 rs6260 SHBG 6462 17 7474289 NM_001040 NP_001031 A/G R25H plus 12675622 1303 SEQUENOM CEPH CEPH (92) 92 1 118 "HapMap,freq,cluster" 17p13-p12 sex hormone-binding globulin 1717 rs6262 DDC 1644 7 50370129 NM_000790 NP_000781 C/T P210L minus 16361341 693 EGP_SNPS PDR90 NIHPDR 180 0.01 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1718 rs6262 DDC 1644 7 50370129 NM_000790 NP_000781 C/T P210L minus 16361341 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1719 rs6262 DDC 1644 7 50370129 NM_000790 NP_000781 C/T P210L minus 16361341 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1720 rs6263 DDC 1644 7 50370109 NM_000790 NP_000781 A/G M217V minus 16361342 693 EGP_SNPS PDR90 NIHPDR 180 0.03 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1721 rs6263 DDC 1644 7 50370109 NM_000790 NP_000781 A/G M217V minus 16361342 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.04 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1722 rs6263 DDC 1644 7 50370109 NM_000790 NP_000781 A/G M217V minus 16361342 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,freq,cluster" 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 1723 rs6265 BDNF 627 11 27636492 NM_001709 NP_001700 A/G V66M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1724 rs6265 BDNF 627 11 27636492 NM_001709 NP_001700 A/G V66M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1725 rs6265 BDNF 627 11 27636492 NM_001709 NP_001700 A/G V66M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1726 rs6265 BDNF 627 11 27636492 NM_001709 NP_001700 A/G V66M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1727 rs6265 BDNF 627 11 27636492 NM_001709 NP_001700 A/G V66M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1728 rs6265 BDNF 627 11 27636492 NM_170731 NP_733927 A/G V74M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1729 rs6265 BDNF 627 11 27636492 NM_170731 NP_733927 A/G V74M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1730 rs6265 BDNF 627 11 27636492 NM_170731 NP_733927 A/G V74M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1731 rs6265 BDNF 627 11 27636492 NM_170731 NP_733927 A/G V74M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1732 rs6265 BDNF 627 11 27636492 NM_170731 NP_733927 A/G V74M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1733 rs6265 BDNF 627 11 27636492 NM_170732 NP_733928 A/G V66M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1734 rs6265 BDNF 627 11 27636492 NM_170732 NP_733928 A/G V66M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1735 rs6265 BDNF 627 11 27636492 NM_170732 NP_733928 A/G V66M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1736 rs6265 BDNF 627 11 27636492 NM_170732 NP_733928 A/G V66M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1737 rs6265 BDNF 627 11 27636492 NM_170732 NP_733928 A/G V66M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1738 rs6265 BDNF 627 11 27636492 NM_170733 NP_733929 A/G V66M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1739 rs6265 BDNF 627 11 27636492 NM_170733 NP_733929 A/G V66M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1740 rs6265 BDNF 627 11 27636492 NM_170733 NP_733929 A/G V66M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1741 rs6265 BDNF 627 11 27636492 NM_170733 NP_733929 A/G V66M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1742 rs6265 BDNF 627 11 27636492 NM_170733 NP_733929 A/G V66M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1743 rs6265 BDNF 627 11 27636492 NM_170734 NP_733930 A/G V81M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1744 rs6265 BDNF 627 11 27636492 NM_170734 NP_733930 A/G V81M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1745 rs6265 BDNF 627 11 27636492 NM_170734 NP_733930 A/G V81M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1746 rs6265 BDNF 627 11 27636492 NM_170734 NP_733930 A/G V81M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1747 rs6265 BDNF 627 11 27636492 NM_170734 NP_733930 A/G V81M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1748 rs6265 BDNF 627 11 27636492 NM_170735 NP_733931 A/G V66M minus 7889 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.33 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1749 rs6265 BDNF 627 11 27636492 NM_170735 NP_733931 A/G V66M minus 12586728 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1750 rs6265 BDNF 627 11 27636492 NM_170735 NP_733931 A/G V66M minus 24149102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1751 rs6265 BDNF 627 11 27636492 NM_170735 NP_733931 A/G V66M minus 24149102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1752 rs6265 BDNF 627 11 27636492 NM_170735 NP_733931 A/G V66M minus 24149102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11p13 brain-derived neurotrophic factor 1753 rs6266 CNTF 1270 11 58148513 NM_000614 NP_000605 A/G H182R plus 7890 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 52 by freq 11q12.2 ciliary neurotrophic factor 1754 rs6266 CNTF 1270 11 58148513 NM_000614 NP_000605 A/G H182R plus 7890 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 11q12.2 ciliary neurotrophic factor 1755 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 4479991 506 NCBI NIHPDR NIHPDR 76 0.07 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1756 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 6903718 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1757 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 6903718 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1758 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 6903718 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1759 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 6903718 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1760 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 6903718 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1761 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 12673755 693 EGP_SNPS PDR90 NIHPDR 164 0.06 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1762 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 12673755 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1763 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 24211194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1764 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 24211194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1765 rs6267 COMT 1312 22 18324817 NM_000754 NP_000745 G/T A72S plus 24211194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1766 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 4479991 506 NCBI NIHPDR NIHPDR 76 0.07 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1767 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 6903718 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1768 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 6903718 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1769 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 6903718 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1770 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 6903718 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1771 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 6903718 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1772 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 12673755 693 EGP_SNPS PDR90 NIHPDR 164 0.06 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1773 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 12673755 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1774 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 24211194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1775 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 24211194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1776 rs6267 COMT 1312 22 18324817 NM_007310 NP_009294 G/T A22S plus 24211194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 1777 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 7895 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 70 0.33 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1778 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1779 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1780 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1781 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1782 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1783 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1784 rs6270 COMT 1312 22 18324704 NM_000754 NP_000745 C/G C34S plus 5606262 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,cluster" 22q11.21 catechol-O-methyltransferase 1785 rs6271 DBH 1621 9 133551828 NM_000787 NP_000778 C/T R535C plus 7898 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.1 123 "by submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 1786 rs6271 DBH 1621 9 133551828 NM_000787 NP_000778 C/T R535C plus 7898 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by submitter,freq,cluster" 9q34 dopamine beta-hydroxylase (dopamine beta-monooxygenase) 1787 rs6280 DRD3 1814 3 115373505 NM_000796 NP_000787 C/T G9S plus 7908 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1788 rs6280 DRD3 1814 3 115373505 NM_000796 NP_000787 C/T G9S plus 1893415 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1789 rs6280 DRD3 1814 3 115373505 NM_000796 NP_000787 C/T G9S plus 1893415 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1790 rs6280 DRD3 1814 3 115373505 NM_000796 NP_000787 C/T G9S plus 6312535 583 KIDDLAB PO000020C 182 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1791 rs6280 DRD3 1814 3 115373505 NM_033658 NP_387507 C/T G9S plus 7908 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1792 rs6280 DRD3 1814 3 115373505 NM_033658 NP_387507 C/T G9S plus 1893415 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1793 rs6280 DRD3 1814 3 115373505 NM_033658 NP_387507 C/T G9S plus 1893415 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1794 rs6280 DRD3 1814 3 115373505 NM_033658 NP_387507 C/T G9S plus 6312535 583 KIDDLAB PO000020C 182 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1795 rs6280 DRD3 1814 3 115373505 NM_033659 NP_387508 C/T G9S plus 7908 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1796 rs6280 DRD3 1814 3 115373505 NM_033659 NP_387508 C/T G9S plus 1893415 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1797 rs6280 DRD3 1814 3 115373505 NM_033659 NP_387508 C/T G9S plus 1893415 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1798 rs6280 DRD3 1814 3 115373505 NM_033659 NP_387508 C/T G9S plus 6312535 583 KIDDLAB PO000020C 182 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1799 rs6280 DRD3 1814 3 115373505 NM_033660 NP_387509 C/T G9S plus 7908 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1800 rs6280 DRD3 1814 3 115373505 NM_033660 NP_387509 C/T G9S plus 1893415 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1801 rs6280 DRD3 1814 3 115373505 NM_033660 NP_387509 C/T G9S plus 1893415 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1802 rs6280 DRD3 1814 3 115373505 NM_033660 NP_387509 C/T G9S plus 6312535 583 KIDDLAB PO000020C 182 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 3q13.3 dopamine receptor D3 1803 rs6282 DRD5 1816 4 9460185 NM_000798 NP_000789 G/T L88R plus 7910 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.1 52 by freq 4p16.1 dopamine receptor D5 1804 rs6282 DRD5 1816 4 9460185 NM_000798 NP_000789 G/T L88R plus 7910 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 4p16.1 dopamine receptor D5 1805 rs6299 HTR1D 3352 1 23265225 NM_000864 NP_000855 C/T S265L minus 7927 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 78 0.03 52 by freq 1p36.3-p34.3 5-hydroxytryptamine (serotonin) receptor 1D 1806 rs6299 HTR1D 3352 1 23265225 NM_000864 NP_000855 C/T S265L minus 7927 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 1p36.3-p34.3 5-hydroxytryptamine (serotonin) receptor 1D 1807 rs6303 HTR1E 3354 6 87782556 NM_000865 NP_000856 C/T S262F plus 7931 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 52 by freq 6q14-q15 5-hydroxytryptamine (serotonin) receptor 1E 1808 rs6303 HTR1E 3354 6 87782556 NM_000865 NP_000856 C/T S262F plus 7931 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 6q14-q15 5-hydroxytryptamine (serotonin) receptor 1E 1809 rs6308 HTR2A 3356 13 46307049 NM_000621 NP_000612 C/T A447V minus 7936 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 72 0.03 52 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1810 rs6308 HTR2A 3356 13 46307049 NM_000621 NP_000612 C/T A447V minus 7936 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1811 rs6314 HTR2A 3356 13 46307035 NM_000621 NP_000612 C/T H452Y minus 7942 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 76 0.1 123 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1812 rs6314 HTR2A 3356 13 46307035 NM_000621 NP_000612 C/T H452Y minus 7942 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1813 rs6314 HTR2A 3356 13 46307035 NM_000621 NP_000612 C/T H452Y minus 24431808 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1814 rs6314 HTR2A 3356 13 46307035 NM_000621 NP_000612 C/T H452Y minus 24431808 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1815 rs6314 HTR2A 3356 13 46307035 NM_000621 NP_000612 C/T H452Y minus 24431808 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 1816 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 7958 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1817 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 4044499 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1818 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 4044499 1303 SEQUENOM CEPH CEPH (92) 92 0.4 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1819 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 4954390 738 YUSUKE JBIC-ALLELE Japanese (752) 920 0.17 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1820 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 15356259 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.25 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1821 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 15356259 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.45 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1822 rs6330 NGFB 4803 1 115541355 NM_002506 NP_002497 C/T A35V minus 15356259 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 1p13.1 "nerve growth factor, beta polypeptide" 1823 rs6336 NTRK1 4914 1 153661991 NM_002529 NP_002520 C/T H604Y plus 7964 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1824 rs6336 NTRK1 4914 1 153661991 NM_002529 NP_002520 C/T H604Y plus 6416724 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1825 rs6336 NTRK1 4914 1 153661991 NM_002529 NP_002520 C/T H604Y plus 28447275 914 HG_BONN_CNS_SNPS EURO96 European 182 0.07 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1826 rs6339 NTRK1 4914 1 153662019 NM_002529 NP_002520 G/T G613V plus 7967 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1827 rs6339 NTRK1 4914 1 153662019 NM_002529 NP_002520 G/T G613V plus 6416725 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1828 rs6339 NTRK1 4914 1 153662019 NM_002529 NP_002520 G/T G613V plus 28447276 914 HG_BONN_CNS_SNPS EURO96 European 182 0.07 123 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 1829 rs6355 SLC6A4 6532 17 25572936 NM_001045 NP_001036 C/G G56A minus 7983 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.03 52 by freq 17q11.1-q12 "solute carrier family 6 (neurotransmitter transporter, serotonin), member 4" 1830 rs6355 SLC6A4 6532 17 25572936 NM_001045 NP_001036 C/G G56A minus 7983 1303 SEQUENOM CEPH CEPH (92) 92 0.01 52 by freq 17q11.1-q12 "solute carrier family 6 (neurotransmitter transporter, serotonin), member 4" 1831 rs6356 TH 7054 11 2147527 NM_000360 NP_000351 A/G V81M minus 7984 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1832 rs6356 TH 7054 11 2147527 NM_000360 NP_000351 A/G V81M minus 7984 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1833 rs6356 TH 7054 11 2147527 NM_000360 NP_000351 A/G V81M minus 16316425 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1834 rs6356 TH 7054 11 2147527 NM_199292 NP_954986 A/G V112M minus 7984 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1835 rs6356 TH 7054 11 2147527 NM_199292 NP_954986 A/G V112M minus 7984 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1836 rs6356 TH 7054 11 2147527 NM_199292 NP_954986 A/G V112M minus 16316425 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1837 rs6356 TH 7054 11 2147527 NM_199293 NP_954987 A/G V108M minus 7984 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 74 0.33 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1838 rs6356 TH 7054 11 2147527 NM_199293 NP_954987 A/G V108M minus 7984 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1839 rs6356 TH 7054 11 2147527 NM_199293 NP_954987 A/G V108M minus 16316425 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,freq" 11p15.5 tyrosine hydroxylase 1840 rs6405 CYP11B1 1584 8 143958203 NM_000497 NP_000488 A/G C10Y minus 8043 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 1841 rs6405 CYP11B1 1584 8 143958203 NM_000497 NP_000488 A/G C10Y minus 8043 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 1842 rs6407 CYP11B1 1584 8 143954209 NM_000497 NP_000488 A/G A348T minus 8046 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 1843 rs6407 CYP11B1 1584 8 143954209 NM_000497 NP_000488 A/G A348T minus 8046 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 8q21 "cytochrome P450, family 11, subfamily B, polypeptide 1" 1844 rs6438 CYP11B2 1585 8 143996174 NM_000498 NP_000489 A/G A29T minus 8081 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 84 0.03 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 1845 rs6438 CYP11B2 1585 8 143996174 NM_000498 NP_000489 A/G A29T minus 23370114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 1846 rs6438 CYP11B2 1585 8 143996174 NM_000498 NP_000489 A/G A29T minus 23370114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 1847 rs6438 CYP11B2 1585 8 143996174 NM_000498 NP_000489 A/G A29T minus 23370114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q21-q22 "cytochrome P450, family 11, subfamily B, polypeptide 2" 1848 rs6472 CYP21A2 1589 6 32115828 NM_000500 NP_000491 C/G S269T plus 8123 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.33 123 "by cluster,freq" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1849 rs6472 CYP21A2 1589 6 32115828 NM_000500 NP_000491 C/G S269T plus 2990663 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.1 123 "by cluster,freq" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1850 rs6472 CYP21A2 1589 6 32115828 NM_000500 NP_000491 C/G S269T plus 13097014 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1851 rs6472 CYP21A2 1589 6 32115828 NM_000500 NP_000491 C/G S269T plus 24796289 1303 SEQUENOM CEPH CEPH (92) 184 0.25 123 "by cluster,freq" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1852 rs6474 CYP21A2 1589 6 32114865 NM_000500 NP_000491 A/G R103K plus 8125 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 84 0.33 113 "by doubleHit,freq,cluster" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1853 rs6476 CYP21A2 1589 6 32115572 NM_000500 NP_000491 A/T M240K plus 8127 504 WIAF-CSNP WIAF-CSNP-POP1 "European (30), Asians (14) African Americans (10) and African Pygmies (7)" 86 0.03 120 "by doubleHit,freq,cluster" 6p21.3 "cytochrome P450, family 21, subfamily A, polypeptide 2" 1854 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 8154 507 WIAF-CSNP WIAF-CSNP-MITOGPOP2 European (10) and African American (10) 38 0.03 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1855 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1856 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1857 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1858 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1859 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1860 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 6903928 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1861 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 23349845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1862 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 23349845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1863 rs6501 RECQL 5965 12 21515836 NM_002907 NP_002898 A/C K487T minus 23349845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1864 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 8154 507 WIAF-CSNP WIAF-CSNP-MITOGPOP2 European (10) and African American (10) 38 0.03 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1865 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1866 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1867 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1868 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1869 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1870 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 6903928 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1871 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 23349845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1872 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 23349845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1873 rs6501 RECQL 5965 12 21515836 NM_032941 NP_116559 A/C K487T minus 23349845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 1874 rs6504 P11 8909 12 46398209 NM_006025 NP_006016 C/G E31Q minus 8161 507 WIAF-CSNP WIAF-CSNP-MITOGPOP2 European (10) and African American (10) 36 0.1 52 by freq 12q13.1 26 serine protease 1875 rs6505 P11 8909 12 46398208 NM_006025 NP_006016 A/T E31V minus 8162 507 WIAF-CSNP WIAF-CSNP-MITOGPOP2 European (10) and African American (10) 36 0.1 52 by freq 12q13.1 26 serine protease 1876 rs6508 WIT-1 51352 11 32417040 NM_015855 NP_056939 A/G A13T plus 8166 507 WIAF-CSNP WIAF-CSNP-MITOGPOP2 European (10) and African American (10) 34 0.1 123 "by cluster,freq" 11p13 Wilms tumor associated protein 1877 rs6508 WIT-1 51352 11 32417040 NM_015855 NP_056939 A/G A13T plus 17430401 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by cluster,freq" 11p13 Wilms tumor associated protein 1878 rs6508 WIT-1 51352 11 32417040 NM_015855 NP_056939 A/G A13T plus 23494328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 11p13 Wilms tumor associated protein 1879 rs6508 WIT-1 51352 11 32417040 NM_015855 NP_056939 A/G A13T plus 23494328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by cluster,freq" 11p13 Wilms tumor associated protein 1880 rs6508 WIT-1 51352 11 32417040 NM_015855 NP_056939 A/G A13T plus 23494328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p13 Wilms tumor associated protein 1881 rs6510 SPAG1 6674 8 101322005 NM_003114 NP_003105 C/T H827Y plus 8170 508 WIAF-CSNP WIAF-CSNP-MITOGPOP1 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.1 52 HapMap 8q22.2 sperm associated antigen 1 1882 rs6510 SPAG1 6674 8 101322005 NM_003114 NP_003105 C/T H827Y plus 8170 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 8q22.2 sperm associated antigen 1 1883 rs6510 SPAG1 6674 8 101322005 NM_003114 NP_003105 C/T H827Y plus 8170 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 8q22.2 sperm associated antigen 1 1884 rs6510 SPAG1 6674 8 101322005 NM_172218 NP_757367 C/T H827Y plus 8170 508 WIAF-CSNP WIAF-CSNP-MITOGPOP1 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.1 52 HapMap 8q22.2 sperm associated antigen 1 1885 rs6510 SPAG1 6674 8 101322005 NM_172218 NP_757367 C/T H827Y plus 8170 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 52 HapMap 8q22.2 sperm associated antigen 1 1886 rs6510 SPAG1 6674 8 101322005 NM_172218 NP_757367 C/T H827Y plus 8170 1303 SEQUENOM CEPH CEPH (92) 92 1 52 HapMap 8q22.2 sperm associated antigen 1 1887 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 8171 508 WIAF-CSNP WIAF-CSNP-MITOGPOP1 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.33 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1888 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 2964004 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1889 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 2964004 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1890 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 3243620 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.49 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1891 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 23996181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1892 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 23996181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1893 rs6511 SPAG1 6674 8 101321856 NM_003114 NP_003105 C/T M777T plus 23996181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1894 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 8171 508 WIAF-CSNP WIAF-CSNP-MITOGPOP1 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.33 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1895 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 2964004 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1896 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 2964004 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1897 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 3243620 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.49 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1898 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 23996181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1899 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 23996181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1900 rs6511 SPAG1 6674 8 101321856 NM_172218 NP_757367 C/T M777T plus 23996181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 8q22.2 sperm associated antigen 1 1901 rs6525 BMP8A 353500 1 39657177 NM_181809 NP_861525 A/G R293H plus 8185 508 WIAF-CSNP WIAF-CSNP-MITOGPOP1 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 121 "by doubleHit,freq,cluster" 1p34.2 bone morphogenetic protein 8a 1902 rs6525 BMP8A 353500 1 39657177 NM_181809 NP_861525 A/G R293H plus 17934 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.31 121 "by doubleHit,freq,cluster" 1p34.2 bone morphogenetic protein 8a 1903 rs6525 BMP8A 353500 1 39657177 NM_181809 NP_861525 A/G R293H plus 20433475 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "by doubleHit,freq,cluster" 1p34.2 bone morphogenetic protein 8a 1904 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 545447 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1905 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 545447 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.32 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1906 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 545447 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.15 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1907 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 545447 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.28 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1908 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.28 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1909 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.25 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1910 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.32 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1911 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1912 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 902 AFFY Caucasian 24 0.38 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1913 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 903 AFFY Asian 12 0.25 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1914 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 904 AFFY CEPH 12 0.33 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1915 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 905 AFFY PDpanel 46 0.24 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1916 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 1412171 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1917 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 4474558 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.32 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1918 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 24652496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1919 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 24652496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1920 rs6574 MPHOSPH10 10199 2 71288654 NM_005791 NP_005782 C/T E634K minus 24652496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 1921 rs6577 GSTA2 2939 6 52723374 NM_000846 NP_000837 A/C E210A minus 869782 506 NCBI NIHPDR NIHPDR 78 0.29 120 "by doubleHit,submitter,freq,cluster" 6p12.1 glutathione S-transferase A2 1922 rs6577 GSTA2 2939 6 52723374 NM_000846 NP_000837 A/C E210A minus 3671245 1303 SEQUENOM CEPH CEPH (92) 92 0.08 120 "by doubleHit,submitter,freq,cluster" 6p12.1 glutathione S-transferase A2 1923 rs6647 SERPINA1 5265 14 93917168 NM_000295 NP_000286 C/T V237A minus 20192 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 1924 rs6647 SERPINA1 5265 14 93917168 NM_000295 NP_000286 C/T V237A minus 1875346 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 1925 rs6647 SERPINA1 5265 14 93917168 NM_000295 NP_000286 C/T V237A minus 23648078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 1926 rs6647 SERPINA1 5265 14 93917168 NM_000295 NP_000286 C/T V237A minus 23648078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 1927 rs6647 SERPINA1 5265 14 93917168 NM_000295 NP_000286 C/T V237A minus 23648078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 1928 rs6753 NOL5A 10528 20 2586579 NM_006392 NP_006383 C/T M475T plus 3208481 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.24 108 "by cluster,freq" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 1929 rs6791 STXBP2 6813 19 7618277 NM_006949 NP_008880 A/G I526V plus 8516 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 syntaxin binding protein 2 1930 rs6791 STXBP2 6813 19 7618277 NM_006949 NP_008880 A/G I526V plus 1414714 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 syntaxin binding protein 2 1931 rs6791 STXBP2 6813 19 7618277 NM_006949 NP_008880 A/G I526V plus 24417641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 syntaxin binding protein 2 1932 rs6791 STXBP2 6813 19 7618277 NM_006949 NP_008880 A/G I526V plus 24417641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 syntaxin binding protein 2 1933 rs6791 STXBP2 6813 19 7618277 NM_006949 NP_008880 A/G I526V plus 24417641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 syntaxin binding protein 2 1934 rs6794 EXOSC7 23016 3 45027779 NM_015004 NP_055819 C/G V274L plus 8519 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.5 120 "HapMap,doubleHit,freq,cluster" 3p21.32 exosome component 7 1935 rs6794 EXOSC7 23016 3 45027779 NM_015004 NP_055819 C/G V274L plus 3218463 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.12 120 "HapMap,doubleHit,freq,cluster" 3p21.32 exosome component 7 1936 rs6794 EXOSC7 23016 3 45027779 NM_015004 NP_055819 C/G V274L plus 10058733 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,freq,cluster" 3p21.32 exosome component 7 1937 rs6794 EXOSC7 23016 3 45027779 NM_015004 NP_055819 C/G V274L plus 10058733 1303 SEQUENOM CEPH CEPH (92) 46 0.5 120 "HapMap,doubleHit,freq,cluster" 3p21.32 exosome component 7 1938 rs6834 KARS 3735 16 74219304 NM_005548 NP_005539 C/G T595S minus 8568 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.33 120 "HapMap,doubleHit,freq,cluster" 16q23-q24 lysyl-tRNA synthetase 1939 rs6834 KARS 3735 16 74219304 NM_005548 NP_005539 C/G T595S minus 8568 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 120 "HapMap,doubleHit,freq,cluster" 16q23-q24 lysyl-tRNA synthetase 1940 rs6834 KARS 3735 16 74219304 NM_005548 NP_005539 C/G T595S minus 8568 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 "HapMap,doubleHit,freq,cluster" 16q23-q24 lysyl-tRNA synthetase 1941 rs6834 KARS 3735 16 74219304 NM_005548 NP_005539 C/G T595S minus 12357600 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,doubleHit,freq,cluster" 16q23-q24 lysyl-tRNA synthetase 1942 rs6834 KARS 3735 16 74219304 NM_005548 NP_005539 C/G T595S minus 12357600 1303 SEQUENOM CEPH CEPH (92) 92 0.01 120 "HapMap,doubleHit,freq,cluster" 16q23-q24 lysyl-tRNA synthetase 1943 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 8650 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.28 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1944 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 3253817 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.24 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1945 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 3349913 638 TSC-CSHL TSC_42_AA TSC African American (42) 60 0.33 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1946 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 3349913 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 60 0.33 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1947 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 3349913 640 TSC-CSHL TSC_42_A TSC Asian (42) 60 0.27 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1948 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 3349913 1303 SEQUENOM CEPH CEPH (92) 93 0.28 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1949 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 24294922 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1950 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 24294922 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1951 rs6901 PITRM1 10531 10 3170227 NM_014889 NP_055704 A/G Q1037R minus 24294922 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 1952 rs6940 IFI16 3428 1 155837741 NM_005531 NP_005522 A/T T723S plus 3127046 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 1953 rs6952 TRAPPC5 126003 19 7653293 XM_058961 XP_058961 A/C S154A minus 3249580 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 "by doubleHit,freq,cluster" 19p13.3 trafficking protein particle complex 5 1954 rs6962 SDHA 6389 5 309509 NM_004168 NP_004159 A/G V657I plus 14640981 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 120 "HapMap,doubleHit,freq,cluster" 5p15 "succinate dehydrogenase complex, subunit A, flavoprotein (Fp)" 1955 rs6962 SDHA 6389 5 309509 NM_004168 NP_004159 A/G V657I plus 14640981 1303 SEQUENOM CEPH CEPH (92) 92 0.03 120 "HapMap,doubleHit,freq,cluster" 5p15 "succinate dehydrogenase complex, subunit A, flavoprotein (Fp)" 1956 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 8732 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1957 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 100 0.18 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1958 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 84 0.07 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1959 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 122 0.3 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1960 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.16 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1961 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.41 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1962 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 2893542 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1963 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 3172724 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.17 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1964 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 7986213 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.2 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1965 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 7986213 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1966 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 7986213 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1967 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 7986213 777 SNP500CANCER HISP1 Hispanic (23) 42 0.24 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1968 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 7986213 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1969 rs6971 BZRP 706 22 41883424 NM_000714 NP_000705 C/T T147A minus 12704281 693 EGP_SNPS PDR90 NIHPDR 170 0.19 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1970 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 8732 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1971 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 100 0.18 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1972 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 84 0.07 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1973 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 122 0.3 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1974 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.16 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1975 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.41 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1976 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 2893542 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1977 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 3172724 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.17 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1978 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 7986213 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.2 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1979 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 7986213 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1980 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 7986213 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1981 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 7986213 777 SNP500CANCER HISP1 Hispanic (23) 42 0.24 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1982 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 7986213 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1983 rs6971 BZRP 706 22 41883424 NM_007311 NP_009295 C/T H53R minus 12704281 693 EGP_SNPS PDR90 NIHPDR 170 0.19 121 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1984 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 8733 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1985 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 86784 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 98 0.11 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1986 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 86784 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 84 0.2 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1987 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 86784 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 130 0.02 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1988 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 3176163 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.03 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1989 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 5169438 1303 SEQUENOM CEPH CEPH (92) 92 0.33 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1990 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 7986212 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.19 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1991 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 7986212 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1992 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 7986212 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1993 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 7986212 777 SNP500CANCER HISP1 Hispanic (23) 44 0.16 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1994 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 7986212 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.27 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1995 rs6972 BZRP 706 22 41883470 NM_000714 NP_000705 A/G R162H plus 12704282 693 EGP_SNPS PDR90 NIHPDR 170 0.24 120 "by doubleHit,freq,cluster" 22q13.31 benzodiazapine receptor (peripheral) 1996 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 8771 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 1997 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 4331540 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 1998 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 4331540 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 1999 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 23499036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 2000 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 23499036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 2001 rs7006 DPCD 25911 10 103358644 NM_015448 NP_056263 A/G L156S minus 23499036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24.32 deleted in a mouse model of primary ciliary dyskinesia 2002 rs7007 MRPL9 65005 1 148548649 NM_031420 NP_113608 A/G E67G minus 8772 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 120 "by doubleHit,freq,cluster" 1q21 mitochondrial ribosomal protein L9 2003 rs7007 MRPL9 65005 1 148548649 NM_031420 NP_113608 A/G E67G minus 11355653 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 "by doubleHit,freq,cluster" 1q21 mitochondrial ribosomal protein L9 2004 rs7011 CINP 51550 14 101884795 NM_032630 NP_116019 C/T R164H plus 8778 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.29 123 "by doubleHit,freq" 14q32.33 cyclin-dependent kinase 2-interacting protein 2005 rs7011 CINP 51550 14 101884795 NM_032630 NP_116019 C/T R164H plus 16240284 1303 SEQUENOM CEPH CEPH (92) 91 0.28 123 "by doubleHit,freq" 14q32.33 cyclin-dependent kinase 2-interacting protein 2006 rs7011 CINP 51550 14 101884795 NM_032630 NP_116019 C/T R164H plus 24576038 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by doubleHit,freq" 14q32.33 cyclin-dependent kinase 2-interacting protein 2007 rs7011 CINP 51550 14 101884795 NM_032630 NP_116019 C/T R164H plus 24576038 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 14q32.33 cyclin-dependent kinase 2-interacting protein 2008 rs7011 CINP 51550 14 101884795 NM_032630 NP_116019 C/T R164H plus 24576038 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq" 14q32.33 cyclin-dependent kinase 2-interacting protein 2009 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.38 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2010 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.42 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2011 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2012 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2013 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2014 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 6903804 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2015 rs7041 GC 2638 4 72983369 NM_000583 NP_000574 G/T D432E minus 12587289 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.41 121 "by doubleHit,submitter,freq,cluster" 4q12-q13 group-specific component (vitamin D binding protein) 2016 rs7050 WBSCR20B 155400 7 74690345 NM_145645 NP_663620 A/G T117I minus 89142 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 7q11.23 Williams-Beuren Syndrome critical region protein 20 copy B 2017 rs7127 WAC 51322 10 28945142 NM_016628 NP_057712 A/T T531S minus 8920 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 10p12.1 WW domain containing adaptor with coiled-coil 2018 rs7127 WAC 51322 10 28945142 NM_100264 NP_567822 A/T T486S minus 8920 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 10p12.1 WW domain containing adaptor with coiled-coil 2019 rs7127 WAC 51322 10 28945142 NM_100486 NP_567823 A/T T428S minus 8920 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 10p12.1 WW domain containing adaptor with coiled-coil 2020 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 8964 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2021 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 1522972 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.05 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2022 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 1522972 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.36 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2023 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 1522972 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2024 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 2646112 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2025 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 24241649 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2026 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 24241649 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2027 rs7163 EBNA1BP2 10969 1 43301629 NM_006824 NP_006815 A/G R223H minus 24241649 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by doubleHit,freq" 1p35-p33 EBNA1 binding protein 2 2028 rs7185 FARSLB 10056 2 223262112 NM_005687 NP_005678 C/T V585I plus 4955031 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.02 123 "by doubleHit,submitter,freq,cluster" 2q36.1-q36.2 "phenylalanine-tRNA synthetase-like, beta subunit" 2029 rs7185 FARSLB 10056 2 223262112 NM_005687 NP_005678 C/T V585I plus 14504693 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,submitter,freq,cluster" 2q36.1-q36.2 "phenylalanine-tRNA synthetase-like, beta subunit" 2030 rs7185 FARSLB 10056 2 223262112 NM_005687 NP_005678 C/T V585I plus 23326076 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 2q36.1-q36.2 "phenylalanine-tRNA synthetase-like, beta subunit" 2031 rs7185 FARSLB 10056 2 223262112 NM_005687 NP_005678 C/T V585I plus 23326076 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 2q36.1-q36.2 "phenylalanine-tRNA synthetase-like, beta subunit" 2032 rs7185 FARSLB 10056 2 223262112 NM_005687 NP_005678 C/T V585I plus 23326076 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 2q36.1-q36.2 "phenylalanine-tRNA synthetase-like, beta subunit" 2033 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 9003 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2034 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 3195187 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.36 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2035 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 23716035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2036 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 23716035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2037 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 23716035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2038 rs7192 HLA-DRA 3122 6 32519624 NM_019111 NP_061984 G/T L242V plus 24796292 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2039 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 9003 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2040 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 3195187 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.36 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2041 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 23716035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2042 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 23716035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2043 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 23716035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2044 rs7192 HLA-DRA 3122 6 32519625 NM_019111 NP_061984 G/T L242V plus 24796292 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DR alpha" 2045 rs7251 IRF3 3661 19 54854721 NM_001571 NP_001562 C/G S427T minus 9071 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.31 123 "by doubleHit,freq,cluster" 19q13.3-q13.4 interferon regulatory factor 3 2046 rs7251 IRF3 3661 19 54854721 NM_001571 NP_001562 C/G S427T minus 1321615 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 19q13.3-q13.4 interferon regulatory factor 3 2047 rs7251 IRF3 3661 19 54854721 NM_001571 NP_001562 C/G S427T minus 3177824 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.42 123 "by doubleHit,freq,cluster" 19q13.3-q13.4 interferon regulatory factor 3 2048 rs7313 CPVL 54504 7 28843449 NM_019029 NP_061902 C/T A435V minus 1470842 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2049 rs7313 CPVL 54504 7 28843449 NM_019029 NP_061902 C/T A435V minus 1470842 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2050 rs7313 CPVL 54504 7 28843449 NM_019029 NP_061902 C/T A435V minus 24489722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2051 rs7313 CPVL 54504 7 28843449 NM_019029 NP_061902 C/T A435V minus 24489722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2052 rs7313 CPVL 54504 7 28843449 NM_019029 NP_061902 C/T A435V minus 24489722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2053 rs7313 CPVL 54504 7 28843449 NM_031311 NP_112601 C/T A435V minus 1470842 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2054 rs7313 CPVL 54504 7 28843449 NM_031311 NP_112601 C/T A435V minus 1470842 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2055 rs7313 CPVL 54504 7 28843449 NM_031311 NP_112601 C/T A435V minus 24489722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2056 rs7313 CPVL 54504 7 28843449 NM_031311 NP_112601 C/T A435V minus 24489722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2057 rs7313 CPVL 54504 7 28843449 NM_031311 NP_112601 C/T A435V minus 24489722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15-p14 "carboxypeptidase, vitellogenic-like" 2058 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 870165 563 DEBNICK MDECODE-1 European-Americans 48 0.19 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2059 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 870165 564 DEBNICK MDECODE-2 Finnish 48 0.04 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2060 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 870165 565 DEBNICK MDECODE-3 African-American 48 0.04 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2061 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 870165 566 DEBNICK MDECODE-4 Mayan Amerindians from Mexico 48 1 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2062 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 12568612 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1782 0.09 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2063 rs7412 APOE 348 19 50103919 NM_000041 NP_000032 C/T R176C plus 15840556 1303 SEQUENOM CEPH CEPH (92) 92 0.28 120 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 2064 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 9353 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2065 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 2378699 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2066 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 3172582 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 68 0.41 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2067 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 6903821 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.43 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2068 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 6903821 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.34 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2069 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 6903821 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2070 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 6903821 777 SNP500CANCER HISP1 Hispanic (23) 44 0.36 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2071 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 6903821 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2072 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 23868204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2073 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 23868204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2074 rs7483 GSTM3 2947 1 109991743 NM_000849 NP_000840 A/G V224I minus 23868204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1p13.3 glutathione S-transferase M3 (brain) 2075 rs7535 SRP14 6727 15 38115867 NM_003134 NP_003125 C/G P124A minus 3177688 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.23 121 "HapMap,doubleHit,freq,cluster" 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 2076 rs7535 SRP14 6727 15 38115867 NM_003134 NP_003125 C/G P124A minus 3254847 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.28 121 "HapMap,doubleHit,freq,cluster" 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 2077 rs7535 SRP14 6727 15 38115867 NM_003134 NP_003125 C/G P124A minus 4092989 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 121 "HapMap,doubleHit,freq,cluster" 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 2078 rs7535 SRP14 6727 15 38115867 NM_003134 NP_003125 C/G P124A minus 4092989 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,doubleHit,freq,cluster" 15q22 signal recognition particle 14kDa (homologous Alu RNA binding protein) 2079 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 901 AFFY AfAm 12 0.08 123 "by submitter,freq" 1q22 YY1 associated protein 2080 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 902 AFFY Caucasian 24 1 123 "by submitter,freq" 1q22 YY1 associated protein 2081 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 903 AFFY Asian 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2082 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 904 AFFY CEPH 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2083 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 905 AFFY PDpanel 42 0.05 123 "by submitter,freq" 1q22 YY1 associated protein 2084 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 1515501 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq" 1q22 YY1 associated protein 2085 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 24239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 1q22 YY1 associated protein 2086 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 24239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 1q22 YY1 associated protein 2087 rs7539 YAP 55249 1 152442556 NM_018253 NP_060723 C/G E729Q minus 24239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1q22 YY1 associated protein 2088 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 901 AFFY AfAm 12 0.08 123 "by submitter,freq" 1q22 YY1 associated protein 2089 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 902 AFFY Caucasian 24 1 123 "by submitter,freq" 1q22 YY1 associated protein 2090 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 903 AFFY Asian 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2091 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 904 AFFY CEPH 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2092 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 905 AFFY PDpanel 42 0.05 123 "by submitter,freq" 1q22 YY1 associated protein 2093 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 1515501 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq" 1q22 YY1 associated protein 2094 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 24239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 1q22 YY1 associated protein 2095 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 24239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 1q22 YY1 associated protein 2096 rs7539 YAP 55249 1 152442556 NM_139118 NP_620829 C/G E786Q minus 24239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1q22 YY1 associated protein 2097 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 901 AFFY AfAm 12 0.08 123 "by submitter,freq" 1q22 YY1 associated protein 2098 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 902 AFFY Caucasian 24 1 123 "by submitter,freq" 1q22 YY1 associated protein 2099 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 903 AFFY Asian 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2100 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 904 AFFY CEPH 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2101 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 905 AFFY PDpanel 42 0.05 123 "by submitter,freq" 1q22 YY1 associated protein 2102 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 1515501 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq" 1q22 YY1 associated protein 2103 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 24239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 1q22 YY1 associated protein 2104 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 24239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 1q22 YY1 associated protein 2105 rs7539 YAP 55249 1 152442556 NM_139119 NP_620830 C/G E740Q minus 24239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1q22 YY1 associated protein 2106 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 901 AFFY AfAm 12 0.08 123 "by submitter,freq" 1q22 YY1 associated protein 2107 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 902 AFFY Caucasian 24 1 123 "by submitter,freq" 1q22 YY1 associated protein 2108 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 903 AFFY Asian 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2109 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 904 AFFY CEPH 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2110 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 905 AFFY PDpanel 42 0.05 123 "by submitter,freq" 1q22 YY1 associated protein 2111 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 1515501 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq" 1q22 YY1 associated protein 2112 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 24239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 1q22 YY1 associated protein 2113 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 24239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 1q22 YY1 associated protein 2114 rs7539 YAP 55249 1 152442556 NM_139120 NP_620831 C/G E457Q minus 24239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1q22 YY1 associated protein 2115 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 901 AFFY AfAm 12 0.08 123 "by submitter,freq" 1q22 YY1 associated protein 2116 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 902 AFFY Caucasian 24 1 123 "by submitter,freq" 1q22 YY1 associated protein 2117 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 903 AFFY Asian 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2118 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 904 AFFY CEPH 12 1 123 "by submitter,freq" 1q22 YY1 associated protein 2119 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 905 AFFY PDpanel 42 0.05 123 "by submitter,freq" 1q22 YY1 associated protein 2120 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 1515501 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by submitter,freq" 1q22 YY1 associated protein 2121 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 24239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 1q22 YY1 associated protein 2122 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 24239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 1q22 YY1 associated protein 2123 rs7539 YAP 55249 1 152442556 NM_139121 NP_620832 C/G E674Q minus 24239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1q22 YY1 associated protein 2124 rs7540 SPATA11 84266 19 6325890 NM_032306 NP_115682 A/G R191Q plus 1548307 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 by freq 19p13.3 spermatogenesis associated 11 2125 rs7571 ADPRTL1 143 13 23898617 NM_006437 NP_006428 C/G A1656P minus 6903629 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.49 119 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2126 rs7571 ADPRTL1 143 13 23898617 NM_006437 NP_006428 C/G A1656P minus 6903629 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.48 119 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2127 rs7571 ADPRTL1 143 13 23898617 NM_006437 NP_006428 C/G A1656P minus 6903629 776 SNP500CANCER AFR1 African / African-American (24) 48 0.4 119 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2128 rs7571 ADPRTL1 143 13 23898617 NM_006437 NP_006428 C/G A1656P minus 6903629 777 SNP500CANCER HISP1 Hispanic (23) 46 0.39 119 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2129 rs7571 ADPRTL1 143 13 23898617 NM_006437 NP_006428 C/G A1656P minus 6903629 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 119 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2130 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 9463 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2131 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 12531109 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2132 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 12531109 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2133 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 23788580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2134 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 23788580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2135 rs7575 MRPL40 64976 22 17797804 NM_003776 NP_003767 A/G R129H plus 23788580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.21 mitochondrial ribosomal protein L40 2136 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 9695 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.1 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2137 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 9695 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2138 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 9695 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2139 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 23684639 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2140 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 23684639 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2141 rs7775 FRZB 2487 2 183525090 NM_001463 NP_001454 C/G R324G minus 23684639 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 2qter frizzled-related protein 2142 rs7799 ELF1 1997 13 40431052 NM_172373 NP_758961 A/G N58S minus 9720 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 2143 rs7799 ELF1 1997 13 40431052 NM_172373 NP_758961 A/G N58S minus 2934168 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 2144 rs7813 GEMIN4 50628 17 594936 NM_015721 NP_056536 C/T R1033C minus 9735 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 2145 rs7813 GEMIN4 50628 17 594936 NM_015721 NP_056536 C/T R1033C minus 1345110 1303 SEQUENOM CEPH CEPH (92) 92 0.39 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 2146 rs7813 GEMIN4 50628 17 594936 NM_015721 NP_056536 C/T R1033C minus 4930747 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.35 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 2147 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 9747 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.4 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2148 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 2620723 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2149 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 4940070 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.22 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2150 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 16333801 901 AFFY AfAm 10 0.4 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2151 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 16333801 902 AFFY Caucasian 24 0.42 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2152 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 16333801 903 AFFY Asian 12 0.17 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2153 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 16333801 904 AFFY CEPH 12 0.08 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2154 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 16333801 905 AFFY PDpanel 23 0.5 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2155 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 24266714 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2156 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 24266714 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2157 rs7825 OVGP1 5016 1 111669139 NM_002557 NP_002548 C/G E676Q plus 24266714 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2158 rs7887 BAT8 10919 6 31972526 NM_006709 NP_006700 A/C T55N minus 9821 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2159 rs7887 BAT8 10919 6 31972526 NM_006709 NP_006700 A/C T55N minus 4027163 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2160 rs7887 BAT8 10919 6 31972526 NM_006709 NP_006700 A/C T55N minus 24789872 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2161 rs7887 BAT8 10919 6 31972526 NM_006709 NP_006700 A/C T55N minus 24796281 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2162 rs7887 BAT8 10919 6 31972526 NM_025256 NP_079532 A/C T55N minus 9821 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2163 rs7887 BAT8 10919 6 31972526 NM_025256 NP_079532 A/C T55N minus 4027163 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2164 rs7887 BAT8 10919 6 31972526 NM_025256 NP_079532 A/C T55N minus 24789872 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2165 rs7887 BAT8 10919 6 31972526 NM_025256 NP_079532 A/C T55N minus 24796281 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 6p21.31 HLA-B associated transcript 8 2166 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 9884 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2167 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 901 AFFY AfAm 40 0.43 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2168 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 902 AFFY Caucasian 40 0.38 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2169 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 903 AFFY Asian 40 0.15 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2170 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 904 AFFY CEPH 56 0.2 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2171 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 905 AFFY PDpanel 48 0.42 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2172 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 2803970 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2173 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 23643161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2174 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 23643161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2175 rs7946 PEMT 10400 17 17350285 NM_007169 NP_009100 C/T V175M plus 23643161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.1 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2176 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 9884 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2177 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 901 AFFY AfAm 40 0.43 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2178 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 902 AFFY Caucasian 40 0.38 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2179 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 903 AFFY Asian 40 0.15 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2180 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 904 AFFY CEPH 56 0.2 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2181 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 905 AFFY PDpanel 48 0.42 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2182 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 2803970 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2183 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 23643161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2184 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 23643161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2185 rs7946 PEMT 10400 17 17350285 NM_148172 NP_680477 C/T V212M plus 23643161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.1 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2186 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 9884 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2187 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 901 AFFY AfAm 40 0.43 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2188 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 902 AFFY Caucasian 40 0.38 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2189 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 903 AFFY Asian 40 0.15 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2190 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 904 AFFY CEPH 56 0.2 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2191 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 905 AFFY PDpanel 48 0.42 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2192 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 2803970 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2193 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 23643161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2194 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 23643161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2195 rs7946 PEMT 10400 17 17350285 NM_148173 NP_680478 C/T V175M plus 23643161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.1 123 "by doubleHit,freq,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 2196 rs8012 GCDH 2639 19 12871520 NM_013976 NP_039663 A/G Q417R plus 9953 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 121 "by doubleHit,freq,cluster" 19p13.2 glutaryl-Coenzyme A dehydrogenase 2197 rs8012 GCDH 2639 19 12871520 NM_013976 NP_039663 A/G Q417R plus 17615281 1303 SEQUENOM CEPH CEPH (92) 92 0.26 121 "by doubleHit,freq,cluster" 19p13.2 glutaryl-Coenzyme A dehydrogenase 2198 rs8017 TCEB2 6923 16 2761574 NM_207013 NP_996896 C/T S129N plus 3287771 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,freq,cluster" 16p12.3 "transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)" 2199 rs8144 ITLN1 55600 1 157659531 NM_017625 NP_060095 C/G R313P plus 16240520 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 by freq 1q21.3 intelectin 1 (galactofuranose binding) 2200 rs8147 DNAJB11 51726 3 187784405 NM_016306 NP_057390 A/G I264V plus 10096 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 120 "HapMap,submitter,freq" 3q28 "DnaJ (Hsp40) homolog, subfamily B, member 11" 2201 rs8147 DNAJB11 51726 3 187784405 NM_016306 NP_057390 A/G I264V plus 1529418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 120 "HapMap,submitter,freq" 3q28 "DnaJ (Hsp40) homolog, subfamily B, member 11" 2202 rs8147 DNAJB11 51726 3 187784405 NM_016306 NP_057390 A/G I264V plus 1529418 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "HapMap,submitter,freq" 3q28 "DnaJ (Hsp40) homolog, subfamily B, member 11" 2203 rs8207 PPIG 9360 2 170319370 NM_004792 NP_004783 A/G N699D plus 10166 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 121 "HapMap,doubleHit,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 2204 rs8207 PPIG 9360 2 170319370 NM_004792 NP_004783 A/G N699D plus 10007638 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 121 "HapMap,doubleHit,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 2205 rs8207 PPIG 9360 2 170319370 NM_004792 NP_004783 A/G N699D plus 10007638 1303 SEQUENOM CEPH CEPH (92) 92 0.2 121 "HapMap,doubleHit,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 2206 rs8286 ACHE 43 7 100135507 NM_000665 NP_000656 A/T V333E minus 10259 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 by freq 7q22 acetylcholinesterase (YT blood group) 2207 rs8286 ACHE 43 7 100135507 NM_015831 NP_056646 A/T V333E minus 10259 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 by freq 7q22 acetylcholinesterase (YT blood group) 2208 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 10262 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.43 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2209 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 3234695 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2210 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 3747046 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2211 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 24082489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2212 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 24082489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2213 rs8289 M6PRBP1 10226 19 4810937 NM_005817 NP_005808 A/G I56V minus 24082489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 2214 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 4480077 506 NCBI NIHPDR NIHPDR 122 0.26 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2215 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 4916789 693 EGP_SNPS PDR90 NIHPDR 178 0.24 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2216 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 4916789 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2217 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 4916789 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2218 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 24531273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2219 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 24531273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2220 rs8305 POLI 11201 18 50074803 NM_007195 NP_009126 A/G A706T plus 24531273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 18q21.1 polymerase (DNA directed) iota 2221 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 10314 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.28 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2222 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 24341481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2223 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 24341481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.11 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2224 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 24341481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2225 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 24790044 1303 SEQUENOM CEPH CEPH (92) 184 0.28 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2226 rs8337 UBD 10537 6 29631655 NM_006398 NP_006389 C/G C160S minus 24796241 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 2227 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 10317 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.14 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2228 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 4919320 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.19 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2229 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 19599933 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2230 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 24166651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2231 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 24166651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2232 rs8340 NRPS998 132949 4 57045705 NM_181806 NP_861522 G/T Y1030D minus 24166651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 2233 rs8451 WINS1 55180 15 98927200 NM_018148 NP_060618 G/T R680S minus 10781777 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2234 rs8451 WINS1 55180 15 98927200 NM_018148 NP_060618 G/T R680S minus 24595382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.47 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2235 rs8451 WINS1 55180 15 98927200 NM_018148 NP_060618 G/T R680S minus 24595382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2236 rs8451 WINS1 55180 15 98927200 NM_018148 NP_060618 G/T R680S minus 24595382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2237 rs8455 LXN 56925 3 159871482 NM_020169 NP_064554 C/T H53R plus 14195380 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 by freq 3q25.32 latexin 2238 rs8455 LXN 56925 3 159871482 NM_020169 NP_064554 C/T H53R plus 24381862 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 3q25.32 latexin 2239 rs8455 LXN 56925 3 159871482 NM_020169 NP_064554 C/T H53R plus 24381862 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 3q25.32 latexin 2240 rs8455 LXN 56925 3 159871482 NM_020169 NP_064554 C/T H53R plus 24381862 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 3q25.32 latexin 2241 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 10462 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2242 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 2985138 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2243 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 10624698 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2244 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 10624698 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2245 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 23643988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2246 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 23643988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2247 rs8473 MKI67 4288 10 129789568 NM_002417 NP_002408 A/G K3217E minus 23643988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2248 rs8480 MRPL9 65005 1 148546408 NM_031420 NP_113608 A/C E210A minus 16389867 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,submitter,freq,cluster" 1q21 mitochondrial ribosomal protein L9 2249 rs8500 COQ6 51004 14 73498198 NM_182476 NP_872282 C/T V406M minus 10490 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2250 rs8500 COQ6 51004 14 73498198 NM_182476 NP_872282 C/T V406M minus 2989783 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.28 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2251 rs8500 COQ6 51004 14 73498198 NM_182476 NP_872282 C/T V406M minus 10725291 1303 SEQUENOM CEPH CEPH (92) 92 0.26 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2252 rs8500 COQ6 51004 14 73498198 NM_182480 NP_872286 C/T V331M minus 10490 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2253 rs8500 COQ6 51004 14 73498198 NM_182480 NP_872286 C/T V331M minus 2989783 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.28 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2254 rs8500 COQ6 51004 14 73498198 NM_182480 NP_872286 C/T V331M minus 10725291 1303 SEQUENOM CEPH CEPH (92) 92 0.26 116 "by doubleHit,freq,cluster" 14q24.2 coenzyme Q6 homolog (yeast) 2255 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.44 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2256 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.2 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2257 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.16 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2258 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2259 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2260 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2261 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.21 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2262 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 1487347 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2263 rs8572 OXA1L 5018 14 22306364 NM_005015 NP_005006 A/G A104V minus 3173367 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.1 121 "by doubleHit,freq,cluster" 14q11.2 oxidase (cytochrome c) assembly 1-like 2264 rs8821 FLII 2314 17 18089259 NM_002018 NP_002009 A/G R1243H minus 10850 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 by freq 17p11.2 flightless I homolog (Drosophila) 2265 rs8875 NDUFC2 4718 11 77468303 NM_004549 NP_004540 C/G L46V plus 793572 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 by freq 11q13.4 "NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa" 2266 rs8923 MTHFS 10588 15 77924615 NM_006441 NP_006432 A/G T202A minus 10798867 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 15q24.3 "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" 2267 rs8923 MTHFS 10588 15 77924615 NM_006441 NP_006432 A/G T202A minus 10798867 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 15q24.3 "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" 2268 rs8923 MTHFS 10588 15 77924615 NM_006441 NP_006432 A/G T202A minus 24521262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 15q24.3 "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" 2269 rs8923 MTHFS 10588 15 77924615 NM_006441 NP_006432 A/G T202A minus 24521262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q24.3 "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" 2270 rs8923 MTHFS 10588 15 77924615 NM_006441 NP_006432 A/G T202A minus 24521262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q24.3 "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" 2271 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 10979 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.22 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2272 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 17926461 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.21 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2273 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 17926461 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2274 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 24464782 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2275 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 24464782 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2276 rs8940 CAV2 858 7 115740025 NM_001233 NP_001224 C/G Q130E plus 24464782 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2277 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 10979 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.22 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2278 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 17926461 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.21 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2279 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 17926461 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2280 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 24464782 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2281 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 24464782 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2282 rs8940 CAV2 858 7 115740025 NM_198212 NP_937855 C/G A67G plus 24464782 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 7q31.1 caveolin 2 2283 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 11013 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.18 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2284 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 3224350 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.13 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2285 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 24546261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2286 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 24546261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.08 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2287 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 24546261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2288 rs8971 GART 2618 21 33805488 NM_000819 NP_000810 A/G D752G minus 24796624 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 "by cluster,freq" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 2289 rs8999 TTF1 7270 9 132306895 NM_007344 NP_031370 G/T A290S minus 11043 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,freq,cluster" 9q34.3 "transcription termination factor, RNA polymerase I" 2290 rs8999 TTF1 7270 9 132306895 NM_007344 NP_031370 G/T A290S minus 11043 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 "HapMap,freq,cluster" 9q34.3 "transcription termination factor, RNA polymerase I" 2291 rs8999 TTF1 7270 9 132306895 NM_007344 NP_031370 G/T A290S minus 4925916 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 120 "HapMap,freq,cluster" 9q34.3 "transcription termination factor, RNA polymerase I" 2292 rs9001 CHDH 55349 3 53832957 NM_018397 NP_060867 A/C E40A minus 3213480 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.44 123 "HapMap,doubleHit,freq,cluster" 3p21.1 choline dehydrogenase 2293 rs9001 CHDH 55349 3 53832957 NM_018397 NP_060867 A/C E40A minus 11581375 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.03 123 "HapMap,doubleHit,freq,cluster" 3p21.1 choline dehydrogenase 2294 rs9001 CHDH 55349 3 53832957 NM_018397 NP_060867 A/C E40A minus 11581375 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "HapMap,doubleHit,freq,cluster" 3p21.1 choline dehydrogenase 2295 rs9002 GPR125 166647 4 22066436 XM_291111 XP_291111 A/G V1043M minus 6469754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,freq" 4p15.32-p15.31 G protein-coupled receptor 125 2296 rs9002 GPR125 166647 4 22066436 XM_291111 XP_291111 A/G V1043M minus 6469754 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "HapMap,doubleHit,freq" 4p15.32-p15.31 G protein-coupled receptor 125 2297 rs9013 KYNU 8942 2 143631921 NM_003937 NP_003928 C/T K412E minus 3251684 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.3 108 "by cluster,freq" 2q22.3 kynureninase (L-kynurenine hydrolase) 2298 rs9016 GC 2638 4 72983331 NM_000583 NP_000574 A/G H445R minus 6903806 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 121 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 2299 rs9016 GC 2638 4 72983331 NM_000583 NP_000574 A/G H445R minus 6903806 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 121 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 2300 rs9016 GC 2638 4 72983331 NM_000583 NP_000574 A/G H445R minus 6903806 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 121 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 2301 rs9016 GC 2638 4 72983331 NM_000583 NP_000574 A/G H445R minus 6903806 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 2302 rs9016 GC 2638 4 72983331 NM_000583 NP_000574 A/G H445R minus 6903806 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 2303 rs9088 HCA112 55365 7 149939164 NM_018487 NP_060957 A/G T208A plus 11143 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.29 121 "by doubleHit,freq,cluster" 7q36.1 hepatocellular carcinoma-associated antigen 112 2304 rs9088 HCA112 55365 7 149939164 NM_018487 NP_060957 A/G T208A plus 10356725 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "by doubleHit,freq,cluster" 7q36.1 hepatocellular carcinoma-associated antigen 112 2305 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 11320 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2306 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 1517681 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2307 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 1517681 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2308 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 1517681 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2309 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 11824656 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2310 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 11824656 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2311 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 24408636 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2312 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 24408636 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2313 rs9250 SENP6 26054 6 76482008 NM_015571 NP_056386 A/G Y1106C plus 24408636 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 6q13-q14.3 SUMO1/sentrin specific protease 6 2314 rs9257 KRT23 25984 17 36338030 NM_015515 NP_056330 C/T T303A plus 3226071 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.23 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2315 rs9257 KRT23 25984 17 36338030 NM_015515 NP_056330 C/T T303A plus 23595111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2316 rs9257 KRT23 25984 17 36338030 NM_015515 NP_056330 C/T T303A plus 23595111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2317 rs9257 KRT23 25984 17 36338030 NM_015515 NP_056330 C/T T303A plus 23595111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2318 rs9257 KRT23 25984 17 36338030 NM_173213 NP_775320 C/T T90A plus 3226071 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.23 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2319 rs9257 KRT23 25984 17 36338030 NM_173213 NP_775320 C/T T90A plus 23595111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2320 rs9257 KRT23 25984 17 36338030 NM_173213 NP_775320 C/T T90A plus 23595111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2321 rs9257 KRT23 25984 17 36338030 NM_173213 NP_775320 C/T T90A plus 23595111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 23 (histone deacetylase inducible) 2322 rs9260 HLA-DQA2 3118 6 32822069 NM_020056 NP_064440 A/G M230V plus 11330 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.46 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 2" 2323 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 11434 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2324 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 1520218 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2325 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 1520218 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2326 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 1520218 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.18 123 "by cluster,freq" 1q42-q43 exonuclease 1 2327 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 5604877 693 EGP_SNPS PDR90 NIHPDR 176 0.31 123 "by cluster,freq" 1q42-q43 exonuclease 1 2328 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 5604877 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2329 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 24155849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1q42-q43 exonuclease 1 2330 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 24155849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 1q42-q43 exonuclease 1 2331 rs9350 EXO1 9156 1 238374715 NM_003686 NP_003677 C/T P757L plus 24155849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1q42-q43 exonuclease 1 2332 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 11434 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2333 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 1520218 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2334 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 1520218 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2335 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 1520218 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.18 123 "by cluster,freq" 1q42-q43 exonuclease 1 2336 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 5604877 693 EGP_SNPS PDR90 NIHPDR 176 0.31 123 "by cluster,freq" 1q42-q43 exonuclease 1 2337 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 5604877 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2338 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 24155849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1q42-q43 exonuclease 1 2339 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 24155849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 1q42-q43 exonuclease 1 2340 rs9350 EXO1 9156 1 238374715 NM_006027 NP_006018 C/T P757L plus 24155849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1q42-q43 exonuclease 1 2341 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 11434 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2342 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 1520218 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2343 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 1520218 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.23 123 "by cluster,freq" 1q42-q43 exonuclease 1 2344 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 1520218 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.18 123 "by cluster,freq" 1q42-q43 exonuclease 1 2345 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 5604877 693 EGP_SNPS PDR90 NIHPDR 176 0.31 123 "by cluster,freq" 1q42-q43 exonuclease 1 2346 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 5604877 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by cluster,freq" 1q42-q43 exonuclease 1 2347 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 24155849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1q42-q43 exonuclease 1 2348 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 24155849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 1q42-q43 exonuclease 1 2349 rs9350 EXO1 9156 1 238374715 NM_130398 NP_569082 C/T P757L plus 24155849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1q42-q43 exonuclease 1 2350 rs9352 CHAF1A 10036 19 4393336 NM_005483 NP_005474 C/T A905V plus 3177783 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.4 121 "by cluster,freq" 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 2351 rs9354 NOC4 10328 16 84370834 NM_006067 NP_006058 C/T A205V minus 11438 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 by freq 16q24 neighbor of COX4 2352 rs9354 NOC4 10328 16 84370834 NM_006067 NP_006058 C/T A205V minus 11438 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.11 123 by freq 16q24 neighbor of COX4 2353 rs9354 NOC4 10328 16 84370834 NM_006067 NP_006058 C/T A205V minus 11438 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 by freq 16q24 neighbor of COX4 2354 rs9354 NOC4 10328 16 84370834 NM_006067 NP_006058 C/T A205V minus 11438 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 16q24 neighbor of COX4 2355 rs9436 PELP1 27043 17 4521500 NM_014389 NP_055204 A/T T1126S minus 11526 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.27 120 "HapMap,submitter,freq" 17p13.3 "proline-, glutamic acid-, leucine-rich protein 1" 2356 rs9436 PELP1 27043 17 4521500 NM_014389 NP_055204 A/T T1126S minus 11526 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 120 "HapMap,submitter,freq" 17p13.3 "proline-, glutamic acid-, leucine-rich protein 1" 2357 rs9436 PELP1 27043 17 4521500 NM_014389 NP_055204 A/T T1126S minus 11526 1303 SEQUENOM CEPH CEPH (92) 92 0.27 120 "HapMap,submitter,freq" 17p13.3 "proline-, glutamic acid-, leucine-rich protein 1" 2358 rs9438 DHX36 170506 3 155501589 NM_020865 NP_065916 C/G S416C plus 11529 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.41 120 "HapMap,doubleHit,submitter,freq,cluster" 3p13-q23 DEAH (Asp-Glu-Ala-His) box polypeptide 36 2359 rs9438 DHX36 170506 3 155501589 NM_020865 NP_065916 C/G S416C plus 3110895 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 120 "HapMap,doubleHit,submitter,freq,cluster" 3p13-q23 DEAH (Asp-Glu-Ala-His) box polypeptide 36 2360 rs9438 DHX36 170506 3 155501589 NM_020865 NP_065916 C/G S416C plus 3110895 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "HapMap,doubleHit,submitter,freq,cluster" 3p13-q23 DEAH (Asp-Glu-Ala-His) box polypeptide 36 2361 rs9508 ATPIF1 93974 1 28248421 NM_178190 NP_835497 C/T R63G minus 11605 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.23 123 "by doubleHit,submitter,freq" 1p35.3 ATPase inhibitory factor 1 2362 rs9508 ATPIF1 93974 1 28248421 NM_178190 NP_835497 C/T R63G minus 2287204 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,submitter,freq" 1p35.3 ATPase inhibitory factor 1 2363 rs9508 ATPIF1 93974 1 28248421 NM_178190 NP_835497 C/T R63G minus 23668319 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq" 1p35.3 ATPase inhibitory factor 1 2364 rs9508 ATPIF1 93974 1 28248421 NM_178190 NP_835497 C/T R63G minus 23668319 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq" 1p35.3 ATPase inhibitory factor 1 2365 rs9508 ATPIF1 93974 1 28248421 NM_178190 NP_835497 C/T R63G minus 23668319 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq" 1p35.3 ATPase inhibitory factor 1 2366 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 11628 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2367 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 3236347 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2368 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 6502398 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2369 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 6502398 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2370 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 24496672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2371 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 24496672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2372 rs9530 GUSB 2990 7 64870044 NM_000181 NP_000172 C/T L649P minus 24496672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 7q21.11 "glucuronidase, beta" 2373 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 11676 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2374 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 1514018 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.16 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2375 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 1514018 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.33 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2376 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 1514018 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2377 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 3208727 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.32 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2378 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 8351706 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2379 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 24596725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2380 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 24596725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2381 rs9575 NSFL1C 55968 20 1374393 NM_016143 NP_057227 A/G D290N minus 24596725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2382 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 11676 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2383 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 1514018 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.16 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2384 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 1514018 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.33 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2385 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 1514018 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2386 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 3208727 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.32 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2387 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 8351706 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2388 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 24596725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2389 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 24596725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2390 rs9575 NSFL1C 55968 20 1374393 NM_018839 NP_061327 A/G D259N minus 24596725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2391 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 11676 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2392 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 1514018 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.16 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2393 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 1514018 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.33 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2394 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 1514018 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2395 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 3208727 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.32 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2396 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 8351706 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2397 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 24596725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2398 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 24596725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2399 rs9575 NSFL1C 55968 20 1374393 NM_182483 NP_872289 A/G D179N minus 24596725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 20p13 NSFL1 (p97) cofactor (p47) 2400 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 11696 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.4 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2401 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 1302850 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2402 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 1302850 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2403 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 23384325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2404 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 23384325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2405 rs9593 MMAB 326625 12 108457590 NM_052845 NP_443077 A/T M239K minus 23384325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 2406 rs9600 NDUFS3 4722 11 47562560 NM_004551 NP_004542 A/C P249Q plus 11703 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.11 52 by freq 11p11.11 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)" 2407 rs9600 NDUFS3 4722 11 47562560 NM_004551 NP_004542 A/C P249Q plus 11703 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.14 52 by freq 11p11.11 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)" 2408 rs9600 NDUFS3 4722 11 47562560 NM_004551 NP_004542 A/C P249Q plus 11703 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 11p11.11 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)" 2409 rs9600 NDUFS3 4722 11 47562560 NM_004551 NP_004542 A/C P249Q plus 11703 1303 SEQUENOM CEPH CEPH (92) 92 1 52 by freq 11p11.11 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)" 2410 rs9614 FBXO2 26232 1 11644827 NM_012168 NP_036300 A/C K118T minus 1343940 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 by freq 1p36.21 F-box protein 2 2411 rs9820 PABPC4 8761 1 39699971 NM_003819 NP_003810 A/T Y382F minus 11938 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 120 by freq 1p32-p36 "poly(A) binding protein, cytoplasmic 4 (inducible form)" 2412 rs9820 PABPC4 8761 1 39699971 NM_003819 NP_003810 A/T Y382F minus 11938 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 by freq 1p32-p36 "poly(A) binding protein, cytoplasmic 4 (inducible form)" 2413 rs9820 PABPC4 8761 1 39699971 NM_003819 NP_003810 A/T Y382F minus 11938 1303 SEQUENOM CEPH CEPH (92) 92 1 120 by freq 1p32-p36 "poly(A) binding protein, cytoplasmic 4 (inducible form)" 2414 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 6903740 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.35 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2415 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 6903740 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2416 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 6903740 776 SNP500CANCER AFR1 African / African-American (24) 48 0.4 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2417 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 6903740 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2418 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 6903740 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2419 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 12724380 693 EGP_SNPS PDR90 NIHPDR 172 0.4 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2420 rs10012 CYP1B1 1545 2 38214041 NM_000104 NP_000095 C/G R48G minus 12724380 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 2421 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 12205 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.41 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2422 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 12205 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.19 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2423 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 12205 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.46 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2424 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 2640019 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2425 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 4953654 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.43 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2426 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 23860871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2427 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 23860871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2428 rs10067 OVGP1 5016 1 111669353 NM_002557 NP_002548 C/G H604Q plus 23860871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 2429 rs10093 HLA-DQA2 3118 6 32821000 NM_020056 NP_064440 C/G E57Q plus 12233 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 2" 2430 rs10093 HLA-DQA2 3118 6 32821000 NM_020056 NP_064440 C/G E57Q plus 12233 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 2" 2431 rs10093 HLA-DQA2 3118 6 32821000 NM_020056 NP_064440 C/G E57Q plus 12233 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 2" 2432 rs10093 HLA-DQA2 3118 6 32821000 NM_020056 NP_064440 C/G E57Q plus 12233 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.49 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 2" 2433 rs10242 RPP38 10557 10 15185954 NM_006414 NP_006405 C/T I212T plus 12391 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2434 rs10242 RPP38 10557 10 15185954 NM_006414 NP_006405 C/T I212T plus 12391 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.09 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2435 rs10242 RPP38 10557 10 15185954 NM_006414 NP_006405 C/T I212T plus 12391 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.04 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2436 rs10242 RPP38 10557 10 15185954 NM_006414 NP_006405 C/T I212T plus 12391 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2437 rs10242 RPP38 10557 10 15185954 NM_183005 NP_892117 C/T I212T plus 12391 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2438 rs10242 RPP38 10557 10 15185954 NM_183005 NP_892117 C/T I212T plus 12391 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.09 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2439 rs10242 RPP38 10557 10 15185954 NM_183005 NP_892117 C/T I212T plus 12391 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.04 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2440 rs10242 RPP38 10557 10 15185954 NM_183005 NP_892117 C/T I212T plus 12391 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 10p13 ribonuclease P/MRP 38kDa subunit 2441 rs10243 KIF21A 55605 12 37981609 NM_017641 NP_060111 A/G G1611D minus 1517543 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 120 by freq 12q12 kinesin family member 21A 2442 rs10243 KIF21A 55605 12 37981609 NM_017641 NP_060111 A/G G1611D minus 1517543 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 120 by freq 12q12 kinesin family member 21A 2443 rs10243 KIF21A 55605 12 37981609 NM_017641 NP_060111 A/G G1611D minus 1517543 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 by freq 12q12 kinesin family member 21A 2444 rs10243 KIF21A 55605 12 37981609 NM_017641 NP_060111 A/G G1611D minus 1517543 1303 SEQUENOM CEPH CEPH (92) 92 1 120 by freq 12q12 kinesin family member 21A 2445 rs10330 COPE 11316 19 18878862 NM_007263 NP_009194 C/T T117I minus 12481 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2446 rs10330 COPE 11316 19 18878862 NM_007263 NP_009194 C/T T117I minus 12481 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2447 rs10330 COPE 11316 19 18878862 NM_007263 NP_009194 C/T T117I minus 12481 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2448 rs10330 COPE 11316 19 18878862 NM_199444 NP_955476 C/T T117I minus 12481 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2449 rs10330 COPE 11316 19 18878862 NM_199444 NP_955476 C/T T117I minus 12481 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2450 rs10330 COPE 11316 19 18878862 NM_199444 NP_955476 C/T T117I minus 12481 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 HapMap 19p13.11 "coatomer protein complex, subunit epsilon" 2451 rs10371 CACH-1 134526 5 80667398 NM_130767 NP_570123 C/T A403T plus 12523 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 120 "HapMap,submitter,freq,cluster" 5q14.1 cytosolic acetyl-CoA hydrolase 2452 rs10371 CACH-1 134526 5 80667398 NM_130767 NP_570123 C/T A403T plus 1530425 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,submitter,freq,cluster" 5q14.1 cytosolic acetyl-CoA hydrolase 2453 rs10371 CACH-1 134526 5 80667398 NM_130767 NP_570123 C/T A403T plus 17069119 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,submitter,freq,cluster" 5q14.1 cytosolic acetyl-CoA hydrolase 2454 rs10371 CACH-1 134526 5 80667398 NM_130767 NP_570123 C/T A403T plus 17069119 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "HapMap,submitter,freq,cluster" 5q14.1 cytosolic acetyl-CoA hydrolase 2455 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12532 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2456 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 3228713 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.12 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2457 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12675544 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 0.19 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2458 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12675544 775 SNP500CANCER CAUC1 Caucasian (31) 56 0.18 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2459 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12675544 776 SNP500CANCER AFR1 African / African-American (24) 42 0.19 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2460 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12675544 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2461 rs10380 MTRR 4552 5 7950191 NM_002454 NP_002445 C/T H595Y plus 12675544 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2462 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12532 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2463 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 3228713 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.12 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2464 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12675544 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 0.19 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2465 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12675544 775 SNP500CANCER CAUC1 Caucasian (31) 56 0.18 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2466 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12675544 776 SNP500CANCER AFR1 African / African-American (24) 42 0.19 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2467 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12675544 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2468 rs10380 MTRR 4552 5 7950191 NM_024010 NP_076915 C/T H622Y plus 12675544 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 120 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2469 rs10444 C1D 10438 2 68181719 NM_006333 NP_006324 C/T S127P minus 12601 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 120 by freq 2p13-p12 nuclear DNA-binding protein 2470 rs10444 C1D 10438 2 68181719 NM_006333 NP_006324 C/T S127P minus 6431782 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 by freq 2p13-p12 nuclear DNA-binding protein 2471 rs10444 C1D 10438 2 68181719 NM_173177 NP_775269 C/T S127P minus 12601 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 120 by freq 2p13-p12 nuclear DNA-binding protein 2472 rs10444 C1D 10438 2 68181719 NM_173177 NP_775269 C/T S127P minus 6431782 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 by freq 2p13-p12 nuclear DNA-binding protein 2473 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 12612 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.22 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2474 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 1543659 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.07 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2475 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 1543659 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.29 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2476 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 1543659 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.49 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2477 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 3565255 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2478 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 23905769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2479 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 23905769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2480 rs10455 CYBRD1 79901 2 172236780 NM_024843 NP_079119 A/G S266N plus 23905769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 2q31.1 cytochrome b reductase 1 2481 rs10480 MRPS21 54460 1 147093619 NM_018997 NP_061870 C/T R50C plus 12637 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.07 120 by freq 1q21 mitochondrial ribosomal protein S21 2482 rs10480 MRPS21 54460 1 147093619 NM_018997 NP_061870 C/T R50C plus 12637 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 120 by freq 1q21 mitochondrial ribosomal protein S21 2483 rs10480 MRPS21 54460 1 147093619 NM_018997 NP_061870 C/T R50C plus 12637 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 by freq 1q21 mitochondrial ribosomal protein S21 2484 rs10480 MRPS21 54460 1 147093619 NM_018997 NP_061870 C/T R50C plus 12637 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 by freq 1q21 mitochondrial ribosomal protein S21 2485 rs10480 MRPS21 54460 1 147093619 NM_031901 NP_114107 C/T R50C plus 12637 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.07 120 by freq 1q21 mitochondrial ribosomal protein S21 2486 rs10480 MRPS21 54460 1 147093619 NM_031901 NP_114107 C/T R50C plus 12637 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 120 by freq 1q21 mitochondrial ribosomal protein S21 2487 rs10480 MRPS21 54460 1 147093619 NM_031901 NP_114107 C/T R50C plus 12637 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 by freq 1q21 mitochondrial ribosomal protein S21 2488 rs10480 MRPS21 54460 1 147093619 NM_031901 NP_114107 C/T R50C plus 12637 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 by freq 1q21 mitochondrial ribosomal protein S21 2489 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.27 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2490 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 901 AFFY AfAm 12 0.08 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2491 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 902 AFFY Caucasian 24 0.42 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2492 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 903 AFFY Asian 10 0.2 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2493 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 904 AFFY CEPH 12 0.33 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2494 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 4963580 905 AFFY PDpanel 48 0.29 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2495 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 12824947 1303 SEQUENOM CEPH CEPH (92) 93 0.41 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2496 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 24399052 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2497 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 24399052 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2498 rs10502 UBE2J1 51465 6 90096389 NM_016021 NP_057105 C/G L229V minus 24399052 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 6q16.1 "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)" 2499 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 12745 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.04 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2500 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 12745 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2501 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 12745 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2502 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 12745 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2503 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 12745 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2504 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 24709484 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2505 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 24709484 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2506 rs10583 TM9SF1 10548 14 23732017 NM_006405 NP_006396 A/G R215H minus 24709484 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 14q11.2 transmembrane 9 superfamily member 1 2507 rs10642 EIF5B 9669 2 99438715 NM_015904 NP_056988 A/G S337G plus 12805 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.12 52 by freq 2p11.1-q11.1 eukaryotic translation initiation factor 5B 2508 rs10642 EIF5B 9669 2 99438715 NM_015904 NP_056988 A/G S337G plus 12805 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.03 52 by freq 2p11.1-q11.1 eukaryotic translation initiation factor 5B 2509 rs10642 EIF5B 9669 2 99438715 NM_015904 NP_056988 A/G S337G plus 12805 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 52 by freq 2p11.1-q11.1 eukaryotic translation initiation factor 5B 2510 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 12921 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2511 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 1516909 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.26 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2512 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 1516909 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.46 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2513 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 1516909 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.38 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2514 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 3227327 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.43 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2515 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 3227327 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2516 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 21526673 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2517 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 24683934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2518 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 24683934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2519 rs10755 LGALS14 56891 19 44891754 NM_020129 NP_064514 C/G F127L plus 24683934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2520 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 12921 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2521 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 1516909 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.26 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2522 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 1516909 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.46 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2523 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 1516909 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.38 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2524 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 3227327 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.43 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2525 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 3227327 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2526 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 21526673 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2527 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 24683934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2528 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 24683934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2529 rs10755 LGALS14 56891 19 44891754 NM_203471 NP_982297 C/G F156L plus 24683934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 19q13.2 "lectin, galactoside-binding, soluble, 14" 2530 rs10806 THAP11 57215 16 66434848 NM_020457 NP_065190 G/T R297L plus 12974 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 120 HapMap 16q22.1 THAP domain containing 11 2531 rs10806 THAP11 57215 16 66434848 NM_020457 NP_065190 G/T R297L plus 12974 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 120 HapMap 16q22.1 THAP domain containing 11 2532 rs10806 THAP11 57215 16 66434848 NM_020457 NP_065190 G/T R297L plus 12974 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.18 120 HapMap 16q22.1 THAP domain containing 11 2533 rs10806 THAP11 57215 16 66434848 NM_020457 NP_065190 G/T R297L plus 12974 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 16q22.1 THAP domain containing 11 2534 rs10806 THAP11 57215 16 66434848 NM_020457 NP_065190 G/T R297L plus 12974 1303 SEQUENOM CEPH CEPH (92) 92 1 120 HapMap 16q22.1 THAP domain containing 11 2535 rs10846 PKN1 5585 19 14443468 NM_002741 NP_002732 A/G V901I plus 13018 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.18 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2536 rs10846 PKN1 5585 19 14443468 NM_002741 NP_002732 A/G V901I plus 3177680 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.16 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2537 rs10846 PKN1 5585 19 14443468 NM_002741 NP_002732 A/G V901I plus 4931471 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.15 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2538 rs10846 PKN1 5585 19 14443468 NM_002741 NP_002732 A/G V901I plus 20063928 1303 SEQUENOM CEPH CEPH (92) 92 0.18 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2539 rs10846 PKN1 5585 19 14443468 NM_213560 NP_998725 A/G V907I plus 13018 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.18 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2540 rs10846 PKN1 5585 19 14443468 NM_213560 NP_998725 A/G V907I plus 3177680 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.16 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2541 rs10846 PKN1 5585 19 14443468 NM_213560 NP_998725 A/G V907I plus 4931471 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.15 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2542 rs10846 PKN1 5585 19 14443468 NM_213560 NP_998725 A/G V907I plus 20063928 1303 SEQUENOM CEPH CEPH (92) 92 0.18 120 "by doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 2543 rs10869 SYNGR4 23546 19 53571289 NM_012451 NP_036583 C/T T203A minus 13042 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 120 by freq 19q13.3 synaptogyrin 4 2544 rs10869 SYNGR4 23546 19 53571289 NM_012451 NP_036583 C/T T203A minus 13042 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 120 by freq 19q13.3 synaptogyrin 4 2545 rs10869 SYNGR4 23546 19 53571289 NM_012451 NP_036583 C/T T203A minus 13042 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 120 by freq 19q13.3 synaptogyrin 4 2546 rs10869 SYNGR4 23546 19 53571289 NM_012451 NP_036583 C/T T203A minus 13042 1303 SEQUENOM CEPH CEPH (92) 92 1 120 by freq 19q13.3 synaptogyrin 4 2547 rs10885 BAT2 7916 6 31712570 NM_004638 NP_004629 C/T P1994S plus 24796277 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 2548 rs10885 BAT2 7916 6 31712570 NM_080686 NP_542417 C/T P2006S plus 24796277 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 2549 rs10963 RBP5 83758 12 7172584 NM_031491 NP_113679 C/T D19N plus 13141 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.32 100 "by cluster,freq" 12p13.31 "retinol binding protein 5, cellular" 2550 rs10963 RBP5 83758 12 7172584 NM_031491 NP_113679 C/T D19N plus 13141 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.23 100 "by cluster,freq" 12p13.31 "retinol binding protein 5, cellular" 2551 rs10963 RBP5 83758 12 7172584 NM_031491 NP_113679 C/T D19N plus 13141 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.47 100 "by cluster,freq" 12p13.31 "retinol binding protein 5, cellular" 2552 rs10963 RBP5 83758 12 7172584 NM_031491 NP_113679 C/T D19N plus 3232032 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 100 "by cluster,freq" 12p13.31 "retinol binding protein 5, cellular" 2553 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 13168 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2554 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 13168 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.17 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2555 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 13168 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.09 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2556 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 13168 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.24 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2557 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 4949406 738 YUSUKE JBIC-ALLELE Japanese (752) 1088 0.22 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2558 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 4949406 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2559 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 4949406 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2560 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 24351928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2561 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 24351928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2562 rs10988 LARS 51520 5 145480189 NM_020117 NP_064502 C/T R1088K plus 24351928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 5q32 leucyl-tRNA synthetase 2563 rs11106 MKI67 4288 10 129789768 NM_002417 NP_002408 C/G T3150S minus 13291 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.43 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2564 rs11106 MKI67 4288 10 129789768 NM_002417 NP_002408 C/G T3150S minus 1525715 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.46 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2565 rs11106 MKI67 4288 10 129789768 NM_002417 NP_002408 C/G T3150S minus 1525715 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.45 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2566 rs11106 MKI67 4288 10 129789768 NM_002417 NP_002408 C/G T3150S minus 1525715 640 TSC-CSHL TSC_42_A TSC Asian (42) 42 0.5 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2567 rs11106 MKI67 4288 10 129789768 NM_002417 NP_002408 C/G T3150S minus 10583404 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 2568 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 13313 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2569 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 13313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2570 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 1529930 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2571 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 1529930 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2572 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 1529930 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2573 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 14477154 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2574 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 24152003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2575 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 24152003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2576 rs11127 GNLY 10578 2 85836387 NM_006433 NP_006424 C/T T119I plus 24152003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2p12-q11 granulysin 2577 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 13347 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2578 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 13347 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2579 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 1512972 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.27 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2580 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 1512972 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.21 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2581 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 1512972 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.16 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2582 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 3241107 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.03 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2583 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 24146236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2584 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 24146236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2585 rs11159 RNASET2 8635 6 167313552 NM_003730 NP_003721 C/T R236W minus 24146236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,freq,cluster" 6q27 ribonuclease T2 2586 rs11177 NS 26354 3 52696345 NM_014366 NP_055181 C/T R39Q minus 13366 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2587 rs11177 NS 26354 3 52696345 NM_014366 NP_055181 C/T R39Q minus 1374181 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2588 rs11177 NS 26354 3 52696345 NM_014366 NP_055181 C/T R39Q minus 3251549 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.5 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2589 rs11177 NS 26354 3 52696345 NM_206825 NP_996561 C/T R27Q minus 13366 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2590 rs11177 NS 26354 3 52696345 NM_206825 NP_996561 C/T R27Q minus 1374181 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2591 rs11177 NS 26354 3 52696345 NM_206825 NP_996561 C/T R27Q minus 3251549 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.5 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2592 rs11177 NS 26354 3 52696345 NM_206826 NP_996562 C/T R27Q minus 13366 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2593 rs11177 NS 26354 3 52696345 NM_206826 NP_996562 C/T R27Q minus 1374181 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2594 rs11177 NS 26354 3 52696345 NM_206826 NP_996562 C/T R27Q minus 3251549 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.5 120 "by doubleHit,freq,cluster" 3p21.31 nucleostemin 2595 rs11250 CENPC1 1060 4 68208981 NM_001812 NP_001803 C/T L341F minus 5528842 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "by doubleHit,freq,cluster" 4q12-q13.3 centromere protein C 1 2596 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 13474 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2597 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 11055362 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2598 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 11055362 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2599 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 24435404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2600 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 24435404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2601 rs11276 DO 420 12 14884706 NM_021071 NP_066549 A/G D265N minus 24435404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 Dombrock blood group 2602 rs11357 MTIF2 4528 2 55381766 NM_002453 NP_002444 A/G V556I minus 13561 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.15 121 "by doubleHit,freq,cluster" 2p14-p16 mitochondrial translational initiation factor 2 2603 rs11357 MTIF2 4528 2 55381766 NM_002453 NP_002444 A/G V556I minus 3177497 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.37 121 "by doubleHit,freq,cluster" 2p14-p16 mitochondrial translational initiation factor 2 2604 rs11435 SH3RF2 153769 5 145422326 NM_152550 NP_689763 A/G V687I plus 4174146 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 2605 rs11435 SH3RF2 153769 5 145422326 NM_152550 NP_689763 A/G V687I plus 4174146 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 2606 rs11435 SH3RF2 153769 5 145422326 NM_152550 NP_689763 A/G V687I plus 24136232 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 2607 rs11435 SH3RF2 153769 5 145422326 NM_152550 NP_689763 A/G V687I plus 24136232 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 2608 rs11435 SH3RF2 153769 5 145422326 NM_152550 NP_689763 A/G V687I plus 24136232 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 2609 rs11474 AKR1C2 1646 10 5030884 NM_001354 NP_001345 A/T F168Y plus 13684 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 108 by freq 10p15-p14 "aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III)" 2610 rs11474 AKR1C2 1646 10 5030884 NM_205845 NP_995317 A/T F168Y plus 13684 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 108 by freq 10p15-p14 "aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III)" 2611 rs11479 ECGF1 1890 22 49254380 NM_001953 NP_001944 C/T S471L minus 13689 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 22q13.33 endothelial cell growth factor 1 (platelet-derived) 2612 rs11499 FXR1 8087 3 182176757 NM_005087 NP_005078 C/T A614V plus 13713 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 123 by freq 3q28 "fragile X mental retardation, autosomal homolog 1" 2613 rs11499 FXR1 8087 3 182176757 NM_005087 NP_005078 C/T A614V plus 13713 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 by freq 3q28 "fragile X mental retardation, autosomal homolog 1" 2614 rs11502 IRF2BP2 359948 1 231051215 NM_182972 NP_892017 C/T A254V minus 4428767 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 by freq 1q42.3 interferon regulatory factor 2 binding protein 2 2615 rs11551 FBLN1 2192 22 44279529 NM_001996 NP_001987 G/T R633L plus 13769 1303 SEQUENOM CEPH CEPH (92) 92 0.12 120 by freq 22q13.31 fibulin 1 2616 rs11574 ID3 3399 1 23630804 NM_002167 NP_002158 A/G T105A minus 13793 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 121 "HapMap,doubleHit,submitter,freq,cluster" 1p36.13-p36.12 "inhibitor of DNA binding 3, dominant negative helix-loop-helix protein" 2617 rs11574 ID3 3399 1 23630804 NM_002167 NP_002158 A/G T105A minus 3069953 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,submitter,freq,cluster" 1p36.13-p36.12 "inhibitor of DNA binding 3, dominant negative helix-loop-helix protein" 2618 rs11607 MBTPS1 8720 16 82645548 NM_201268 NP_957720 A/G S627N minus 13830 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 121 "HapMap,doubleHit,freq,cluster" 16q24 "membrane-bound transcription factor protease, site 1" 2619 rs11607 MBTPS1 8720 16 82645548 NM_201268 NP_957720 A/G S627N minus 3217930 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.42 121 "HapMap,doubleHit,freq,cluster" 16q24 "membrane-bound transcription factor protease, site 1" 2620 rs11607 MBTPS1 8720 16 82645548 NM_201268 NP_957720 A/G S627N minus 19343224 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 121 "HapMap,doubleHit,freq,cluster" 16q24 "membrane-bound transcription factor protease, site 1" 2621 rs11746 FREB 84824 1 158414794 NM_032738 NP_116127 A/G R349Q plus 13980 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.44 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 2622 rs11746 FREB 84824 1 158414794 NM_032738 NP_116127 A/G R349Q plus 1291097 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 2623 rs11746 FREB 84824 1 158414794 NM_032738 NP_116127 A/G R349Q plus 24244157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 2624 rs11746 FREB 84824 1 158414794 NM_032738 NP_116127 A/G R349Q plus 24244157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 2625 rs11746 FREB 84824 1 158414794 NM_032738 NP_116127 A/G R349Q plus 24244157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 2626 rs11989 Magmas 51025 16 4330359 NM_016069 NP_057153 G/T Q114K plus 2986040 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.11 96 "HapMap,freq,cluster" 16p13.3 mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction 2627 rs11989 Magmas 51025 16 4330359 NM_016069 NP_057153 G/T Q114K plus 2986040 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 96 "HapMap,freq,cluster" 16p13.3 mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction 2628 rs11989 Magmas 51025 16 4330359 NM_016069 NP_057153 G/T Q114K plus 2986040 1303 SEQUENOM CEPH CEPH (92) 92 0.05 96 "HapMap,freq,cluster" 16p13.3 mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction 2629 rs12075 FY 2532 1 155988427 NM_002036 NP_002027 A/G G42D plus 14327 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.5 121 "by doubleHit,freq,cluster" 1q21-q22 Duffy blood group 2630 rs12075 FY 2532 1 155988427 NM_002036 NP_002027 A/G G42D plus 2580084 1303 SEQUENOM CEPH CEPH (92) 46 0.5 121 "by doubleHit,freq,cluster" 1q21-q22 Duffy blood group 2631 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 2518485 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2632 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 2518485 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2633 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 2518485 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 2 1 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2634 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 2518485 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 190 0.16 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2635 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 3225658 738 YUSUKE JBIC-ALLELE Japanese (752) 1232 0.13 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2636 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 24567925 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2637 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 24567925 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2638 rs12110 FXYD5 53827 19 40352348 NM_014164 NP_054883 A/G R176H plus 24567925 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2639 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 2518485 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2640 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 2518485 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2641 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 2518485 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 2 1 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2642 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 2518485 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 190 0.16 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2643 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 3225658 738 YUSUKE JBIC-ALLELE Japanese (752) 1232 0.13 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2644 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 24567925 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2645 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 24567925 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2646 rs12110 FXYD5 53827 19 40352348 NM_144779 NP_659003 A/G R176H plus 24567925 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 19q12-q13.1 FXYD domain containing ion transport regulator 5 2647 rs12125 RAB34 83871 17 24066192 NM_031934 NP_114140 C/G V197L plus 14380 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.11 52 by freq 17q11.2 "RAB34, member RAS oncogene family" 2648 rs12125 RAB34 83871 17 24066192 NM_031934 NP_114140 C/G V197L plus 14380 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 52 by freq 17q11.2 "RAB34, member RAS oncogene family" 2649 rs12125 RAB34 83871 17 24066192 NM_031934 NP_114140 C/G V197L plus 14380 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 52 by freq 17q11.2 "RAB34, member RAS oncogene family" 2650 rs12157 WINS1 55180 15 98927317 NM_018148 NP_060618 C/G E641D minus 14412 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.47 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2651 rs12157 WINS1 55180 15 98927317 NM_018148 NP_060618 C/G E641D minus 10782196 1303 SEQUENOM CEPH CEPH (92) 93 0.47 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2652 rs12157 WINS1 55180 15 98927317 NM_018148 NP_060618 C/G E641D minus 24595387 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2653 rs12157 WINS1 55180 15 98927317 NM_018148 NP_060618 C/G E641D minus 24595387 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2654 rs12157 WINS1 55180 15 98927317 NM_018148 NP_060618 C/G E641D minus 24595387 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 2655 rs12281 HDLBP 3069 2 241889022 NM_005336 NP_005327 G/T W1264L minus 14547 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 2q37 high density lipoprotein binding protein (vigilin) 2656 rs12281 HDLBP 3069 2 241889022 NM_203346 NP_976221 G/T W1264L minus 14547 1303 SEQUENOM CEPH CEPH (92) 92 0.02 52 by freq 2q37 high density lipoprotein binding protein (vigilin) 2657 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 14608 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by cluster,freq" 8p22 cathepsin B 2658 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 20183 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by cluster,freq" 8p22 cathepsin B 2659 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 1457603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.43 123 "by cluster,freq" 8p22 cathepsin B 2660 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 1457603 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by cluster,freq" 8p22 cathepsin B 2661 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 1457603 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by cluster,freq" 8p22 cathepsin B 2662 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 1457603 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by cluster,freq" 8p22 cathepsin B 2663 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 1457603 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by cluster,freq" 8p22 cathepsin B 2664 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 3207978 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.49 123 "by cluster,freq" 8p22 cathepsin B 2665 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 5682552 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by cluster,freq" 8p22 cathepsin B 2666 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 23967647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by cluster,freq" 8p22 cathepsin B 2667 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 23967647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 cathepsin B 2668 rs12338 CTSB 1508 8 11748297 NM_001908 NP_001899 C/G L26V minus 23967647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by cluster,freq" 8p22 cathepsin B 2669 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 14608 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by cluster,freq" 8p22 cathepsin B 2670 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 20183 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by cluster,freq" 8p22 cathepsin B 2671 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 1457603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.43 123 "by cluster,freq" 8p22 cathepsin B 2672 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 1457603 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by cluster,freq" 8p22 cathepsin B 2673 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 1457603 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by cluster,freq" 8p22 cathepsin B 2674 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 1457603 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by cluster,freq" 8p22 cathepsin B 2675 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 1457603 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by cluster,freq" 8p22 cathepsin B 2676 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 3207978 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.49 123 "by cluster,freq" 8p22 cathepsin B 2677 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 5682552 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by cluster,freq" 8p22 cathepsin B 2678 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 23967647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by cluster,freq" 8p22 cathepsin B 2679 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 23967647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 cathepsin B 2680 rs12338 CTSB 1508 8 11748297 NM_147780 NP_680090 C/G L26V minus 23967647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by cluster,freq" 8p22 cathepsin B 2681 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 14608 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by cluster,freq" 8p22 cathepsin B 2682 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 20183 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by cluster,freq" 8p22 cathepsin B 2683 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 1457603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.43 123 "by cluster,freq" 8p22 cathepsin B 2684 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 1457603 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by cluster,freq" 8p22 cathepsin B 2685 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 1457603 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by cluster,freq" 8p22 cathepsin B 2686 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 1457603 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by cluster,freq" 8p22 cathepsin B 2687 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 1457603 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by cluster,freq" 8p22 cathepsin B 2688 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 3207978 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.49 123 "by cluster,freq" 8p22 cathepsin B 2689 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 5682552 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by cluster,freq" 8p22 cathepsin B 2690 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 23967647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by cluster,freq" 8p22 cathepsin B 2691 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 23967647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 cathepsin B 2692 rs12338 CTSB 1508 8 11748297 NM_147781 NP_680091 C/G L26V minus 23967647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by cluster,freq" 8p22 cathepsin B 2693 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 14608 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by cluster,freq" 8p22 cathepsin B 2694 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 20183 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by cluster,freq" 8p22 cathepsin B 2695 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 1457603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.43 123 "by cluster,freq" 8p22 cathepsin B 2696 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 1457603 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by cluster,freq" 8p22 cathepsin B 2697 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 1457603 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by cluster,freq" 8p22 cathepsin B 2698 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 1457603 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by cluster,freq" 8p22 cathepsin B 2699 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 1457603 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by cluster,freq" 8p22 cathepsin B 2700 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 3207978 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.49 123 "by cluster,freq" 8p22 cathepsin B 2701 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 5682552 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by cluster,freq" 8p22 cathepsin B 2702 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 23967647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by cluster,freq" 8p22 cathepsin B 2703 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 23967647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 cathepsin B 2704 rs12338 CTSB 1508 8 11748297 NM_147782 NP_680092 C/G L26V minus 23967647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by cluster,freq" 8p22 cathepsin B 2705 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 14608 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.32 123 "by cluster,freq" 8p22 cathepsin B 2706 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 20183 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by cluster,freq" 8p22 cathepsin B 2707 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 1457603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.43 123 "by cluster,freq" 8p22 cathepsin B 2708 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 1457603 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by cluster,freq" 8p22 cathepsin B 2709 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 1457603 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by cluster,freq" 8p22 cathepsin B 2710 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 1457603 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by cluster,freq" 8p22 cathepsin B 2711 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 1457603 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by cluster,freq" 8p22 cathepsin B 2712 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 3207978 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.49 123 "by cluster,freq" 8p22 cathepsin B 2713 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 5682552 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by cluster,freq" 8p22 cathepsin B 2714 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 23967647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by cluster,freq" 8p22 cathepsin B 2715 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 23967647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 cathepsin B 2716 rs12338 CTSB 1508 8 11748297 NM_147783 NP_680093 C/G L26V minus 23967647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by cluster,freq" 8p22 cathepsin B 2717 rs12505 CKB 1152 14 103056022 NM_001823 NP_001814 C/T L360F minus 24796478 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 by freq 14q32 "creatine kinase, brain" 2718 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 14808 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.4 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2719 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 2827711 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.43 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2720 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 2827711 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 42 0.5 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2721 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 2827711 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.05 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2722 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 2827711 1303 SEQUENOM CEPH CEPH (92) 93 0.4 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2723 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 3243083 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.11 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2724 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 6903636 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.45 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2725 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 6903636 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.39 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2726 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 6903636 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2727 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 6903636 777 SNP500CANCER HISP1 Hispanic (23) 46 0.48 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2728 rs12529 AKR1C3 8644 10 5126651 NM_003739 NP_003730 C/G H5Q plus 6903636 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.1 121 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 2729 rs12584 RBAF600 23352 1 19158567 NM_020765 NP_065816 A/T M4867L minus 14868 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.35 121 "by doubleHit,freq,cluster" 1p36.13 retinoblastoma-associated factor 600 2730 rs12584 RBAF600 23352 1 19158567 NM_020765 NP_065816 A/T M4867L minus 3209653 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.2 121 "by doubleHit,freq,cluster" 1p36.13 retinoblastoma-associated factor 600 2731 rs12584 RBAF600 23352 1 19158567 NM_020765 NP_065816 A/T M4867L minus 20598685 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "by doubleHit,freq,cluster" 1p36.13 retinoblastoma-associated factor 600 2732 rs12614 BF 629 6 32022158 NM_001710 NP_001701 C/T R32W plus 5606985 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.17 123 by freq 6p21.3 "B-factor, properdin" 2733 rs12614 BF 629 6 32022158 NM_001710 NP_001701 C/T R32W plus 5606985 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 28 0.07 123 by freq 6p21.3 "B-factor, properdin" 2734 rs12614 BF 629 6 32022158 NM_001710 NP_001701 C/T R32W plus 12674482 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.17 123 by freq 6p21.3 "B-factor, properdin" 2735 rs12614 BF 629 6 32022158 NM_001710 NP_001701 C/T R32W plus 12674482 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 by freq 6p21.3 "B-factor, properdin" 2736 rs12763 SURF2 6835 9 133256814 NM_017503 NP_059973 A/G S213G plus 15059 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.39 120 "by cluster,freq" 9q34.2 surfeit 2 2737 rs12763 SURF2 6835 9 133256814 NM_017503 NP_059973 A/G S213G plus 1632340 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by cluster,freq" 9q34.2 surfeit 2 2738 rs12763 SURF2 6835 9 133256814 NM_017503 NP_059973 A/G S213G plus 3241038 738 YUSUKE JBIC-ALLELE Japanese (752) 1090 0.3 120 "by cluster,freq" 9q34.2 surfeit 2 2739 rs12770 RANBP2 5903 2 108841187 NM_006267 NP_006258 C/G P1892A minus 15067 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.22 108 by freq 2q12.3 RAN binding protein 2 2740 rs12812 MRPL23 6150 11 1934128 NM_021134 NP_066957 C/T A122T minus 15111 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.16 106 "HapMap,doubleHit,submitter,freq" 11p15.5-p15.4 mitochondrial ribosomal protein L23 2741 rs12812 MRPL23 6150 11 1934128 NM_021134 NP_066957 C/T A122T minus 1738486 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 106 "HapMap,doubleHit,submitter,freq" 11p15.5-p15.4 mitochondrial ribosomal protein L23 2742 rs12812 MRPL23 6150 11 1934128 NM_021134 NP_066957 C/T A122T minus 1738486 1303 SEQUENOM CEPH CEPH (92) 92 0.38 106 "HapMap,doubleHit,submitter,freq" 11p15.5-p15.4 mitochondrial ribosomal protein L23 2743 rs12865 BRI3 25798 7 97565195 NM_015379 NP_056194 A/G T123A plus 15167 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 by freq 7q22.1 brain protein I3 2744 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 15222 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.25 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2745 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 2924003 506 NCBI NIHPDR NIHPDR 810 0.18 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2746 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 3220975 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.12 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2747 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 5586758 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.12 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2748 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 5586758 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.11 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2749 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 5586758 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2750 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 5586758 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2751 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 5586758 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.11 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2752 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 23564520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2753 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 23564520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2754 rs12917 MGMT 4255 10 131396273 NM_002412 NP_002403 C/T L84F plus 23564520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 2755 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 75236 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.22 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2756 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 75236 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.05 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2757 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 75236 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2758 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 75236 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2759 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 24096097 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2760 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 24096097 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2761 rs12960 SPG7 6687 16 88147829 NM_003119 NP_003110 A/G R688Q plus 24096097 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 2762 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 15334 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2763 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 15334 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2764 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 14373749 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2765 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 24112453 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2766 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 24112453 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2767 rs13021 PNN 5411 14 38720675 NM_002687 NP_002678 A/G S671G plus 24112453 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 2768 rs13043 FAIM 55179 3 139830686 NM_018147 NP_060617 A/G L127S minus 3302358 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq" 3q22.3 Fas apoptotic inhibitory molecule 2769 rs13043 FAIM 55179 3 139830686 NM_018147 NP_060617 A/G L127S minus 23673661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq" 3q22.3 Fas apoptotic inhibitory molecule 2770 rs13043 FAIM 55179 3 139830686 NM_018147 NP_060617 A/G L127S minus 23673661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by submitter,freq" 3q22.3 Fas apoptotic inhibitory molecule 2771 rs13043 FAIM 55179 3 139830686 NM_018147 NP_060617 A/G L127S minus 23673661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 3q22.3 Fas apoptotic inhibitory molecule 2772 rs13090 THRAP5 10025 19 819115 NM_005481 NP_005472 A/G E874K minus 15405 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 120 "HapMap,doubleHit,freq" 19p13.3 thyroid hormone receptor associated protein 5 2773 rs13090 THRAP5 10025 19 819115 NM_005481 NP_005472 A/G E874K minus 2513099 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,freq" 19p13.3 thyroid hormone receptor associated protein 5 2774 rs13090 THRAP5 10025 19 819115 NM_005481 NP_005472 A/G E874K minus 2513099 1303 SEQUENOM CEPH CEPH (92) 92 0.26 120 "HapMap,doubleHit,freq" 19p13.3 thyroid hormone receptor associated protein 5 2775 rs13151 RNF149 284996 2 101356930 NM_173647 NP_775918 C/G D356E plus 15469 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.11 123 "by cluster,freq" 2q12.1 ring finger protein 149 2776 rs13151 RNF149 284996 2 101356930 NM_173647 NP_775918 C/G D356E plus 1681722 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by cluster,freq" 2q12.1 ring finger protein 149 2777 rs13151 RNF149 284996 2 101356930 NM_173647 NP_775918 C/G D356E plus 23251898 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 2q12.1 ring finger protein 149 2778 rs13151 RNF149 284996 2 101356930 NM_173647 NP_775918 C/G D356E plus 23251898 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 2q12.1 ring finger protein 149 2779 rs13151 RNF149 284996 2 101356930 NM_173647 NP_775918 C/G D356E plus 23251898 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q12.1 ring finger protein 149 2780 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 4385756 693 EGP_SNPS PDR90 NIHPDR 162 0.22 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2781 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 4385756 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2782 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 5586504 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.21 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2783 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 5586504 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.27 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2784 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 5586504 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2785 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 5586504 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2786 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 5586504 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2787 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 24431306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2788 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 24431306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2789 rs13181 ERCC2 2068 19 50546759 NM_000400 NP_000391 G/T K751Q plus 24431306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 2790 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 15619 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.42 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2791 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 3242326 738 YUSUKE JBIC-ALLELE Japanese (752) 1118 0.3 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2792 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 4057396 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2793 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 24275658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2794 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 24275658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2795 rs13294 ECM1 1893 1 147298060 NM_004425 NP_004416 A/G G415S plus 24275658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2796 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 15619 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.42 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2797 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 3242326 738 YUSUKE JBIC-ALLELE Japanese (752) 1118 0.3 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2798 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 4057396 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2799 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 24275658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2800 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 24275658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2801 rs13294 ECM1 1893 1 147298060 NM_022664 NP_073155 A/G G290S plus 24275658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q21 extracellular matrix protein 1 2802 rs13303 STAB1 23166 3 52533048 NM_015136 NP_055951 C/T M2506T plus 15628 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.47 123 "HapMap,freq" 3p21.31 stabilin 1 2803 rs13303 STAB1 23166 3 52533048 NM_015136 NP_055951 C/T M2506T plus 6456184 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,freq" 3p21.31 stabilin 1 2804 rs13321 TNC 3371 9 114872137 NM_002160 NP_002151 C/G E2008Q minus 15647 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 2805 rs13321 TNC 3371 9 114872137 NM_002160 NP_002151 C/G E2008Q minus 15647 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 2806 rs13321 TNC 3371 9 114872137 NM_002160 NP_002151 C/G E2008Q minus 3210629 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.45 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 2807 rs13321 TNC 3371 9 114872137 NM_002160 NP_002151 C/G E2008Q minus 17996538 1303 SEQUENOM CEPH CEPH (92) 92 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 2808 rs13412 SC65 10609 17 37220968 NM_006455 NP_006446 A/G Q186R minus 15740 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.36 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21.31 synaptonemal complex protein SC65 2809 rs13412 SC65 10609 17 37220968 NM_006455 NP_006446 A/G Q186R minus 15740 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21.31 synaptonemal complex protein SC65 2810 rs13412 SC65 10609 17 37220968 NM_006455 NP_006446 A/G Q186R minus 3197818 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.49 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21.31 synaptonemal complex protein SC65 2811 rs13412 SC65 10609 17 37220968 NM_006455 NP_006446 A/G Q186R minus 14281150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21.31 synaptonemal complex protein SC65 2812 rs13412 SC65 10609 17 37220968 NM_006455 NP_006446 A/G Q186R minus 14281150 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21.31 synaptonemal complex protein SC65 2813 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 15756 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.38 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2814 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 4928180 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.29 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2815 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.44 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2816 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2817 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2818 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2819 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2820 rs13428 ADPRTL1 143 13 23907441 NM_006437 NP_006428 C/G G1280R minus 5586208 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 2821 rs13538 NAT8 9027 2 73779983 NM_003960 NP_003951 C/T F143S minus 15872 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.41 123 "by doubleHit,freq,cluster" 2p13.1-p12 N-acetyltransferase 8 (camello like) 2822 rs13538 NAT8 9027 2 73779983 NM_003960 NP_003951 C/T F143S minus 16833592 1303 SEQUENOM CEPH CEPH (92) 93 0.41 123 "by doubleHit,freq,cluster" 2p13.1-p12 N-acetyltransferase 8 (camello like) 2823 rs13538 NAT8 9027 2 73779983 NM_003960 NP_003951 C/T F143S minus 23703251 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "by doubleHit,freq,cluster" 2p13.1-p12 N-acetyltransferase 8 (camello like) 2824 rs13538 NAT8 9027 2 73779983 NM_003960 NP_003951 C/T F143S minus 23703251 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.47 123 "by doubleHit,freq,cluster" 2p13.1-p12 N-acetyltransferase 8 (camello like) 2825 rs13538 NAT8 9027 2 73779983 NM_003960 NP_003951 C/T F143S minus 23703251 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 2p13.1-p12 N-acetyltransferase 8 (camello like) 2826 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 15909 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.25 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2827 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 815745 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2828 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 815745 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.25 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2829 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 815745 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2830 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 815745 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.12 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2831 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 1385235 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 60 0.05 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2832 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 1385235 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.23 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2833 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 3190995 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.43 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2834 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 5467515 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2835 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 23157298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2836 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 23157298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2837 rs13571 MRPL37 51253 1 54393941 NM_016491 NP_057575 C/G C366S minus 23157298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 1p32.1 mitochondrial ribosomal protein L37 2838 rs13622 CDC2L5 8621 7 39764499 NM_003718 NP_003709 C/T S340F plus 15964 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.31 52 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 2839 rs13622 CDC2L5 8621 7 39764499 NM_003718 NP_003709 C/T S340F plus 15964 1303 SEQUENOM CEPH CEPH (92) 92 0.31 52 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 2840 rs13622 CDC2L5 8621 7 39764499 NM_031267 NP_112557 C/T S340F plus 15964 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.31 52 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 2841 rs13622 CDC2L5 8621 7 39764499 NM_031267 NP_112557 C/T S340F plus 15964 1303 SEQUENOM CEPH CEPH (92) 92 0.31 52 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 2842 rs13628 RTBDN 83546 19 12797617 NM_031429 NP_113617 C/G G230A plus 10941168 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 19p12 retbindin 2843 rs13628 RTBDN 83546 19 12797617 NM_031429 NP_113617 C/G G230A plus 10941168 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,doubleHit,freq,cluster" 19p12 retbindin 2844 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 3177778 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.29 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2845 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 4474783 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.44 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2846 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 5587265 693 EGP_SNPS PDR90 NIHPDR 176 0.2 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2847 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 5587265 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.15 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2848 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 5587265 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2849 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 23618880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2850 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 23618880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2851 rs13706 CDC6 990 17 35710677 NM_001254 NP_001245 A/G V441I plus 23618880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,freq,cluster" 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 2852 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 14247279 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2853 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 16335497 901 AFFY AfAm 12 1 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2854 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 16335497 902 AFFY Caucasian 22 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2855 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 16335497 903 AFFY Asian 12 0.42 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2856 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 16335497 904 AFFY CEPH 12 0.17 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2857 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 16335497 905 AFFY PDpanel 44 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2858 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 24326919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2859 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 24326919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2860 rs13787 PPA2 27068 4 106675033 NM_006903 NP_008834 C/G K222N plus 24326919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2861 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 14247279 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2862 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 16335497 901 AFFY AfAm 12 1 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2863 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 16335497 902 AFFY Caucasian 22 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2864 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 16335497 903 AFFY Asian 12 0.42 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2865 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 16335497 904 AFFY CEPH 12 0.17 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2866 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 16335497 905 AFFY PDpanel 44 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2867 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 24326919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2868 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 24326919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2869 rs13787 PPA2 27068 4 106675033 NM_176866 NP_789842 C/G K149N plus 24326919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2870 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 14247279 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2871 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 16335497 901 AFFY AfAm 12 1 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2872 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 16335497 902 AFFY Caucasian 22 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2873 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 16335497 903 AFFY Asian 12 0.42 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2874 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 16335497 904 AFFY CEPH 12 0.17 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2875 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 16335497 905 AFFY PDpanel 44 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2876 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 24326919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2877 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 24326919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2878 rs13787 PPA2 27068 4 106675033 NM_176867 NP_789843 C/G K85N plus 24326919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2879 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 14247279 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2880 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 16335497 901 AFFY AfAm 12 1 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2881 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 16335497 902 AFFY Caucasian 22 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2882 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 16335497 903 AFFY Asian 12 0.42 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2883 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 16335497 904 AFFY CEPH 12 0.17 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2884 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 16335497 905 AFFY PDpanel 44 0.36 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2885 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 24326919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2886 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 24326919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2887 rs13787 PPA2 27068 4 106675033 NM_176869 NP_789845 C/G K282N plus 24326919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 4q25 inorganic pyrophosphatase 2 2888 rs13807 FAU 2197 11 64645610 NM_001997 NP_001988 C/T T53I minus 870143 555 UUGC NIH90 NIHPDR 180 0.01 120 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 2889 rs13807 FAU 2197 11 64645610 NM_001997 NP_001988 C/T T53I minus 12709616 693 EGP_SNPS PDR90 NIHPDR 180 0.01 120 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 2890 rs13807 FAU 2197 11 64645610 NM_001997 NP_001988 C/T T53I minus 12709616 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 2891 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 16169 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.28 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2892 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.3 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2893 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 42 0.5 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2894 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.4 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2895 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 767 TSC-CSHL WICGR2_CAUCASIAN WICGR Caucasian (93) 80 0.23 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2896 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 100 0.28 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2897 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 84 0.42 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2898 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 130 0.17 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2899 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 901 AFFY AfAm 12 0.17 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2900 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 902 AFFY Caucasian 24 0.38 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2901 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 903 AFFY Asian 6 0.5 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2902 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 904 AFFY CEPH 12 0.42 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2903 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 22576 905 AFFY PDpanel 40 0.38 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2904 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 2986985 738 YUSUKE JBIC-ALLELE Japanese (752) 928 0.43 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2905 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 8011473 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2906 rs13815 MT 27349 22 41853812 NM_173467 NP_775738 C/G A246G minus 8011473 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "HapMap,doubleHit,freq,cluster" 22q13.31 malonyl-CoA:acyl carrier protein transacylase (malonyltransferase) 2907 rs13817 MUS81 80198 11 65384910 NM_025128 NP_079404 A/G R37H plus 16171 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.2 121 "by doubleHit,freq,cluster" 11q13 MUS81 endonuclease homolog (yeast) 2908 rs13817 MUS81 80198 11 65384910 NM_025128 NP_079404 A/G R37H plus 1727380 1303 SEQUENOM CEPH CEPH (92) 92 0.2 121 "by doubleHit,freq,cluster" 11q13 MUS81 endonuclease homolog (yeast) 2909 rs13864 DSCR9 257203 21 37515490 NM_148675 NP_683516 A/C R76L minus 16221 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 123 "by doubleHit,submitter,freq,cluster" 21q22.13 Down syndrome critical region gene 9 2910 rs13864 DSCR9 257203 21 37515490 NM_148675 NP_683516 A/C R76L minus 12502434 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,submitter,freq,cluster" 21q22.13 Down syndrome critical region gene 9 2911 rs13864 DSCR9 257203 21 37515490 NM_148675 NP_683516 A/C R76L minus 23802558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.31 123 "by doubleHit,submitter,freq,cluster" 21q22.13 Down syndrome critical region gene 9 2912 rs13864 DSCR9 257203 21 37515490 NM_148675 NP_683516 A/C R76L minus 23802558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.42 123 "by doubleHit,submitter,freq,cluster" 21q22.13 Down syndrome critical region gene 9 2913 rs13864 DSCR9 257203 21 37515490 NM_148675 NP_683516 A/C R76L minus 23802558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by doubleHit,submitter,freq,cluster" 21q22.13 Down syndrome critical region gene 9 2914 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 3236130 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2915 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 5208762 885 TSC-CSHL HapMap-CEPH-30-trios 106 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2916 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 16335299 901 AFFY AfAm 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2917 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 16335299 902 AFFY Caucasian 11 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2918 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 16335299 903 AFFY Asian 10 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2919 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 16335299 904 AFFY CEPH 12 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2920 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 16335299 905 AFFY PDpanel 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2921 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 24304887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2922 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 24304887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2923 rs13874 SLC25A26 115286 3 66502646 NM_173471 NP_775742 A/G T120M minus 24304887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "solute carrier family 25, member 26" 2924 rs13894 SAT2 112483 17 7470627 NM_133491 NP_597998 C/T R126C minus 3228301 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.06 120 "HapMap,doubleHit,freq,cluster" 17p13.2 spermidine/spermine N1-acetyltransferase 2 2925 rs13894 SAT2 112483 17 7470627 NM_133491 NP_597998 C/T R126C minus 14295724 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 120 "HapMap,doubleHit,freq,cluster" 17p13.2 spermidine/spermine N1-acetyltransferase 2 2926 rs13894 SAT2 112483 17 7470627 NM_133491 NP_597998 C/T R126C minus 14295724 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 "HapMap,doubleHit,freq,cluster" 17p13.2 spermidine/spermine N1-acetyltransferase 2 2927 rs13898 AEBP1 165 7 43927065 NM_001129 NP_001120 A/G V1148I plus 4479021 693 EGP_SNPS PDR90 NIHPDR 170 0.01 121 "HapMap,freq,cluster" 7p13 AE binding protein 1 2928 rs13898 AEBP1 165 7 43927065 NM_001129 NP_001120 A/G V1148I plus 4479021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,freq,cluster" 7p13 AE binding protein 1 2929 rs13898 AEBP1 165 7 43927065 NM_001129 NP_001120 A/G V1148I plus 4479021 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "HapMap,freq,cluster" 7p13 AE binding protein 1 2930 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 89200 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2931 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 89200 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2932 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 2989612 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1390 0.43 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2933 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 24217057 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2934 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 24217057 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2935 rs13926 TRAP1 10131 16 3664466 NM_016292 NP_057376 C/G R307G minus 24217057 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 16p13.3 heat shock protein 75 2936 rs13928 AEBP1 165 7 43927020 NM_001129 NP_001120 A/G K1133E plus 3177826 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.45 121 "by doubleHit,freq,cluster" 7p13 AE binding protein 1 2937 rs13928 AEBP1 165 7 43927020 NM_001129 NP_001120 A/G K1133E plus 3177826 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,freq,cluster" 7p13 AE binding protein 1 2938 rs13962 FY 2532 1 155988600 NM_002036 NP_002027 A/G A100T plus 2580085 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq,cluster" 1q21-q22 Duffy blood group 2939 rs13963 TNA 7123 3 45052127 NM_003278 NP_003269 A/G G106S plus 16325 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 123 "by doubleHit,freq,cluster" 3p22-p21.3 tetranectin (plasminogen binding protein) 2940 rs13963 TNA 7123 3 45052127 NM_003278 NP_003269 A/G G106S plus 6448948 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 3p22-p21.3 tetranectin (plasminogen binding protein) 2941 rs13991 TXNL2 10539 10 131824737 NM_006541 NP_006532 C/G Q21H minus 3209926 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.08 120 "by cluster,freq" 6p25.3 thioredoxin-like 2 2942 rs13991 TXNL2 10539 10 131824737 NM_006541 NP_006532 C/G Q21H minus 3209926 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 6p25.3 thioredoxin-like 2 2943 rs14008 TACSTD2 4070 1 58754202 NM_002353 NP_002344 A/C D216E minus 650638 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by doubleHit,freq,cluster" 1p32-p31 tumor-associated calcium signal transducer 2 2944 rs14008 TACSTD2 4070 1 58754202 NM_002353 NP_002344 A/C D216E minus 3219742 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.11 123 "by doubleHit,freq,cluster" 1p32-p31 tumor-associated calcium signal transducer 2 2945 rs14008 TACSTD2 4070 1 58754202 NM_002353 NP_002344 A/C D216E minus 24796670 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "by doubleHit,freq,cluster" 1p32-p31 tumor-associated calcium signal transducer 2 2946 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 16388 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.42 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2947 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 3869018 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.34 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2948 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 5011704 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.36 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2949 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 16565519 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2950 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 23957083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2951 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 23957083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2952 rs14024 KRT1 3848 12 51355281 NM_006121 NP_006112 A/G K633R minus 23957083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 2953 rs14115 HSPC051 29796 22 28488080 NM_013387 NP_037519 A/G I47V plus 3226471 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.05 123 "HapMap,submitter,freq,cluster" 22cen-q12.3 ubiquinol-cytochrome c reductase complex (7.2 kD) 2954 rs14115 HSPC051 29796 22 28488080 NM_013387 NP_037519 A/G I47V plus 3226471 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,submitter,freq,cluster" 22cen-q12.3 ubiquinol-cytochrome c reductase complex (7.2 kD) 2955 rs14115 HSPC051 29796 22 28488080 NM_013387 NP_037519 A/G I47V plus 23592348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 22cen-q12.3 ubiquinol-cytochrome c reductase complex (7.2 kD) 2956 rs14115 HSPC051 29796 22 28488080 NM_013387 NP_037519 A/G I47V plus 23592348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 22cen-q12.3 ubiquinol-cytochrome c reductase complex (7.2 kD) 2957 rs14115 HSPC051 29796 22 28488080 NM_013387 NP_037519 A/G I47V plus 23592348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 22cen-q12.3 ubiquinol-cytochrome c reductase complex (7.2 kD) 2958 rs15233 RAB9P40 10244 9 125075693 NM_005833 NP_005824 G/T M333I plus 17626 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 by freq 9q34.11 Rab9 effector p40 2959 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.11 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2960 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.07 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2961 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2962 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.13 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2963 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2964 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 1484139 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2965 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 24685232 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2966 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 24685232 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2967 rs15251 TCOF1 6949 5 149756425 NM_000356 NP_000347 C/T A1313V plus 24685232 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 2968 rs15547 CAPZA3 93661 12 18783238 NM_033328 NP_201585 A/G R257X minus 16245660 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 by freq 12p12.3 "capping protein (actin filament) muscle Z-line, alpha 3" 2969 rs15648 COPG 22820 3 130473840 NM_016128 NP_057212 A/G M681T minus 18062 1303 SEQUENOM CEPH CEPH (92) 92 0.04 52 by freq 3q21.3 "coatomer protein complex, subunit gamma" 2970 rs15772 RPP38 10557 10 15185861 NM_006414 NP_006405 C/G A181G plus 18187 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 120 "by doubleHit,freq" 10p13 ribonuclease P/MRP 38kDa subunit 2971 rs15772 RPP38 10557 10 15185861 NM_006414 NP_006405 C/G A181G plus 18187 1303 SEQUENOM CEPH CEPH (92) 92 0.26 120 "by doubleHit,freq" 10p13 ribonuclease P/MRP 38kDa subunit 2972 rs15772 RPP38 10557 10 15185861 NM_183005 NP_892117 C/G A181G plus 18187 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.26 120 "by doubleHit,freq" 10p13 ribonuclease P/MRP 38kDa subunit 2973 rs15772 RPP38 10557 10 15185861 NM_183005 NP_892117 C/G A181G plus 18187 1303 SEQUENOM CEPH CEPH (92) 92 0.26 120 "by doubleHit,freq" 10p13 ribonuclease P/MRP 38kDa subunit 2974 rs15783 MUC15 143662 11 26543377 NM_145650 NP_663625 A/G T202I plus 18199 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.46 121 "HapMap,doubleHit,freq,cluster" 11p14.3 mucin 15 2975 rs15783 MUC15 143662 11 26543377 NM_145650 NP_663625 A/G T202I plus 2136020 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 121 "HapMap,doubleHit,freq,cluster" 11p14.3 mucin 15 2976 rs15783 MUC15 143662 11 26543377 NM_145650 NP_663625 A/G T202I plus 2136020 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "HapMap,doubleHit,freq,cluster" 11p14.3 mucin 15 2977 rs15783 MUC15 143662 11 26543377 NM_145650 NP_663625 A/G T202I plus 3234920 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.38 121 "HapMap,doubleHit,freq,cluster" 11p14.3 mucin 15 2978 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 18316 665 CGAP-GAI POOLED_CEPH CEPH Caucasians (94) 188 0.33 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2979 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 2055335 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2980 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 2428576 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2981 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 2428576 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2982 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 2428576 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2983 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 2428576 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 184 0.41 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2984 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 24416187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2985 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 24416187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2986 rs15895 OAS2 4939 12 111911008 NM_016817 NP_058197 C/T *720W minus 24416187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 2, 69/71kDa" 2987 rs15911 CTBS 1486 1 84741098 NM_004388 NP_004379 C/T V274I plus 4391078 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 by freq 1p22 "chitobiase, di-N-acetyl-" 2988 rs15911 CTBS 1486 1 84741098 NM_004388 NP_004379 C/T V274I plus 24238464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 1p22 "chitobiase, di-N-acetyl-" 2989 rs15911 CTBS 1486 1 84741098 NM_004388 NP_004379 C/T V274I plus 24238464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1p22 "chitobiase, di-N-acetyl-" 2990 rs15911 CTBS 1486 1 84741098 NM_004388 NP_004379 C/T V274I plus 24238464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1p22 "chitobiase, di-N-acetyl-" 2991 rs15922 TAF11 6882 6 34958804 NM_005643 NP_005634 C/G T68R minus 6312498 693 EGP_SNPS PDR90 NIHPDR 180 0.02 123 "by cluster,freq" 6p21.31 "TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 2992 rs15922 TAF11 6882 6 34958804 NM_005643 NP_005634 C/G T68R minus 6312498 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 6p21.31 "TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 2993 rs15922 TAF11 6882 6 34958804 NM_005643 NP_005634 C/G T68R minus 24383722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 6p21.31 "TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 2994 rs15922 TAF11 6882 6 34958804 NM_005643 NP_005634 C/G T68R minus 24383722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.31 "TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 2995 rs15922 TAF11 6882 6 34958804 NM_005643 NP_005634 C/G T68R minus 24383722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.31 "TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 2996 rs16022 CACNA1A 773 19 13270696 NM_000068 NP_000059 C/G E918D minus 18443 1303 SEQUENOM CEPH CEPH (92) 92 0.1 108 "by cluster,freq" 19p13.2-p13.1 "calcium channel, voltage-dependent, P/Q type, alpha 1A subunit" 2997 rs16022 CACNA1A 773 19 13270696 NM_000068 NP_000059 C/G E918D minus 4938201 738 YUSUKE JBIC-ALLELE Japanese (752) 924 0.16 108 "by cluster,freq" 19p13.2-p13.1 "calcium channel, voltage-dependent, P/Q type, alpha 1A subunit" 2998 rs16027 CACNA1A 773 19 13258560 NM_000068 NP_000059 A/G G1105S minus 18448 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 54 "HapMap,freq" 19p13.2-p13.1 "calcium channel, voltage-dependent, P/Q type, alpha 1A subunit" 2999 rs16027 CACNA1A 773 19 13258560 NM_000068 NP_000059 A/G G1105S minus 18448 1303 SEQUENOM CEPH CEPH (92) 92 0.19 54 "HapMap,freq" 19p13.2-p13.1 "calcium channel, voltage-dependent, P/Q type, alpha 1A subunit" 3000 rs16522 ARL12 390790 17 34570514 XM_372668 XP_372668 C/T Q116R plus 24114937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.13 123 "by doubleHit,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 3001 rs16522 ARL12 390790 17 34570514 XM_372668 XP_372668 C/T Q116R plus 24114937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 "by doubleHit,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 3002 rs16522 ARL12 390790 17 34570514 XM_372668 XP_372668 C/T Q116R plus 24114937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.19 123 "by doubleHit,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 3003 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3004 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3005 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3006 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3007 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3008 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3009 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3010 rs16941 BRCA1 672 17 38497961 NM_007294 NP_009225 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3011 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3012 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3013 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3014 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3015 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3016 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3017 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3018 rs16941 BRCA1 672 17 38497961 NM_007295 NP_009226 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3019 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3020 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3021 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3022 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3023 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3024 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3025 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3026 rs16941 BRCA1 672 17 38497961 NM_007296 NP_009227 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3027 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3028 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3029 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3030 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3031 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3032 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3033 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3034 rs16941 BRCA1 672 17 38497961 NM_007297 NP_009228 A/G E742G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3035 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3036 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3037 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3038 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3039 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3040 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3041 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3042 rs16941 BRCA1 672 17 38497961 NM_007299 NP_009230 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3043 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3044 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3045 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3046 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3047 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3048 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3049 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3050 rs16941 BRCA1 672 17 38497961 NM_007300 NP_009231 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3051 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3052 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3053 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3054 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3055 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3056 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3057 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3058 rs16941 BRCA1 672 17 38497961 NM_007301 NP_009232 A/G E1038G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3059 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 3176017 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3060 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 5586284 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3061 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 5586284 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3062 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 5586284 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3063 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 5586284 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3064 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 5586284 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3065 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 8486259 693 EGP_SNPS PDR90 NIHPDR 174 0.32 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3066 rs16941 BRCA1 672 17 38497961 NM_007302 NP_009233 A/G E997G minus 8486259 1303 SEQUENOM CEPH CEPH (92) 92 0.26 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 3067 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3068 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3069 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3070 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3071 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3072 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3073 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3074 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3075 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3076 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3077 rs16942 BRCA1 672 17 38497526 NM_007294 NP_009225 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3078 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3079 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3080 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3081 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3082 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3083 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3084 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3085 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3086 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3087 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3088 rs16942 BRCA1 672 17 38497526 NM_007295 NP_009226 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3089 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3090 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3091 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3092 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3093 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3094 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3095 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3096 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3097 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3098 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3099 rs16942 BRCA1 672 17 38497526 NM_007296 NP_009227 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3100 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3101 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3102 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3103 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3104 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3105 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3106 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3107 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3108 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3109 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3110 rs16942 BRCA1 672 17 38497526 NM_007297 NP_009228 A/G K887R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3111 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3112 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3113 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3114 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3115 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3116 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3117 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3118 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3119 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3120 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3121 rs16942 BRCA1 672 17 38497526 NM_007299 NP_009230 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3122 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3123 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3124 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3125 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3126 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3127 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3128 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3129 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3130 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3131 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3132 rs16942 BRCA1 672 17 38497526 NM_007300 NP_009231 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3133 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3134 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3135 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3136 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3137 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3138 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3139 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3140 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3141 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3142 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3143 rs16942 BRCA1 672 17 38497526 NM_007301 NP_009232 A/G K1183R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3144 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 19349 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3145 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 3172563 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3146 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 5586285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3147 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 5586285 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3148 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 5586285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3149 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 5586285 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3150 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 5586285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3151 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 8486262 693 EGP_SNPS PDR90 NIHPDR 170 0.33 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3152 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 24588209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3153 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 24588209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3154 rs16942 BRCA1 672 17 38497526 NM_007302 NP_009233 A/G K1142R minus 24588209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 3155 rs17118 XYLB 9942 3 38379476 NM_005108 NP_005099 A/C D85E plus 745904 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 3p22-p21.3 xylulokinase homolog (H. influenzae) 3156 rs17118 XYLB 9942 3 38379476 NM_005108 NP_005099 A/C D85E plus 3212294 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.21 123 "by doubleHit,freq,cluster" 3p22-p21.3 xylulokinase homolog (H. influenzae) 3157 rs17118 XYLB 9942 3 38379476 NM_005108 NP_005099 A/C D85E plus 23885992 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 3p22-p21.3 xylulokinase homolog (H. influenzae) 3158 rs17118 XYLB 9942 3 38379476 NM_005108 NP_005099 A/C D85E plus 23885992 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 3p22-p21.3 xylulokinase homolog (H. influenzae) 3159 rs17118 XYLB 9942 3 38379476 NM_005108 NP_005099 A/C D85E plus 23885992 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by doubleHit,freq,cluster" 3p22-p21.3 xylulokinase homolog (H. influenzae) 3160 rs17456 FDPS 2224 1 152103384 NM_002004 NP_001995 C/T I391V minus 20086 1303 SEQUENOM CEPH CEPH (92) 92 0.04 60 by freq 1q22 "farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)" 3161 rs17560 ANG 283 14 20231813 NM_001145 NP_001136 A/G K84E plus 20171 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 14q11.1-q11.2 "angiogenin, ribonuclease, RNase A family, 5" 3162 rs17560 ANG 283 14 20231813 NM_001145 NP_001136 A/G K84E plus 20171 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 14q11.1-q11.2 "angiogenin, ribonuclease, RNase A family, 5" 3163 rs17560 ANG 283 14 20231813 NM_001145 NP_001136 A/G K84E plus 23815010 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.1-q11.2 "angiogenin, ribonuclease, RNase A family, 5" 3164 rs17560 ANG 283 14 20231813 NM_001145 NP_001136 A/G K84E plus 23815010 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q11.1-q11.2 "angiogenin, ribonuclease, RNase A family, 5" 3165 rs17560 ANG 283 14 20231813 NM_001145 NP_001136 A/G K84E plus 23815010 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.1-q11.2 "angiogenin, ribonuclease, RNase A family, 5" 3166 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 20172 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3167 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 4969895 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.19 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3168 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 4969895 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.33 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3169 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 4969895 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3170 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 4969895 1303 SEQUENOM CEPH CEPH (92) 92 0.48 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3171 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 5586646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.24 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3172 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 5586646 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.36 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3173 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 5586646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3174 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 5586646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3175 rs17561 IL1A 3552 2 113253454 NM_000575 NP_000566 G/T A114S minus 5586646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.15 113 "HapMap,submitter,freq,cluster" 2q14 "interleukin 1, alpha" 3176 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 20173 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.03 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3177 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3178 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3179 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3180 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3181 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3182 rs17562 IL1A 3552 2 113253421 NM_000575 NP_000566 A/G N125D minus 5586648 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 2q14 "interleukin 1, alpha" 3183 rs17563 BMP4 652 14 53487272 NM_001202 NP_001193 C/T V152A minus 20174 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3184 rs17563 BMP4 652 14 53487272 NM_001202 NP_001193 C/T V152A minus 4042672 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3185 rs17563 BMP4 652 14 53487272 NM_001202 NP_001193 C/T V152A minus 4042672 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3186 rs17563 BMP4 652 14 53487272 NM_130850 NP_570911 C/T V152A minus 20174 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3187 rs17563 BMP4 652 14 53487272 NM_130850 NP_570911 C/T V152A minus 4042672 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3188 rs17563 BMP4 652 14 53487272 NM_130850 NP_570911 C/T V152A minus 4042672 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3189 rs17563 BMP4 652 14 53487272 NM_130851 NP_570912 C/T V152A minus 20174 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3190 rs17563 BMP4 652 14 53487272 NM_130851 NP_570912 C/T V152A minus 4042672 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3191 rs17563 BMP4 652 14 53487272 NM_130851 NP_570912 C/T V152A minus 4042672 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 14q22-q23 bone morphogenetic protein 4 3192 rs17567 EPS15 2060 1 51538942 NM_001981 NP_001972 C/T I822M plus 20178 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by doubleHit,freq,cluster" 1p32 epidermal growth factor receptor pathway substrate 15 3193 rs17567 EPS15 2060 1 51538942 NM_001981 NP_001972 C/T I822M plus 2755092 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 1p32 epidermal growth factor receptor pathway substrate 15 3194 rs17571 CTSD 1509 11 1739170 NM_001909 NP_001900 C/T A58V minus 20182 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 63 "HapMap,freq" 11p15.5 cathepsin D (lysosomal aspartyl protease) 3195 rs17571 CTSD 1509 11 1739170 NM_001909 NP_001900 C/T A58V minus 20182 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 63 "HapMap,freq" 11p15.5 cathepsin D (lysosomal aspartyl protease) 3196 rs17571 CTSD 1509 11 1739170 NM_001909 NP_001900 C/T A58V minus 20182 1303 SEQUENOM CEPH CEPH (92) 92 0.08 63 "HapMap,freq" 11p15.5 cathepsin D (lysosomal aspartyl protease) 3197 rs17580 SERPINA1 5265 14 93917015 NM_000295 NP_000286 A/T E288V minus 20191 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.03 123 by freq 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 3198 rs17580 SERPINA1 5265 14 93917015 NM_000295 NP_000286 A/T E288V minus 3881969 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 by freq 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 3199 rs17607 CD68 968 17 7425506 NM_001251 NP_001242 A/G A340T plus 20219 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.03 63 "HapMap,freq" 17p13 CD68 antigen 3200 rs17607 CD68 968 17 7425506 NM_001251 NP_001242 A/G A340T plus 20219 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 63 "HapMap,freq" 17p13 CD68 antigen 3201 rs17607 CD68 968 17 7425506 NM_001251 NP_001242 A/G A340T plus 20219 1303 SEQUENOM CEPH CEPH (92) 92 0.06 63 "HapMap,freq" 17p13 CD68 antigen 3202 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 20220 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 by freq 19q13.1 Charcot-Leyden crystal protein 3203 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 477759 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 123 by freq 19q13.1 Charcot-Leyden crystal protein 3204 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 477759 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.3 123 by freq 19q13.1 Charcot-Leyden crystal protein 3205 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 477759 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 by freq 19q13.1 Charcot-Leyden crystal protein 3206 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 477759 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.33 123 by freq 19q13.1 Charcot-Leyden crystal protein 3207 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 477759 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 by freq 19q13.1 Charcot-Leyden crystal protein 3208 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 24683968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 by freq 19q13.1 Charcot-Leyden crystal protein 3209 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 24683968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 19q13.1 Charcot-Leyden crystal protein 3210 rs17608 CLC 1178 19 44917486 NM_001828 NP_001819 C/T A28V minus 24683968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 19q13.1 Charcot-Leyden crystal protein 3211 rs17611 C5 727 9 120848754 NM_001735 NP_001726 A/G V802I minus 20223 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33-q34 complement component 5 3212 rs17611 C5 727 9 120848754 NM_001735 NP_001726 A/G V802I minus 4094354 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33-q34 complement component 5 3213 rs17611 C5 727 9 120848754 NM_001735 NP_001726 A/G V802I minus 4975679 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.5 121 "HapMap,doubleHit,submitter,freq,cluster" 9q33-q34 complement component 5 3214 rs17613 C8G 733 9 137116397 NM_000606 NP_000597 A/C H124N plus 20225 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 by freq 9q34.3 "complement component 8, gamma polypeptide" 3215 rs17613 C8G 733 9 137116397 NM_000606 NP_000597 A/C H124N plus 24810928 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 9q34.3 "complement component 8, gamma polypeptide" 3216 rs17615 CR2 1380 1 204034857 NM_001877 NP_001868 A/G S639N plus 20227 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "by doubleHit,freq,cluster" 1q32 complement component (3d/Epstein Barr virus) receptor 2 3217 rs17615 CR2 1380 1 204034857 NM_001877 NP_001868 A/G S639N plus 3210393 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.14 123 "by doubleHit,freq,cluster" 1q32 complement component (3d/Epstein Barr virus) receptor 2 3218 rs17615 CR2 1380 1 204034857 NM_001877 NP_001868 A/G S639N plus 23669121 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1q32 complement component (3d/Epstein Barr virus) receptor 2 3219 rs17615 CR2 1380 1 204034857 NM_001877 NP_001868 A/G S639N plus 23669121 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 1q32 complement component (3d/Epstein Barr virus) receptor 2 3220 rs17615 CR2 1380 1 204034857 NM_001877 NP_001868 A/G S639N plus 23669121 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 1q32 complement component (3d/Epstein Barr virus) receptor 2 3221 rs17621 DDO 8528 6 110821009 NM_003649 NP_003640 C/T H258Y minus 20233 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3222 rs17621 DDO 8528 6 110821009 NM_003649 NP_003640 C/T H258Y minus 20233 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3223 rs17621 DDO 8528 6 110821009 NM_003649 NP_003640 C/T H258Y minus 23455312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3224 rs17621 DDO 8528 6 110821009 NM_003649 NP_003640 C/T H258Y minus 23455312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q22.1 D-aspartate oxidase 3225 rs17621 DDO 8528 6 110821009 NM_003649 NP_003640 C/T H258Y minus 23455312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3226 rs17621 DDO 8528 6 110821009 NM_004032 NP_004023 C/T H199Y minus 20233 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3227 rs17621 DDO 8528 6 110821009 NM_004032 NP_004023 C/T H199Y minus 20233 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3228 rs17621 DDO 8528 6 110821009 NM_004032 NP_004023 C/T H199Y minus 23455312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3229 rs17621 DDO 8528 6 110821009 NM_004032 NP_004023 C/T H199Y minus 23455312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q22.1 D-aspartate oxidase 3230 rs17621 DDO 8528 6 110821009 NM_004032 NP_004023 C/T H199Y minus 23455312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3231 rs17622 DDO 8528 6 110821132 NM_003649 NP_003640 C/G Q217E minus 20234 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3232 rs17622 DDO 8528 6 110821132 NM_003649 NP_003640 C/G Q217E minus 20234 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3233 rs17622 DDO 8528 6 110821132 NM_003649 NP_003640 C/G Q217E minus 23455325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3234 rs17622 DDO 8528 6 110821132 NM_003649 NP_003640 C/G Q217E minus 23455325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6q22.1 D-aspartate oxidase 3235 rs17622 DDO 8528 6 110821132 NM_003649 NP_003640 C/G Q217E minus 23455325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3236 rs17622 DDO 8528 6 110821132 NM_004032 NP_004023 C/G Q158E minus 20234 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3237 rs17622 DDO 8528 6 110821132 NM_004032 NP_004023 C/G Q158E minus 20234 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3238 rs17622 DDO 8528 6 110821132 NM_004032 NP_004023 C/G Q158E minus 23455325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3239 rs17622 DDO 8528 6 110821132 NM_004032 NP_004023 C/G Q158E minus 23455325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6q22.1 D-aspartate oxidase 3240 rs17622 DDO 8528 6 110821132 NM_004032 NP_004023 C/G Q158E minus 23455325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3241 rs17623 DDO 8528 6 110820933 NM_003649 NP_003640 G/T L283R minus 20235 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3242 rs17623 DDO 8528 6 110820933 NM_003649 NP_003640 G/T L283R minus 20235 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3243 rs17623 DDO 8528 6 110820933 NM_003649 NP_003640 G/T L283R minus 23455300 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3244 rs17623 DDO 8528 6 110820933 NM_003649 NP_003640 G/T L283R minus 23455300 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q22.1 D-aspartate oxidase 3245 rs17623 DDO 8528 6 110820933 NM_003649 NP_003640 G/T L283R minus 23455300 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3246 rs17623 DDO 8528 6 110820933 NM_004032 NP_004023 G/T L224R minus 20235 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 6q22.1 D-aspartate oxidase 3247 rs17623 DDO 8528 6 110820933 NM_004032 NP_004023 G/T L224R minus 20235 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q22.1 D-aspartate oxidase 3248 rs17623 DDO 8528 6 110820933 NM_004032 NP_004023 G/T L224R minus 23455300 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3249 rs17623 DDO 8528 6 110820933 NM_004032 NP_004023 G/T L224R minus 23455300 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q22.1 D-aspartate oxidase 3250 rs17623 DDO 8528 6 110820933 NM_004032 NP_004023 G/T L224R minus 23455300 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22.1 D-aspartate oxidase 3251 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 2924028 506 NCBI NIHPDR NIHPDR 80 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3252 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 3172481 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 40 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3253 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5586520 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3254 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5586520 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3255 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5586520 776 SNP500CANCER AFR1 African / African-American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3256 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5586520 777 SNP500CANCER HISP1 Hispanic (23) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3257 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5586520 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3258 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5605326 693 EGP_SNPS PDR90 NIHPDR 178 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3259 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5605326 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3260 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 5605326 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3261 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 23280293 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3262 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 23280293 1372 PERLEGEN AFD_AFR_PANEL African American (24) 21 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3263 rs17655 ERCC5 2073 13 102326003 NM_000123 NP_000114 C/G D1104H minus 23280293 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 3264 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 23200 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.33 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3265 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 2981853 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.12 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3266 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 2981853 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.27 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3267 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 4323324 649 FHCRC POPU1 USA (20) 40 0.23 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3268 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 5586633 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.2 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3269 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 5586633 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.15 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3270 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 5586633 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3271 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 5586633 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3272 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 5586633 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.27 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3273 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 24193850 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3274 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 24193850 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3275 rs20541 IL13 3596 5 132023863 NM_002188 NP_002179 C/T Q144R minus 24193850 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 5q31 interleukin 13 3276 rs20551 EP300 2033 22 39872508 NM_001429 NP_001420 A/G I997V plus 23214 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 "by doubleHit,submitter,freq" 22q13.2 E1A binding protein p300 3277 rs20551 EP300 2033 22 39872508 NM_001429 NP_001420 A/G I997V plus 24542191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq" 22q13.2 E1A binding protein p300 3278 rs20551 EP300 2033 22 39872508 NM_001429 NP_001420 A/G I997V plus 24542191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq" 22q13.2 E1A binding protein p300 3279 rs20551 EP300 2033 22 39872508 NM_001429 NP_001420 A/G I997V plus 24542191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,submitter,freq" 22q13.2 E1A binding protein p300 3280 rs20559 LAMC1 3915 1 179831217 NM_002293 NP_002284 A/G R1121Q plus 23222 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 1q31 "laminin, gamma 1 (formerly LAMB2)" 3281 rs20559 LAMC1 3915 1 179831217 NM_002293 NP_002284 A/G R1121Q plus 23222 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 by freq 1q31 "laminin, gamma 1 (formerly LAMB2)" 3282 rs20559 LAMC1 3915 1 179831217 NM_002293 NP_002284 A/G R1121Q plus 24257529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1q31 "laminin, gamma 1 (formerly LAMB2)" 3283 rs20559 LAMC1 3915 1 179831217 NM_002293 NP_002284 A/G R1121Q plus 24257529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q31 "laminin, gamma 1 (formerly LAMB2)" 3284 rs20559 LAMC1 3915 1 179831217 NM_002293 NP_002284 A/G R1121Q plus 24257529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31 "laminin, gamma 1 (formerly LAMB2)" 3285 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 23235 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3286 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 10425508 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3287 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 10425508 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3288 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 24025169 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3289 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 24025169 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3290 rs20571 CA3 761 8 86539249 NM_005181 NP_005172 A/G V31I plus 24025169 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q22 "carbonic anhydrase III, muscle specific" 3291 rs20577 TNFRSF10A 8797 8 23138422 NM_003844 NP_003835 C/T T33I minus 23242 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 67 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 3292 rs20577 TNFRSF10A 8797 8 23138422 NM_003844 NP_003835 C/T T33I minus 23242 1303 SEQUENOM CEPH CEPH (92) 92 1 67 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 3293 rs25397 FBN1 2200 15 46724180 NM_000138 NP_000129 A/G A27T minus 28113 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 69 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3294 rs25397 FBN1 2200 15 46724180 NM_000138 NP_000129 A/G A27T minus 28113 1303 SEQUENOM CEPH CEPH (92) 92 1 69 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3295 rs25403 FBN1 2200 15 46692562 NM_000138 NP_000129 C/T R62C minus 28119 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 69 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3296 rs25409 GABRB3 2562 15 24569934 NM_021912 NP_068712 C/T P11S minus 28125 524 LDN AUTISM USA (autistic probands) 314 0.02 69 "HapMap,freq" 15q11.2-q12 "gamma-aminobutyric acid (GABA) A receptor, beta 3" 3297 rs25409 GABRB3 2562 15 24569934 NM_021912 NP_068712 C/T P11S minus 28125 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 69 "HapMap,freq" 15q11.2-q12 "gamma-aminobutyric acid (GABA) A receptor, beta 3" 3298 rs25414 ARSB 411 5 78170997 NM_000046 NP_000037 C/T S384N plus 28129 506 NCBI NIHPDR NIHPDR 38 0.05 71 by freq 5p11-q13 arylsulfatase B 3299 rs25414 ARSB 411 5 78170997 NM_198709 NP_942002 C/T S384N plus 28129 506 NCBI NIHPDR NIHPDR 38 0.05 71 by freq 5p11-q13 arylsulfatase B 3300 rs25474 XRCC1 7515 19 48741890 NM_006297 NP_006288 C/T P514L minus 28193 527 OEFNER AUTOSOME Stanford Autosome Collection 1 0.5 94 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3301 rs25474 XRCC1 7515 19 48741890 NM_006297 NP_006288 C/T P514L minus 28200 527 OEFNER AUTOSOME Stanford Autosome Collection 1 0.5 94 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3302 rs25474 XRCC1 7515 19 48741890 NM_006297 NP_006288 C/T P514L minus 28200 1303 SEQUENOM CEPH CEPH (92) 92 1 94 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3303 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 28206 527 OEFNER AUTOSOME Stanford Autosome Collection 31 0.5 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3304 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 3254965 506 NCBI NIHPDR NIHPDR 844 0.27 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3305 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 4473996 693 EGP_SNPS PDR90 NIHPDR 168 0.23 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3306 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 4473996 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3307 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 5586970 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.35 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3308 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 5586970 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3309 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 5586970 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3310 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 5586970 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3311 rs25487 XRCC1 7515 19 48747566 NM_006297 NP_006288 A/G Q399R minus 5586970 778 SNP500CANCER PAC1 Pacific Rim (24) 44 0.46 121 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3312 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 28208 527 OEFNER AUTOSOME Stanford Autosome Collection 7 0.5 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3313 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 28208 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3314 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 28208 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3315 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 3176721 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.07 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3316 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 3254966 506 NCBI NIHPDR NIHPDR 818 0.07 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3317 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 4473987 693 EGP_SNPS PDR90 NIHPDR 174 0.1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3318 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 4473987 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3319 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 5586971 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.05 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3320 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 5586971 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3321 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 5586971 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3322 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 5586971 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3323 rs25489 XRCC1 7515 19 48748252 NM_006297 NP_006288 A/G R280H minus 5586971 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.09 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3324 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 28209 527 OEFNER AUTOSOME Stanford Autosome Collection 3 0.5 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3325 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 4473989 693 EGP_SNPS PDR90 NIHPDR 172 0.01 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3326 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 4473989 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3327 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 5586980 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3328 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 5586980 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3329 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 5586980 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3330 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 5586980 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3331 rs25490 XRCC1 7515 19 48748181 NM_006297 NP_006288 A/G T304A minus 5586980 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3332 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 28210 527 OEFNER AUTOSOME Stanford Autosome Collection 2 0.5 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3333 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 3254956 506 NCBI NIHPDR NIHPDR 830 0 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3334 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 4473990 693 EGP_SNPS PDR90 NIHPDR 176 0.01 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3335 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 4473990 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3336 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 5586981 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3337 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 5586981 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3338 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 5586981 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3339 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 5586981 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3340 rs25491 XRCC1 7515 19 48748166 NM_006297 NP_006288 C/T P309S minus 5586981 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 116 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3341 rs25495 XRCC1 7515 19 48757006 NM_006297 NP_006288 A/T K51X minus 28214 527 OEFNER AUTOSOME Stanford Autosome Collection 2 0.5 71 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3342 rs25495 XRCC1 7515 19 48757006 NM_006297 NP_006288 A/T K51X minus 28214 1303 SEQUENOM CEPH CEPH (92) 92 1 71 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3343 rs25496 XRCC1 7515 19 48756942 NM_006297 NP_006288 C/T V72A minus 28215 527 OEFNER AUTOSOME Stanford Autosome Collection 2 0.5 116 "HapMap,freq,cluster" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3344 rs25496 XRCC1 7515 19 48756942 NM_006297 NP_006288 C/T V72A minus 3254957 506 NCBI NIHPDR NIHPDR 866 0.02 116 "HapMap,freq,cluster" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3345 rs25496 XRCC1 7515 19 48756942 NM_006297 NP_006288 C/T V72A minus 4473929 693 EGP_SNPS PDR90 NIHPDR 174 0.03 116 "HapMap,freq,cluster" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3346 rs25496 XRCC1 7515 19 48756942 NM_006297 NP_006288 C/T V72A minus 4473929 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,freq,cluster" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3347 rs25496 XRCC1 7515 19 48756942 NM_006297 NP_006288 C/T V72A minus 4473929 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "HapMap,freq,cluster" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 3348 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 28362 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 36 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3349 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 28362 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3350 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 3228622 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3351 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 3447822 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3352 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 24346051 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3353 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 24346051 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3354 rs25640 HSD17B4 3295 5 118839432 NM_000414 NP_000405 A/G R106H plus 24346051 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 3355 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 28367 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 60 0.1 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3356 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 3178007 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.12 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3357 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 3250769 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.19 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3358 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 23933567 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3359 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 23933567 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3360 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 23933567 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3361 rs25644 P2RX4 5025 12 120129366 NM_002560 NP_002551 A/G S242G plus 24811130 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 "by cluster,freq" 12q24.32 "purinergic receptor P2X, ligand-gated ion channel, 4" 3362 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 28376 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3363 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 28376 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 32 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3364 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 3198237 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3365 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 12586497 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3366 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 12586497 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3367 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 24057941 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3368 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 24057941 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3369 rs25653 ANPEP 290 15 88150562 NM_001150 NP_001141 A/G R86Q minus 24057941 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 3370 rs25655 CAPN2 824 1 220207143 NM_001748 NP_001739 C/G D22E plus 28378 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.1 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 3371 rs25655 CAPN2 824 1 220207143 NM_001748 NP_001739 C/G D22E plus 28378 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.03 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 3372 rs25655 CAPN2 824 1 220207143 NM_001748 NP_001739 C/G D22E plus 28378 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 3373 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 28404 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.33 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3374 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 28404 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.07 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3375 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.12 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3376 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.29 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3377 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 1 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3378 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3379 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 901 AFFY AfAm 12 0.17 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3380 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 902 AFFY Caucasian 18 0.22 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3381 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 903 AFFY Asian 12 1 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3382 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 904 AFFY CEPH 12 0.08 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3383 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 905 AFFY PDpanel 46 0.13 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3384 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 131069 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3385 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 16340789 693 EGP_SNPS PDR90 NIHPDR 180 0.14 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3386 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 24697307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3387 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 24697307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3388 rs25680 TNFRSF7 939 12 6424889 NM_001242 NP_001233 A/G A59T plus 24697307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 12p13 "tumor necrosis factor receptor superfamily, member 7" 3389 rs25683 ACAT2 39 6 160166754 NM_005891 NP_005882 A/G K211R plus 28408 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 40 0.33 102 "by cluster,freq" 6q25.3-q26 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) 3390 rs25683 ACAT2 39 6 160166754 NM_005891 NP_005882 A/G K211R plus 28408 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.19 102 "by cluster,freq" 6q25.3-q26 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) 3391 rs25683 ACAT2 39 6 160166754 NM_005891 NP_005882 A/G K211R plus 3209428 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.18 102 "by cluster,freq" 6q25.3-q26 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) 3392 rs25688 TMEM2 23670 9 71589788 NM_013390 NP_037522 A/G R245K minus 28413 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 72 "HapMap,submitter,freq" 9q13-q21 transmembrane protein 2 3393 rs25688 TMEM2 23670 9 71589788 NM_013390 NP_037522 A/G R245K minus 28413 1303 SEQUENOM CEPH CEPH (92) 92 0.07 72 "HapMap,submitter,freq" 9q13-q21 transmembrane protein 2 3394 rs25689 TMEM2 23670 9 71589650 NM_013390 NP_037522 A/G R291H minus 4925785 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.19 121 "HapMap,doubleHit,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3395 rs25689 TMEM2 23670 9 71589650 NM_013390 NP_037522 A/G R291H minus 8823705 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3396 rs25689 TMEM2 23670 9 71589650 NM_013390 NP_037522 A/G R291H minus 8823705 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3397 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 3254721 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.13 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3398 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 3254721 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3399 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 15550967 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3400 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 24560257 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3401 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 24560257 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3402 rs25692 TMEM2 23670 9 71562524 NM_013390 NP_037522 C/T P765S minus 24560257 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.03 123 "HapMap,freq,cluster" 9q13-q21 transmembrane protein 2 3403 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 3210557 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.07 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3404 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 3210557 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3405 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 3210557 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3406 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 24560361 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3407 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 24560361 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3408 rs25695 TMEM2 23670 9 71579400 NM_013390 NP_037522 A/T D423E minus 24560361 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 9q13-q21 transmembrane protein 2 3409 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 2981718 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.33 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3410 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 2981718 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.2 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3411 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 3176020 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.29 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3412 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 6903720 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.34 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3413 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 6903720 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3414 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 6903720 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3415 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 6903720 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3416 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 6903720 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.44 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3417 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 23737224 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3418 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 23737224 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3419 rs25882 CSF2 1437 5 131439359 NM_000758 NP_000749 C/T I117T plus 23737224 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 5q31.1 colony stimulating factor 2 (granulocyte-macrophage) 3420 rs25901 MYO10 4651 5 16726975 NM_012334 NP_036466 C/G S1663T plus 5312292 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,submitter,freq,cluster" 5p15.1-p14.3 myosin X 3421 rs25901 MYO10 4651 5 16726975 NM_012334 NP_036466 C/G S1663T plus 24652419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 5p15.1-p14.3 myosin X 3422 rs25901 MYO10 4651 5 16726975 NM_012334 NP_036466 C/G S1663T plus 24652419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,submitter,freq,cluster" 5p15.1-p14.3 myosin X 3423 rs25901 MYO10 4651 5 16726975 NM_012334 NP_036466 C/G S1663T plus 24652419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 5p15.1-p14.3 myosin X 3424 rs26618 ARTS-1 51752 5 96156592 NM_016442 NP_057526 C/T I276M plus 639522 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3425 rs26618 ARTS-1 51752 5 96156592 NM_016442 NP_057526 C/T I276M plus 3249717 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.26 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3426 rs26618 ARTS-1 51752 5 96156592 NM_016442 NP_057526 C/T I276M plus 24005225 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3427 rs26618 ARTS-1 51752 5 96156592 NM_016442 NP_057526 C/T I276M plus 24005225 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3428 rs26618 ARTS-1 51752 5 96156592 NM_016442 NP_057526 C/T I276M plus 24005225 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3429 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 37766 3 KWOK C USA Caucasian (30) 60 0.2 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3430 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 37766 5 KWOK B USA African-American (30) 60 0.3 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3431 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 37766 7 KWOK A Chinese (30) 30 0.5 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3432 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 639869 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3433 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 639869 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3434 rs26653 ARTS-1 51752 5 96165006 NM_016442 NP_057526 C/G R127P plus 4920013 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.47 121 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3435 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 38844 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3436 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 38844 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3437 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 38844 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3438 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 1581079 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3439 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 3249660 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3440 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 24016101 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3441 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 24016101 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3442 rs26722 MATP 51151 5 33999627 NM_016180 NP_057264 C/T E272K plus 24016101 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 membrane associated transporter 3443 rs26740 MYO10 4651 5 16764087 NM_012334 NP_036466 C/T R700Q plus 23718135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 5p15.1-p14.3 myosin X 3444 rs26740 MYO10 4651 5 16764087 NM_012334 NP_036466 C/T R700Q plus 23718135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq,cluster" 5p15.1-p14.3 myosin X 3445 rs26740 MYO10 4651 5 16764087 NM_012334 NP_036466 C/T R700Q plus 23718135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 5p15.1-p14.3 myosin X 3446 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 40819 3 KWOK C USA Caucasian (30) 60 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3447 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 40819 5 KWOK B USA African-American (30) 60 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3448 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 40819 7 KWOK A Chinese (30) 30 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3449 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 639666 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3450 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 639666 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3451 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 3228975 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3452 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 24005051 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3453 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 24005051 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3454 rs27044 ARTS-1 51752 5 96144608 NM_016442 NP_057526 C/G Q730E plus 24005051 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3455 rs27230 ZNF434 54925 16 3374700 NM_017810 NP_060280 A/G Y120H plus 24479903 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq" 16p13.3 zinc finger protein 434 3456 rs27230 ZNF434 54925 16 3374700 NM_017810 NP_060280 A/G Y120H plus 24479903 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 16p13.3 zinc finger protein 434 3457 rs27230 ZNF434 54925 16 3374700 NM_017810 NP_060280 A/G Y120H plus 24479903 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 16p13.3 zinc finger protein 434 3458 rs27742 SULT1A2 6799 16 28510894 NM_001054 NP_001045 A/G K282E minus 2745939 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 3459 rs27742 SULT1A2 6799 16 28510894 NM_001054 NP_001045 A/G K282E minus 16341388 1166 PHARMGKB_PPII PA128747821 240 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 3460 rs27742 SULT1A2 6799 16 28510894 NM_177528 NP_803564 A/G K282E minus 2745939 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 3461 rs27742 SULT1A2 6799 16 28510894 NM_177528 NP_803564 A/G K282E minus 16341388 1166 PHARMGKB_PPII PA128747821 240 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 3462 rs27895 ARTS-1 51752 5 96155299 NM_016442 NP_057526 C/T G346D plus 2229359 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3463 rs27895 ARTS-1 51752 5 96155299 NM_016442 NP_057526 C/T G346D plus 23439230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3464 rs27895 ARTS-1 51752 5 96155299 NM_016442 NP_057526 C/T G346D plus 23439230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3465 rs27895 ARTS-1 51752 5 96155299 NM_016442 NP_057526 C/T G346D plus 23439230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3466 rs28265 ASC1p100 84164 22 28525315 NM_032204 NP_115580 C/G D407H minus 88210 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 22q12.1 ASC-1 complex subunit P100 3467 rs28265 ASC1p100 84164 22 28525315 NM_032204 NP_115580 C/G D407H minus 88210 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,doubleHit,freq,cluster" 22q12.1 ASC-1 complex subunit P100 3468 rs28265 ASC1p100 84164 22 28525315 NM_032204 NP_115580 C/G D407H minus 23625975 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 22q12.1 ASC-1 complex subunit P100 3469 rs28265 ASC1p100 84164 22 28525315 NM_032204 NP_115580 C/G D407H minus 23625975 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 22q12.1 ASC-1 complex subunit P100 3470 rs28265 ASC1p100 84164 22 28525315 NM_032204 NP_115580 C/G D407H minus 23625975 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 22q12.1 ASC-1 complex subunit P100 3471 rs28963 SPACA3 124912 17 28346804 NM_173847 NP_776246 C/T H100R minus 28490 1303 SEQUENOM CEPH CEPH (92) 92 1 102 "by submitter,cluster" 17q12 sperm acrosome associated 3 3472 rs29372 ANK2 287 4 114561613 NM_001148 NP_001139 C/T N687S minus 28973 1303 SEQUENOM CEPH CEPH (92) 92 0.06 102 "by cluster,freq" 4q25-q27 "ankyrin 2, neuronal" 3473 rs29372 ANK2 287 4 114561613 NM_020977 NP_066187 C/T N687S minus 28973 1303 SEQUENOM CEPH CEPH (92) 92 0.06 102 "by cluster,freq" 4q25-q27 "ankyrin 2, neuronal" 3474 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 1481473 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3475 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 1481473 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 68 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3476 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 1481473 640 TSC-CSHL TSC_42_A TSC Asian (42) 50 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3477 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 1481473 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3478 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 1481473 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3479 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 24418807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3480 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 24418807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3481 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 24418807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3482 rs30168 DNAH5 1767 5 13772089 NM_001369 NP_001360 A/G A4134V plus 24804807 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 3483 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 640128 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3484 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 640128 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3485 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 3215067 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.45 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3486 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 23439137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3487 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 23439137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3488 rs30187 ARTS-1 51752 5 96150086 NM_016442 NP_057526 C/T K528R plus 23439137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 3489 rs30461 IL29 282618 19 44480955 NM_172140 NP_742152 C/T N188D minus 689370 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 "interleukin 29 (interferon, lambda 1)" 3490 rs30461 IL29 282618 19 44480955 NM_172140 NP_742152 C/T N188D minus 23763490 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 "interleukin 29 (interferon, lambda 1)" 3491 rs30461 IL29 282618 19 44480955 NM_172140 NP_742152 C/T N188D minus 23763490 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 "interleukin 29 (interferon, lambda 1)" 3492 rs30461 IL29 282618 19 44480955 NM_172140 NP_742152 C/T N188D minus 23763490 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 "interleukin 29 (interferon, lambda 1)" 3493 rs30489 TCF7 6932 5 133509366 NM_201633 NP_963964 C/T G256R minus 3576863 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 3494 rs30489 TCF7 6932 5 133509366 NM_201633 NP_963964 C/T G256R minus 3576863 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,submitter,freq,cluster" 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 3495 rs30489 TCF7 6932 5 133509366 NM_201633 NP_963964 C/T G256R minus 23953339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 3496 rs30489 TCF7 6932 5 133509366 NM_201633 NP_963964 C/T G256R minus 23953339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 3497 rs30489 TCF7 6932 5 133509366 NM_201633 NP_963964 C/T G256R minus 23953339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 3498 rs30832 SLC26A2 1836 5 149341070 NM_000112 NP_000103 A/G I574T minus 1882112 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 "by submitter,freq" 5q31-q34 "solute carrier family 26 (sulfate transporter), member 2" 3499 rs30842 GOT2 2806 16 57300955 NM_002080 NP_002071 G/T V346G minus 10819561 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by cluster,freq" 16q21 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" 3500 rs30842 GOT2 2806 16 57300955 NM_002080 NP_002071 G/T V346G minus 24614222 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 16q21 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" 3501 rs30842 GOT2 2806 16 57300955 NM_002080 NP_002071 G/T V346G minus 24614222 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 16q21 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" 3502 rs30842 GOT2 2806 16 57300955 NM_002080 NP_002071 G/T V346G minus 24614222 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 16q21 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" 3503 rs31244 SV2C 22987 5 75630499 XM_043493 XP_043493 A/G D543N plus 516161 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 116 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 3504 rs31244 SV2C 22987 5 75630499 XM_043493 XP_043493 A/G D543N plus 516161 1303 SEQUENOM CEPH CEPH (92) 92 0.08 116 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 3505 rs31244 SV2C 22987 5 75630499 XM_043493 XP_043493 A/G D543N plus 3205530 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.1 116 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 3506 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 493712 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3507 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 493712 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3508 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 2988010 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3509 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 23739175 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3510 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 23739175 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3511 rs31517 LECT2 3950 5 135314928 NM_002302 NP_002293 A/G I58V minus 23739175 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31.1-q32 leukocyte cell-derived chemotaxin 2 3512 rs31726 CLG 64857 19 44606588 NM_022835 NP_073746 C/T R950K minus 721211 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3513 rs31726 CLG 64857 19 44606588 NM_022835 NP_073746 C/T R950K minus 4932100 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3514 rs31726 CLG 64857 19 44606588 NM_022835 NP_073746 C/T R950K minus 23812895 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3515 rs31726 CLG 64857 19 44606588 NM_022835 NP_073746 C/T R950K minus 23812895 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3516 rs31726 CLG 64857 19 44606588 NM_022835 NP_073746 C/T R950K minus 23812895 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3517 rs31728 CLG 64857 19 44607598 NM_022835 NP_073746 C/G P1287A minus 689619 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3518 rs31728 CLG 64857 19 44607598 NM_022835 NP_073746 C/G P1287A minus 3231929 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.47 120 "by doubleHit,freq,cluster" 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 3519 rs31738 PCDHB1 29930 5 140413374 NM_013340 NP_037472 A/G I712T minus 637454 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 5q31 protocadherin beta 1 3520 rs31738 PCDHB1 29930 5 140413374 NM_013340 NP_037472 A/G I712T minus 23675260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 5q31 protocadherin beta 1 3521 rs31738 PCDHB1 29930 5 140413374 NM_013340 NP_037472 A/G I712T minus 23675260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 5q31 protocadherin beta 1 3522 rs31738 PCDHB1 29930 5 140413374 NM_013340 NP_037472 A/G I712T minus 23675260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq,cluster" 5q31 protocadherin beta 1 3523 rs31849 PCDHB3 56132 5 140460539 NM_018937 NP_061760 C/T K41R minus 630104 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 3 3524 rs31849 PCDHB3 56132 5 140460539 NM_018937 NP_061760 C/T K41R minus 23350582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 3 3525 rs31849 PCDHB3 56132 5 140460539 NM_018937 NP_061760 C/T K41R minus 23350582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 3 3526 rs31849 PCDHB3 56132 5 140460539 NM_018937 NP_061760 C/T K41R minus 23350582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 3 3527 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 1335672 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3528 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 1335672 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3529 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 1335672 640 TSC-CSHL TSC_42_A TSC Asian (42) 62 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3530 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 1335672 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3531 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 1335672 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3532 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 4962170 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1288 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3533 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 23350563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3534 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 23350563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3535 rs31853 PCDHB2 56133 5 140454940 NM_018936 NP_061759 A/G V128I plus 23350563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 2 3536 rs32408 ODZ2 57451 5 167306766 XM_047995 XP_047995 G/T L237W plus 1982411 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 3537 rs32408 ODZ2 57451 5 167306766 XM_047995 XP_047995 G/T L237W plus 24454765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 3538 rs32408 ODZ2 57451 5 167306766 XM_047995 XP_047995 G/T L237W plus 24454765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 3539 rs32408 ODZ2 57451 5 167306766 XM_047995 XP_047995 G/T L237W plus 24454765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 3540 rs32957 FCHSD1 89848 5 141001280 NM_033449 NP_258260 A/G P681L plus 638311 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 88 by freq 5q31.3 FCH and double SH3 domains 1 3541 rs32957 FCHSD1 89848 5 141001280 NM_033449 NP_258260 A/G P681L plus 638311 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 88 by freq 5q31.3 FCH and double SH3 domains 1 3542 rs32957 FCHSD1 89848 5 141001280 NM_033449 NP_258260 A/G P681L plus 638311 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 88 by freq 5q31.3 FCH and double SH3 domains 1 3543 rs32957 FCHSD1 89848 5 141001280 NM_033449 NP_258260 A/G P681L plus 638311 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.04 88 by freq 5q31.3 FCH and double SH3 domains 1 3544 rs32957 FCHSD1 89848 5 141001280 NM_033449 NP_258260 A/G P681L plus 2146992 1303 SEQUENOM CEPH CEPH (92) 92 0.05 88 by freq 5q31.3 FCH and double SH3 domains 1 3545 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 37538 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3546 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 37538 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3547 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 37538 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3548 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 37538 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3549 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 3228912 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.1 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3550 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.12 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3551 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.1 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3552 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 776 SNP500CANCER AFR1 African / African-American (24) 46 0.04 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3553 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3554 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3555 rs34677 AMACR 23600 5 34034525 NM_014324 NP_055139 G/T Q239H minus 12675253 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3556 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 37538 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3557 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 37538 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3558 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 37538 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3559 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 37538 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3560 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 3228912 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.1 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3561 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.12 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3562 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.1 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3563 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 776 SNP500CANCER AFR1 African / African-American (24) 46 0.04 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3564 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3565 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3566 rs34677 AMACR 23600 5 34034525 NM_203382 NP_976316 G/T V186F minus 12675253 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 118 "HapMap,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 3567 rs34899 RHOBTB3 22836 5 95116957 NM_014899 NP_055714 A/G N262D plus 1788541 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "by doubleHit,submitter,freq,cluster" 5q15 Rho-related BTB domain containing 3 3568 rs35195 CDH11 1009 16 63583219 NM_001797 NP_001788 A/G T255M plus 1711242 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.31 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3569 rs35195 CDH11 1009 16 63583219 NM_001797 NP_001788 A/G T255M plus 1711242 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3570 rs35195 CDH11 1009 16 63583219 NM_001797 NP_001788 A/G T255M plus 24008248 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3571 rs35195 CDH11 1009 16 63583219 NM_001797 NP_001788 A/G T255M plus 24008248 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3572 rs35195 CDH11 1009 16 63583219 NM_001797 NP_001788 A/G T255M plus 24008248 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3573 rs35195 CDH11 1009 16 63583219 NM_033664 NP_387513 A/G T255M plus 1711242 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.31 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3574 rs35195 CDH11 1009 16 63583219 NM_033664 NP_387513 A/G T255M plus 1711242 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3575 rs35195 CDH11 1009 16 63583219 NM_033664 NP_387513 A/G T255M plus 24008248 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3576 rs35195 CDH11 1009 16 63583219 NM_033664 NP_387513 A/G T255M plus 24008248 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3577 rs35195 CDH11 1009 16 63583219 NM_033664 NP_387513 A/G T255M plus 24008248 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3578 rs35213 CDH11 1009 16 63573588 NM_001797 NP_001788 A/C S373A plus 630553 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3579 rs35213 CDH11 1009 16 63573588 NM_001797 NP_001788 A/C S373A plus 23443387 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3580 rs35213 CDH11 1009 16 63573588 NM_001797 NP_001788 A/C S373A plus 23443387 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3581 rs35213 CDH11 1009 16 63573588 NM_001797 NP_001788 A/C S373A plus 23443387 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3582 rs35213 CDH11 1009 16 63573588 NM_033664 NP_387513 A/C S373A plus 630553 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3583 rs35213 CDH11 1009 16 63573588 NM_033664 NP_387513 A/C S373A plus 23443387 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3584 rs35213 CDH11 1009 16 63573588 NM_033664 NP_387513 A/C S373A plus 23443387 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3585 rs35213 CDH11 1009 16 63573588 NM_033664 NP_387513 A/C S373A plus 23443387 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 16q22.1 "cadherin 11, type 2, OB-cadherin (osteoblast)" 3586 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 496166 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3587 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 496166 1303 SEQUENOM CEPH CEPH (92) 93 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3588 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 3229559 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3589 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 23582637 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3590 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 23582637 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3591 rs36259 LASS4 79603 19 8232904 NM_024552 NP_078828 A/G A366T plus 23582637 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 3592 rs36571 ASC1p100 84164 22 28525267 NM_032204 NP_115580 A/G P423S plus 40440 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 by freq 22q12.1 ASC-1 complex subunit P100 3593 rs36657 TMC4 147798 19 59356021 NM_144686 NP_653287 C/G Q683E minus 21521848 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq" 19q13.42 transmembrane channel-like 4 3594 rs36657 TMC4 147798 19 59356021 NM_144686 NP_653287 C/G Q683E minus 24816111 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 "HapMap,doubleHit,freq" 19q13.42 transmembrane channel-like 4 3595 rs36686 B3GNT3 10331 19 17783795 NM_014256 NP_055071 A/G R328H plus 505854 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 121 "HapMap,doubleHit,freq,cluster" 19p13.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3" 3596 rs36686 B3GNT3 10331 19 17783795 NM_014256 NP_055071 A/G R328H plus 505854 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "HapMap,doubleHit,freq,cluster" 19p13.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3" 3597 rs36686 B3GNT3 10331 19 17783795 NM_014256 NP_055071 A/G R328H plus 3196573 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.46 121 "HapMap,doubleHit,freq,cluster" 19p13.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3" 3598 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 3205030 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.36 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3599 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 14655015 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3600 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 14655015 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3601 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 23986321 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3602 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 23986321 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3603 rs37369 AGXT2 64902 5 35072872 NM_031900 NP_114106 C/T V140I plus 23986321 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,submitter,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3604 rs38794 ANKIB1 54467 7 91672690 XM_377955 XP_377955 A/C L1283M plus 43387 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 by freq 7q21.3 ankyrin repeat and IBR domain containing 1 3605 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 830808 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.21 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3606 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 830808 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3607 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 2981902 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.48 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3608 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 2981902 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.26 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3609 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 2989272 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.42 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3610 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 4323372 649 FHCRC POPU1 USA (20) 40 0.3 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3611 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 23737132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3612 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 23737132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3613 rs40401 IL3 3562 5 131424377 NM_000588 NP_000579 C/T P27S plus 23737132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 5q31.1 "interleukin 3 (colony-stimulating factor, multiple)" 3614 rs40986 FBXL3P 26223 5 135304213 NM_012159 NP_036291 A/G P51L minus 551368 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 F-box and leucine-rich repeat protein 3 pseudogene 3615 rs40986 FBXL3P 26223 5 135304213 NM_012159 NP_036291 A/G P51L minus 551368 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 F-box and leucine-rich repeat protein 3 pseudogene 3616 rs40986 FBXL3P 26223 5 135304213 NM_012159 NP_036291 A/G P51L minus 24665870 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 F-box and leucine-rich repeat protein 3 pseudogene 3617 rs40986 FBXL3P 26223 5 135304213 NM_012159 NP_036291 A/G P51L minus 24665870 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 F-box and leucine-rich repeat protein 3 pseudogene 3618 rs40986 FBXL3P 26223 5 135304213 NM_012159 NP_036291 A/G P51L minus 24665870 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 F-box and leucine-rich repeat protein 3 pseudogene 3619 rs42138 IMAA 387254 16 21438995 NM_199182 NP_954651 A/G S65G minus 7917762 1303 SEQUENOM CEPH CEPH (92) 92 0.15 120 "by cluster,freq" 16p12 hLAT1-3TM 3620 rs42524 COL1A2 1278 7 93687890 NM_000089 NP_000080 C/G P549A plus 3127654 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.24 121 "by cluster,freq" 7q22.1 "collagen, type I, alpha 2" 3621 rs42524 COL1A2 1278 7 93687890 NM_000089 NP_000080 C/G P549A plus 3127654 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.31 121 "by cluster,freq" 7q22.1 "collagen, type I, alpha 2" 3622 rs42524 COL1A2 1278 7 93687890 NM_000089 NP_000080 C/G P549A plus 3127654 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.14 121 "by cluster,freq" 7q22.1 "collagen, type I, alpha 2" 3623 rs42524 COL1A2 1278 7 93687890 NM_000089 NP_000080 C/G P549A plus 3127654 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by cluster,freq" 7q22.1 "collagen, type I, alpha 2" 3624 rs42942 PES1 23481 22 29301907 NM_014303 NP_055118 A/T T264S plus 13383550 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 by freq 22q12.1 "pescadillo homolog 1, containing BRCT domain (zebrafish)" 3625 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 91721 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3626 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 91721 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3627 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 91721 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3628 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 91721 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.15 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3629 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 91721 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3630 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 23183332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3631 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 23183332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.43 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3632 rs85276 DDX20 11218 1 112021373 NM_007204 NP_009135 C/T I762T plus 23183332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 3633 rs86312 NAGLU 4669 17 37949759 NM_000263 NP_000254 C/G R737G plus 92758 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 17q21 "N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)" 3634 rs86312 NAGLU 4669 17 37949759 NM_000263 NP_000254 C/G R737G plus 92758 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,doubleHit,freq,cluster" 17q21 "N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)" 3635 rs86312 NAGLU 4669 17 37949759 NM_000263 NP_000254 C/G R737G plus 23630363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 17q21 "N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)" 3636 rs86312 NAGLU 4669 17 37949759 NM_000263 NP_000254 C/G R737G plus 23630363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 17q21 "N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)" 3637 rs86312 NAGLU 4669 17 37949759 NM_000263 NP_000254 C/G R737G plus 23630363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 17q21 "N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)" 3638 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 97429 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3639 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 4951189 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.48 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3640 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 24209246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3641 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 24209246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3642 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 24209246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3643 rs90951 CLECSF14 10462 17 6922121 NM_006344 NP_006335 A/G C35R plus 24809010 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3644 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 97429 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3645 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 4951189 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.48 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3646 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 24209246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3647 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 24209246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3648 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 24209246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3649 rs90951 CLECSF14 10462 17 6922121 NM_182906 NP_878910 A/G C35R plus 24809010 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 "by doubleHit,freq,cluster" 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 3650 rs100803 MIZF 25988 11 118510342 NM_015517 NP_056332 A/G A493V minus 107340 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,freq,cluster" 11q23.3 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein 3651 rs100803 MIZF 25988 11 118510342 NM_015517 NP_056332 A/G A493V minus 4927339 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.28 120 "by doubleHit,freq,cluster" 11q23.3 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein 3652 rs100803 MIZF 25988 11 118510342 NM_198971 NP_945322 A/G A493V minus 107340 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,freq,cluster" 11q23.3 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein 3653 rs100803 MIZF 25988 11 118510342 NM_198971 NP_945322 A/G A493V minus 4927339 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.28 120 "by doubleHit,freq,cluster" 11q23.3 MBD2 (methyl-CpG-binding protein)-interacting zinc finger protein 3654 rs103612 NUP214 8021 9 131049646 NM_005085 NP_005076 C/T P574S plus 110164 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,freq,cluster" 9q34.1 nucleoporin 214kDa 3655 rs103612 NUP214 8021 9 131049646 NM_005085 NP_005076 C/T P574S plus 110164 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,freq,cluster" 9q34.1 nucleoporin 214kDa 3656 rs103612 NUP214 8021 9 131049646 NM_005085 NP_005076 C/T P574S plus 24555978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 9q34.1 nucleoporin 214kDa 3657 rs103612 NUP214 8021 9 131049646 NM_005085 NP_005076 C/T P574S plus 24555978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 9q34.1 nucleoporin 214kDa 3658 rs103612 NUP214 8021 9 131049646 NM_005085 NP_005076 C/T P574S plus 24555978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 9q34.1 nucleoporin 214kDa 3659 rs106287 SKIV2L 6499 6 32043729 NM_006929 NP_008860 C/T V917M minus 1466178 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 3660 rs106287 SKIV2L 6499 6 32043729 NM_006929 NP_008860 C/T V917M minus 24796286 1303 SEQUENOM CEPH CEPH (92) 184 0.2 123 "by cluster,freq" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 3661 rs123509 KBTBD5 131377 3 42708472 NM_152393 NP_689606 A/G C617R minus 131062 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.27 123 "HapMap,submitter,freq,cluster" 3p21.33 kelch repeat and BTB (POZ) domain containing 5 3662 rs123509 KBTBD5 131377 3 42708472 NM_152393 NP_689606 A/G C617R minus 131062 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "HapMap,submitter,freq,cluster" 3p21.33 kelch repeat and BTB (POZ) domain containing 5 3663 rs123509 KBTBD5 131377 3 42708472 NM_152393 NP_689606 A/G C617R minus 24325075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 3p21.33 kelch repeat and BTB (POZ) domain containing 5 3664 rs123509 KBTBD5 131377 3 42708472 NM_152393 NP_689606 A/G C617R minus 24325075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 3p21.33 kelch repeat and BTB (POZ) domain containing 5 3665 rs123509 KBTBD5 131377 3 42708472 NM_152393 NP_689606 A/G C617R minus 24325075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 3p21.33 kelch repeat and BTB (POZ) domain containing 5 3666 rs125555 MBD1 4152 18 46054177 NM_002384 NP_002375 C/G P345A minus 133108 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.25 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3667 rs125555 MBD1 4152 18 46054177 NM_002384 NP_002375 C/G P345A minus 133108 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.2 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3668 rs125555 MBD1 4152 18 46054177 NM_002384 NP_002375 C/G P345A minus 149187 524 LDN AUTISM USA (autistic probands) 20 0.05 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3669 rs125555 MBD1 4152 18 46054177 NM_002384 NP_002375 C/G P345A minus 149187 1303 SEQUENOM CEPH CEPH (92) 92 0.47 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3670 rs125555 MBD1 4152 18 46054177 NM_015844 NP_056669 C/G P345A minus 133108 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.25 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3671 rs125555 MBD1 4152 18 46054177 NM_015844 NP_056669 C/G P345A minus 133108 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.2 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3672 rs125555 MBD1 4152 18 46054177 NM_015844 NP_056669 C/G P345A minus 149187 524 LDN AUTISM USA (autistic probands) 20 0.05 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3673 rs125555 MBD1 4152 18 46054177 NM_015844 NP_056669 C/G P345A minus 149187 1303 SEQUENOM CEPH CEPH (92) 92 0.47 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3674 rs125555 MBD1 4152 18 46054177 NM_015846 NP_056671 C/G P401A minus 133108 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.25 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3675 rs125555 MBD1 4152 18 46054177 NM_015846 NP_056671 C/G P401A minus 133108 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.2 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3676 rs125555 MBD1 4152 18 46054177 NM_015846 NP_056671 C/G P401A minus 149187 524 LDN AUTISM USA (autistic probands) 20 0.05 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3677 rs125555 MBD1 4152 18 46054177 NM_015846 NP_056671 C/G P401A minus 149187 1303 SEQUENOM CEPH CEPH (92) 92 0.47 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3678 rs125555 MBD1 4152 18 46054177 NM_015847 NP_056723 C/G P352A minus 133108 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.25 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3679 rs125555 MBD1 4152 18 46054177 NM_015847 NP_056723 C/G P352A minus 133108 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.2 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3680 rs125555 MBD1 4152 18 46054177 NM_015847 NP_056723 C/G P352A minus 149187 524 LDN AUTISM USA (autistic probands) 20 0.05 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3681 rs125555 MBD1 4152 18 46054177 NM_015847 NP_056723 C/G P352A minus 149187 1303 SEQUENOM CEPH CEPH (92) 92 0.47 120 "by cluster,freq" 18q21 methyl-CpG binding domain protein 1 3682 rs129415 SCUBE1 80274 22 41947893 NM_173050 NP_766638 C/G G398R plus 2985439 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.48 123 "by doubleHit,freq,cluster" 22q13 "signal peptide, CUB domain, EGF-like 1" 3683 rs129415 SCUBE1 80274 22 41947893 NM_173050 NP_766638 C/G G398R plus 24091239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.2 123 "by doubleHit,freq,cluster" 22q13 "signal peptide, CUB domain, EGF-like 1" 3684 rs129415 SCUBE1 80274 22 41947893 NM_173050 NP_766638 C/G G398R plus 24091239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 22q13 "signal peptide, CUB domain, EGF-like 1" 3685 rs129415 SCUBE1 80274 22 41947893 NM_173050 NP_766638 C/G G398R plus 24091239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by doubleHit,freq,cluster" 22q13 "signal peptide, CUB domain, EGF-like 1" 3686 rs130063 HTR1B 3351 6 78228741 NM_000863 NP_000854 A/G I367V minus 137623 538 SGRP HTR1B-POOL 1820 0 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3687 rs130063 HTR1B 3351 6 78228741 NM_000863 NP_000854 A/G I367V minus 137623 539 SGRP SCHIZOPHRENIA_LD_SAMPLE Predominantly European-American and African-American (schizophrenia and schizoaffective disorder) 1660 0 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3688 rs130063 HTR1B 3351 6 78228741 NM_000863 NP_000854 A/G I367V minus 137623 540 SGRP ETHNIC_DIVERSITY_SAMPLE Mixed 160 1 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3689 rs130063 HTR1B 3351 6 78228741 NM_000863 NP_000854 A/G I367V minus 137623 1303 SEQUENOM CEPH CEPH (92) 92 1 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3690 rs130064 HTR1B 3351 6 78228720 NM_000863 NP_000854 A/G E374K minus 137624 538 SGRP HTR1B-POOL 1820 0 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3691 rs130064 HTR1B 3351 6 78228720 NM_000863 NP_000854 A/G E374K minus 137624 539 SGRP SCHIZOPHRENIA_LD_SAMPLE Predominantly European-American and African-American (schizophrenia and schizoaffective disorder) 1660 0 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3692 rs130064 HTR1B 3351 6 78228720 NM_000863 NP_000854 A/G E374K minus 137624 540 SGRP ETHNIC_DIVERSITY_SAMPLE Mixed 160 1 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3693 rs130064 HTR1B 3351 6 78228720 NM_000863 NP_000854 A/G E374K minus 137624 1303 SEQUENOM CEPH CEPH (92) 92 1 78 by freq 6q13 5-hydroxytryptamine (serotonin) receptor 1B 3694 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 52 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3695 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 58 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3696 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 56 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3697 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3698 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3699 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 1465169 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3700 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 23644163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3701 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 23644163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3702 rs132653 APOL3 80833 22 34881323 NM_145640 NP_663615 A/C S39R minus 23644163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 3" 3703 rs133072 GPR24 2847 22 39400043 NM_005297 NP_005288 A/G N32D plus 8009757 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,freq,cluster" 22q13.2 G protein-coupled receptor 24 3704 rs133885 MYO18B 84700 22 24483843 NM_032608 NP_115997 A/G G44E plus 24581329 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 "by doubleHit,freq" 22q11.2-q12.1 myosin XVIIIB 3705 rs133885 MYO18B 84700 22 24483843 NM_032608 NP_115997 A/G G44E plus 24581329 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 22q11.2-q12.1 myosin XVIIIB 3706 rs133885 MYO18B 84700 22 24483843 NM_032608 NP_115997 A/G G44E plus 24581329 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 22q11.2-q12.1 myosin XVIIIB 3707 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 3195162 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3708 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 7997337 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3709 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 7997337 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3710 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 24599289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3711 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 24599289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3712 rs136175 APOL1 8542 22 34986066 NM_003661 NP_003652 A/G M228I plus 24599289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3713 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 3195162 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3714 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 7997337 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3715 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 7997337 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3716 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 24599289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3717 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 24599289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3718 rs136175 APOL1 8542 22 34986066 NM_145343 NP_663318 A/G M244I plus 24599289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3719 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 3195162 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3720 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 7997337 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3721 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 7997337 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3722 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 24599289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3723 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 24599289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3724 rs136175 APOL1 8542 22 34986066 NM_145344 NP_663319 A/G M228I plus 24599289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3725 rs136176 APOL1 8542 22 34986146 NM_003661 NP_003652 A/G R255K plus 3195163 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.19 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3726 rs136176 APOL1 8542 22 34986146 NM_003661 NP_003652 A/G R255K plus 8006792 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3727 rs136176 APOL1 8542 22 34986146 NM_003661 NP_003652 A/G R255K plus 24599292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3728 rs136176 APOL1 8542 22 34986146 NM_003661 NP_003652 A/G R255K plus 24599292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3729 rs136176 APOL1 8542 22 34986146 NM_003661 NP_003652 A/G R255K plus 24599292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3730 rs136176 APOL1 8542 22 34986146 NM_145343 NP_663318 A/G R271K plus 3195163 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.19 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3731 rs136176 APOL1 8542 22 34986146 NM_145343 NP_663318 A/G R271K plus 8006792 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3732 rs136176 APOL1 8542 22 34986146 NM_145343 NP_663318 A/G R271K plus 24599292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3733 rs136176 APOL1 8542 22 34986146 NM_145343 NP_663318 A/G R271K plus 24599292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3734 rs136176 APOL1 8542 22 34986146 NM_145343 NP_663318 A/G R271K plus 24599292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3735 rs136176 APOL1 8542 22 34986146 NM_145344 NP_663319 A/G R255K plus 3195163 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.19 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3736 rs136176 APOL1 8542 22 34986146 NM_145344 NP_663319 A/G R255K plus 8006792 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3737 rs136176 APOL1 8542 22 34986146 NM_145344 NP_663319 A/G R255K plus 24599292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3738 rs136176 APOL1 8542 22 34986146 NM_145344 NP_663319 A/G R255K plus 24599292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3739 rs136176 APOL1 8542 22 34986146 NM_145344 NP_663319 A/G R255K plus 24599292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 3740 rs136467 RFPL2 10739 22 30911408 NM_006605 NP_006596 C/T V258I plus 8288357 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,freq,cluster" 22q12.3 ret finger protein-like 2 3741 rs136468 RFPL2 10739 22 30911429 NM_006605 NP_006596 A/G R251C plus 8293330 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,cluster" 22q12.3 ret finger protein-like 2 3742 rs136470 RFPL2 10739 22 30911480 NM_006605 NP_006596 C/T S234G plus 8293332 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "by doubleHit,freq,cluster" 22q12.3 ret finger protein-like 2 3743 rs136478 RFPL2 10739 22 30913577 NM_006605 NP_006596 C/T C51Y plus 144631 1303 SEQUENOM CEPH CEPH (92) 92 0.45 119 "by doubleHit,freq,cluster" 22q12.3 ret finger protein-like 2 3744 rs136853 CACNA1I 8911 22 38382686 NM_021096 NP_066919 A/G I1040V plus 8009386 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by cluster,freq" 22q13.1 "calcium channel, voltage-dependent, alpha 1I subunit" 3745 rs137203 SEZ6L 23544 22 25013385 NM_021115 NP_066938 G/T W185L plus 145466 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 3746 rs137203 SEZ6L 23544 22 25013385 NM_021115 NP_066938 G/T W185L plus 145466 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 3747 rs137203 SEZ6L 23544 22 25013385 NM_021115 NP_066938 G/T W185L plus 23560703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "HapMap,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 3748 rs137203 SEZ6L 23544 22 25013385 NM_021115 NP_066938 G/T W185L plus 23560703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 3749 rs137203 SEZ6L 23544 22 25013385 NM_021115 NP_066938 G/T W185L plus 23560703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 3750 rs138993 SCUBE1 80274 22 41934705 NM_173050 NP_766638 A/G S648P plus 2985436 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.09 121 "by doubleHit,cluster" 22q13 "signal peptide, CUB domain, EGF-like 1" 3751 rs139297 ARP10 164668 22 37821904 NM_181773 NP_861438 C/G G105R plus 21854414 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq" 22q13.1 ARP10 protein 3752 rs139298 ARP10 164668 22 37821952 NM_181773 NP_861438 A/G K121E plus 21852780 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq" 22q13.1 ARP10 protein 3753 rs139299 ARP10 164668 22 37821954 NM_181773 NP_861438 C/G K121N plus 21855284 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by doubleHit,freq" 22q13.1 ARP10 protein 3754 rs139300 ARP10 164668 22 37822009 NM_181773 NP_861438 A/G K140E plus 8008945 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 by freq 22q13.1 ARP10 protein 3755 rs139302 ARP10 164668 22 37822538 NM_181773 NP_861438 C/G E178D plus 8289843 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "by doubleHit,freq" 22q13.1 ARP10 protein 3756 rs140054 GTSE1 51512 22 45042919 NM_016426 NP_057510 A/G W506R minus 8021617 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,submitter,freq,cluster" 22q13.2-q13.3 G-2 and S-phase expressed 1 3757 rs140054 GTSE1 51512 22 45042919 NM_016426 NP_057510 A/G W506R minus 8021617 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "HapMap,submitter,freq,cluster" 22q13.2-q13.3 G-2 and S-phase expressed 1 3758 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 2068045 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3759 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 2068045 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3760 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 3172556 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.06 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3761 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 3224984 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.49 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3762 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 24095624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3763 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 24095624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3764 rs140504 BCR 613 22 21951923 NM_004327 NP_004318 A/G N796S plus 24095624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3765 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 2068045 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3766 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 2068045 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3767 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 3172556 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.06 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3768 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 3224984 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.49 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3769 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 24095624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3770 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 24095624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3771 rs140504 BCR 613 22 21951923 NM_021574 NP_067585 A/G N796S plus 24095624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 22q11.23 breakpoint cluster region 3772 rs140523 SCO2 9997 22 49252926 NM_005138 NP_005129 C/G R20P minus 149017 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 116 "HapMap,doubleHit,freq,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 3773 rs140523 SCO2 9997 22 49252926 NM_005138 NP_005129 C/G R20P minus 149017 1303 SEQUENOM CEPH CEPH (92) 92 0.16 116 "HapMap,doubleHit,freq,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 3774 rs140598 FBN1 2200 15 46566822 NM_000138 NP_000129 C/G P1148A minus 149095 527 OEFNER AUTOSOME Stanford Autosome Collection 17 0.5 102 by freq 15q21.1 fibrillin 1 (Marfan syndrome) 3775 rs140598 FBN1 2200 15 46566822 NM_000138 NP_000129 C/G P1148A minus 3176334 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.08 102 by freq 15q21.1 fibrillin 1 (Marfan syndrome) 3776 rs140599 FBN1 2200 15 46566806 NM_000138 NP_000129 A/G C1153Y minus 149096 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 78 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3777 rs140638 FBN1 2200 15 46554082 NM_000138 NP_000129 A/G N1341S minus 149135 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 78 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3778 rs140638 FBN1 2200 15 46554082 NM_000138 NP_000129 A/G N1341S minus 149135 1303 SEQUENOM CEPH CEPH (92) 92 1 78 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 3779 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 149192 524 LDN AUTISM USA (autistic probands) 24 0.09 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3780 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 149192 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3781 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 3255099 506 NCBI NIHPDR NIHPDR 872 0.08 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3782 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 4385591 693 EGP_SNPS PDR90 NIHPDR 178 0.07 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3783 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 23909871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3784 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 23909871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3785 rs140693 MBD4 8930 3 130638149 NM_003925 NP_003916 A/G E346K minus 23909871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by submitter,freq,cluster" 3q21-q22 methyl-CpG binding domain protein 4 3786 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 153384 902 AFFY Caucasian 14 0.29 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3787 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 153384 903 AFFY Asian 2 0.5 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3788 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 153384 904 AFFY CEPH 12 0.42 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3789 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 153384 905 AFFY PDpanel 46 0.24 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3790 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 153384 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3791 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 887467 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3792 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 887467 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3793 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 887467 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3794 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 887467 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 176 0.38 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3795 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 3172559 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.23 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3796 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 5586305 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.29 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3797 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 5586305 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.28 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3798 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 5586305 776 SNP500CANCER AFR1 African / African-American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3799 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 5586305 777 SNP500CANCER HISP1 Hispanic (23) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3800 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 5586305 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3801 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 16355781 693 EGP_SNPS PDR90 NIHPDR 180 0.26 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3802 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 24664348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3803 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 24664348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3804 rs144848 BRCA2 675 13 31804729 NM_000059 NP_000050 G/T N372H minus 24664348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by doubleHit,submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3805 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 3237077 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3806 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 4063916 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3807 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 4063916 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3808 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 23624334 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3809 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 23624334 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3810 rs150857 CARKL 23729 17 3473386 NM_013276 NP_037408 C/T E215K plus 23624334 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 carbohydrate kinase-like 3811 rs153477 GM2A 2760 5 150619602 NM_000405 NP_000396 A/G I59V plus 1428295 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,submitter,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3812 rs153477 GM2A 2760 5 150619602 NM_000405 NP_000396 A/G I59V plus 3213722 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.32 123 "by doubleHit,submitter,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3813 rs153477 GM2A 2760 5 150619602 NM_000405 NP_000396 A/G I59V plus 23766710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3814 rs153477 GM2A 2760 5 150619602 NM_000405 NP_000396 A/G I59V plus 23766710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3815 rs153477 GM2A 2760 5 150619602 NM_000405 NP_000396 A/G I59V plus 23766710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3816 rs153478 GM2A 2760 5 150619632 NM_000405 NP_000396 A/G M69V plus 1428296 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3817 rs153478 GM2A 2760 5 150619632 NM_000405 NP_000396 A/G M69V plus 24686202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.3 123 "by doubleHit,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3818 rs153478 GM2A 2760 5 150619632 NM_000405 NP_000396 A/G M69V plus 24686202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 "by doubleHit,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3819 rs153478 GM2A 2760 5 150619632 NM_000405 NP_000396 A/G M69V plus 24686202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 3820 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 582726 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3821 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 582726 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.27 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3822 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 582726 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3823 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 582726 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.36 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3824 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 3255093 506 NCBI NIHPDR NIHPDR 82 0.38 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3825 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 4931759 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.1 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3826 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 5229529 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3827 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 16316168 693 EGP_SNPS PDR90 NIHPDR 166 0.39 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3828 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 24531552 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3829 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 24531552 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3830 rs156631 PLA2G4C 8605 19 53290635 NM_003706 NP_003697 C/T S203P minus 24531552 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 3831 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 773736 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3832 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 773736 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3833 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 3241600 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3834 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 16334038 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3835 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 16334038 902 AFFY Caucasian 18 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3836 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 16334038 903 AFFY Asian 4 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3837 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 16334038 904 AFFY CEPH 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3838 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 16334038 905 AFFY PDpanel 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3839 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 24503173 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3840 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 24503173 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3841 rs156697 GSTO2 119391 10 106029175 NM_183239 NP_899062 C/T N142D minus 24503173 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 glutathione S-transferase omega 2 3842 rs157024 MYR8 23026 13 108575504 XM_028522 XP_028522 A/G I1469M plus 464363 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq" 13q33.3 myosin heavy chain Myr 8 3843 rs157024 MYR8 23026 13 108575504 XM_028522 XP_028522 A/G I1469M plus 24549423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 13q33.3 myosin heavy chain Myr 8 3844 rs157024 MYR8 23026 13 108575504 XM_028522 XP_028522 A/G I1469M plus 24549423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq" 13q33.3 myosin heavy chain Myr 8 3845 rs157024 MYR8 23026 13 108575504 XM_028522 XP_028522 A/G I1469M plus 24549423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq" 13q33.3 myosin heavy chain Myr 8 3846 rs157496 PDZK3 23037 5 32123131 NM_178140 NP_835260 A/G T1274A plus 698075 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 PDZ domain containing 3 3847 rs157496 PDZK3 23037 5 32123131 NM_178140 NP_835260 A/G T1274A plus 698075 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 PDZ domain containing 3 3848 rs157496 PDZK3 23037 5 32123131 NM_178140 NP_835260 A/G T1274A plus 24009438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 PDZ domain containing 3 3849 rs157496 PDZK3 23037 5 32123131 NM_178140 NP_835260 A/G T1274A plus 24009438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 PDZ domain containing 3 3850 rs157496 PDZK3 23037 5 32123131 NM_178140 NP_835260 A/G T1274A plus 24009438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.3 PDZ domain containing 3 3851 rs158551 BCAS1 8537 20 52078573 NM_003657 NP_003648 C/T V163A minus 614289 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 3852 rs158551 BCAS1 8537 20 52078573 NM_003657 NP_003648 C/T V163A minus 24095060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 3853 rs158551 BCAS1 8537 20 52078573 NM_003657 NP_003648 C/T V163A minus 24095060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 3854 rs158551 BCAS1 8537 20 52078573 NM_003657 NP_003648 C/T V163A minus 24095060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 3855 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 666549 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3856 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 666549 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3857 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 666549 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3858 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 666549 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.34 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3859 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 666549 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3860 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 4920089 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.46 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3861 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 23674326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3862 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 23674326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3863 rs160277 CSPG2 1462 5 82873387 NM_004385 NP_004376 A/C D2937Y minus 23674326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3864 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 739666 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.33 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3865 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 739666 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3866 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 739666 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.47 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3867 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 1295190 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3868 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 4920091 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.48 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3869 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 23674325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3870 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 23674325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3871 rs160278 CSPG2 1462 5 82871480 NM_004385 NP_004376 A/T F2301Y minus 23674325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 3872 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 540235 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.4 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3873 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 540235 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3874 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 3228863 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.48 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3875 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 16335693 901 AFFY AfAm 5 0.5 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3876 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 16335693 902 AFFY Caucasian 22 0.45 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3877 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 16335693 903 AFFY Asian 10 0.4 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3878 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 16335693 904 AFFY CEPH 10 0.4 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3879 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 16335693 905 AFFY PDpanel 46 0.3 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3880 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 24381674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3881 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 24381674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.45 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3882 rs160632 RIOK2 55781 5 96529279 NM_018343 NP_060813 A/G G349R minus 24381674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 5q15 RIO kinase 2 (yeast) 3883 rs160838 RGL3 57139 19 11387759 XM_290867 XP_290867 C/T A164V minus 1873156 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq,cluster" 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 3884 rs161400 CTNS 1497 17 3508145 NM_004937 NP_004928 C/T T260I plus 620031 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 "by doubleHit,freq,cluster" 17p13 "cystinosis, nephropathic" 3885 rs161557 HB-1 57824 5 143180246 NM_021182 NP_067005 C/T H16Y plus 23920417 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by submitter,freq,cluster" 5q32 minor histocompatibility antigen HB-1 3886 rs161557 HB-1 57824 5 143180246 NM_021182 NP_067005 C/T H16Y plus 23920417 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by submitter,freq,cluster" 5q32 minor histocompatibility antigen HB-1 3887 rs161557 HB-1 57824 5 143180246 NM_021182 NP_067005 C/T H16Y plus 23920417 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "by submitter,freq,cluster" 5q32 minor histocompatibility antigen HB-1 3888 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 1991445 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.42 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3889 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 1991445 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.22 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3890 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 1991445 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.19 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3891 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 1991445 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3892 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 23352578 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3893 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 23352578 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3894 rs161704 IL31RA 133396 5 55242201 NM_139017 NP_620586 C/T S497N minus 23352578 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 5q11.2 interleukin 31 receptor A 3895 rs161931 ZNF578 147660 19 57706158 NM_152472 NP_689685 C/T E13K minus 734787 901 AFFY AfAm 12 1 121 "by doubleHit,freq" 19q13.41 zinc finger protein 578 3896 rs161931 ZNF578 147660 19 57706158 NM_152472 NP_689685 C/T E13K minus 734787 902 AFFY Caucasian 20 1 121 "by doubleHit,freq" 19q13.41 zinc finger protein 578 3897 rs161931 ZNF578 147660 19 57706158 NM_152472 NP_689685 C/T E13K minus 734787 903 AFFY Asian 12 1 121 "by doubleHit,freq" 19q13.41 zinc finger protein 578 3898 rs161931 ZNF578 147660 19 57706158 NM_152472 NP_689685 C/T E13K minus 734787 904 AFFY CEPH 12 1 121 "by doubleHit,freq" 19q13.41 zinc finger protein 578 3899 rs161931 ZNF578 147660 19 57706158 NM_152472 NP_689685 C/T E13K minus 734787 905 AFFY PDpanel 44 0.05 121 "by doubleHit,freq" 19q13.41 zinc finger protein 578 3900 rs162036 MTRR 4552 5 7938959 NM_002454 NP_002445 A/G K350R plus 612812 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3901 rs162036 MTRR 4552 5 7938959 NM_002454 NP_002445 A/G K350R plus 23260951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3902 rs162036 MTRR 4552 5 7938959 NM_002454 NP_002445 A/G K350R plus 23260951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3903 rs162036 MTRR 4552 5 7938959 NM_002454 NP_002445 A/G K350R plus 23260951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3904 rs162036 MTRR 4552 5 7938959 NM_024010 NP_076915 A/G K377R plus 612812 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3905 rs162036 MTRR 4552 5 7938959 NM_024010 NP_076915 A/G K377R plus 23260951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3906 rs162036 MTRR 4552 5 7938959 NM_024010 NP_076915 A/G K377R plus 23260951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3907 rs162036 MTRR 4552 5 7938959 NM_024010 NP_076915 A/G K377R plus 23260951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 3908 rs164075 PCDH12 51294 5 141316448 NM_016580 NP_057664 A/C H385N minus 849396 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by submitter,freq,cluster" 5q31 protocadherin 12 3909 rs164075 PCDH12 51294 5 141316448 NM_016580 NP_057664 A/C H385N minus 4933744 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.14 123 "by submitter,freq,cluster" 5q31 protocadherin 12 3910 rs164075 PCDH12 51294 5 141316448 NM_016580 NP_057664 A/C H385N minus 24667595 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by submitter,freq,cluster" 5q31 protocadherin 12 3911 rs164075 PCDH12 51294 5 141316448 NM_016580 NP_057664 A/C H385N minus 24667595 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 5q31 protocadherin 12 3912 rs164075 PCDH12 51294 5 141316448 NM_016580 NP_057664 A/C H385N minus 24667595 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 5q31 protocadherin 12 3913 rs164515 PCDH12 51294 5 141315682 NM_016580 NP_057664 A/G S640N minus 4933743 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.12 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin 12 3914 rs164515 PCDH12 51294 5 141315682 NM_016580 NP_057664 A/G S640N minus 24621926 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin 12 3915 rs164515 PCDH12 51294 5 141315682 NM_016580 NP_057664 A/G S640N minus 24621926 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin 12 3916 rs164515 PCDH12 51294 5 141315682 NM_016580 NP_057664 A/G S640N minus 24621926 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin 12 3917 rs165602 NEFH 4744 22 28210597 NM_021076 NP_066554 A/C E805A plus 8001752 1303 SEQUENOM CEPH CEPH (92) 92 0.18 114 "by doubleHit,submitter,freq" 22q12.2 "neurofilament, heavy polypeptide 200kDa" 3918 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 481084 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.46 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3919 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 481084 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.46 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3920 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 481084 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3921 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 481084 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.12 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3922 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 8287556 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3923 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 8287556 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3924 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 23789050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3925 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 23789050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3926 rs165815 ARVCF 421 22 18334027 NM_001670 NP_001661 C/T R906Q plus 23789050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 3927 rs167479 RGL3 57139 19 11387765 XM_290867 XP_290867 A/C P162H minus 1937759 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq,cluster" 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 3928 rs167479 RGL3 57139 19 11387765 XM_290867 XP_290867 A/C P162H minus 1937780 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 121 "by doubleHit,freq,cluster" 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 3929 rs167479 RGL3 57139 19 11387765 XM_290867 XP_290867 A/C P162H minus 1937780 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 121 "by doubleHit,freq,cluster" 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 3930 rs167479 RGL3 57139 19 11387765 XM_290867 XP_290867 A/C P162H minus 1937780 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 121 "by doubleHit,freq,cluster" 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 3931 rs168107 MCLC 23155 1 109192020 NM_015127 NP_055942 G/T S318R plus 3252203 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.03 123 "by doubleHit,submitter,freq,cluster" 1p13.3 Mid-1-related chloride channel 1 3932 rs168107 MCLC 23155 1 109192020 NM_015127 NP_055942 G/T S318R plus 24271944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.45 123 "by doubleHit,submitter,freq,cluster" 1p13.3 Mid-1-related chloride channel 1 3933 rs168107 MCLC 23155 1 109192020 NM_015127 NP_055942 G/T S318R plus 24271944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,submitter,freq,cluster" 1p13.3 Mid-1-related chloride channel 1 3934 rs168107 MCLC 23155 1 109192020 NM_015127 NP_055942 G/T S318R plus 24271944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 1p13.3 Mid-1-related chloride channel 1 3935 rs168107 MCLC 23155 1 109192020 NM_015127 NP_055942 G/T S318R plus 24796096 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 "by doubleHit,submitter,freq,cluster" 1p13.3 Mid-1-related chloride channel 1 3936 rs169068 SSTR5 6755 16 1069873 NM_001053 NP_001044 C/T P335L plus 2987167 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.16 113 "by doubleHit,freq,cluster" 16p13.3 somatostatin receptor 5 3937 rs169068 SSTR5 6755 16 1069873 NM_001053 NP_001044 C/T P335L plus 3173187 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.39 113 "by doubleHit,freq,cluster" 16p13.3 somatostatin receptor 5 3938 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 5586320 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3939 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 5586320 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3940 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 5586320 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3941 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 5586320 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3942 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 5586320 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3943 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 16355878 693 EGP_SNPS PDR90 NIHPDR 148 0.03 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3944 rs169547 BRCA2 675 13 31827387 NM_000059 NP_000050 A/G V2466A minus 16355878 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 121 "HapMap,freq,cluster" 13q12.3 "breast cancer 2, early onset" 3945 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 88 by freq 21p11 transmembrane phosphatase with tensin homology 3946 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3947 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3948 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 96 0.26 88 by freq 21p11 transmembrane phosphatase with tensin homology 3949 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 82 0.06 88 by freq 21p11 transmembrane phosphatase with tensin homology 3950 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 114 0.19 88 by freq 21p11 transmembrane phosphatase with tensin homology 3951 rs169758 TPTE 7179 21 9928786 NM_013315 NP_037447 A/G G549E minus 2339892 1303 SEQUENOM CEPH CEPH (92) 92 0.01 88 by freq 21p11 transmembrane phosphatase with tensin homology 3952 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 88 by freq 21p11 transmembrane phosphatase with tensin homology 3953 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3954 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3955 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 96 0.26 88 by freq 21p11 transmembrane phosphatase with tensin homology 3956 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 82 0.06 88 by freq 21p11 transmembrane phosphatase with tensin homology 3957 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 114 0.19 88 by freq 21p11 transmembrane phosphatase with tensin homology 3958 rs169758 TPTE 7179 21 9928786 NM_199259 NP_954868 A/G G531E minus 2339892 1303 SEQUENOM CEPH CEPH (92) 92 0.01 88 by freq 21p11 transmembrane phosphatase with tensin homology 3959 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 88 by freq 21p11 transmembrane phosphatase with tensin homology 3960 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3961 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3962 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 96 0.26 88 by freq 21p11 transmembrane phosphatase with tensin homology 3963 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 82 0.06 88 by freq 21p11 transmembrane phosphatase with tensin homology 3964 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 114 0.19 88 by freq 21p11 transmembrane phosphatase with tensin homology 3965 rs169758 TPTE 7179 21 9928786 NM_199260 NP_954869 A/G G511E minus 2339892 1303 SEQUENOM CEPH CEPH (92) 92 0.01 88 by freq 21p11 transmembrane phosphatase with tensin homology 3966 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 88 by freq 21p11 transmembrane phosphatase with tensin homology 3967 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3968 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 by freq 21p11 transmembrane phosphatase with tensin homology 3969 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 96 0.26 88 by freq 21p11 transmembrane phosphatase with tensin homology 3970 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 82 0.06 88 by freq 21p11 transmembrane phosphatase with tensin homology 3971 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 770 TSC-CSHL WICGR5_NIGERIAN WICGR Nigerian (96) 114 0.19 88 by freq 21p11 transmembrane phosphatase with tensin homology 3972 rs169758 TPTE 7179 21 9928786 NM_199261 NP_954870 A/G G411E minus 2339892 1303 SEQUENOM CEPH CEPH (92) 92 0.01 88 by freq 21p11 transmembrane phosphatase with tensin homology 3973 rs170758 F25965 55957 19 40934929 NM_019104 NP_061977 C/T V16A plus 10933493 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19q13.1 protein F25965 3974 rs170758 F25965 55957 19 40934929 NM_019104 NP_061977 C/T V16A plus 10933493 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 19q13.1 protein F25965 3975 rs172562 TBX18 9096 6 85530477 XM_496819 XP_496819 C/T G48R plus 1746987 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "by doubleHit,freq,cluster" 6q14-q15 T-box 18 3976 rs175916 BDP1 55814 5 70873180 NM_018429 NP_060899 C/T E2056K minus 476956 1303 SEQUENOM CEPH CEPH (92) 92 1 87 by freq 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 3977 rs175916 BDP1 55814 5 70873180 NM_018429 NP_060899 C/T E2056K minus 1276603 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 87 by freq 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 3978 rs175916 BDP1 55814 5 70873180 NM_018429 NP_060899 C/T E2056K minus 1276603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 87 by freq 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 3979 rs175916 BDP1 55814 5 70873180 NM_018429 NP_060899 C/T E2056K minus 1276603 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 87 by freq 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 3980 rs176250 BRD2 6046 6 33052106 NM_005104 NP_005095 A/G L238F minus 824728 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 6p21.3 bromodomain containing 2 3981 rs176250 BRD2 6046 6 33052106 NM_005104 NP_005095 A/G L238F minus 4479315 719 CGC ctrSW 122 0.02 121 "by cluster,freq" 6p21.3 bromodomain containing 2 3982 rs177386 PAPLN 89932 14 72799251 XM_370765 XP_370765 A/G G1112R plus 1722291 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 3983 rs177386 PAPLN 89932 14 72799251 XM_370765 XP_370765 A/G G1112R plus 23654029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 3984 rs177386 PAPLN 89932 14 72799251 XM_370765 XP_370765 A/G G1112R plus 23654029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 3985 rs177386 PAPLN 89932 14 72799251 XM_370765 XP_370765 A/G G1112R plus 23654029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 3986 rs179196 UNQ5810 388218 16 19204720 NM_207384 NP_997267 G/T S16A plus 1853266 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 100 "HapMap,submitter,freq" 16p13.11 QRWT5810 3987 rs179196 UNQ5810 388218 16 19204720 NM_207384 NP_997267 G/T S16A plus 1853266 1303 SEQUENOM CEPH CEPH (92) 92 0.03 100 "HapMap,submitter,freq" 16p13.11 QRWT5810 3988 rs180749 AGXT2 64902 5 35069362 NM_031900 NP_114106 A/G T212I plus 626437 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by doubleHit,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3989 rs180749 AGXT2 64902 5 35069362 NM_031900 NP_114106 A/G T212I plus 3234086 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.2 123 "by doubleHit,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3990 rs180749 AGXT2 64902 5 35069362 NM_031900 NP_114106 A/G T212I plus 23986266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3991 rs180749 AGXT2 64902 5 35069362 NM_031900 NP_114106 A/G T212I plus 23986266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3992 rs180749 AGXT2 64902 5 35069362 NM_031900 NP_114106 A/G T212I plus 23986266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 5p13 alanine-glyoxylate aminotransferase 2 3993 rs181206 IL27 246778 16 28420904 NM_145659 NP_663634 C/T L119P minus 617395 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 87 by freq 16p11 interleukin 27 3994 rs181206 IL27 246778 16 28420904 NM_145659 NP_663634 C/T L119P minus 617395 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 87 by freq 16p11 interleukin 27 3995 rs181206 IL27 246778 16 28420904 NM_145659 NP_663634 C/T L119P minus 617395 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 87 by freq 16p11 interleukin 27 3996 rs181206 IL27 246778 16 28420904 NM_145659 NP_663634 C/T L119P minus 617395 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.3 87 by freq 16p11 interleukin 27 3997 rs181206 IL27 246778 16 28420904 NM_145659 NP_663634 C/T L119P minus 1971619 1303 SEQUENOM CEPH CEPH (92) 92 0.43 87 by freq 16p11 interleukin 27 3998 rs181231 OR4D1 26689 17 53552689 XM_292627 XP_292627 C/T P15S plus 1748198 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,submitter,freq,cluster" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 3999 rs181231 OR4D1 26689 17 53552689 XM_292627 XP_292627 C/T P15S plus 23631198 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 4000 rs181231 OR4D1 26689 17 53552689 XM_292627 XP_292627 C/T P15S plus 23631198 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 4001 rs181231 OR4D1 26689 17 53552689 XM_292627 XP_292627 C/T P15S plus 23631198 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 4002 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 80760 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.31 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4003 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 80760 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.13 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4004 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 80760 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.39 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4005 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 7852581 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4006 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 24308158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4007 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 24308158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4008 rs185819 TNXB 7148 6 32158045 NM_019105 NP_061978 C/T H1248R plus 24308158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4009 rs187316 MIDORI 57538 15 83206999 NM_020778 NP_065829 C/T L1622P plus 577733 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,freq" 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 4010 rs188096 SLC10A2 6555 13 102503045 NM_000452 NP_000443 A/C S171A plus 3210569 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.29 123 "by submitter,freq,cluster" 13q33 "solute carrier family 10 (sodium/bile acid cotransporter family), member 2" 4011 rs188096 SLC10A2 6555 13 102503045 NM_000452 NP_000443 A/C S171A plus 23911692 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq,cluster" 13q33 "solute carrier family 10 (sodium/bile acid cotransporter family), member 2" 4012 rs188096 SLC10A2 6555 13 102503045 NM_000452 NP_000443 A/C S171A plus 23911692 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 13q33 "solute carrier family 10 (sodium/bile acid cotransporter family), member 2" 4013 rs188096 SLC10A2 6555 13 102503045 NM_000452 NP_000443 A/C S171A plus 23911692 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 13q33 "solute carrier family 10 (sodium/bile acid cotransporter family), member 2" 4014 rs188242 C15orf22 23423 15 77393338 NM_007364 NP_031390 C/T F118S plus 248976 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 80 by freq 15q24-q25 integral type I protein 4015 rs188242 C15orf22 23423 15 77393338 NM_007364 NP_031390 C/T F118S plus 248976 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 80 by freq 15q24-q25 integral type I protein 4016 rs188242 C15orf22 23423 15 77393338 NM_007364 NP_031390 C/T F118S plus 248976 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.19 80 by freq 15q24-q25 integral type I protein 4017 rs188242 C15orf22 23423 15 77393338 NM_007364 NP_031390 C/T F118S plus 538710 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 15q24-q25 integral type I protein 4018 rs188703 CSPG2 1462 5 82870055 NM_004385 NP_004376 C/T R1826H minus 648869 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4019 rs194134 MYOZ3 91977 5 150032151 NM_133371 NP_588612 A/G S161P minus 1997294 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 121 "HapMap,freq,cluster" 5q33.1 myozenin 3 4020 rs194520 STEAP2 261729 7 89499097 NM_152999 NP_694544 G/T F17C plus 256300 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.3 79 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4021 rs194520 STEAP2 261729 7 89499097 NM_152999 NP_694544 G/T F17C plus 256300 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 79 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4022 rs194520 STEAP2 261729 7 89499097 NM_152999 NP_694544 G/T F17C plus 256300 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.1 79 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4023 rs194520 STEAP2 261729 7 89499097 NM_152999 NP_694544 G/T F17C plus 256300 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 79 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4024 rs194520 STEAP2 261729 7 89499097 NM_152999 NP_694544 G/T F17C plus 256300 1303 SEQUENOM CEPH CEPH (92) 92 1 79 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4025 rs194524 STEAP2 261729 7 89506483 NM_152999 NP_694544 A/G R456Q plus 256305 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4026 rs194524 STEAP2 261729 7 89506483 NM_152999 NP_694544 A/G R456Q plus 24680669 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4027 rs194524 STEAP2 261729 7 89506483 NM_152999 NP_694544 A/G R456Q plus 24680669 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4028 rs194524 STEAP2 261729 7 89506483 NM_152999 NP_694544 A/G R456Q plus 24680669 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq" 7q21 six transmembrane epithelial antigen of prostate 2 4029 rs194525 STEAP2 261729 7 89506541 NM_152999 NP_694544 G/T M475I plus 14567838 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 121 "HapMap,doubleHit,freq,cluster" 7q21 six transmembrane epithelial antigen of prostate 2 4030 rs194998 CDH26 60437 20 58004459 NM_177980 NP_817089 G/T V615L plus 8331628 1303 SEQUENOM CEPH CEPH (92) 92 1 114 by doubleHit 20q13.2-q13.33 cadherin-like 26 4031 rs196864 NEF3 4741 8 24830588 NM_005382 NP_005373 G/T P439T minus 1942340 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by submitter,freq,cluster" 8p21 neurofilament 3 (150kDa medium) 4032 rs196864 NEF3 4741 8 24830588 NM_005382 NP_005373 G/T P439T minus 23809172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by submitter,freq,cluster" 8p21 neurofilament 3 (150kDa medium) 4033 rs196864 NEF3 4741 8 24830588 NM_005382 NP_005373 G/T P439T minus 23809172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 8p21 neurofilament 3 (150kDa medium) 4034 rs196864 NEF3 4741 8 24830588 NM_005382 NP_005373 G/T P439T minus 23809172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 8p21 neurofilament 3 (150kDa medium) 4035 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 2062729 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.37 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4036 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 2062729 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4037 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 4921397 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.27 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4038 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 24421526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4039 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 24421526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4040 rs197367 ANLN 54443 7 36219096 NM_018685 NP_061155 A/G R185K plus 24421526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "HapMap,freq,cluster" 7p15-p14 "anillin, actin binding protein (scraps homolog, Drosophila)" 4041 rs197412 DDX20 11218 1 112020995 NM_007204 NP_009135 C/T I636T plus 2763150 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4042 rs197412 DDX20 11218 1 112020995 NM_007204 NP_009135 C/T I636T plus 24261604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4043 rs197412 DDX20 11218 1 112020995 NM_007204 NP_009135 C/T I636T plus 24261604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4044 rs197412 DDX20 11218 1 112020995 NM_007204 NP_009135 C/T I636T plus 24261604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4045 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 901 AFFY AfAm 4 1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4046 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 902 AFFY Caucasian 24 0.08 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4047 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4048 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 904 AFFY CEPH 10 1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4049 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 905 AFFY PDpanel 42 0.07 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4050 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 91720 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4051 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 838426 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4052 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 838426 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 10 0.5 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4053 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 838426 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4054 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 838426 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.15 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4055 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 23183317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4056 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 23183317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.43 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4057 rs197414 DDX20 11218 1 112021165 NM_007204 NP_009135 A/C R693S plus 23183317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p21.1-p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 4058 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 260454 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.22 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4059 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 260454 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.44 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4060 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 260454 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.33 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4061 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 1832058 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4062 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 24111289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4063 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 24111289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4064 rs197922 GOSR2 9570 17 42363569 NM_004287 NP_004278 A/G R67K plus 24111289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4065 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 260454 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.22 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4066 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 260454 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.44 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4067 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 260454 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.33 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4068 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 1832058 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4069 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 24111289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4070 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 24111289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4071 rs197922 GOSR2 9570 17 42363569 NM_054022 NP_473363 A/G R67K plus 24111289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 17q21 golgi SNAP receptor complex member 2 4072 rs198915 KRTAP22-1 337979 21 30895387 NM_181620 NP_853651 A/T L26H minus 67631 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.07 123 "by doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 22-1 4073 rs198915 KRTAP22-1 337979 21 30895387 NM_181620 NP_853651 A/T L26H minus 24101884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 22-1 4074 rs198915 KRTAP22-1 337979 21 30895387 NM_181620 NP_853651 A/T L26H minus 24101884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 22-1 4075 rs198915 KRTAP22-1 337979 21 30895387 NM_181620 NP_853651 A/T L26H minus 24101884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 22-1 4076 rs198977 KLK2 3817 19 56073589 NM_005551 NP_005542 C/T R250W plus 2041639 1303 SEQUENOM CEPH CEPH (92) 92 0.24 106 "by cluster,freq" 19q13.41 "kallikrein 2, prostatic" 4077 rs198977 KLK2 3817 19 56073589 NM_005551 NP_005542 C/T R250W plus 3234945 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.25 106 "by cluster,freq" 19q13.41 "kallikrein 2, prostatic" 4078 rs200454 DNAJC11 55735 1 6640140 NM_018198 NP_060668 C/G T290S plus 5234802 1303 SEQUENOM CEPH CEPH (92) 92 0.16 110 "by doubleHit,freq" 1p36.23 "DnaJ (Hsp40) homolog, subfamily C, member 11" 4079 rs200484 HIST1H2BL 8340 6 27883653 NM_003519 NP_003510 A/G L4P plus 858400 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq" 6p22-p21.3 "histone 1, H2bl" 4080 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 605502 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4081 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 605502 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4082 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 605502 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4083 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 23739871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4084 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 23739871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4085 rs202676 FOLH1 2346 11 49184196 NM_004476 NP_004467 C/T Y75H minus 23739871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by doubleHit,freq,cluster" 11p11.2 folate hydrolase (prostate-specific membrane antigen) 1 4086 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 266958 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4087 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 266958 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4088 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 266958 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4089 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 1647656 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4090 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 1647656 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4091 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 24590791 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4092 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 24590791 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4093 rs203462 AKAP10 11216 17 19753133 NM_007202 NP_009133 A/G I646V minus 24590791 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 4094 rs203710 PVR 5817 19 49853878 NM_006505 NP_006496 A/G I340M plus 484460 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,freq,cluster" 19q13.2 poliovirus receptor 4095 rs203710 PVR 5817 19 49853878 NM_006505 NP_006496 A/G I340M plus 484460 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 121 "HapMap,freq,cluster" 19q13.2 poliovirus receptor 4096 rs203710 PVR 5817 19 49853878 NM_006505 NP_006496 A/G I340M plus 484460 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "HapMap,freq,cluster" 19q13.2 poliovirus receptor 4097 rs203710 PVR 5817 19 49853878 NM_006505 NP_006496 A/G I340M plus 484460 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.02 121 "HapMap,freq,cluster" 19q13.2 poliovirus receptor 4098 rs203710 PVR 5817 19 49853878 NM_006505 NP_006496 A/G I340M plus 1821115 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 121 "HapMap,freq,cluster" 19q13.2 poliovirus receptor 4099 rs204896 TNXB 7148 6 32172076 NM_019105 NP_061978 C/T R511H plus 661712 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by cluster,freq" 6p21.3 tenascin XB 4100 rs204896 TNXB 7148 6 32172076 NM_019105 NP_061978 C/T R511H plus 3195000 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 123 "by cluster,freq" 6p21.3 tenascin XB 4101 rs204896 TNXB 7148 6 32172076 NM_019105 NP_061978 C/T R511H plus 23714822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 tenascin XB 4102 rs204896 TNXB 7148 6 32172076 NM_019105 NP_061978 C/T R511H plus 23714822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by cluster,freq" 6p21.3 tenascin XB 4103 rs204896 TNXB 7148 6 32172076 NM_019105 NP_061978 C/T R511H plus 23714822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 6p21.3 tenascin XB 4104 rs204900 TNXB 7148 6 32164558 NM_019105 NP_061978 G/T S873A minus 268677 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.18 121 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4105 rs204900 TNXB 7148 6 32164558 NM_019105 NP_061978 G/T S873A minus 268677 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.06 121 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4106 rs204900 TNXB 7148 6 32164558 NM_019105 NP_061978 G/T S873A minus 268677 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4107 rs204900 TNXB 7148 6 32164558 NM_019105 NP_061978 G/T S873A minus 466452 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq,cluster" 6p21.3 tenascin XB 4108 rs205498 TRIM25 7706 17 52333793 NM_005082 NP_005073 C/T P358L minus 1830958 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 4109 rs205498 TRIM25 7706 17 52333793 NM_005082 NP_005073 C/T P358L minus 3247929 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 121 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 4110 rs208294 P2RX7 5027 12 120062973 NM_002562 NP_002553 A/G Y155H minus 2985837 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.46 120 "by doubleHit,cluster" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 4111 rs208696 SASH1 23328 6 148906950 NM_015278 NP_056093 A/G Q884R plus 4920175 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 123 "by doubleHit,freq,cluster" 6q24.3 SAM and SH3 domain containing 1 4112 rs208696 SASH1 23328 6 148906950 NM_015278 NP_056093 A/G Q884R plus 5221682 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by doubleHit,freq,cluster" 6q24.3 SAM and SH3 domain containing 1 4113 rs208696 SASH1 23328 6 148906950 NM_015278 NP_056093 A/G Q884R plus 24484549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q24.3 SAM and SH3 domain containing 1 4114 rs208696 SASH1 23328 6 148906950 NM_015278 NP_056093 A/G Q884R plus 24484549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6q24.3 SAM and SH3 domain containing 1 4115 rs208696 SASH1 23328 6 148906950 NM_015278 NP_056093 A/G Q884R plus 24484549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 6q24.3 SAM and SH3 domain containing 1 4116 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 1846412 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4117 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 1846412 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4118 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 3213878 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.3 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4119 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 24664200 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4120 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 24664200 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4121 rs208753 PCM1 5108 8 17859195 NM_006197 NP_006188 A/G M597V plus 24664200 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 4122 rs210280 ZNF11B 7558 10 42409971 NM_006955 NP_008886 A/G R145C plus 2677121 1303 SEQUENOM CEPH CEPH (92) 92 0.26 122 "by doubleHit,freq,cluster" 10q11.2 zinc finger protein 11b (KOX 2) 4123 rs210968 ROS1 6098 6 117728843 NM_002944 NP_002935 A/C N2240K plus 537765 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 4124 rs210968 ROS1 6098 6 117728843 NM_002944 NP_002935 A/C N2240K plus 23337523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 4125 rs210968 ROS1 6098 6 117728843 NM_002944 NP_002935 A/C N2240K plus 23337523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 4126 rs210968 ROS1 6098 6 117728843 NM_002944 NP_002935 A/C N2240K plus 23337523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 4127 rs212989 SLC5A9 200010 1 48407101 XM_117174 XP_117174 A/G V152M plus 3309457 1303 SEQUENOM CEPH CEPH (92) 92 0.2 111 "by doubleHit,freq" 1p33 "solute carrier family 5 (sodium/glucose cotransporter), member 9" 4128 rs213950 CFTR 1080 7 116793484 NM_000492 NP_000483 A/G V470M plus 24012792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 4129 rs213950 CFTR 1080 7 116793484 NM_000492 NP_000483 A/G V470M plus 24012792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 4130 rs213950 CFTR 1080 7 116793484 NM_000492 NP_000483 A/G V470M plus 24012792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 4131 rs214950 SYNE1 23345 6 152800424 NM_033071 NP_149062 A/G A2802V plus 1721389 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 121 "HapMap,doubleHit,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 4132 rs214950 SYNE1 23345 6 152800424 NM_033071 NP_149062 A/G A2802V plus 1721389 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "HapMap,doubleHit,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 4133 rs214950 SYNE1 23345 6 152800424 NM_182961 NP_892006 A/G A2795V plus 1721389 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 121 "HapMap,doubleHit,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 4134 rs214950 SYNE1 23345 6 152800424 NM_182961 NP_892006 A/G A2795V plus 1721389 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "HapMap,doubleHit,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 4135 rs214976 SYNE1 23345 6 152864378 NM_033071 NP_149062 C/T V1042A minus 701378 1303 SEQUENOM CEPH CEPH (92) 92 0.28 119 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 4136 rs214976 SYNE1 23345 6 152864378 NM_182961 NP_892006 C/T V1035A minus 701378 1303 SEQUENOM CEPH CEPH (92) 92 0.28 119 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 4137 rs216321 VWF 7450 12 6014245 NM_000552 NP_000543 C/T Q852R plus 667776 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by submitter,freq,cluster" 12p13.3 von Willebrand factor 4138 rs216321 VWF 7450 12 6014245 NM_000552 NP_000543 C/T Q852R plus 3194293 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.19 123 "by submitter,freq,cluster" 12p13.3 von Willebrand factor 4139 rs216321 VWF 7450 12 6014245 NM_000552 NP_000543 C/T Q852R plus 24166811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 12p13.3 von Willebrand factor 4140 rs216321 VWF 7450 12 6014245 NM_000552 NP_000543 C/T Q852R plus 24166811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 12p13.3 von Willebrand factor 4141 rs216321 VWF 7450 12 6014245 NM_000552 NP_000543 C/T Q852R plus 24166811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 12p13.3 von Willebrand factor 4142 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 745848 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4143 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 745848 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.35 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4144 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 745848 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.4 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4145 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 23377436 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4146 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 23377436 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4147 rs217086 CTSC 1075 11 87685231 NM_001814 NP_001805 A/G I153T plus 23377436 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11q14.1-q14.3 cathepsin C 4148 rs217180 PMFBP1 83449 16 70742130 NM_031293 NP_112583 A/G A172T minus 3288372 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq" 16q22.2 polyamine modulated factor 1 binding protein 1 4149 rs217180 PMFBP1 83449 16 70742130 NM_031293 NP_112583 A/G A172T minus 3288372 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,submitter,freq" 16q22.2 polyamine modulated factor 1 binding protein 1 4150 rs217180 PMFBP1 83449 16 70742130 NM_031293 NP_112583 A/G A172T minus 24576958 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq" 16q22.2 polyamine modulated factor 1 binding protein 1 4151 rs217180 PMFBP1 83449 16 70742130 NM_031293 NP_112583 A/G A172T minus 24576958 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq" 16q22.2 polyamine modulated factor 1 binding protein 1 4152 rs217180 PMFBP1 83449 16 70742130 NM_031293 NP_112583 A/G A172T minus 24576958 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq" 16q22.2 polyamine modulated factor 1 binding protein 1 4153 rs218966 PHF14 9678 7 10795470 XM_376578 XP_376578 C/T K115R minus 4933830 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.44 121 "by doubleHit,freq,cluster" 7p21.3 PHD finger protein 14 4154 rs220159 UMODL1 89766 21 42420942 NM_173568 NP_775839 C/T D162N minus 24605138 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 21q22.3 uromodulin-like 1 4155 rs220159 UMODL1 89766 21 42420942 NM_173568 NP_775839 C/T D162N minus 24605138 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 21q22.3 uromodulin-like 1 4156 rs220159 UMODL1 89766 21 42420942 NM_173568 NP_775839 C/T D162N minus 24605138 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 21q22.3 uromodulin-like 1 4157 rs220379 ZNF263 10127 16 3279436 NM_005741 NP_005732 C/G C310S plus 595513 1303 SEQUENOM CEPH CEPH (92) 92 0.42 116 "by doubleHit,freq,cluster" 16p13.3 zinc finger protein 263 4158 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 1629759 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4159 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 1629759 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4160 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 4996209 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4161 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 24443575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4162 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 24443575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4163 rs220461 GSG2 83903 17 3574961 NM_031965 NP_114171 A/G I328T minus 24443575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13 haspin 4164 rs220462 GSG2 83903 17 3574589 NM_031965 NP_114171 C/T G204D minus 1629760 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,freq" 17p13 haspin 4165 rs220479 ITGAE 3682 17 3603924 NM_002208 NP_002199 A/G I477V minus 21431179 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "by cluster,freq" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 4166 rs221057 ARHGEF19 128272 1 16279561 NM_153213 NP_694945 C/G E238Q plus 467920 1303 SEQUENOM CEPH CEPH (92) 92 0.37 119 "by doubleHit,freq,cluster" 1p36.13 Rho guanine nucleotide exchange factor (GEF) 19 4167 rs221058 ARHGEF19 128272 1 16279952 NM_153213 NP_694945 C/G G163R plus 465474 1303 SEQUENOM CEPH CEPH (92) 92 0.25 119 "by doubleHit,freq" 1p36.13 Rho guanine nucleotide exchange factor (GEF) 19 4168 rs223124 ZFHX2 85446 14 23062582 XM_033370 XP_033370 G/T S1087R plus 1873093 1303 SEQUENOM CEPH CEPH (92) 92 0.18 108 "by cluster,freq" 14q11.2 zinc finger homeobox 2 4169 rs224222 MEFV 4210 16 3244464 NM_000243 NP_000234 A/G R202Q minus 508456 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by cluster,freq" 16p13.3 Mediterranean fever 4170 rs224222 MEFV 4210 16 3244464 NM_000243 NP_000234 A/G R202Q minus 15356115 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 "by cluster,freq" 16p13.3 Mediterranean fever 4171 rs224222 MEFV 4210 16 3244464 NM_000243 NP_000234 A/G R202Q minus 15356115 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.3 120 "by cluster,freq" 16p13.3 Mediterranean fever 4172 rs224222 MEFV 4210 16 3244464 NM_000243 NP_000234 A/G R202Q minus 15356115 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by cluster,freq" 16p13.3 Mediterranean fever 4173 rs224331 GDF5 8200 20 33485801 NM_000557 NP_000548 A/C S276A plus 8375421 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 20q11.2 growth differentiation factor 5 (cartilage-derived morphogenetic protein-1) 4174 rs224331 GDF5 8200 20 33485801 NM_000557 NP_000548 A/C S276A plus 23566430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.2 growth differentiation factor 5 (cartilage-derived morphogenetic protein-1) 4175 rs224331 GDF5 8200 20 33485801 NM_000557 NP_000548 A/C S276A plus 23566430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 20q11.2 growth differentiation factor 5 (cartilage-derived morphogenetic protein-1) 4176 rs224331 GDF5 8200 20 33485801 NM_000557 NP_000548 A/C S276A plus 23566430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 20q11.2 growth differentiation factor 5 (cartilage-derived morphogenetic protein-1) 4177 rs225014 DIO2 1734 14 79739333 NM_000793 NP_000784 C/T T92A plus 5001961 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.35 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4178 rs225014 DIO2 1734 14 79739333 NM_000793 NP_000784 C/T T92A plus 5210883 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4179 rs225014 DIO2 1734 14 79739333 NM_000793 NP_000784 C/T T92A plus 24132460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4180 rs225014 DIO2 1734 14 79739333 NM_000793 NP_000784 C/T T92A plus 24132460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4181 rs225014 DIO2 1734 14 79739333 NM_000793 NP_000784 C/T T92A plus 24132460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4182 rs225014 DIO2 1734 14 79739333 NM_013989 NP_054644 C/T T92A plus 5001961 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.35 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4183 rs225014 DIO2 1734 14 79739333 NM_013989 NP_054644 C/T T92A plus 5210883 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4184 rs225014 DIO2 1734 14 79739333 NM_013989 NP_054644 C/T T92A plus 24132460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4185 rs225014 DIO2 1734 14 79739333 NM_013989 NP_054644 C/T T92A plus 24132460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4186 rs225014 DIO2 1734 14 79739333 NM_013989 NP_054644 C/T T92A plus 24132460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 14q24.2-q24.3 "deiodinase, iodothyronine, type II" 4187 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 2775282 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4188 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 2775282 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4189 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 4008063 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4190 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 24025516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4191 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 24025516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4192 rs226794 ADAMTS5 11096 21 27224226 NM_007038 NP_008969 A/G L692P plus 24025516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 4193 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 510878 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4194 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 510878 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.2 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4195 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 510878 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.25 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4196 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 510878 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4197 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 510878 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4198 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 24068106 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4199 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 24068106 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4200 rs226891 CP110 9738 16 19455248 NM_014711 NP_055526 C/G I252M plus 24068106 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 16p13.11 CP110 protein 4201 rs227653 CST7 8530 20 24878085 NM_003650 NP_003641 A/G E4K plus 3395667 1303 SEQUENOM CEPH CEPH (92) 92 0.09 120 by freq 20p11.21 cystatin F (leukocystatin) 4202 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 506366 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4203 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 506366 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4204 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 1630503 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4205 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 1630503 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4206 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 24114722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4207 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 24114722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4208 rs227787 OR3A3 8392 17 3271560 NM_012373 NP_036505 C/T K317E minus 24114722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4209 rs227789 OR3A3 8392 17 3270754 NM_012373 NP_036505 C/T T48I plus 4930677 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.36 123 "by doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 4210 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 1312432 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4211 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 1312432 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4212 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 1312432 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.34 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4213 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 4020771 634 PERLEGEN NCBI|NIHPDR NIHPDR 8 0.25 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4214 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 24132919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4215 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 24132919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4216 rs228104 SLC37A1 54020 21 42859024 NM_018964 NP_061837 C/T V414I minus 24132919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1" 4217 rs228648 UTS2 10911 1 7847696 NM_021995 NP_068835 A/G T21M plus 1644161 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 121 "by doubleHit,submitter,freq,cluster" 1p36 urotensin 2 4218 rs228648 UTS2 10911 1 7847696 NM_021995 NP_068835 A/G T21M plus 1644161 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.45 121 "by doubleHit,submitter,freq,cluster" 1p36 urotensin 2 4219 rs228648 UTS2 10911 1 7847696 NM_021995 NP_068835 A/G T21M plus 1644161 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 121 "by doubleHit,submitter,freq,cluster" 1p36 urotensin 2 4220 rs228648 UTS2 10911 1 7847696 NM_021995 NP_068835 A/G T21M plus 1644161 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.45 121 "by doubleHit,submitter,freq,cluster" 1p36 urotensin 2 4221 rs228648 UTS2 10911 1 7847696 NM_021995 NP_068835 A/G T21M plus 5000217 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1284 0.37 121 "by doubleHit,submitter,freq,cluster" 1p36 urotensin 2 4222 rs228696 PER3 8863 1 7821759 NM_016831 NP_058515 C/T L827P plus 648693 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 "by cluster,freq" 1p36.23 period homolog 3 (Drosophila) 4223 rs228697 PER3 8863 1 7821845 NM_016831 NP_058515 C/G P856A plus 649604 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 by freq 1p36.23 period homolog 3 (Drosophila) 4224 rs228757 HDAC5 10014 17 39520411 NM_005474 NP_005465 C/G D593E minus 1824877 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.3 120 "HapMap,doubleHit,freq,cluster" 17q21 histone deacetylase 5 4225 rs228757 HDAC5 10014 17 39520411 NM_005474 NP_005465 C/G D593E minus 1824877 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "HapMap,doubleHit,freq,cluster" 17q21 histone deacetylase 5 4226 rs228757 HDAC5 10014 17 39520411 NM_139205 NP_631944 C/G D593E minus 1824877 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.3 120 "HapMap,doubleHit,freq,cluster" 17q21 histone deacetylase 5 4227 rs228757 HDAC5 10014 17 39520411 NM_139205 NP_631944 C/G D593E minus 1824877 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "HapMap,doubleHit,freq,cluster" 17q21 histone deacetylase 5 4228 rs228942 IL2RB 3560 22 35849119 NM_000878 NP_000869 A/C D391E minus 3189405 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.25 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "interleukin 2 receptor, beta" 4229 rs228942 IL2RB 3560 22 35849119 NM_000878 NP_000869 A/C D391E minus 4479476 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "interleukin 2 receptor, beta" 4230 rs228942 IL2RB 3560 22 35849119 NM_000878 NP_000869 A/C D391E minus 4479476 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.17 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "interleukin 2 receptor, beta" 4231 rs228942 IL2RB 3560 22 35849119 NM_000878 NP_000869 A/C D391E minus 4479476 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "interleukin 2 receptor, beta" 4232 rs228942 IL2RB 3560 22 35849119 NM_000878 NP_000869 A/C D391E minus 4479476 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "interleukin 2 receptor, beta" 4233 rs229150 SCFD1 23256 14 30169489 NM_016106 NP_057190 C/T K63R minus 24542261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 14q12 sec1 family domain containing 1 4234 rs229150 SCFD1 23256 14 30169489 NM_016106 NP_057190 C/T K63R minus 24542261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 14q12 sec1 family domain containing 1 4235 rs229150 SCFD1 23256 14 30169489 NM_016106 NP_057190 C/T K63R minus 24542261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 14q12 sec1 family domain containing 1 4236 rs229526 C1QTNF6 114904 22 35905922 NM_031910 NP_114116 C/G P42R minus 8296277 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4237 rs229526 C1QTNF6 114904 22 35905922 NM_031910 NP_114116 C/G P42R minus 8296277 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4238 rs229526 C1QTNF6 114904 22 35905922 NM_031910 NP_114116 C/G P42R minus 24601542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4239 rs229526 C1QTNF6 114904 22 35905922 NM_031910 NP_114116 C/G P42R minus 24601542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4240 rs229526 C1QTNF6 114904 22 35905922 NM_031910 NP_114116 C/G P42R minus 24601542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4241 rs229526 C1QTNF6 114904 22 35905922 NM_182486 NP_872292 C/G P42R minus 8296277 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4242 rs229526 C1QTNF6 114904 22 35905922 NM_182486 NP_872292 C/G P42R minus 8296277 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4243 rs229526 C1QTNF6 114904 22 35905922 NM_182486 NP_872292 C/G P42R minus 24601542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4244 rs229526 C1QTNF6 114904 22 35905922 NM_182486 NP_872292 C/G P42R minus 24601542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4245 rs229526 C1QTNF6 114904 22 35905922 NM_182486 NP_872292 C/G P42R minus 24601542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq" 22q13.1 C1q and tumor necrosis factor related protein 6 4246 rs229568 SSTR3 6753 22 35927111 NM_001051 NP_001042 C/G S411T minus 2048808 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq" 22q13.1 somatostatin receptor 3 4247 rs229568 SSTR3 6753 22 35927111 NM_001051 NP_001042 C/G S411T minus 23647560 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq" 22q13.1 somatostatin receptor 3 4248 rs229568 SSTR3 6753 22 35927111 NM_001051 NP_001042 C/G S411T minus 23647560 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq" 22q13.1 somatostatin receptor 3 4249 rs229568 SSTR3 6753 22 35927111 NM_001051 NP_001042 C/G S411T minus 23647560 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 22q13.1 somatostatin receptor 3 4250 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4251 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4252 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4253 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4254 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4255 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 609437 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4256 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 24594026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4257 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 24594026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4258 rs230898 TEKT3 64518 17 15158162 NM_031898 NP_114104 C/G G282A minus 24594026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17p12 tektin 3 4259 rs231458 23591 17 39350320 XM_498424 XP_498424 A/G T39M minus 1825055 1303 SEQUENOM CEPH CEPH (92) 92 0.48 116 "by doubleHit,freq,cluster" 17q21.31 apoptosis related protein 4260 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 545243 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4261 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 545243 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.46 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4262 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 545243 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4263 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 545243 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4264 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 3203238 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.26 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4265 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.3 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4266 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.21 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4267 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 776 SNP500CANCER AFR1 African / African-American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4268 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 777 SNP500CANCER HISP1 Hispanic (23) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4269 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4270 rs231775 CTLA4 1493 2 204558220 NM_005214 NP_005205 A/G T17A plus 6903722 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,submitter,freq,cluster" 2q33 cytotoxic T-lymphocyte-associated protein 4 4271 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 2257786 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.47 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4272 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 2257786 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.32 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4273 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 2257786 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4274 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 3243518 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.45 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4275 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 4002906 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.22 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4276 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 24209420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4277 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 24209420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4278 rs232518 NCAM2 4685 21 21668058 NM_004540 NP_004531 C/T L350P plus 24209420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 21q21.1 neural cell adhesion molecule 2 4279 rs232729 WFDC10B 280664 20 43748023 NM_172006 NP_742003 A/G L8P plus 8392952 1303 SEQUENOM CEPH CEPH (92) 92 0.19 121 "by cluster,freq" 20q13.12 WAP four-disulfide core domain 10B 4280 rs233223 MEP1B 4225 18 28049099 NM_005925 NP_005916 A/G S546P minus 557201 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 120 "by doubleHit,cluster" 18q12.2-q12.3 "meprin A, beta" 4281 rs233223 MEP1B 4225 18 28049099 NM_005925 NP_005916 A/G S546P minus 557201 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 120 "by doubleHit,cluster" 18q12.2-q12.3 "meprin A, beta" 4282 rs233223 MEP1B 4225 18 28049099 NM_005925 NP_005916 A/G S546P minus 557201 1303 SEQUENOM CEPH CEPH (92) 92 0.12 120 "by doubleHit,cluster" 18q12.2-q12.3 "meprin A, beta" 4283 rs235035 B4GALT5 9334 20 47686321 NM_004776 NP_004767 C/T D368N plus 1338160 685 TSC-SANGER SC_96_C 18 0.06 120 by freq 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 4284 rs235035 B4GALT5 9334 20 47686321 NM_004776 NP_004767 C/T D368N plus 1338160 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 4 0.09 120 by freq 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 4285 rs235035 B4GALT5 9334 20 47686321 NM_004776 NP_004767 C/T D368N plus 1338160 1303 SEQUENOM CEPH CEPH (92) 92 0.14 120 by freq 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 4286 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 1213464 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.25 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4287 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 1213464 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.17 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4288 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 1213464 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.21 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4289 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 1643783 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4290 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 2517285 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.25 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4291 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 2517285 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.17 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4292 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 2517285 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.21 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4293 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 23201224 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4294 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 23201224 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4295 rs235468 XTP2 23215 1 168246389 NM_015172 NP_055987 C/G S1624C minus 23201224 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 1q23.3 HBxAg transactivated protein 2 4296 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 304296 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.25 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4297 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 304296 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4298 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 304296 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4299 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 304296 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.39 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4300 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 3176830 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.22 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4301 rs235768 BMP2 650 20 6707115 NM_001200 NP_001191 A/T R190S plus 8367997 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "by doubleHit,freq,cluster" 20p12 bone morphogenetic protein 2 4302 rs236110 MCM8 84515 20 5881108 NM_032485 NP_115874 G/T Q63K minus 569235 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4303 rs236110 MCM8 84515 20 5881108 NM_032485 NP_115874 G/T Q63K minus 23544265 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4304 rs236110 MCM8 84515 20 5881108 NM_032485 NP_115874 G/T Q63K minus 23544265 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4305 rs236110 MCM8 84515 20 5881108 NM_032485 NP_115874 G/T Q63K minus 23544265 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4306 rs236110 MCM8 84515 20 5881108 NM_182802 NP_877954 G/T Q63K minus 569235 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4307 rs236110 MCM8 84515 20 5881108 NM_182802 NP_877954 G/T Q63K minus 23544265 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4308 rs236110 MCM8 84515 20 5881108 NM_182802 NP_877954 G/T Q63K minus 23544265 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4309 rs236110 MCM8 84515 20 5881108 NM_182802 NP_877954 G/T Q63K minus 23544265 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 4310 rs236150 CHGB 1114 20 5851141 NM_001819 NP_001810 C/G K117N plus 1338565 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.16 123 by freq 20pter-p12 chromogranin B (secretogranin 1) 4311 rs236150 CHGB 1114 20 5851141 NM_001819 NP_001810 C/G K117N plus 1338565 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 1 123 by freq 20pter-p12 chromogranin B (secretogranin 1) 4312 rs236150 CHGB 1114 20 5851141 NM_001819 NP_001810 C/G K117N plus 1338565 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 1 123 by freq 20pter-p12 chromogranin B (secretogranin 1) 4313 rs236150 CHGB 1114 20 5851141 NM_001819 NP_001810 C/G K117N plus 1338565 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 20pter-p12 chromogranin B (secretogranin 1) 4314 rs236151 CHGB 1114 20 5851517 NM_001819 NP_001810 A/G T243A plus 8367065 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 20pter-p12 chromogranin B (secretogranin 1) 4315 rs236152 CHGB 1114 20 5851848 NM_001819 NP_001810 C/G A353G plus 134632 1303 SEQUENOM CEPH CEPH (92) 92 0.24 111 "by doubleHit,freq" 20pter-p12 chromogranin B (secretogranin 1) 4316 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 1 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4317 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.14 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4318 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4319 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4320 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 1 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4321 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4322 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4323 rs237831 DDX28 55794 16 66614597 NM_018380 NP_060850 A/G T4A minus 129227 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "HapMap,freq" 16q22.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 4324 rs237906 OXTR 5021 3 8784828 NM_000916 NP_000907 A/C A16S plus 24797803 1303 SEQUENOM CEPH CEPH (92) 184 0.29 123 by freq 3p25 oxytocin receptor 4325 rs238234 CAMTA2 23125 17 4824542 NM_015099 NP_055914 C/G A267P plus 129424 1303 SEQUENOM CEPH CEPH (92) 92 0.26 121 "by doubleHit,freq,cluster" 17p13.3 calmodulin binding transcription activator 2 4326 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 525802 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4327 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 525802 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4328 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 525802 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4329 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 525802 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4330 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 525802 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4331 rs238238 ENO3 2027 17 4797122 NM_001976 NP_001967 A/G S71N plus 2985046 738 YUSUKE JBIC-ALLELE Japanese (752) 1072 0.42 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4332 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 525802 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4333 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 525802 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4334 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 525802 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4335 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 525802 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4336 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 525802 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4337 rs238238 ENO3 2027 17 4797122 NM_053013 NP_443739 A/G S71N plus 2985046 738 YUSUKE JBIC-ALLELE Japanese (752) 1072 0.42 120 "HapMap,doubleHit,freq,cluster" 17pter-p11 "enolase 3, (beta, muscle)" 4338 rs238239 ENO3 2027 17 4797326 NM_001976 NP_001967 C/T A85V plus 1648469 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by cluster,freq" 17pter-p11 "enolase 3, (beta, muscle)" 4339 rs238239 ENO3 2027 17 4797326 NM_053013 NP_443739 C/T A85V plus 1648469 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by cluster,freq" 17pter-p11 "enolase 3, (beta, muscle)" 4340 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 1841581 885 TSC-CSHL HapMap-CEPH-30-trios 106 0.27 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4341 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 1841581 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4342 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 2983749 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.27 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4343 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 24298089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4344 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 24298089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.22 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4345 rs240033 SLC22A14 9389 3 38332965 NM_004803 NP_004794 C/G P560R plus 24298089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 4346 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 1631964 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4347 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 5009439 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.11 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4348 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 16335969 901 AFFY AfAm 12 0.17 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4349 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 16335969 902 AFFY Caucasian 24 0.13 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4350 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 16335969 903 AFFY Asian 10 0.2 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4351 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 16335969 904 AFFY CEPH 12 1 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4352 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 16335969 905 AFFY PDpanel 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4353 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 23407849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4354 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 23407849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4355 rs240768 HELIC1 10973 6 101064065 NM_006828 NP_006819 C/T Y2176C plus 23407849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4356 rs240780 HELIC1 10973 6 101070868 NM_006828 NP_006819 C/G S1995C plus 1631950 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4357 rs240780 HELIC1 10973 6 101070868 NM_006828 NP_006819 C/G S1995C plus 24425049 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4358 rs240780 HELIC1 10973 6 101070868 NM_006828 NP_006819 C/G S1995C plus 24425049 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4359 rs240780 HELIC1 10973 6 101070868 NM_006828 NP_006819 C/G S1995C plus 24425049 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 6q16 "helicase, ATP binding 1" 4360 rs241419 PSMB9 5698 6 32931926 NM_002800 NP_002791 C/T V32I minus 1448588 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4361 rs241419 PSMB9 5698 6 32931926 NM_002800 NP_002791 C/T V32I minus 23718280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4362 rs241419 PSMB9 5698 6 32931926 NM_002800 NP_002791 C/T V32I minus 23718280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4363 rs241419 PSMB9 5698 6 32931926 NM_002800 NP_002791 C/T V32I minus 23718280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4364 rs241419 PSMB9 5698 6 32931926 NM_002800 NP_002791 C/T V32I minus 24796295 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4365 rs241419 PSMB9 5698 6 32931926 NM_148954 NP_683756 C/T V22I minus 1448588 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4366 rs241419 PSMB9 5698 6 32931926 NM_148954 NP_683756 C/T V22I minus 23718280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4367 rs241419 PSMB9 5698 6 32931926 NM_148954 NP_683756 C/T V22I minus 23718280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4368 rs241419 PSMB9 5698 6 32931926 NM_148954 NP_683756 C/T V22I minus 23718280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4369 rs241419 PSMB9 5698 6 32931926 NM_148954 NP_683756 C/T V22I minus 24796295 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 4370 rs241447 TAP2 6891 6 32904729 NM_000544 NP_000535 A/G T665A minus 1954321 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4371 rs241447 TAP2 6891 6 32904729 NM_000544 NP_000535 A/G T665A minus 2985102 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.35 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4372 rs241447 TAP2 6891 6 32904729 NM_000544 NP_000535 A/G T665A minus 3173073 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.22 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4373 rs241447 TAP2 6891 6 32904729 NM_000544 NP_000535 A/G T665A minus 24796293 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4374 rs241448 TAP2 6891 6 32904663 NM_000544 NP_000535 C/T *687Q minus 1954322 1303 SEQUENOM CEPH CEPH (92) 92 0.3 120 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4375 rs241448 TAP2 6891 6 32904663 NM_000544 NP_000535 C/T *687Q minus 3173074 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.19 120 "by doubleHit,freq,cluster" 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 4376 rs241571 PKD1 5310 16 2099968 NM_000296 NP_000287 G/T T1734K plus 708297 1303 SEQUENOM CEPH CEPH (92) 92 0.1 87 by freq 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4377 rs241572 PKD1 5310 16 2100499 NM_000296 NP_000287 C/G R1557P minus 311046 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 9 0.5 86 "HapMap,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4378 rs241572 PKD1 5310 16 2100499 NM_000296 NP_000287 C/G R1557P minus 311046 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 5 0.5 86 "HapMap,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4379 rs241572 PKD1 5310 16 2100499 NM_000296 NP_000287 C/G R1557P minus 726558 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 86 "HapMap,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4380 rs241572 PKD1 5310 16 2100499 NM_000296 NP_000287 C/G R1557P minus 726558 1303 SEQUENOM CEPH CEPH (92) 92 1 86 "HapMap,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4381 rs241573 PKD1 5310 16 2101828 NM_000296 NP_000287 A/C L1114R plus 655697 1303 SEQUENOM CEPH CEPH (92) 92 0.42 87 by freq 16p13.3 polycystic kidney disease 1 (autosomal dominant) 4382 rs242056 SHREW1 55966 1 4683090 NM_018836 NP_061324 A/G G263R plus 1819542 1303 SEQUENOM CEPH CEPH (92) 92 0.1 119 "by cluster,freq" 1p36.31 transmembrane protein SHREW1 4383 rs242056 SHREW1 55966 1 4683090 NM_018836 NP_061324 A/G G263R plus 2985830 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.35 119 "by cluster,freq" 1p36.31 transmembrane protein SHREW1 4384 rs242944 IMP5 162540 17 41278960 NM_175882 NP_787078 C/T H303R minus 1844524 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq" 17q21.31 intramembrane protease 5 4385 rs242944 IMP5 162540 17 41278960 NM_175882 NP_787078 C/T H303R minus 24592479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq" 17q21.31 intramembrane protease 5 4386 rs242944 IMP5 162540 17 41278960 NM_175882 NP_787078 C/T H303R minus 24592479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,submitter,freq" 17q21.31 intramembrane protease 5 4387 rs242944 IMP5 162540 17 41278960 NM_175882 NP_787078 C/T H303R minus 24592479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq" 17q21.31 intramembrane protease 5 4388 rs243383 CHAF1A 10036 19 4393999 NM_005483 NP_005474 G/T S932A plus 533184 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 4389 rs243383 CHAF1A 10036 19 4393999 NM_005483 NP_005474 G/T S932A plus 24060164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 4390 rs243383 CHAF1A 10036 19 4393999 NM_005483 NP_005474 G/T S932A plus 24060164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 4391 rs243383 CHAF1A 10036 19 4393999 NM_005483 NP_005474 G/T S932A plus 24060164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 4392 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 818727 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4393 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 818727 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4394 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 818727 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4395 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 818727 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4396 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 2274905 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4397 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 2274905 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4398 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 3253026 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4399 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 24671348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4400 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 24671348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4401 rs244903 RARS 5917 5 167846088 NM_002887 NP_002878 A/G V3I plus 24671348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35.1 arginyl-tRNA synthetase 4402 rs246074 PCDHAC1 56135 5 140288153 NM_018898 NP_061721 C/G L498V minus 611472 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4403 rs246074 PCDHAC1 56135 5 140288153 NM_018898 NP_061721 C/G L498V minus 2986036 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.45 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4404 rs246074 PCDHAC1 56135 5 140288153 NM_018898 NP_061721 C/G L498V minus 24145291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4405 rs246074 PCDHAC1 56135 5 140288153 NM_018898 NP_061721 C/G L498V minus 24145291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4406 rs246074 PCDHAC1 56135 5 140288153 NM_018898 NP_061721 C/G L498V minus 24145291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4407 rs246074 PCDHAC1 56135 5 140288153 NM_031882 NP_114088 C/G L498V minus 611472 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4408 rs246074 PCDHAC1 56135 5 140288153 NM_031882 NP_114088 C/G L498V minus 2986036 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.45 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4409 rs246074 PCDHAC1 56135 5 140288153 NM_031882 NP_114088 C/G L498V minus 24145291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4410 rs246074 PCDHAC1 56135 5 140288153 NM_031882 NP_114088 C/G L498V minus 24145291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4411 rs246074 PCDHAC1 56135 5 140288153 NM_031882 NP_114088 C/G L498V minus 24145291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin alpha subfamily C, 1" 4412 rs246105 PJA2 9867 5 108700845 NM_014819 NP_055634 C/T A705T plus 1982242 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "by doubleHit,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 4413 rs246105 PJA2 9867 5 108700845 NM_014819 NP_055634 C/T A705T plus 24188586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 4414 rs246105 PJA2 9867 5 108700845 NM_014819 NP_055634 C/T A705T plus 24188586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 4415 rs246105 PJA2 9867 5 108700845 NM_014819 NP_055634 C/T A705T plus 24188586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 4416 rs246669 PCDHB4 56131 5 140483421 NM_018938 NP_061761 C/T T553A minus 24811105 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 5q31 protocadherin beta 4 4417 rs246679 PCDHB1 29930 5 140413573 NM_013340 NP_037472 C/G F778L minus 521335 1303 SEQUENOM CEPH CEPH (92) 92 0.03 98 by freq 5q31 protocadherin beta 1 4418 rs246703 PCDHB6 56130 5 140511930 NM_018939 NP_061762 C/G H636Q minus 1652768 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 by freq 5q31 protocadherin beta 6 4419 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 552176 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4420 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 552176 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4421 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 552176 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4422 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 552176 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.17 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4423 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 552176 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4424 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 24666978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4425 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 24666978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4426 rs250430 APBB3 10307 5 139921412 NM_006051 NP_006042 C/T C238R minus 24666978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4427 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 552176 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4428 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 552176 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4429 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 552176 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4430 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 552176 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.17 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4431 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 552176 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4432 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 24666978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4433 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 24666978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4434 rs250430 APBB3 10307 5 139921412 NM_133172 NP_573418 C/T C236R minus 24666978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4435 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 552176 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4436 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 552176 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4437 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 552176 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4438 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 552176 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.17 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4439 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 552176 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4440 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 24666978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4441 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 24666978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4442 rs250430 APBB3 10307 5 139921412 NM_133173 NP_573419 C/T C231R minus 24666978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4443 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 552176 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4444 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 552176 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4445 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 552176 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4446 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 552176 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.17 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4447 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 552176 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4448 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 24666978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4449 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 24666978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4450 rs250430 APBB3 10307 5 139921412 NM_133174 NP_573420 C/T C229R minus 24666978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 4451 rs251353 PCDHA9 9752 5 140208348 NM_014005 NP_054724 G/T S28R minus 545755 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 87 by freq 5q31 protocadherin alpha 9 4452 rs251353 PCDHA9 9752 5 140208348 NM_014005 NP_054724 G/T S28R minus 545755 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.25 87 by freq 5q31 protocadherin alpha 9 4453 rs251353 PCDHA9 9752 5 140208348 NM_014005 NP_054724 G/T S28R minus 545755 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 87 by freq 5q31 protocadherin alpha 9 4454 rs251353 PCDHA9 9752 5 140208348 NM_014005 NP_054724 G/T S28R minus 545755 1303 SEQUENOM CEPH CEPH (92) 92 0.44 87 by freq 5q31 protocadherin alpha 9 4455 rs251353 PCDHA9 9752 5 140208348 NM_031857 NP_114063 G/T S28R minus 545755 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 87 by freq 5q31 protocadherin alpha 9 4456 rs251353 PCDHA9 9752 5 140208348 NM_031857 NP_114063 G/T S28R minus 545755 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.25 87 by freq 5q31 protocadherin alpha 9 4457 rs251353 PCDHA9 9752 5 140208348 NM_031857 NP_114063 G/T S28R minus 545755 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 87 by freq 5q31 protocadherin alpha 9 4458 rs251353 PCDHA9 9752 5 140208348 NM_031857 NP_114063 G/T S28R minus 545755 1303 SEQUENOM CEPH CEPH (92) 92 0.44 87 by freq 5q31 protocadherin alpha 9 4459 rs251354 PCDHA9 9752 5 140209270 NM_014005 NP_054724 C/G L336V minus 531336 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4460 rs251354 PCDHA9 9752 5 140209270 NM_031857 NP_114063 C/G L336V minus 531336 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4461 rs251355 PCDHA9 9752 5 140209552 NM_014005 NP_054724 C/G G430R minus 608604 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4462 rs251355 PCDHA9 9752 5 140209552 NM_031857 NP_114063 C/G G430R minus 608604 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4463 rs251362 PCDHA10 56139 5 140217134 NM_018901 NP_061724 C/G S439R minus 502570 1303 SEQUENOM CEPH CEPH (92) 92 0.35 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4464 rs251362 PCDHA10 56139 5 140217134 NM_018901 NP_061724 C/G S439R minus 4919697 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.49 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4465 rs251362 PCDHA10 56139 5 140217134 NM_031859 NP_114065 C/G S439R minus 502570 1303 SEQUENOM CEPH CEPH (92) 92 0.35 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4466 rs251362 PCDHA10 56139 5 140217134 NM_031859 NP_114065 C/G S439R minus 4919697 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.49 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4467 rs251362 PCDHA10 56139 5 140217134 NM_031860 NP_114066 C/G S439R minus 502570 1303 SEQUENOM CEPH CEPH (92) 92 0.35 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4468 rs251362 PCDHA10 56139 5 140217134 NM_031860 NP_114066 C/G S439R minus 4919697 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.49 108 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4469 rs251364 PCDHA10 56139 5 140217571 NM_018901 NP_061724 A/C V585G minus 487243 1303 SEQUENOM CEPH CEPH (92) 92 0.23 119 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4470 rs251364 PCDHA10 56139 5 140217571 NM_031859 NP_114065 A/C V585G minus 487243 1303 SEQUENOM CEPH CEPH (92) 92 0.23 119 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 4471 rs252579 EMR4 326342 19 6923357 XM_377506 XP_377506 C/T R167H plus 328019 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 4472 rs252579 EMR4 326342 19 6923357 XM_377506 XP_377506 C/T R167H plus 24682498 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 4473 rs252579 EMR4 326342 19 6923357 XM_377506 XP_377506 C/T R167H plus 24682498 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 4474 rs252579 EMR4 326342 19 6923357 XM_377506 XP_377506 C/T R167H plus 24682498 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.15 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 4475 rs254460 TRIM7 81786 5 180555221 NM_203293 NP_976038 A/G G363S minus 5247534 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,freq,cluster" 5q35.3 tripartite motif-containing 7 4476 rs254460 TRIM7 81786 5 180555221 NM_203294 NP_976039 A/G G155S minus 5247534 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,freq,cluster" 5q35.3 tripartite motif-containing 7 4477 rs254460 TRIM7 81786 5 180555221 NM_203295 NP_976040 A/G G155S minus 5247534 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,freq,cluster" 5q35.3 tripartite motif-containing 7 4478 rs254460 TRIM7 81786 5 180555221 NM_203296 NP_976041 A/G G155S minus 5247534 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,freq,cluster" 5q35.3 tripartite motif-containing 7 4479 rs254460 TRIM7 81786 5 180555221 NM_203297 NP_976042 A/G G181S minus 5247534 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,freq,cluster" 5q35.3 tripartite motif-containing 7 4480 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 2228689 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.28 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4481 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 2228689 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 76 0.05 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4482 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 2228689 640 TSC-CSHL TSC_42_A TSC Asian (42) 48 0.1 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4483 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 2228689 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4484 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 2228689 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4485 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 23399732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4486 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 23399732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4487 rs259028 ZFYVE16 9765 5 79770053 NM_014733 NP_055548 C/T I598T plus 23399732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 4488 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4489 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4490 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4491 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4492 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4493 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4494 rs259358 RWDD3 25950 1 95421842 NM_015485 NP_056300 C/T V47A plus 807556 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p22.1 RWD domain containing 3 4495 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4496 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4497 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 8 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4498 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 46 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4499 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4500 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 540180 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4501 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 5013158 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4502 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 24536462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4503 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 24536462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4504 rs260462 ZNF544 27300 19 63465883 NM_014480 NP_055295 A/G Q700R plus 24536462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 zinc finger protein 544 4505 rs265771 CNTN6 27255 3 1346573 NM_014461 NP_055276 G/T A440S plus 1895836 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 123 "HapMap,submitter,freq,cluster" 3p26-p25 contactin 6 4506 rs265771 CNTN6 27255 3 1346573 NM_014461 NP_055276 G/T A440S plus 23171948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 3p26-p25 contactin 6 4507 rs265771 CNTN6 27255 3 1346573 NM_014461 NP_055276 G/T A440S plus 23171948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 3p26-p25 contactin 6 4508 rs265771 CNTN6 27255 3 1346573 NM_014461 NP_055276 G/T A440S plus 23171948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 3p26-p25 contactin 6 4509 rs266472 HIPK3 10114 11 33316957 NM_005734 NP_005725 C/T V474I minus 608425 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 87 "HapMap,doubleHit" 11p13 homeodomain interacting protein kinase 3 4510 rs266472 HIPK3 10114 11 33316957 NM_005734 NP_005725 C/T V474I minus 608425 1303 SEQUENOM CEPH CEPH (92) 92 1 87 "HapMap,doubleHit" 11p13 homeodomain interacting protein kinase 3 4511 rs266880 KLK3 354 19 56050283 NM_145864 NP_665863 C/G P87R plus 2041378 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 4512 rs266880 KLK3 354 19 56050283 NM_145864 NP_665863 C/G P87R plus 3234760 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.2 120 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 4513 rs267561 ITGA9 3680 3 37549955 NM_002207 NP_002198 C/T G507E minus 1490039 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,submitter,freq,cluster" 3p21.3 "integrin, alpha 9" 4514 rs267561 ITGA9 3680 3 37549955 NM_002207 NP_002198 C/T G507E minus 23257496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 3p21.3 "integrin, alpha 9" 4515 rs267561 ITGA9 3680 3 37549955 NM_002207 NP_002198 C/T G507E minus 23257496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 3p21.3 "integrin, alpha 9" 4516 rs267561 ITGA9 3680 3 37549955 NM_002207 NP_002198 C/T G507E minus 23257496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 3p21.3 "integrin, alpha 9" 4517 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 751296 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.06 123 "by cluster,freq" 1q21 annexin A9 4518 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 751296 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 1q21 annexin A9 4519 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 5281223 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by cluster,freq" 1q21 annexin A9 4520 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 24277601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1q21 annexin A9 4521 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 24277601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1q21 annexin A9 4522 rs267733 ANXA9 8416 1 147771909 NM_003568 NP_003559 A/G D159G plus 24277601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q21 annexin A9 4523 rs268671 PRX 57716 19 45593454 NM_181882 NP_870998 C/T V882A minus 599856 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 121 "by doubleHit,freq,cluster" 19q13.13-q13.2 periaxin 4524 rs268671 PRX 57716 19 45593454 NM_181882 NP_870998 C/T V882A minus 599856 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 121 "by doubleHit,freq,cluster" 19q13.13-q13.2 periaxin 4525 rs268671 PRX 57716 19 45593454 NM_181882 NP_870998 C/T V882A minus 599856 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,freq,cluster" 19q13.13-q13.2 periaxin 4526 rs268671 PRX 57716 19 45593454 NM_181882 NP_870998 C/T V882A minus 599856 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.19 121 "by doubleHit,freq,cluster" 19q13.13-q13.2 periaxin 4527 rs268671 PRX 57716 19 45593454 NM_181882 NP_870998 C/T V882A minus 599856 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 19q13.13-q13.2 periaxin 4528 rs268673 PRX 57716 19 45593336 NM_181882 NP_870998 A/G I921M minus 508093 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,submitter,freq,cluster" 19q13.13-q13.2 periaxin 4529 rs268673 PRX 57716 19 45593336 NM_181882 NP_870998 A/G I921M minus 508093 1303 SEQUENOM CEPH CEPH (92) 92 0.22 121 "HapMap,submitter,freq,cluster" 19q13.13-q13.2 periaxin 4530 rs268674 PRX 57716 19 45592705 NM_181882 NP_870998 A/G G1132R minus 528679 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 4531 rs268674 PRX 57716 19 45592705 NM_181882 NP_870998 A/G G1132R minus 4931211 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.02 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 4532 rs268674 PRX 57716 19 45592705 NM_181882 NP_870998 A/G G1132R minus 24595982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 4533 rs268674 PRX 57716 19 45592705 NM_181882 NP_870998 A/G G1132R minus 24595982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 4534 rs268674 PRX 57716 19 45592705 NM_181882 NP_870998 A/G G1132R minus 24595982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 4535 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 5605956 693 EGP_SNPS PDR90 NIHPDR 146 0.44 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4536 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 5605956 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4537 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 14702240 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4538 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 24577779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4539 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 24577779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4540 rs268687 SERTAD1 29950 19 45621203 NM_013376 NP_037508 A/G T31A minus 24577779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 19q13.1-q13.2 SERTA domain containing 1 4541 rs269868 DUOX2 50506 15 43179367 NM_014080 NP_054799 C/T S1067L minus 2032138 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 2 4542 rs269868 DUOX2 50506 15 43179367 NM_014080 NP_054799 C/T S1067L minus 23462795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 2 4543 rs269868 DUOX2 50506 15 43179367 NM_014080 NP_054799 C/T S1067L minus 23462795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 2 4544 rs269868 DUOX2 50506 15 43179367 NM_014080 NP_054799 C/T S1067L minus 23462795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 2 4545 rs270771 ILT10 79166 19 59912438 NM_024317 NP_077293 C/T A104V plus 597044 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.06 100 "HapMap,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 5" 4546 rs270771 ILT10 79166 19 59912438 NM_024317 NP_077293 C/T A104V plus 597044 1303 SEQUENOM CEPH CEPH (92) 92 0.21 100 "HapMap,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 5" 4547 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 1933208 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4548 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 1933208 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4549 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 1933208 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4550 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 1933208 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4551 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 1933208 1303 SEQUENOM CEPH CEPH (92) 92 0.3 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4552 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 3603022 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4553 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 3603022 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4554 rs272128 GPR148 344561 2 131321392 NM_207364 NP_997247 G/T P317T minus 3603022 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 100 "HapMap,submitter,freq" 2q21.2 G protein-coupled receptor 148 4555 rs272893 SLC22A4 6583 5 131690961 NM_003059 NP_003050 A/G I306T minus 16339642 1141 PHARMGKB_PMT PA129593643 552 0.37 121 "by doubleHit,freq,cluster" 5q31.1 "solute carrier family 22 (organic cation transporter), member 4" 4556 rs276937 DSC3 1825 18 26865059 NM_001941 NP_001932 A/T S78T minus 1934382 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 by freq 18q12.1 desmocollin 3 4557 rs276937 DSC3 1825 18 26865059 NM_001941 NP_001932 A/T S78T minus 24197210 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 by freq 18q12.1 desmocollin 3 4558 rs276937 DSC3 1825 18 26865059 NM_001941 NP_001932 A/T S78T minus 24197210 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 18q12.1 desmocollin 3 4559 rs276937 DSC3 1825 18 26865059 NM_001941 NP_001932 A/T S78T minus 24197210 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 18q12.1 desmocollin 3 4560 rs276937 DSC3 1825 18 26865059 NM_024423 NP_077741 A/T S78T minus 1934382 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 by freq 18q12.1 desmocollin 3 4561 rs276937 DSC3 1825 18 26865059 NM_024423 NP_077741 A/T S78T minus 24197210 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 by freq 18q12.1 desmocollin 3 4562 rs276937 DSC3 1825 18 26865059 NM_024423 NP_077741 A/T S78T minus 24197210 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 18q12.1 desmocollin 3 4563 rs276937 DSC3 1825 18 26865059 NM_024423 NP_077741 A/T S78T minus 24197210 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 18q12.1 desmocollin 3 4564 rs276938 DSC3 1825 18 26864986 NM_001941 NP_001932 A/G R102K minus 1934383 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,freq,cluster" 18q12.1 desmocollin 3 4565 rs276938 DSC3 1825 18 26864986 NM_024423 NP_077741 A/G R102K minus 1934383 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,freq,cluster" 18q12.1 desmocollin 3 4566 rs280528 CDC37 11140 19 10363285 NM_007065 NP_008996 C/T G360E plus 736423 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 19p13.2 CDC37 cell division cycle 37 homolog (S. cerevisiae) 4567 rs280528 CDC37 11140 19 10363285 NM_007065 NP_008996 C/T G360E plus 736423 1303 SEQUENOM CEPH CEPH (92) 92 1 98 HapMap 19p13.2 CDC37 cell division cycle 37 homolog (S. cerevisiae) 4568 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 365706 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4569 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 365706 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.42 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4570 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 1347572 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4571 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 1347572 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.45 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4572 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 1347572 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.3 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4573 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 1347572 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4574 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 3208995 738 YUSUKE JBIC-ALLELE Japanese (752) 1082 0.12 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4575 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 23373594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4576 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 23373594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4577 rs282129 GABRR2 2570 6 90024217 NM_002043 NP_002034 C/T T430M minus 23373594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 2" 4578 rs282414 RGNEF 64283 5 73272436 XM_371755 XP_371755 A/G S1644P minus 743533 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 4579 rs282414 RGNEF 64283 5 73272436 XM_371755 XP_371755 A/G S1644P minus 3217024 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 123 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 4580 rs282414 RGNEF 64283 5 73272436 XM_371755 XP_371755 A/G S1644P minus 24186172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 4581 rs282414 RGNEF 64283 5 73272436 XM_371755 XP_371755 A/G S1644P minus 24186172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 4582 rs282414 RGNEF 64283 5 73272436 XM_371755 XP_371755 A/G S1644P minus 24186172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 4583 rs283526 ATF5 22809 19 55127674 NM_012068 NP_036200 C/T P121L plus 2039819 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 "by doubleHit,freq,cluster" 19q13.3 activating transcription factor 5 4584 rs284662 B3GALT7 374907 19 46624115 NM_198540 NP_940942 A/G S137G minus 24570503 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.4 123 "by cluster,freq" 19q13.31 "UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7" 4585 rs284662 B3GALT7 374907 19 46624115 NM_198540 NP_940942 A/G S137G minus 24570503 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 19q13.31 "UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7" 4586 rs284662 B3GALT7 374907 19 46624115 NM_198540 NP_940942 A/G S137G minus 24570503 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.33 123 "by cluster,freq" 19q13.31 "UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7" 4587 rs285584 PDZRN4 29951 12 40232806 NM_013377 NP_037509 A/G G171S plus 627828 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 12q12 PDZ domain containing RING finger 4 4588 rs285584 PDZRN4 29951 12 40232806 NM_013377 NP_037509 A/G G171S plus 23342080 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 12q12 PDZ domain containing RING finger 4 4589 rs285584 PDZRN4 29951 12 40232806 NM_013377 NP_037509 A/G G171S plus 23342080 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12q12 PDZ domain containing RING finger 4 4590 rs285584 PDZRN4 29951 12 40232806 NM_013377 NP_037509 A/G G171S plus 23342080 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 12q12 PDZ domain containing RING finger 4 4591 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4592 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4593 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4594 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4595 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4596 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 902 AFFY Caucasian 24 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4597 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 903 AFFY Asian 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4598 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 904 AFFY CEPH 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4599 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 905 AFFY PDpanel 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4600 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 3040053 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4601 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 23684641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4602 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 23684641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4603 rs288326 FRZB 2487 2 183528842 NM_001463 NP_001454 A/G R200W plus 23684641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2qter frizzled-related protein 4604 rs288334 DNAJC10 54431 2 183448053 NM_018981 NP_061854 A/C H646Q minus 24151124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 4605 rs288334 DNAJC10 54431 2 183448053 NM_018981 NP_061854 A/C H646Q minus 24151124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 4606 rs288334 DNAJC10 54431 2 183448053 NM_018981 NP_061854 A/C H646Q minus 24151124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 4607 rs289723 NOD27 84166 16 55638029 NM_032206 NP_115582 G/T Q1105K minus 1420126 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 120 "HapMap,doubleHit,freq,cluster" 16q13 nucleotide-binding oligomerization domains 27 4608 rs291102 PIGR 5284 1 203494873 NM_002644 NP_002635 C/T A580V minus 1342427 1303 SEQUENOM CEPH CEPH (92) 92 0.07 100 "by doubleHit,submitter,freq,cluster" 1q31-q41 polymeric immunoglobulin receptor 4609 rs291102 PIGR 5284 1 203494873 NM_002644 NP_002635 C/T A580V minus 3211650 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.16 100 "by doubleHit,submitter,freq,cluster" 1q31-q41 polymeric immunoglobulin receptor 4610 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 1804774 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4611 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 1804774 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4612 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 4935044 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4613 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 23239379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4614 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 23239379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4615 rs291466 HIBCH 26275 2 191009981 NM_014362 NP_055177 A/G M1T plus 23239379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4616 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 1804774 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4617 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 1804774 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4618 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 4935044 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4619 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 23239379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4620 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 23239379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4621 rs291466 HIBCH 26275 2 191009981 NM_198047 NP_932164 A/G M1T plus 23239379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 4622 rs297054 OR5D14 219436 11 55320352 XM_166877 XP_166877 G/T S249A plus 609048 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit" 11q12.1 "olfactory receptor, family 5, subfamily D, member 14" 4623 rs297055 OR5D14 219436 11 55320476 XM_166877 XP_166877 C/T L290P plus 536293 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,doubleHit,freq" 11q12.1 "olfactory receptor, family 5, subfamily D, member 14" 4624 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4625 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4626 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4627 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4628 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4629 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 532884 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4630 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 24386122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4631 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 24386122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4632 rs298104 K6HF 9119 12 51104771 NM_004693 NP_004684 A/C S485R minus 24386122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4633 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 3217752 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4634 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 5366239 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4635 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 5366239 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4636 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 24386312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4637 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 24386312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4638 rs298109 K6HF 9119 12 51114085 NM_004693 NP_004684 A/G R91G minus 24386312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 cytokeratin type II 4639 rs299163 NALP11 204801 19 61013226 NM_145007 NP_659444 G/T A188S minus 24583560 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 4640 rs299163 NALP11 204801 19 61013226 NM_145007 NP_659444 G/T A188S minus 24583560 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 4641 rs299163 NALP11 204801 19 61013226 NM_145007 NP_659444 G/T A188S minus 24583560 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 4642 rs299284 HMMR 3161 5 162829228 NM_012484 NP_036616 C/T R92C plus 2402673 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4643 rs299284 HMMR 3161 5 162829228 NM_012484 NP_036616 C/T R92C plus 23331945 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4644 rs299284 HMMR 3161 5 162829228 NM_012484 NP_036616 C/T R92C plus 23331945 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4645 rs299284 HMMR 3161 5 162829228 NM_012484 NP_036616 C/T R92C plus 23331945 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4646 rs299284 HMMR 3161 5 162829228 NM_012485 NP_036617 C/T R77C plus 2402673 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4647 rs299284 HMMR 3161 5 162829228 NM_012485 NP_036617 C/T R77C plus 23331945 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4648 rs299284 HMMR 3161 5 162829228 NM_012485 NP_036617 C/T R77C plus 23331945 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4649 rs299284 HMMR 3161 5 162829228 NM_012485 NP_036617 C/T R77C plus 23331945 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4650 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 560525 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4651 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 560525 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4652 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 3228706 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.44 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4653 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 23940132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4654 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 23940132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4655 rs299290 HMMR 3161 5 162835094 NM_012484 NP_036616 C/T V368A plus 23940132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4656 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 560525 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4657 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 560525 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4658 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 3228706 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.44 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4659 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 23940132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4660 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 23940132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4661 rs299290 HMMR 3161 5 162835094 NM_012485 NP_036617 C/T V353A plus 23940132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4662 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 1317616 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4663 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 1317616 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4664 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 1317616 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4665 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 5157950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4666 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 5157950 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4667 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 23332087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4668 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 23332087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4669 rs299295 HMMR 3161 5 162842294 NM_012484 NP_036616 C/T A484V plus 23332087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4670 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 1317616 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4671 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 1317616 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4672 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 1317616 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4673 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 5157950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4674 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 5157950 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4675 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 23332087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4676 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 23332087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4677 rs299295 HMMR 3161 5 162842294 NM_012485 NP_036617 C/T A469V plus 23332087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 4678 rs302453 NALP4 147945 19 61082049 NM_134444 NP_604393 A/T Q925L plus 515538 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 100 "HapMap,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 4679 rs302453 NALP4 147945 19 61082049 NM_134444 NP_604393 A/T Q925L plus 515538 1303 SEQUENOM CEPH CEPH (92) 92 0.23 100 "HapMap,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 4680 rs302453 NALP4 147945 19 61082049 NM_134444 NP_604393 A/T Q925L plus 3233088 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 100 "HapMap,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 4681 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 1322888 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.28 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4682 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 1322888 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.38 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4683 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 1322888 640 TSC-CSHL TSC_42_A TSC Asian (42) 74 0.24 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4684 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 24689078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.45 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4685 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 24689078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4686 rs303997 NALP13 126204 19 61116255 NM_176810 NP_789780 C/T Q247R plus 24689078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by doubleHit,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 4687 rs305974 CYP2F1 1572 19 46319708 NM_000774 NP_000765 A/G D218N plus 1609735 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.33 113 "HapMap,freq" 19q13.2 "cytochrome P450, family 2, subfamily F, polypeptide 1" 4688 rs305974 CYP2F1 1572 19 46319708 NM_000774 NP_000765 A/G D218N plus 1609735 1303 SEQUENOM CEPH CEPH (92) 92 0.47 113 "HapMap,freq" 19q13.2 "cytochrome P450, family 2, subfamily F, polypeptide 1" 4689 rs306197 MIDORI 57538 15 83202263 NM_020778 NP_065829 A/G P1299L minus 518586 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 by freq 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 4690 rs306506 NALP8 126205 19 61151426 NM_176811 NP_789781 C/G V116L minus 24584584 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4691 rs306506 NALP8 126205 19 61151426 NM_176811 NP_789781 C/G V116L minus 24584584 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4692 rs306506 NALP8 126205 19 61151426 NM_176811 NP_789781 C/G V116L minus 24584584 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4693 rs306507 NALP8 126205 19 61151154 NM_176811 NP_789781 C/T P25L plus 24584571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4694 rs306507 NALP8 126205 19 61151154 NM_176811 NP_789781 C/T P25L plus 24584571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4695 rs306507 NALP8 126205 19 61151154 NM_176811 NP_789781 C/T P25L plus 24584571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 8" 4696 rs306547 DDX31 64794 9 132499968 NM_022779 NP_073616 C/T I799V plus 504735 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by cluster,freq" 9q34.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 4697 rs306548 DDX31 64794 9 132499835 NM_022779 NP_073616 C/T R843Q plus 495847 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 9q34.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 4698 rs307658 UBAP2 55833 9 33931759 NM_018449 NP_060919 A/G N606S minus 773675 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4699 rs307658 UBAP2 55833 9 33931759 NM_018449 NP_060919 A/G N606S minus 773675 1303 SEQUENOM CEPH CEPH (92) 92 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4700 rs307658 UBAP2 55833 9 33931759 NM_018449 NP_060919 A/G N606S minus 3213942 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.26 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4701 rs307658 UBAP2 55833 9 33931759 NM_020867 NP_065918 A/G N553S minus 773675 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4702 rs307658 UBAP2 55833 9 33931759 NM_020867 NP_065918 A/G N553S minus 773675 1303 SEQUENOM CEPH CEPH (92) 92 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4703 rs307658 UBAP2 55833 9 33931759 NM_020867 NP_065918 A/G N553S minus 3213942 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.26 121 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 4704 rs307692 UBAP2 55833 9 33917899 NM_018449 NP_060919 C/T A756V minus 1347252 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 9p13.2 ubiquitin associated protein 2 4705 rs307692 UBAP2 55833 9 33917899 NM_020867 NP_065918 C/T A703V minus 1347252 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 9p13.2 ubiquitin associated protein 2 4706 rs307821 FLT4 2324 5 179962919 NM_182925 NP_891555 G/T R1324L minus 1765465 1303 SEQUENOM CEPH CEPH (92) 92 0.12 100 by freq 5q34-q35 fms-related tyrosine kinase 4 4707 rs307826 FLT4 2324 5 179983609 NM_002020 NP_002011 A/G T494A minus 3019085 1303 SEQUENOM CEPH CEPH (92) 92 0.15 96 by freq 5q34-q35 fms-related tyrosine kinase 4 4708 rs307826 FLT4 2324 5 179983609 NM_182925 NP_891555 A/G T494A minus 3019085 1303 SEQUENOM CEPH CEPH (92) 92 0.15 96 by freq 5q34-q35 fms-related tyrosine kinase 4 4709 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 731523 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4710 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 731523 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.45 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4711 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 731523 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4712 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 731523 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4713 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 2225096 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4714 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 4920008 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.46 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4715 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 24621156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4716 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 24621156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4717 rs309559 CSPG2 1462 5 82869125 NM_004385 NP_004376 C/T K1516R minus 24621156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 4718 rs310632 PRIC285 85441 20 61667251 NM_033405 NP_208384 A/G H554R minus 8378779 1303 SEQUENOM CEPH CEPH (92) 92 0.18 121 "by cluster,freq" 20q13.33 peroxisomal proliferator-activated receptor A interacting complex 285 4719 rs310657 SRMS 6725 20 61644005 NM_080823 NP_543013 C/G V301L plus 566931 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 20q13.33 src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites 4720 rs310791 E2F7 144455 12 75952258 NM_203394 NP_976328 A/G F72L plus 492242 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 12q21.1 E2F transcription factor 7 4721 rs310791 E2F7 144455 12 75952258 NM_203394 NP_976328 A/G F72L plus 23379876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q21.1 E2F transcription factor 7 4722 rs310791 E2F7 144455 12 75952258 NM_203394 NP_976328 A/G F72L plus 23379876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12q21.1 E2F transcription factor 7 4723 rs310791 E2F7 144455 12 75952258 NM_203394 NP_976328 A/G F72L plus 23379876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 12q21.1 E2F transcription factor 7 4724 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 502756 901 AFFY AfAm 10 1 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4725 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 502756 902 AFFY Caucasian 20 0.15 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4726 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 502756 903 AFFY Asian 12 1 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4727 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 502756 904 AFFY CEPH 12 0.08 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4728 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 502756 905 AFFY PDpanel 46 0.02 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4729 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 24403096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4730 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 24403096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4731 rs310831 E2F7 144455 12 75921809 NM_203394 NP_976328 A/T H854Q plus 24403096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq" 12q21.1 E2F transcription factor 7 4732 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 5253350 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4733 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 16335927 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4734 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 16335927 902 AFFY Caucasian 22 0.41 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4735 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 16335927 903 AFFY Asian 12 0.33 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4736 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 16335927 904 AFFY CEPH 5 0.5 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4737 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 16335927 905 AFFY PDpanel 48 0.33 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4738 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 24402124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4739 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 24402124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4740 rs311685 DDX43 55510 6 74182609 NM_018665 NP_061135 C/T Q629R minus 24402124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4741 rs311686 DDX43 55510 6 74182596 NM_018665 NP_061135 C/T K625E minus 5384030 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4742 rs311686 DDX43 55510 6 74182596 NM_018665 NP_061135 C/T K625E minus 24402117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4743 rs311686 DDX43 55510 6 74182596 NM_018665 NP_061135 C/T K625E minus 24402117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4744 rs311686 DDX43 55510 6 74182596 NM_018665 NP_061135 C/T K625E minus 24402117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 6q12-q13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 4745 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 899412 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.25 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4746 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 899412 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4747 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 899412 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4748 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 899412 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.09 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4749 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 2754883 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4750 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 2754883 1303 SEQUENOM CEPH CEPH (92) 92 0.18 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4751 rs315675 ZCCHC4 29063 4 25040170 XM_376310 XP_376310 A/T L395H minus 4938901 738 YUSUKE JBIC-ALLELE Japanese (752) 718 0.15 121 "HapMap,submitter,freq,cluster" 4p15.31 "zinc finger, CCHC domain containing 4" 4752 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 839507 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4753 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 3217102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.12 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4754 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 8820718 869 PHARMGKB_PMT PA128164248 488 0.13 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4755 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 24018007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4756 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 24018007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4757 rs316019 SLC22A2 6582 6 160640693 NM_003058 NP_003049 G/T S270A minus 24018007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4758 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 839507 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4759 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 3217102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.12 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4760 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 8820718 869 PHARMGKB_PMT PA128164248 488 0.13 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4761 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 24018007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4762 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 24018007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4763 rs316019 SLC22A2 6582 6 160640693 NM_153191 NP_694861 G/T S270A minus 24018007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 2" 4764 rs318687 TM4-B 26526 19 11298480 NM_012466 NP_036598 C/G S233C minus 515742 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 116 "by doubleHit,freq,cluster" 19p13.2 tetraspanin TM4-B 4765 rs318687 TM4-B 26526 19 11298480 NM_012466 NP_036598 C/G S233C minus 515742 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 116 "by doubleHit,freq,cluster" 19p13.2 tetraspanin TM4-B 4766 rs318687 TM4-B 26526 19 11298480 NM_012466 NP_036598 C/G S233C minus 515742 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 116 "by doubleHit,freq,cluster" 19p13.2 tetraspanin TM4-B 4767 rs321937 ZNF610 162963 19 57561090 NM_173530 NP_775801 C/G R216P minus 4058648 901 AFFY AfAm 10 0.2 121 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 4768 rs321937 ZNF610 162963 19 57561090 NM_173530 NP_775801 C/G R216P minus 4058648 902 AFFY Caucasian 20 0.1 121 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 4769 rs321937 ZNF610 162963 19 57561090 NM_173530 NP_775801 C/G R216P minus 4058648 903 AFFY Asian 12 0.33 121 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 4770 rs321937 ZNF610 162963 19 57561090 NM_173530 NP_775801 C/G R216P minus 4058648 904 AFFY CEPH 12 0.17 121 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 4771 rs321937 ZNF610 162963 19 57561090 NM_173530 NP_775801 C/G R216P minus 4058648 905 AFFY PDpanel 44 0.27 121 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 4772 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4773 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 901 AFFY AfAm 10 0.3 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4774 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 902 AFFY Caucasian 24 1 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4775 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 903 AFFY Asian 12 0.17 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4776 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 904 AFFY CEPH 10 1 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4777 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 905 AFFY PDpanel 46 0.24 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4778 rs323344 TEX15 56154 8 30822067 NM_031271 NP_112561 A/C L1337V plus 3406216 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "HapMap,doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4779 rs323345 TEX15 56154 8 30822144 NM_031271 NP_112561 C/T N1311S plus 3457526 1303 SEQUENOM CEPH CEPH (92) 92 0.07 120 "by doubleHit,submitter,freq,cluster" 8p12 testis expressed sequence 15 4780 rs323346 TEX15 56154 8 30822973 NM_031271 NP_112561 C/T I1035V plus 413517 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 119 "by doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4781 rs323346 TEX15 56154 8 30822973 NM_031271 NP_112561 C/T I1035V plus 413517 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.38 119 "by doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4782 rs323346 TEX15 56154 8 30822973 NM_031271 NP_112561 C/T I1035V plus 413517 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 119 "by doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4783 rs323346 TEX15 56154 8 30822973 NM_031271 NP_112561 C/T I1035V plus 413517 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.18 119 "by doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4784 rs323346 TEX15 56154 8 30822973 NM_031271 NP_112561 C/T I1035V plus 3457525 1303 SEQUENOM CEPH CEPH (92) 92 0.15 119 "by doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4785 rs323347 TEX15 56154 8 30825766 NM_031271 NP_112561 A/G C104R plus 3406215 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4786 rs323347 TEX15 56154 8 30825766 NM_031271 NP_112561 A/G C104R plus 3406215 1303 SEQUENOM CEPH CEPH (92) 92 0.21 120 "HapMap,doubleHit,freq,cluster" 8p12 testis expressed sequence 15 4787 rs323562 CARD6 84674 5 40888917 NM_032587 NP_115976 C/T I576V minus 2148215 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 5p13.1 "caspase recruitment domain family, member 6" 4788 rs323562 CARD6 84674 5 40888917 NM_032587 NP_115976 C/T I576V minus 2148215 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 5p13.1 "caspase recruitment domain family, member 6" 4789 rs323844 MKLN1 4289 7 130587797 NM_013255 NP_037387 A/C C469G minus 493667 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4790 rs323844 MKLN1 4289 7 130587797 NM_013255 NP_037387 A/C C469G minus 493667 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4791 rs323844 MKLN1 4289 7 130587797 NM_013255 NP_037387 A/C C469G minus 1154544 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 HapMap 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4792 rs323844 MKLN1 4289 7 130587797 NM_013255 NP_037387 A/C C469G minus 1154544 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.06 86 HapMap 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4793 rs323844 MKLN1 4289 7 130587797 NM_013255 NP_037387 A/C C469G minus 1154544 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 HapMap 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4794 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 491764 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4795 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 491764 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4796 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 491764 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4797 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 1338935 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4798 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 5586220 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4799 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 5586220 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4800 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 5586220 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4801 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 5586220 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4802 rs323870 ADPRTL3 10039 3 51954225 NM_005485 NP_005476 A/G Q269R plus 5586220 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 3p22.2-p21.1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 4803 rs324136 AARSL 57505 6 44382989 NM_020745 NP_065796 A/G I339V minus 848292 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by doubleHit,freq,cluster" 6p21.1 alanyl-tRNA synthetase like 4804 rs324136 AARSL 57505 6 44382989 NM_020745 NP_065796 A/G I339V minus 23675611 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.1 alanyl-tRNA synthetase like 4805 rs324136 AARSL 57505 6 44382989 NM_020745 NP_065796 A/G I339V minus 23675611 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by doubleHit,freq,cluster" 6p21.1 alanyl-tRNA synthetase like 4806 rs324136 AARSL 57505 6 44382989 NM_020745 NP_065796 A/G I339V minus 23675611 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 6p21.1 alanyl-tRNA synthetase like 4807 rs324420 FAAH 2166 1 46582781 NM_001441 NP_001432 A/C P129T plus 587534 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 121 "HapMap,doubleHit,submitter,freq,cluster" 1p35-p34 fatty acid amide hydrolase 4808 rs324420 FAAH 2166 1 46582781 NM_001441 NP_001432 A/C P129T plus 587534 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.31 121 "HapMap,doubleHit,submitter,freq,cluster" 1p35-p34 fatty acid amide hydrolase 4809 rs324420 FAAH 2166 1 46582781 NM_001441 NP_001432 A/C P129T plus 587534 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.42 121 "HapMap,doubleHit,submitter,freq,cluster" 1p35-p34 fatty acid amide hydrolase 4810 rs324420 FAAH 2166 1 46582781 NM_001441 NP_001432 A/C P129T plus 587534 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 1p35-p34 fatty acid amide hydrolase 4811 rs324420 FAAH 2166 1 46582781 NM_001441 NP_001432 A/C P129T plus 587534 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 1p35-p34 fatty acid amide hydrolase 4812 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 2169783 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4813 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 2169783 902 AFFY Caucasian 22 0.45 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4814 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 2169783 903 AFFY Asian 10 0.4 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4815 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 2169783 904 AFFY CEPH 8 0.25 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4816 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 2169783 905 AFFY PDpanel 42 0.38 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4817 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 23197573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4818 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 23197573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4819 rs324981 GPR154 387129 7 34591353 NM_207172 NP_997055 A/T N107I plus 23197573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4820 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 2169783 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4821 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 2169783 902 AFFY Caucasian 22 0.45 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4822 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 2169783 903 AFFY Asian 10 0.4 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4823 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 2169783 904 AFFY CEPH 8 0.25 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4824 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 2169783 905 AFFY PDpanel 42 0.38 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4825 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 23197573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4826 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 23197573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4827 rs324981 GPR154 387129 7 34591353 NM_207173 NP_997056 A/T N107I plus 23197573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 4828 rs325609 OR52W1 120787 11 6177825 XM_062263 XP_062263 A/G T266A plus 23529893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 4829 rs325609 OR52W1 120787 11 6177825 XM_062263 XP_062263 A/G T266A plus 23529893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 4830 rs325609 OR52W1 120787 11 6177825 XM_062263 XP_062263 A/G T266A plus 23529893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 4831 rs325706 CNGA4 1262 11 6222145 XM_290552 XP_290552 A/T E553V minus 600789 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 87 HapMap 11p15.4 cyclic nucleotide gated channel alpha 4 4832 rs329003 PPP4R1 9989 18 9560320 NM_005134 NP_005125 A/G I453V minus 510318 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 87 "HapMap,submitter,freq" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 4833 rs329003 PPP4R1 9989 18 9560320 NM_005134 NP_005125 A/G I453V minus 510318 1303 SEQUENOM CEPH CEPH (92) 92 0.06 87 "HapMap,submitter,freq" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 4834 rs330150 DNAH3 55567 16 20958710 NM_017539 NP_060009 C/G I1565M plus 1963772 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 123 "HapMap,submitter,freq,cluster" 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 4835 rs330150 DNAH3 55567 16 20958710 NM_017539 NP_060009 C/G I1565M plus 23364974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.11 123 "HapMap,submitter,freq,cluster" 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 4836 rs330150 DNAH3 55567 16 20958710 NM_017539 NP_060009 C/G I1565M plus 23364974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "HapMap,submitter,freq,cluster" 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 4837 rs330150 DNAH3 55567 16 20958710 NM_017539 NP_060009 C/G I1565M plus 23364974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 "HapMap,submitter,freq,cluster" 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 4838 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 604855 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4839 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 604855 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4840 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 604855 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4841 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 604855 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4842 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 604855 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4843 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 3173228 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4844 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 23558404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4845 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 23558404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4846 rs330877 EMR1 2015 19 6847483 NM_001974 NP_001965 A/G A57T plus 23558404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4847 rs330880 EMR1 2015 19 6848464 NM_001974 NP_001965 C/G S140R plus 3173229 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 40 0.48 121 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4848 rs330880 EMR1 2015 19 6848464 NM_001974 NP_001965 C/G S140R plus 14712278 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 4849 rs331510 OR52K1 390036 11 4467163 XM_372347 XP_372347 A/G R153W minus 2856099 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.05 123 "by doubleHit,freq" 11p15.4 "olfactory receptor, family 52, subfamily K, member 1" 4850 rs331510 OR52K1 390036 11 4467163 XM_372347 XP_372347 A/G R153W minus 2856099 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.19 123 "by doubleHit,freq" 11p15.4 "olfactory receptor, family 52, subfamily K, member 1" 4851 rs331537 OR52K2 119774 11 4427852 XM_061676 XP_061676 C/T R236H minus 2703794 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 116 "HapMap,doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily K, member 2" 4852 rs334773 TRNT1 51095 3 3145792 NM_182916 NP_886552 A/G P23L minus 10089769 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 3p25.1 "tRNA nucleotidyl transferase, CCA-adding, 1" 4853 rs339445 DNAH5 1767 5 13997512 NM_001369 NP_001360 A/C H12Q plus 1804697 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 4854 rs339445 DNAH5 1767 5 13997512 NM_001369 NP_001360 A/C H12Q plus 1804697 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 4855 rs339445 DNAH5 1767 5 13997512 NM_001369 NP_001360 A/C H12Q plus 23982816 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 4856 rs339445 DNAH5 1767 5 13997512 NM_001369 NP_001360 A/C H12Q plus 23982816 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 4857 rs339445 DNAH5 1767 5 13997512 NM_001369 NP_001360 A/C H12Q plus 23982816 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 4858 rs340138 GPR108 56927 19 6688481 XM_290854 XP_290854 C/T Q36R plus 3032933 1303 SEQUENOM CEPH CEPH (92) 92 0.39 121 "by doubleHit,freq,cluster" 19p13.3 G protein-coupled receptor 108 4859 rs340138 GPR108 56927 19 6688481 XM_290854 XP_290854 C/T Q36R plus 4931567 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.01 121 "by doubleHit,freq,cluster" 19p13.3 G protein-coupled receptor 108 4860 rs340151 TMPRSS7 344805 3 113282535 XM_293599 XP_293599 A/T S704C plus 2013558 1303 SEQUENOM CEPH CEPH (92) 92 0.19 121 "by cluster,freq" 3q13.2 transmembrane serine protease 7 4861 rs343320 PLSCR1 5359 3 147717607 NM_021105 NP_066928 C/T H262Y minus 2256969 1303 SEQUENOM CEPH CEPH (92) 92 0.21 88 by freq 3q23 phospholipid scramblase 1 4862 rs344140 ShrmL 57619 4 78017341 NM_020859 NP_065910 C/G G278A plus 569841 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "by doubleHit,freq,cluster" 4q21.22 Shroom-related protein 4863 rs344141 ShrmL 57619 4 78017910 NM_020859 NP_065910 C/G P468A plus 1335241 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,freq,cluster" 4q21.22 Shroom-related protein 4864 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 507966 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4865 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 507966 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4866 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 507966 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4867 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 507966 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.06 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4868 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 882762 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4869 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 882762 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.05 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4870 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 882762 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4871 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 882762 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.06 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4872 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 1317737 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.12 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4873 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 1317737 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.02 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4874 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 1683165 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4875 rs344560 TNFSF14 8740 19 6616020 NM_003807 NP_003798 A/G K214E minus 4931579 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4876 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 507966 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4877 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 507966 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4878 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 507966 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4879 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 507966 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.06 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4880 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 882762 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4881 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 882762 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.05 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4882 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 882762 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4883 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 882762 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.06 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4884 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 1317737 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.12 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4885 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 1317737 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.02 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4886 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 1683165 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4887 rs344560 TNFSF14 8740 19 6616020 NM_172014 NP_742011 A/G K178E minus 4931579 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 121 "by doubleHit,freq,cluster" 19p13.3 "tumor necrosis factor (ligand) superfamily, member 14" 4888 rs345513 FRAS1 80144 4 79597242 NM_020875 NP_065926 C/T D687G minus 2710609 1303 SEQUENOM CEPH CEPH (92) 92 0.29 92 "by doubleHit,submitter,freq" 4q21.21 Fraser syndrome 1 4889 rs345513 FRAS1 80144 4 79597242 NM_206841 NP_996672 C/T D687G minus 2710609 1303 SEQUENOM CEPH CEPH (92) 92 0.29 92 "by doubleHit,submitter,freq" 4q21.21 Fraser syndrome 1 4890 rs349028 ZNF283 284349 19 49016448 XM_371174 XP_371174 C/T P24S plus 1746388 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 87 HapMap 19q13.32 zinc finger protein 283 4891 rs349028 ZNF283 284349 19 49016448 XM_371174 XP_371174 C/T P24S plus 1746388 1303 SEQUENOM CEPH CEPH (92) 92 1 87 HapMap 19q13.32 zinc finger protein 283 4892 rs351111 PRTN3 5657 19 795020 NM_002777 NP_002768 A/G V119I plus 1745256 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 102 "HapMap,submitter,freq" 19p13.3 "proteinase 3 (serine proteinase, neutrophil, Wegener granulomatosis autoantigen)" 4893 rs351111 PRTN3 5657 19 795020 NM_002777 NP_002768 A/G V119I plus 1745256 1303 SEQUENOM CEPH CEPH (92) 92 0.44 102 "HapMap,submitter,freq" 19p13.3 "proteinase 3 (serine proteinase, neutrophil, Wegener granulomatosis autoantigen)" 4894 rs351855 FGFR4 2264 5 176452849 NM_002011 NP_002002 C/T G388R minus 1663705 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 by freq 5q35.1-qter fibroblast growth factor receptor 4 4895 rs351855 FGFR4 2264 5 176452849 NM_213647 NP_998812 C/T G388R minus 1663705 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 by freq 5q35.1-qter fibroblast growth factor receptor 4 4896 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 566893 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4897 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 566893 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.05 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4898 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 566893 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4899 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 566893 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.05 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4900 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 566893 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4901 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 24081883 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4902 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 24081883 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4903 rs352493 SIRT6 51548 19 4131836 NM_016539 NP_057623 C/T S46N plus 24081883 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 19p13.3 sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae) 4904 rs353693 ANKRD24 170961 19 4168207 XM_114000 XP_114000 G/T S840A plus 487397 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,freq,cluster" 19p13.3 ankyrin repeat domain 24 4905 rs354478 NUP210 23225 3 13336287 NM_024923 NP_079199 C/T V1787M plus 1625203 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,submitter,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4906 rs354478 NUP210 23225 3 13336287 NM_024923 NP_079199 C/T V1787M plus 3213367 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.42 123 "by doubleHit,submitter,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4907 rs354478 NUP210 23225 3 13336287 NM_024923 NP_079199 C/T V1787M plus 24306490 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4908 rs354478 NUP210 23225 3 13336287 NM_024923 NP_079199 C/T V1787M plus 24306490 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4909 rs354478 NUP210 23225 3 13336287 NM_024923 NP_079199 C/T V1787M plus 24306490 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4910 rs354479 NUP210 23225 3 13336391 NM_024923 NP_079199 A/G L1752S plus 832136 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4911 rs354479 NUP210 23225 3 13336391 NM_024923 NP_079199 A/G L1752S plus 3213366 738 YUSUKE JBIC-ALLELE Japanese (752) 752 0.06 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4912 rs354479 NUP210 23225 3 13336391 NM_024923 NP_079199 A/G L1752S plus 24306499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4913 rs354479 NUP210 23225 3 13336391 NM_024923 NP_079199 A/G L1752S plus 24306499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4914 rs354479 NUP210 23225 3 13336391 NM_024923 NP_079199 A/G L1752S plus 24306499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 4915 rs357564 PTCH 5727 9 95289149 NM_000264 NP_000255 A/G P1315L plus 3176045 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.32 123 by freq 9q22.3 patched homolog (Drosophila) 4916 rs357564 PTCH 5727 9 95289149 NM_000264 NP_000255 A/G P1315L plus 24796376 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 by freq 9q22.3 patched homolog (Drosophila) 4917 rs358231 GBA3 57733 4 22496773 NM_020973 NP_066024 A/T *456Y minus 559584 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 121 "HapMap,doubleHit,freq,cluster" 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 4918 rs359974 IHH 3549 2 219755696 XM_050846 XP_050846 C/T M1I plus 548265 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 121 "HapMap,doubleHit,submitter,freq,cluster" 2q33-q35 Indian hedgehog homolog (Drosophila) 4919 rs359974 IHH 3549 2 219755696 XM_050846 XP_050846 C/T M1I plus 17685878 1303 SEQUENOM CEPH CEPH (92) 92 0.26 121 "HapMap,doubleHit,submitter,freq,cluster" 2q33-q35 Indian hedgehog homolog (Drosophila) 4920 rs360057 LEFTB 10637 1 222381298 NM_020997 NP_066277 G/T D322A plus 3063905 1303 SEQUENOM CEPH CEPH (92) 92 0.25 119 "by doubleHit,freq" 1q42.1 "left-right determination, factor B" 4921 rs361499 LGALS9 3965 17 22998533 NM_002308 NP_002299 A/G E258G plus 24811318 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 "by cluster,freq" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 4922 rs361499 LGALS9 3965 17 22998533 NM_009587 NP_033665 A/G E290G plus 24811318 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 "by cluster,freq" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 4923 rs361580 SUHW1 129025 22 21194099 NM_080740 NP_542778 G/T Y137S plus 458669 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4924 rs361580 SUHW1 129025 22 21194099 NM_080740 NP_542778 G/T Y137S plus 24805398 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4925 rs361666 SUHW1 129025 22 21193047 NM_080740 NP_542778 G/T R488S plus 24805399 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4926 rs361762 SUHW1 129025 22 21193051 NM_080740 NP_542778 C/G F486L plus 8290379 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,submitter,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4927 rs361959 SUHW1 129025 22 21194296 NM_080740 NP_542778 A/C K71N plus 459235 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4928 rs361959 SUHW1 129025 22 21194296 NM_080740 NP_542778 A/C K71N plus 24099001 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4929 rs361959 SUHW1 129025 22 21194296 NM_080740 NP_542778 A/C K71N plus 24099001 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4930 rs361959 SUHW1 129025 22 21194296 NM_080740 NP_542778 A/C K71N plus 24099001 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4931 rs362003 SUHW1 129025 22 21193677 NM_080740 NP_542778 C/T N278D plus 459309 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4932 rs362011 SUHW1 129025 22 21194102 NM_080740 NP_542778 C/T N136S plus 459319 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4933 rs362124 SUHW1 129025 22 21193763 NM_080740 NP_542778 C/G G249A plus 459493 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4934 rs362124 SUHW1 129025 22 21193763 NM_080740 NP_542778 C/G G249A plus 23597836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.33 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4935 rs362124 SUHW1 129025 22 21193763 NM_080740 NP_542778 C/G G249A plus 23597836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4936 rs362124 SUHW1 129025 22 21193763 NM_080740 NP_542778 C/G G249A plus 23597836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4937 rs362132 SUHW1 129025 22 21193772 NM_080740 NP_542778 C/T N246S plus 459508 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 4938 rs362691 RELN 5649 7 102845112 NM_005045 NP_005036 C/G L997V plus 3091353 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 7q22 reelin 4939 rs362691 RELN 5649 7 102845112 NM_005045 NP_005036 C/G L997V plus 3204546 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.1 123 "by doubleHit,freq,cluster" 7q22 reelin 4940 rs362691 RELN 5649 7 102845112 NM_005045 NP_005036 C/G L997V plus 24335075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 7q22 reelin 4941 rs362691 RELN 5649 7 102845112 NM_005045 NP_005036 C/G L997V plus 24335075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 7q22 reelin 4942 rs362691 RELN 5649 7 102845112 NM_005045 NP_005036 C/G L997V plus 24335075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 7q22 reelin 4943 rs362691 RELN 5649 7 102845112 NM_173054 NP_774959 C/G L997V plus 3091353 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 7q22 reelin 4944 rs362691 RELN 5649 7 102845112 NM_173054 NP_774959 C/G L997V plus 3204546 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.1 123 "by doubleHit,freq,cluster" 7q22 reelin 4945 rs362691 RELN 5649 7 102845112 NM_173054 NP_774959 C/G L997V plus 24335075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 7q22 reelin 4946 rs362691 RELN 5649 7 102845112 NM_173054 NP_774959 C/G L997V plus 24335075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 7q22 reelin 4947 rs362691 RELN 5649 7 102845112 NM_173054 NP_774959 C/G L997V plus 24335075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 7q22 reelin 4948 rs363294 PDZK8 118987 10 119033544 NM_173791 NP_776152 C/T R897Q plus 1467278 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by submitter,freq,cluster" 10q26.12 PDZ domain containing 8 4949 rs363294 PDZK8 118987 10 119033544 NM_173791 NP_776152 C/T R897Q plus 24568899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 10q26.12 PDZ domain containing 8 4950 rs363294 PDZK8 118987 10 119033544 NM_173791 NP_776152 C/T R897Q plus 24568899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 10q26.12 PDZ domain containing 8 4951 rs363294 PDZK8 118987 10 119033544 NM_173791 NP_776152 C/T R897Q plus 24568899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 10q26.12 PDZ domain containing 8 4952 rs363315 TRIK 338567 10 118959336 NM_181840 NP_862823 C/T S231P plus 24112052 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4953 rs363315 TRIK 338567 10 118959336 NM_181840 NP_862823 C/T S231P plus 24112052 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4954 rs363315 TRIK 338567 10 118959336 NM_181840 NP_862823 C/T S231P plus 24112052 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4955 rs363359 TRIK 338567 10 118959238 NM_181840 NP_862823 C/G A198G plus 23618721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,cluster" 10q26.12 TWIK-related spinal cord K+ channe 4956 rs363359 TRIK 338567 10 118959238 NM_181840 NP_862823 C/G A198G plus 23618721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,cluster" 10q26.12 TWIK-related spinal cord K+ channe 4957 rs363359 TRIK 338567 10 118959238 NM_181840 NP_862823 C/G A198G plus 23618721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,cluster" 10q26.12 TWIK-related spinal cord K+ channe 4958 rs363360 TRIK 338567 10 118959343 NM_181840 NP_862823 C/T A233V plus 23618740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4959 rs363360 TRIK 338567 10 118959343 NM_181840 NP_862823 C/T A233V plus 23618740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4960 rs363360 TRIK 338567 10 118959343 NM_181840 NP_862823 C/T A233V plus 23618740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q26.12 TWIK-related spinal cord K+ channe 4961 rs363504 GRIK1 2897 21 29847799 NM_000830 NP_000821 C/T L902S minus 4010646 634 PERLEGEN NCBI|NIHPDR NIHPDR 11 0.18 102 "by submitter,freq,cluster" 21q22.11 "glutamate receptor, ionotropic, kainate 1" 4962 rs363504 GRIK1 2897 21 29847799 NM_000830 NP_000821 C/T L902S minus 4010646 1303 SEQUENOM CEPH CEPH (92) 92 1 102 "by submitter,freq,cluster" 21q22.11 "glutamate receptor, ionotropic, kainate 1" 4963 rs363835 FBN1 2200 15 46510199 NM_000138 NP_000129 C/T P2278S minus 461303 527 OEFNER AUTOSOME Stanford Autosome Collection 2 0.5 102 by freq 15q21.1 fibrillin 1 (Marfan syndrome) 4964 rs363835 FBN1 2200 15 46510199 NM_000138 NP_000129 C/T P2278S minus 3176336 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 102 by freq 15q21.1 fibrillin 1 (Marfan syndrome) 4965 rs363853 FBN1 2200 15 46675781 NM_000138 NP_000129 C/T C177R minus 461321 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 79 HapMap 15q21.1 fibrillin 1 (Marfan syndrome) 4966 rs364637 FUT6 2528 19 5782891 NM_000150 NP_000141 A/C Q230K minus 1328938 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by doubleHit,freq" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 4967 rs364637 FUT6 2528 19 5782891 NM_000150 NP_000141 A/C Q230K minus 1328938 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.46 123 "by doubleHit,freq" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 4968 rs364637 FUT6 2528 19 5782891 NM_000150 NP_000141 A/C Q230K minus 1328938 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 123 "by doubleHit,freq" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 4969 rs364891 RNF144 9781 2 7087665 NM_014746 NP_055561 A/G T4A plus 23869370 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.2 123 "by cluster,freq" 2p25.2 ring finger protein 144 4970 rs364891 RNF144 9781 2 7087665 NM_014746 NP_055561 A/G T4A plus 23869370 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 2p25.2 ring finger protein 144 4971 rs364891 RNF144 9781 2 7087665 NM_014746 NP_055561 A/G T4A plus 23869370 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 2p25.2 ring finger protein 144 4972 rs365605 SLC22A1LS 5003 11 2877242 NM_007105 NP_009036 C/T G89D plus 1648519 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "by doubleHit,freq" 11p15.5 "solute carrier family 22 (organic cation transporter), member 1-like antisense" 4973 rs365745 ZNF221 7638 19 49163049 NM_013359 NP_037491 A/T S519T plus 463782 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 221 4974 rs365745 ZNF221 7638 19 49163049 NM_013359 NP_037491 A/T S519T plus 23554271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 221 4975 rs365745 ZNF221 7638 19 49163049 NM_013359 NP_037491 A/T S519T plus 23554271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 221 4976 rs365745 ZNF221 7638 19 49163049 NM_013359 NP_037491 A/T S519T plus 23554271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 221 4977 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 464211 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4978 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 464211 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4979 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 16338608 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4980 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 24709355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4981 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 24709355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4982 rs365990 MYH6 4624 14 22931651 NM_002471 NP_002462 A/G V1101A plus 24709355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 4983 rs366111 ZNF221 7638 19 49163163 NM_013359 NP_037491 A/G G557R plus 464439 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 19q13.2 zinc finger protein 221 4984 rs366111 ZNF221 7638 19 49163163 NM_013359 NP_037491 A/G G557R plus 23554282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by cluster,freq" 19q13.2 zinc finger protein 221 4985 rs366111 ZNF221 7638 19 49163163 NM_013359 NP_037491 A/G G557R plus 23554282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 19q13.2 zinc finger protein 221 4986 rs366111 ZNF221 7638 19 49163163 NM_013359 NP_037491 A/G G557R plus 23554282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2 zinc finger protein 221 4987 rs366439 EBAF 7044 1 222434413 NM_003240 NP_003231 A/G S92L plus 464983 1303 SEQUENOM CEPH CEPH (92) 46 0.5 98 "by cluster,freq" 1q42.1 "endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily)" 4988 rs366439 EBAF 7044 1 222434413 NM_003240 NP_003231 A/G S92L plus 3190436 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.25 98 "by cluster,freq" 1q42.1 "endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily)" 4989 rs367923 MKLN1 4289 7 130517467 NM_013255 NP_037387 G/T Q43P minus 467433 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4990 rs367923 MKLN1 4289 7 130517467 NM_013255 NP_037387 G/T Q43P minus 467433 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4991 rs367923 MKLN1 4289 7 130517467 NM_013255 NP_037387 G/T Q43P minus 467433 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4992 rs367923 MKLN1 4289 7 130517467 NM_013255 NP_037387 G/T Q43P minus 467433 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 4993 rs368844 HSPA6 3310 1 158309233 NM_002155 NP_002146 C/T R577Q minus 1323482 1303 SEQUENOM CEPH CEPH (92) 92 0.35 116 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 4994 rs369639 PCDHA9 9752 5 140210555 NM_014005 NP_054724 A/C K764T plus 11742726 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4995 rs369639 PCDHA9 9752 5 140210555 NM_031857 NP_114063 A/C K764T plus 11742726 1303 SEQUENOM CEPH CEPH (92) 92 0.32 120 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 9 4996 rs369909 OBSCN 84033 1 224827708 NM_052843 NP_443075 C/G L5269V minus 4982183 738 YUSUKE JBIC-ALLELE Japanese (752) 1260 0.29 121 "by doubleHit,freq,cluster" 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 4997 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 3100905 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 4998 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 3100905 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 4999 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 3252574 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 5000 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 23947367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 5001 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 23947367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 5002 rs369998 UNQ9217 167555 5 79851414 NM_205548 NP_991111 C/T I155T plus 23947367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 AASA9217 5003 rs370094 EMR1 2015 19 6855137 NM_001974 NP_001965 A/G A298V minus 3176822 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.27 120 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5004 rs370094 EMR1 2015 19 6855137 NM_001974 NP_001965 A/G A298V minus 10942093 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5005 rs370429 PCM1 5108 8 17893427 NM_006197 NP_006188 A/G T1543I minus 4092407 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 5006 rs370429 PCM1 5108 8 17893427 NM_006197 NP_006188 A/G T1543I minus 4092407 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 5007 rs370429 PCM1 5108 8 17893427 NM_006197 NP_006188 A/G T1543I minus 23980890 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 5008 rs370429 PCM1 5108 8 17893427 NM_006197 NP_006188 A/G T1543I minus 23980890 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 5009 rs370429 PCM1 5108 8 17893427 NM_006197 NP_006188 A/G T1543I minus 23980890 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,submitter,freq,cluster" 8p22-p21.3 pericentriolar material 1 5010 rs373496 TNFRSF17 608 16 11967664 NM_001192 NP_001183 C/T N81S minus 16341954 693 EGP_SNPS PDR90 NIHPDR 174 0.03 121 "by cluster,freq" 16p13.1 "tumor necrosis factor receptor superfamily, member 17" 5011 rs373496 TNFRSF17 608 16 11967664 NM_001192 NP_001183 C/T N81S minus 16728545 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "by cluster,freq" 16p13.1 "tumor necrosis factor receptor superfamily, member 17" 5012 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 476695 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5013 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 476695 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5014 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 3253042 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.18 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5015 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 23761444 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5016 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 23761444 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5017 rs373533 EMR1 2015 19 6870624 NM_001974 NP_001965 G/T K496Q minus 23761444 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.17 123 "HapMap,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5018 rs373572 RAD18 56852 3 8930389 NM_020165 NP_064550 A/G R302Q minus 2293973 885 TSC-CSHL HapMap-CEPH-30-trios 100 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25-p24 RAD18 homolog (S. cerevisiae) 5019 rs373572 RAD18 56852 3 8930389 NM_020165 NP_064550 A/G R302Q minus 2293973 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25-p24 RAD18 homolog (S. cerevisiae) 5020 rs373572 RAD18 56852 3 8930389 NM_020165 NP_064550 A/G R302Q minus 23886577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25-p24 RAD18 homolog (S. cerevisiae) 5021 rs373572 RAD18 56852 3 8930389 NM_020165 NP_064550 A/G R302Q minus 23886577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25-p24 RAD18 homolog (S. cerevisiae) 5022 rs373572 RAD18 56852 3 8930389 NM_020165 NP_064550 A/G R302Q minus 23886577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25-p24 RAD18 homolog (S. cerevisiae) 5023 rs373854 LILRA1 11024 19 59798677 NM_006863 NP_006854 C/T L220P plus 24788616 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 "by doubleHit,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1" 5024 rs376618 FGFR4 2264 5 176450403 NM_002011 NP_002002 A/G P136L minus 481897 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5025 rs376618 FGFR4 2264 5 176450403 NM_002011 NP_002002 A/G P136L minus 481897 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5026 rs376618 FGFR4 2264 5 176450403 NM_022963 NP_075252 A/G P136L minus 481897 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5027 rs376618 FGFR4 2264 5 176450403 NM_022963 NP_075252 A/G P136L minus 481897 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5028 rs376618 FGFR4 2264 5 176450403 NM_213647 NP_998812 A/G P136L minus 481897 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5029 rs376618 FGFR4 2264 5 176450403 NM_213647 NP_998812 A/G P136L minus 481897 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "HapMap,doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 5030 rs378971 HCG9 10255 6 30050962 NM_005844 NP_005835 C/T A19T minus 12682060 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5031 rs378971 HCG9 10255 6 30050962 NM_005844 NP_005835 C/T A19T minus 24796247 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5032 rs379147 OR1E1 8387 17 3247889 NM_003553 NP_003544 A/C F189C plus 486110 1303 SEQUENOM CEPH CEPH (92) 92 0.42 117 "by cluster,freq" 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5033 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 487020 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5034 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 487020 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5035 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 4938725 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5036 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 16335607 901 AFFY AfAm 12 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5037 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 16335607 902 AFFY Caucasian 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5038 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 16335607 903 AFFY Asian 4 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5039 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 16335607 904 AFFY CEPH 10 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5040 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 16335607 905 AFFY PDpanel 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5041 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 24000243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5042 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 24000243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5043 rs379707 FYB 2533 5 39155480 NM_001465 NP_001456 G/T V718F minus 24000243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5044 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 487020 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5045 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 487020 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5046 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 4938725 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5047 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 16335607 901 AFFY AfAm 12 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5048 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 16335607 902 AFFY Caucasian 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5049 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 16335607 903 AFFY Asian 4 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5050 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 16335607 904 AFFY CEPH 10 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5051 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 16335607 905 AFFY PDpanel 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5052 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 24000243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5053 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 24000243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5054 rs379707 FYB 2533 5 39155480 NM_199335 NP_955367 G/T V672F minus 24000243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.1 FYN binding protein (FYB-120/130) 5055 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 686 TSC-SANGER SC_12_A CORIELL African American (12) 12 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5056 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 8 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5057 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 12 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5058 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5059 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5060 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5061 rs379856 OR1E1 8387 17 3247671 NM_003553 NP_003544 C/T S262P minus 487270 1303 SEQUENOM CEPH CEPH (92) 92 0.47 80 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 5062 rs380585 KRTAP10-5 386680 21 44824336 NM_198694 NP_941967 A/C F183C plus 4019397 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.27 100 "by submitter,freq" 21q22.3 keratin associated protein 18-5 5063 rs381418 GBA 2629 1 152021078 NM_000157 NP_000148 G/T N227K minus 489860 1303 SEQUENOM CEPH CEPH (92) 92 0.2 106 by freq 1q21 "glucosidase, beta; acid (includes glucosylceramidase)" 5064 rs381427 GBA 2629 1 152021070 NM_000157 NP_000148 G/T V230G minus 489869 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 by freq 1q21 "glucosidase, beta; acid (includes glucosylceramidase)" 5065 rs382627 FCGR2A 2212 1 158300860 NM_021642 NP_067674 C/T L272P plus 16450684 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 5066 rs382627 FCGR2A 2212 1 158300860 NM_021642 NP_067674 C/T L272P plus 23841596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 5067 rs382627 FCGR2A 2212 1 158300860 NM_021642 NP_067674 C/T L272P plus 23841596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 5068 rs382627 FCGR2A 2212 1 158300860 NM_021642 NP_067674 C/T L272P plus 23841596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 5069 rs382789 KIRREL2 84063 19 41047435 NM_032123 NP_115499 A/G K591E plus 492167 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5070 rs382789 KIRREL2 84063 19 41047435 NM_032123 NP_115499 A/G K591E plus 492167 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5071 rs382789 KIRREL2 84063 19 41047435 NM_032123 NP_115499 A/G K591E plus 492167 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5072 rs382789 KIRREL2 84063 19 41047435 NM_032123 NP_115499 A/G K591E plus 1941048 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5073 rs382789 KIRREL2 84063 19 41047435 NM_032123 NP_115499 A/G K591E plus 1941048 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5074 rs382789 KIRREL2 84063 19 41047435 NM_199179 NP_954648 A/G K541E plus 492167 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5075 rs382789 KIRREL2 84063 19 41047435 NM_199179 NP_954648 A/G K541E plus 492167 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5076 rs382789 KIRREL2 84063 19 41047435 NM_199179 NP_954648 A/G K541E plus 492167 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5077 rs382789 KIRREL2 84063 19 41047435 NM_199179 NP_954648 A/G K541E plus 1941048 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5078 rs382789 KIRREL2 84063 19 41047435 NM_199179 NP_954648 A/G K541E plus 1941048 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5079 rs382789 KIRREL2 84063 19 41047435 NM_199180 NP_954649 A/G K591E plus 492167 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5080 rs382789 KIRREL2 84063 19 41047435 NM_199180 NP_954649 A/G K591E plus 492167 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5081 rs382789 KIRREL2 84063 19 41047435 NM_199180 NP_954649 A/G K591E plus 492167 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5082 rs382789 KIRREL2 84063 19 41047435 NM_199180 NP_954649 A/G K591E plus 1941048 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5083 rs382789 KIRREL2 84063 19 41047435 NM_199180 NP_954649 A/G K591E plus 1941048 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5084 rs383369 LILRB2 10288 19 59475942 NM_005874 NP_005865 C/T H20R plus 5464668 1303 SEQUENOM CEPH CEPH (92) 92 0.24 108 "by doubleHit,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2" 5085 rs386056 LILRB2 10288 19 59474731 NM_005874 NP_005865 A/G V235M minus 497545 1303 SEQUENOM CEPH CEPH (92) 92 0.21 120 "by cluster,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2" 5086 rs386730 HSPA6 3310 1 158308393 NM_002155 NP_002146 A/C T297K plus 2856821 1303 SEQUENOM CEPH CEPH (92) 92 0.18 92 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5087 rs388218 HSPA6 3310 1 158308894 NM_002155 NP_002146 A/C S464I minus 501113 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5088 rs388685 ZNF45 7596 19 49110520 NM_003425 NP_003416 C/G P303R plus 2986364 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1424 0.26 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5089 rs388685 ZNF45 7596 19 49110520 NM_003425 NP_003416 C/G P303R plus 24685147 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5090 rs388685 ZNF45 7596 19 49110520 NM_003425 NP_003416 C/G P303R plus 24685147 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5091 rs388685 ZNF45 7596 19 49110520 NM_003425 NP_003416 C/G P303R plus 24685147 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5092 rs388685 ZNF45 7596 19 49110520 NM_003425 NP_003416 C/G P303R plus 24811382 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5093 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 2995829 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.27 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5094 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 2995829 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.47 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5095 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 2995829 640 TSC-CSHL TSC_42_A TSC Asian (42) 72 0.07 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5096 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 2995829 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5097 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 24685149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5098 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 24685149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5099 rs388706 ZNF45 7596 19 49110533 NM_003425 NP_003416 C/T T299A plus 24685149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5100 rs390659 RDS 5961 6 42774142 NM_000322 NP_000313 C/G Q304E plus 505147 1303 SEQUENOM CEPH CEPH (92) 92 0.06 121 "by cluster,freq" 6p21.2-p12.3 "retinal degeneration, slow" 5101 rs391125 HSPA6 3310 1 158309379 NM_002155 NP_002146 A/G T626A plus 24811390 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 by freq 1q23 heat shock 70kDa protein 6 (HSP70B') 5102 rs393027 HSPA6 3310 1 158308330 NM_002155 NP_002146 C/T L276P plus 1329258 1303 SEQUENOM CEPH CEPH (92) 92 0.3 89 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5103 rs394558 TATDN2 9797 3 10277172 XM_376203 XP_376203 A/G V256I plus 4078742 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25.3 TatD DNase domain containing 1 5104 rs394558 TATDN2 9797 3 10277172 XM_376203 XP_376203 A/G V256I plus 4078742 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25.3 TatD DNase domain containing 1 5105 rs394558 TATDN2 9797 3 10277172 XM_376203 XP_376203 A/G V256I plus 23241729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25.3 TatD DNase domain containing 1 5106 rs394558 TATDN2 9797 3 10277172 XM_376203 XP_376203 A/G V256I plus 23241729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25.3 TatD DNase domain containing 1 5107 rs394558 TATDN2 9797 3 10277172 XM_376203 XP_376203 A/G V256I plus 23241729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 3p25.3 TatD DNase domain containing 1 5108 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 2993255 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5109 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 2993255 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 58 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5110 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 2993255 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5111 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 2993255 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 320 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5112 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 2993255 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5113 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 24558206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5114 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 24558206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5115 rs394732 BCAS1 8537 20 52108595 NM_003657 NP_003648 G/T Q24K plus 24558206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 5116 rs394965 HSPA6 3310 1 158309389 NM_002155 NP_002146 A/G R629H plus 24815439 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 1q23 heat shock 70kDa protein 6 (HSP70B') 5117 rs395127 WBSCR20C 260294 7 71864616 NM_032158 NP_115534 A/G A90V plus 512448 1303 SEQUENOM CEPH CEPH (92) 92 0.3 102 by freq 7q11.23 Williams Beuren syndrome chromosome region 20C 5118 rs395127 WBSCR20C 260294 7 71864616 NM_148936 NP_683738 A/G A90V plus 512448 1303 SEQUENOM CEPH CEPH (92) 92 0.3 102 by freq 7q11.23 Williams Beuren syndrome chromosome region 20C 5119 rs395127 WBSCR20C 260294 7 71864616 NM_148980 NP_683881 A/G A90V plus 512448 1303 SEQUENOM CEPH CEPH (92) 92 0.3 102 by freq 7q11.23 Williams Beuren syndrome chromosome region 20C 5120 rs396716 FCGR3A 2214 1 158327651 NM_000569 NP_000560 C/T Y194H minus 515045 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.01 120 "HapMap,doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5121 rs396716 FCGR3A 2214 1 158327651 NM_000569 NP_000560 C/T Y194H minus 515045 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 "HapMap,doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5122 rs396991 FCGR3A 2214 1 158327597 NM_000569 NP_000560 G/T F212V minus 515482 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5123 rs396991 FCGR3A 2214 1 158327597 NM_000569 NP_000560 G/T F212V minus 3176083 619 WICVAR MITOGPOP6 CORIELL Mixed 14 1 121 "by doubleHit,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5124 rs397205 SYNCOILIN 81493 1 32829603 NM_030786 NP_110413 C/T A66T plus 1335668 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.03 92 by freq 1p34.3-p33 intermediate filament protein syncoilin 5125 rs397205 SYNCOILIN 81493 1 32829603 NM_030786 NP_110413 C/T A66T plus 1335668 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 1 92 by freq 1p34.3-p33 intermediate filament protein syncoilin 5126 rs397205 SYNCOILIN 81493 1 32829603 NM_030786 NP_110413 C/T A66T plus 1335668 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 1 92 by freq 1p34.3-p33 intermediate filament protein syncoilin 5127 rs397205 SYNCOILIN 81493 1 32829603 NM_030786 NP_110413 C/T A66T plus 1335668 1303 SEQUENOM CEPH CEPH (92) 92 0.03 92 by freq 1p34.3-p33 intermediate filament protein syncoilin 5128 rs398607 GALC 2581 14 87477641 NM_000153 NP_000144 A/G I546T plus 518098 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,submitter,freq,cluster" 14q31 galactosylceramidase (Krabbe disease) 5129 rs398607 GALC 2581 14 87477641 NM_000153 NP_000144 A/G I546T plus 24591017 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 14q31 galactosylceramidase (Krabbe disease) 5130 rs398607 GALC 2581 14 87477641 NM_000153 NP_000144 A/G I546T plus 24591017 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 14q31 galactosylceramidase (Krabbe disease) 5131 rs398607 GALC 2581 14 87477641 NM_000153 NP_000144 A/G I546T plus 24591017 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 14q31 galactosylceramidase (Krabbe disease) 5132 rs398825 KRTAP4-10 85285 17 36594233 NM_033060 NP_149049 A/G A115T minus 518434 1303 SEQUENOM CEPH CEPH (92) 92 0.06 121 by freq 17q12-q21 keratin associated protein 4-10 5133 rs398829 ADAMTS2 9509 5 178567278 NM_014244 NP_055059 A/G V245I minus 4919913 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.36 121 "by doubleHit,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 5134 rs398829 ADAMTS2 9509 5 178567278 NM_014244 NP_055059 A/G V245I minus 17097424 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by doubleHit,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 5135 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 2986363 738 YUSUKE JBIC-ALLELE Japanese (752) 706 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5136 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 2995828 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5137 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 2995828 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5138 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 24197170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5139 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 24197170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5140 rs399098 ZNF45 7596 19 49110664 NM_003425 NP_003416 A/G R255K minus 24197170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5141 rs399145 PLAUR 5329 19 48861362 NM_002659 NP_002650 A/G T86A minus 5607548 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.19 123 "by submitter,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 5142 rs399145 PLAUR 5329 19 48861362 NM_002659 NP_002650 A/G T86A minus 5607548 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 5143 rs399145 PLAUR 5329 19 48861362 NM_002659 NP_002650 A/G T86A minus 23609083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 5144 rs399145 PLAUR 5329 19 48861362 NM_002659 NP_002650 A/G T86A minus 23609083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 5145 rs399145 PLAUR 5329 19 48861362 NM_002659 NP_002650 A/G T86A minus 23609083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 5146 rs400106 ZNF440 126070 19 11804697 NM_152357 NP_689570 A/G S569N plus 4061936 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,freq,cluster" 19p13.2 zinc finger protein 440 5147 rs400835 HSPA6 3310 1 158307787 NM_002155 NP_002146 A/G R95Q plus 521880 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 5148 rs400835 HSPA6 3310 1 158307787 NM_002155 NP_002146 A/G R95Q plus 521880 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.33 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 5149 rs400835 HSPA6 3310 1 158307787 NM_002155 NP_002146 A/G R95Q plus 521880 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 1 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 5150 rs400835 HSPA6 3310 1 158307787 NM_002155 NP_002146 A/G R95Q plus 521880 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 5151 rs402680 AOC3 8639 17 38257119 NM_003734 NP_003725 C/T R78Q minus 24811429 1303 SEQUENOM CEPH CEPH (92) 184 0.3 123 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5152 rs403016 FCGR3A 2214 1 158331477 NM_000569 NP_000560 C/G R72S plus 24788817 1303 SEQUENOM CEPH CEPH (92) 184 0.45 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5153 rs403016 FCGR3A 2214 1 158331477 NM_000569 NP_000560 C/G R72S plus 24796109 1303 SEQUENOM CEPH CEPH (92) 184 0.35 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5154 rs404299 KIRREL2 84063 19 41041592 NM_032123 NP_115499 A/G A170T plus 1941042 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 121 "HapMap,doubleHit,freq,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5155 rs404299 KIRREL2 84063 19 41041592 NM_199179 NP_954648 A/G A120T plus 1941042 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 121 "HapMap,doubleHit,freq,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5156 rs404299 KIRREL2 84063 19 41041592 NM_199180 NP_954649 A/G A170T plus 1941042 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 121 "HapMap,doubleHit,freq,cluster" 19q13.13 kin of IRRE like 2 (Drosophila) 5157 rs404970 KRT6B 3854 12 51132024 NM_005555 NP_005546 A/G I36V minus 24811434 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 by freq 12q12-q13 keratin 6B 5158 rs407664 HSPA6 3310 1 158308915 NM_002155 NP_002146 A/G R471H plus 533190 1303 SEQUENOM CEPH CEPH (92) 92 0.33 80 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5159 rs407731 ZNF45 7596 19 49109917 NM_003425 NP_003416 A/G R504K minus 1315616 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5160 rs407731 ZNF45 7596 19 49109917 NM_003425 NP_003416 A/G R504K minus 24685139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5161 rs407731 ZNF45 7596 19 49109917 NM_003425 NP_003416 A/G R504K minus 24685139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5162 rs407731 ZNF45 7596 19 49109917 NM_003425 NP_003416 A/G R504K minus 24685139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide) 5163 rs408038 AOC3 8639 17 38257397 NM_003734 NP_003725 C/T V171M minus 24796534 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5164 rs408038 AOC3 8639 17 38257397 NM_003734 NP_003725 C/T V171M minus 24811443 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5165 rs409093 GPR43 2867 19 40633088 NM_005306 NP_005297 A/T L211H plus 535598 1303 SEQUENOM CEPH CEPH (92) 92 0.22 87 by freq 19q13.1 G protein-coupled receptor 43 5166 rs409782 RBM11 54033 21 14518643 NM_144770 NP_658983 G/T L116V plus 14393276 1303 SEQUENOM CEPH CEPH (92) 92 0.31 119 "by doubleHit,freq,cluster" 21q11 RNA binding motif protein 11 5167 rs412750 PCM1 5108 8 17840662 NM_006197 NP_006188 A/G N159S plus 541750 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq,cluster" 8p22-p21.3 pericentriolar material 1 5168 rs414352 RP1 6101 8 55704066 NM_006269 NP_006260 C/T S1691P plus 544417 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5169 rs414352 RP1 6101 8 55704066 NM_006269 NP_006260 C/T S1691P plus 544417 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,doubleHit,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5170 rs414352 RP1 6101 8 55704066 NM_006269 NP_006260 C/T S1691P plus 24077580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5171 rs414352 RP1 6101 8 55704066 NM_006269 NP_006260 C/T S1691P plus 24077580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5172 rs414352 RP1 6101 8 55704066 NM_006269 NP_006260 C/T S1691P plus 24077580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5173 rs414408 COL1A2 1278 7 93686590 NM_000089 NP_000080 C/T A483V plus 544512 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 80 by freq 7q22.1 "collagen, type I, alpha 2" 5174 rs414408 COL1A2 1278 7 93686590 NM_000089 NP_000080 C/T A483V plus 544512 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.16 80 by freq 7q22.1 "collagen, type I, alpha 2" 5175 rs414408 COL1A2 1278 7 93686590 NM_000089 NP_000080 C/T A483V plus 544512 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 80 by freq 7q22.1 "collagen, type I, alpha 2" 5176 rs414408 COL1A2 1278 7 93686590 NM_000089 NP_000080 C/T A483V plus 544512 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 7q22.1 "collagen, type I, alpha 2" 5177 rs414528 MDS032 55850 19 17191060 NM_018467 NP_060937 A/G L154S minus 1975258 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19p13.12 uncharacterized hematopoietic stem/progenitor cells protein MDS032 5178 rs414528 MDS032 55850 19 17191060 NM_018467 NP_060937 A/G L154S minus 1975258 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 19p13.12 uncharacterized hematopoietic stem/progenitor cells protein MDS032 5179 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5180 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5181 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 2 1 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5182 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 190 0.25 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5183 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.21 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5184 rs415793 BAZ2B 29994 2 160007809 NM_013450 NP_038478 A/G S1828N minus 546755 1303 SEQUENOM CEPH CEPH (92) 92 0.27 100 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 5185 rs415895 SWAP70 23075 11 9726138 NM_015055 NP_055870 C/G Q505E minus 546926 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by doubleHit,freq" 11p15 SWAP-70 protein 5186 rs415996 LIPL3 340654 10 90477699 XM_291663 XP_291663 A/C F105L minus 24541879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 3" 5187 rs415996 LIPL3 340654 10 90477699 XM_291663 XP_291663 A/C F105L minus 24541879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 3" 5188 rs415996 LIPL3 340654 10 90477699 XM_291663 XP_291663 A/C F105L minus 24541879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 3" 5189 rs417012 PAPPA 5069 9 115996019 NM_002581 NP_002572 G/T S5I plus 548739 1303 SEQUENOM CEPH CEPH (92) 92 0.06 80 by freq 9q33.2 pregnancy-associated plasma protein A 5190 rs417707 HSPA6 3310 1 158308509 NM_002155 NP_002146 A/C V336F minus 549902 1303 SEQUENOM CEPH CEPH (92) 92 0.14 80 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5191 rs418570 COL1A2 1278 7 93704317 NM_000089 NP_000080 G/T Q1354H plus 551320 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 7q22.1 "collagen, type I, alpha 2" 5192 rs418570 COL1A2 1278 7 93704317 NM_000089 NP_000080 G/T Q1354H plus 1542401 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 7q22.1 "collagen, type I, alpha 2" 5193 rs418570 COL1A2 1278 7 93704317 NM_000089 NP_000080 G/T Q1354H plus 1542401 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 7q22.1 "collagen, type I, alpha 2" 5194 rs418570 COL1A2 1278 7 93704317 NM_000089 NP_000080 G/T Q1354H plus 1542401 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 7q22.1 "collagen, type I, alpha 2" 5195 rs419164 DLEC1 9940 3 38079087 NM_005106 NP_005097 A/T Q295H plus 552317 1303 SEQUENOM CEPH CEPH (92) 92 0.17 80 by freq 3p22-p21.3 deleted in lung and esophageal cancer 1 5196 rs419164 DLEC1 9940 3 38079087 NM_007335 NP_031361 A/T Q295H plus 552317 1303 SEQUENOM CEPH CEPH (92) 92 0.17 80 by freq 3p22-p21.3 deleted in lung and esophageal cancer 1 5197 rs419164 DLEC1 9940 3 38079087 NM_007336 NP_031362 A/T Q295H plus 552317 1303 SEQUENOM CEPH CEPH (92) 92 0.17 80 by freq 3p22-p21.3 deleted in lung and esophageal cancer 1 5198 rs419164 DLEC1 9940 3 38079087 NM_007337 NP_031363 A/T Q295H plus 552317 1303 SEQUENOM CEPH CEPH (92) 92 0.17 80 by freq 3p22-p21.3 deleted in lung and esophageal cancer 1 5199 rs419164 DLEC1 9940 3 38079087 NM_007338 NP_031364 A/T Q295H plus 552317 1303 SEQUENOM CEPH CEPH (92) 92 0.17 80 by freq 3p22-p21.3 deleted in lung and esophageal cancer 1 5200 rs421427 COMMD5 28991 8 146047321 NM_014066 NP_054785 C/G Q69H minus 556151 1303 SEQUENOM CEPH CEPH (92) 92 0.08 87 by freq 8q24-qter COMM domain containing 5 5201 rs422640 HCG9 10255 6 30050984 NM_005844 NP_005835 C/G S26T minus 12682061 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5202 rs422640 HCG9 10255 6 30050984 NM_005844 NP_005835 C/G S26T minus 23305110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5203 rs422640 HCG9 10255 6 30050984 NM_005844 NP_005835 C/G S26T minus 23305110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.25 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5204 rs422640 HCG9 10255 6 30050984 NM_005844 NP_005835 C/G S26T minus 23305110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5205 rs422640 HCG9 10255 6 30050984 NM_005844 NP_005835 C/G S26T minus 24814412 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 5206 rs423333 RGNEF 64283 5 73254710 XM_371755 XP_371755 C/T P1628L plus 2235421 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 120 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 5207 rs423333 RGNEF 64283 5 73254710 XM_371755 XP_371755 C/T P1628L plus 4935662 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.18 120 "HapMap,doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 5208 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 564439 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.06 123 by freq 13q34 "RAB20, member RAS oncogene family" 5209 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 564439 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 123 by freq 13q34 "RAB20, member RAS oncogene family" 5210 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 564439 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 by freq 13q34 "RAB20, member RAS oncogene family" 5211 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 564439 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 1 123 by freq 13q34 "RAB20, member RAS oncogene family" 5212 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 564439 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 13q34 "RAB20, member RAS oncogene family" 5213 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 23591591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 13q34 "RAB20, member RAS oncogene family" 5214 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 23591591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 13q34 "RAB20, member RAS oncogene family" 5215 rs426453 RAB20 55647 13 109974317 NM_017817 NP_060287 C/T N134S plus 23591591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q34 "RAB20, member RAS oncogene family" 5216 rs426938 THAP7 80764 22 19679524 NM_030573 NP_085050 C/G A115P plus 8015536 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by cluster,freq" 22q11.2 THAP domain containing 7 5217 rs426938 THAP7 80764 22 19679524 NM_030573 NP_085050 C/G A115P plus 24796985 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 "by cluster,freq" 22q11.2 THAP domain containing 7 5218 rs428073 JIK 51347 12 117145471 NM_016281 NP_057365 C/T S47N plus 1994738 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 121 "HapMap,freq,cluster" 12q STE20-like kinase 5219 rs428371 KRTAP4-3 85290 17 36577497 XM_497545 XP_497545 A/G P115S plus 21392421 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 "HapMap,doubleHit" 17q12-q21 keratin associated protein 4-3 5220 rs428785 ADAMTS1 9510 21 27138466 NM_006988 NP_008919 C/G A210P plus 568349 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 21q21.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1" 5221 rs428785 ADAMTS1 9510 21 27138466 NM_006988 NP_008919 C/G A210P plus 24024745 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 21q21.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1" 5222 rs428785 ADAMTS1 9510 21 27138466 NM_006988 NP_008919 C/G A210P plus 24024745 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 21q21.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1" 5223 rs428785 ADAMTS1 9510 21 27138466 NM_006988 NP_008919 C/G A210P plus 24024745 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 21q21.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1" 5224 rs428888 FCGR3A 2214 1 158331341 NM_000569 NP_000560 C/T D118N plus 5518768 1303 SEQUENOM CEPH CEPH (92) 92 0.38 116 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5225 rs429358 APOE 348 19 50103781 NM_000041 NP_000032 C/T C130R plus 870163 563 DEBNICK MDECODE-1 European-Americans 48 0.12 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 5226 rs429358 APOE 348 19 50103781 NM_000041 NP_000032 C/T C130R plus 870163 564 DEBNICK MDECODE-2 Finnish 48 0.23 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 5227 rs429358 APOE 348 19 50103781 NM_000041 NP_000032 C/T C130R plus 870163 565 DEBNICK MDECODE-3 African-American 48 0.1 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 5228 rs429358 APOE 348 19 50103781 NM_000041 NP_000032 C/T C130R plus 870163 566 DEBNICK MDECODE-4 Mayan Amerindians from Mexico 48 0.1 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 5229 rs429358 APOE 348 19 50103781 NM_000041 NP_000032 C/T C130R plus 12568607 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1857 0.15 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein E 5230 rs430554 SNF1LK 150094 21 43661983 NM_173354 NP_775490 A/G A615V plus 571239 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by doubleHit,freq,cluster" 21q22.3 SNF1-like kinase 5231 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 571422 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5232 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 571422 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.44 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5233 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 571422 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.21 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5234 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 571422 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 80 0.29 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5235 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 1998866 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5236 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 23418331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5237 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 23418331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5238 rs430665 U2AF1L1 7310 5 112256566 NM_005083 NP_005074 C/T S444N minus 23418331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5239 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 577623 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5240 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 577623 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.25 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5241 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 577623 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5242 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 577623 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.44 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5243 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 3235004 738 YUSUKE JBIC-ALLELE Japanese (752) 1080 0.28 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5244 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 3255020 506 NCBI NIHPDR NIHPDR 86 0.4 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5245 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 16343724 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.2 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5246 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 16343724 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.37 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5247 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 16343724 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5248 rs434473 ALOX12 239 17 6845658 NM_000697 NP_000688 A/G N322S plus 16343724 1303 SEQUENOM CEPH CEPH (92) 92 0.23 120 "HapMap,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 5249 rs435590 ZNF221 7638 19 49162503 NM_013359 NP_037491 C/G A337P minus 579451 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by submitter,cluster" 19q13.2 zinc finger protein 221 5250 rs437014 KRT6B 3854 12 51129003 NM_005555 NP_005546 A/G I365V minus 581776 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 6B 5251 rs437014 KRT6B 3854 12 51129003 NM_005555 NP_005546 A/G I365V minus 581776 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.35 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 6B 5252 rs437014 KRT6B 3854 12 51129003 NM_005555 NP_005546 A/G I365V minus 581776 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.42 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 6B 5253 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 582044 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 26 0.46 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5254 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 582044 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 26 0.35 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5255 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 2986698 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.34 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5256 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 12692013 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5257 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 12692013 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5258 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 23936914 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5259 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 23936914 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5260 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 23936914 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5261 rs437179 SKIV2L 6499 6 32036993 NM_006929 NP_008860 G/T M214L minus 24796285 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 "HapMap,doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5262 rs438096 HDAC5 10014 17 39526324 NM_005474 NP_005465 C/T R137Q plus 583599 1303 SEQUENOM CEPH CEPH (92) 92 0.06 80 by freq 17q21 histone deacetylase 5 5263 rs438096 HDAC5 10014 17 39526324 NM_139205 NP_631944 C/T R137Q plus 583599 1303 SEQUENOM CEPH CEPH (92) 92 0.06 80 by freq 17q21 histone deacetylase 5 5264 rs438287 AOC3 8639 17 38257835 NM_003734 NP_003725 A/G Y317H minus 583942 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5265 rs438287 AOC3 8639 17 38257835 NM_003734 NP_003725 A/G Y317H minus 583942 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5266 rs438287 AOC3 8639 17 38257835 NM_003734 NP_003725 A/G Y317H minus 5494071 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5267 rs438766 SIM1 6492 6 101003980 NM_005068 NP_005059 A/G L175F plus 3060752 1303 SEQUENOM CEPH CEPH (92) 92 0.44 96 by freq 6q16.3-q21 single-minded homolog 1 (Drosophila) 5268 rs438999 SKIV2L 6499 6 32036285 NM_006929 NP_008860 C/T Q151R minus 2986699 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.09 123 "by doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5269 rs438999 SKIV2L 6499 6 32036285 NM_006929 NP_008860 C/T Q151R minus 23326563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5270 rs438999 SKIV2L 6499 6 32036285 NM_006929 NP_008860 C/T Q151R minus 23326563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5271 rs438999 SKIV2L 6499 6 32036285 NM_006929 NP_008860 C/T Q151R minus 23326563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5272 rs438999 SKIV2L 6499 6 32036285 NM_006929 NP_008860 C/T Q151R minus 24796284 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5273 rs439676 ZNF221 7638 19 49162260 NM_013359 NP_037491 C/T C256R plus 586244 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 19q13.2 zinc finger protein 221 5274 rs441827 NALP4 147945 19 61061001 NM_134444 NP_604393 C/T A144T minus 24583858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 5275 rs441827 NALP4 147945 19 61061001 NM_134444 NP_604393 C/T A144T minus 24583858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 5276 rs441827 NALP4 147945 19 61061001 NM_134444 NP_604393 C/T A144T minus 24583858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 5277 rs443082 FCGR3A 2214 1 158327683 NM_000569 NP_000560 A/G G183D minus 591980 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5278 rs443082 FCGR3A 2214 1 158327683 NM_000569 NP_000560 A/G G183D minus 24820795 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5279 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 592938 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.25 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5280 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 592938 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.29 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5281 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 592938 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.24 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5282 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 592938 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.18 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5283 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 592938 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5284 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 3173226 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.44 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5285 rs443658 EMR1 2015 19 6854920 NM_001974 NP_001965 C/T N254S minus 3232596 738 YUSUKE JBIC-ALLELE Japanese (752) 745 0.5 120 "HapMap,doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5286 rs444772 RP1 6101 8 55701610 NM_006269 NP_006260 A/G R872H plus 594770 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,submitter,freq,cluster" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5287 rs444772 RP1 6101 8 55701610 NM_006269 NP_006260 A/G R872H plus 594770 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,submitter,freq,cluster" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5288 rs444772 RP1 6101 8 55701610 NM_006269 NP_006260 A/G R872H plus 3194791 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.37 123 "HapMap,submitter,freq,cluster" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5289 rs446014 KIRREL2 84063 19 41039918 NM_032123 NP_115499 A/C R19S plus 596837 1303 SEQUENOM CEPH CEPH (92) 92 1 87 by doubleHit 19q13.13 kin of IRRE like 2 (Drosophila) 5290 rs446014 KIRREL2 84063 19 41039918 NM_199179 NP_954648 A/C R19S plus 596837 1303 SEQUENOM CEPH CEPH (92) 92 1 87 by doubleHit 19q13.13 kin of IRRE like 2 (Drosophila) 5291 rs446014 KIRREL2 84063 19 41039918 NM_199180 NP_954649 A/C R19S plus 596837 1303 SEQUENOM CEPH CEPH (92) 92 1 87 by doubleHit 19q13.13 kin of IRRE like 2 (Drosophila) 5292 rs446227 RP1 6101 8 55704003 NM_006269 NP_006260 A/G A1670T plus 597189 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5293 rs446227 RP1 6101 8 55704003 NM_006269 NP_006260 A/G A1670T plus 597189 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5294 rs446227 RP1 6101 8 55704003 NM_006269 NP_006260 A/G A1670T plus 24077575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5295 rs446227 RP1 6101 8 55704003 NM_006269 NP_006260 A/G A1670T plus 24077575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5296 rs446227 RP1 6101 8 55704003 NM_006269 NP_006260 A/G A1670T plus 24077575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,submitter,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 5297 rs447017 HTF9C 27037 22 18474712 NM_182984 NP_892029 C/G S602R plus 598509 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 85 "HapMap,doubleHit,freq" 22q11.21 HpaII tiny fragments locus 9C 5298 rs447017 HTF9C 27037 22 18474712 NM_182984 NP_892029 C/G S602R plus 598509 1303 SEQUENOM CEPH CEPH (92) 92 0.08 85 "HapMap,doubleHit,freq" 22q11.21 HpaII tiny fragments locus 9C 5299 rs447017 HTF9C 27037 22 18474712 NM_182984 NP_892029 C/G S602R plus 869537 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 85 "HapMap,doubleHit,freq" 22q11.21 HpaII tiny fragments locus 9C 5300 rs447017 HTF9C 27037 22 18474712 NM_182984 NP_892029 C/G S602R plus 869537 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.09 85 "HapMap,doubleHit,freq" 22q11.21 HpaII tiny fragments locus 9C 5301 rs447017 HTF9C 27037 22 18474712 NM_182984 NP_892029 C/G S602R plus 869537 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 85 "HapMap,doubleHit,freq" 22q11.21 HpaII tiny fragments locus 9C 5302 rs448012 FLT4 2324 5 179978950 NM_002020 NP_002011 C/G H890Q plus 600171 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 by freq 5q34-q35 fms-related tyrosine kinase 4 5303 rs448012 FLT4 2324 5 179978950 NM_182925 NP_891555 C/G H890Q plus 600171 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 by freq 5q34-q35 fms-related tyrosine kinase 4 5304 rs448740 FCGR3A 2214 1 158331391 NM_000569 NP_000560 C/T S101N plus 5523031 1303 SEQUENOM CEPH CEPH (92) 92 0.31 108 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 5305 rs448921 ZNF155 7711 19 49192601 NM_003445 NP_003436 A/G R251H plus 3091278 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 19q13.2-q13.32 zinc finger protein 155 (pHZ-96) 5306 rs448921 ZNF155 7711 19 49192601 NM_198089 NP_932355 A/G R251H plus 3091278 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 19q13.2-q13.32 zinc finger protein 155 (pHZ-96) 5307 rs449407 PCDHA8 56140 5 140202247 NM_018911 NP_061734 G/T T386N minus 602556 1303 SEQUENOM CEPH CEPH (92) 92 0.21 103 by freq 5q31 protocadherin alpha 8 5308 rs449407 PCDHA8 56140 5 140202247 NM_031856 NP_114062 G/T T386N minus 602556 1303 SEQUENOM CEPH CEPH (92) 92 0.21 103 by freq 5q31 protocadherin alpha 8 5309 rs449643 SKIV2L 6499 6 32044658 NM_006929 NP_008860 A/G A1071V minus 602955 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by cluster,freq" 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 5310 rs450046 PRODH 5625 22 17275558 NM_016335 NP_057419 C/T R521Q plus 7993762 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 22q11.21 proline dehydrogenase (oxidase) 1 5311 rs450046 PRODH 5625 22 17275558 NM_016335 NP_057419 C/T R521Q plus 23788056 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 22q11.21 proline dehydrogenase (oxidase) 1 5312 rs450046 PRODH 5625 22 17275558 NM_016335 NP_057419 C/T R521Q plus 23788056 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 22q11.21 proline dehydrogenase (oxidase) 1 5313 rs450046 PRODH 5625 22 17275558 NM_016335 NP_057419 C/T R521Q plus 23788056 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 22q11.21 proline dehydrogenase (oxidase) 1 5314 rs450363 HSPA6 3310 1 158308843 NM_002155 NP_002146 G/T G447V plus 604152 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 5315 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5316 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5317 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.25 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5318 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.35 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5319 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.4 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5320 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 605510 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5321 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 24346271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5322 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 24346271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5323 rs451195 PPIC 5480 5 122387539 NM_000943 NP_000934 C/T N190S plus 24346271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq" 5q23.2 peptidylprolyl isomerase C (cyclophilin C) 5324 rs451571 CGI-09 51605 20 5871204 NM_015939 NP_057023 C/T E299G plus 3071126 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,cluster" 20p13 CGI-09 protein 5325 rs452004 HSPA6 3310 1 158309217 NM_002155 NP_002146 C/T M572V minus 606800 1303 SEQUENOM CEPH CEPH (92) 92 0.02 80 by freq 1q23 heat shock 70kDa protein 6 (HSP70B') 5326 rs454301 ZNF221 7638 19 49162029 NM_013359 NP_037491 A/T F179I minus 610605 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 19q13.2 zinc finger protein 221 5327 rs455527 CPNE7 27132 16 88171502 NM_014427 NP_055242 A/G F77L minus 612673 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.1 100 "HapMap,freq,cluster" 16q24.3 copine VII 5328 rs455527 CPNE7 27132 16 88171502 NM_014427 NP_055242 A/G F77L minus 612673 1303 SEQUENOM CEPH CEPH (92) 92 0.03 100 "HapMap,freq,cluster" 16q24.3 copine VII 5329 rs455527 CPNE7 27132 16 88171502 NM_014427 NP_055242 A/G F77L minus 3206854 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.31 100 "HapMap,freq,cluster" 16q24.3 copine VII 5330 rs455527 CPNE7 27132 16 88171502 NM_153636 NP_705900 A/G F77L minus 612673 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.1 100 "HapMap,freq,cluster" 16q24.3 copine VII 5331 rs455527 CPNE7 27132 16 88171502 NM_153636 NP_705900 A/G F77L minus 612673 1303 SEQUENOM CEPH CEPH (92) 92 0.03 100 "HapMap,freq,cluster" 16q24.3 copine VII 5332 rs455527 CPNE7 27132 16 88171502 NM_153636 NP_705900 A/G F77L minus 3206854 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.31 100 "HapMap,freq,cluster" 16q24.3 copine VII 5333 rs455863 IL17RE 132014 3 9931279 NM_153482 NP_705615 A/G R381Q plus 23246551 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 3p25.3 interleukin 17 receptor E 5334 rs455863 IL17RE 132014 3 9931279 NM_153482 NP_705615 A/G R381Q plus 23246551 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 3p25.3 interleukin 17 receptor E 5335 rs455863 IL17RE 132014 3 9931279 NM_153482 NP_705615 A/G R381Q plus 23246551 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 3p25.3 interleukin 17 receptor E 5336 rs457857 EMR1 2015 19 6864811 NM_001974 NP_001965 A/G I424V plus 3173230 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.09 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5337 rs457857 EMR1 2015 19 6864811 NM_001974 NP_001965 A/G I424V plus 14695843 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5338 rs457857 EMR1 2015 19 6864811 NM_001974 NP_001965 A/G I424V plus 23761420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5339 rs457857 EMR1 2015 19 6864811 NM_001974 NP_001965 A/G I424V plus 23761420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5340 rs457857 EMR1 2015 19 6864811 NM_001974 NP_001965 A/G I424V plus 23761420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5341 rs457947 ADAMTS5 11096 21 27260169 NM_007038 NP_008969 C/G G138A plus 2857357 1303 SEQUENOM CEPH CEPH (92) 92 0.11 100 by freq 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 5342 rs458017 REV3L 5980 6 111802784 NM_002912 NP_002903 C/T Y1078C plus 617419 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5343 rs458017 REV3L 5980 6 111802784 NM_002912 NP_002903 C/T Y1078C plus 4479764 506 NCBI NIHPDR NIHPDR 138 0.08 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5344 rs458017 REV3L 5980 6 111802784 NM_002912 NP_002903 C/T Y1078C plus 23497123 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5345 rs458017 REV3L 5980 6 111802784 NM_002912 NP_002903 C/T Y1078C plus 23497123 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5346 rs458017 REV3L 5980 6 111802784 NM_002912 NP_002903 C/T Y1078C plus 23497123 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5347 rs458273 MKLN1 4289 7 130587878 NM_013255 NP_037387 C/G D496H minus 617898 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5348 rs458273 MKLN1 4289 7 130587878 NM_013255 NP_037387 C/G D496H minus 617898 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5349 rs458273 MKLN1 4289 7 130587878 NM_013255 NP_037387 C/G D496H minus 617898 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5350 rs458273 MKLN1 4289 7 130587878 NM_013255 NP_037387 C/G D496H minus 617898 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5351 rs459102 U2AF1L1 7310 5 112256664 NM_005083 NP_005074 G/T Q477K minus 1998865 1303 SEQUENOM CEPH CEPH (92) 92 0.26 106 "by doubleHit,submitter,freq" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 5352 rs459552 APC 324 5 112204655 NM_000038 NP_000029 A/T V1822D minus 620343 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq,cluster" 5q21-q22 adenomatosis polyposis coli 5353 rs459552 APC 324 5 112204655 NM_000038 NP_000029 A/T V1822D minus 3177080 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 123 "by doubleHit,submitter,freq,cluster" 5q21-q22 adenomatosis polyposis coli 5354 rs459552 APC 324 5 112204655 NM_000038 NP_000029 A/T V1822D minus 23991403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 5q21-q22 adenomatosis polyposis coli 5355 rs459552 APC 324 5 112204655 NM_000038 NP_000029 A/T V1822D minus 23991403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 5q21-q22 adenomatosis polyposis coli 5356 rs459552 APC 324 5 112204655 NM_000038 NP_000029 A/T V1822D minus 23991403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 5q21-q22 adenomatosis polyposis coli 5357 rs460897 HF1 3075 1 193447976 NM_000186 NP_000177 A/G S1191L minus 5262522 1303 SEQUENOM CEPH CEPH (92) 92 0.33 108 "by doubleHit,freq" 1q32 H factor 1 (complement) 5358 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 624296 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.15 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5359 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 624296 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.45 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5360 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 624296 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 22 0.18 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5361 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 624296 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.22 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5362 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 3253041 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.18 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5363 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 24682398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5364 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 24682398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.3 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5365 rs461645 EMR1 2015 19 6870753 NM_001974 NP_001965 C/T I539V minus 24682398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.19 123 "by doubleHit,submitter,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5366 rs462779 REV3L 5980 6 111802580 NM_002912 NP_002903 C/T T1146I minus 626446 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,freq,cluster" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5367 rs462779 REV3L 5980 6 111802580 NM_002912 NP_002903 C/T T1146I minus 4479749 506 NCBI NIHPDR NIHPDR 144 0.41 123 "by doubleHit,freq,cluster" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5368 rs462779 REV3L 5980 6 111802580 NM_002912 NP_002903 C/T T1146I minus 24038973 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5369 rs462779 REV3L 5980 6 111802580 NM_002912 NP_002903 C/T T1146I minus 24038973 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5370 rs462779 REV3L 5980 6 111802580 NM_002912 NP_002903 C/T T1146I minus 24038973 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 5371 rs463312 TUBB1 81027 20 57031365 NM_030773 NP_110400 A/C Q43P plus 627436 1303 SEQUENOM CEPH CEPH (92) 92 0.07 80 by freq 20q13.32 "tubulin, beta 1" 5372 rs465223 KIFC1 3833 6 33467694 XM_371813 XP_371813 C/G S107T plus 2136268 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.36 123 "HapMap,doubleHit,freq" 6p21.3 kinesin family member C1 5373 rs465223 KIFC1 3833 6 33467694 XM_371813 XP_371813 C/G S107T plus 2136268 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,freq" 6p21.3 kinesin family member C1 5374 rs465223 KIFC1 3833 6 33467694 XM_371813 XP_371813 C/G S107T plus 24653616 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq" 6p21.3 kinesin family member C1 5375 rs465223 KIFC1 3833 6 33467694 XM_371813 XP_371813 C/G S107T plus 24653616 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq" 6p21.3 kinesin family member C1 5376 rs465223 KIFC1 3833 6 33467694 XM_371813 XP_371813 C/G S107T plus 24653616 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq" 6p21.3 kinesin family member C1 5377 rs466096 MKLN1 4289 7 130579958 NM_013255 NP_037387 G/T L374I minus 632618 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5378 rs466096 MKLN1 4289 7 130579958 NM_013255 NP_037387 G/T L374I minus 632618 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5379 rs466096 MKLN1 4289 7 130579958 NM_013255 NP_037387 G/T L374I minus 632618 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5380 rs466096 MKLN1 4289 7 130579958 NM_013255 NP_037387 G/T L374I minus 632618 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 7q32 "muskelin 1, intracellular mediator containing kelch motifs" 5381 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 633988 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5382 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 633988 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5383 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 3173224 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.24 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5384 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 24682381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5385 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 24682381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5386 rs466876 EMR1 2015 19 6864707 NM_001974 NP_001965 A/G T389M minus 24682381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 5387 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 3177585 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5388 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 4018552 634 PERLEGEN NCBI|NIHPDR NIHPDR 10 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5389 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 10988417 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5390 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 16335148 901 AFFY AfAm 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5391 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 16335148 902 AFFY Caucasian 24 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5392 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 16335148 903 AFFY Asian 12 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5393 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 16335148 904 AFFY CEPH 10 1 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5394 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 16335148 905 AFFY PDpanel 21 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5395 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 23651803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5396 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 23651803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5397 rs469390 MX1 4599 21 41739800 NM_002462 NP_002453 A/G V379I plus 23651803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 5398 rs470035 LARGE 9215 22 32371113 NM_004737 NP_004728 C/G R68G plus 640287 493 SC SC-POP1 UK Caucasians 40 0.03 80 by freq 22q12.3 like-glycosyltransferase 5399 rs470035 LARGE 9215 22 32371113 NM_004737 NP_004728 C/G R68G plus 640287 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 22q12.3 like-glycosyltransferase 5400 rs470035 LARGE 9215 22 32371113 NM_133642 NP_598397 C/G R68G plus 640287 493 SC SC-POP1 UK Caucasians 40 0.03 80 by freq 22q12.3 like-glycosyltransferase 5401 rs470035 LARGE 9215 22 32371113 NM_133642 NP_598397 C/G R68G plus 640287 1303 SEQUENOM CEPH CEPH (92) 92 1 80 by freq 22q12.3 like-glycosyltransferase 5402 rs470117 CPT1B 1375 22 49300097 NM_004377 NP_004368 A/G E531K minus 640370 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5403 rs470117 CPT1B 1375 22 49300097 NM_004377 NP_004368 A/G E531K minus 640370 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5404 rs470117 CPT1B 1375 22 49300097 NM_004377 NP_004368 A/G E531K minus 640370 1303 SEQUENOM CEPH CEPH (92) 93 0.47 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5405 rs470117 CPT1B 1375 22 49300097 NM_004377 NP_004368 A/G E531K minus 3203446 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.5 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5406 rs470117 CPT1B 1375 22 49300097 NM_152245 NP_689451 A/G E531K minus 640370 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5407 rs470117 CPT1B 1375 22 49300097 NM_152245 NP_689451 A/G E531K minus 640370 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5408 rs470117 CPT1B 1375 22 49300097 NM_152245 NP_689451 A/G E531K minus 640370 1303 SEQUENOM CEPH CEPH (92) 93 0.47 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5409 rs470117 CPT1B 1375 22 49300097 NM_152245 NP_689451 A/G E531K minus 3203446 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.5 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5410 rs470117 CPT1B 1375 22 49300097 NM_152246 NP_689452 A/G E531K minus 640370 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5411 rs470117 CPT1B 1375 22 49300097 NM_152246 NP_689452 A/G E531K minus 640370 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5412 rs470117 CPT1B 1375 22 49300097 NM_152246 NP_689452 A/G E531K minus 640370 1303 SEQUENOM CEPH CEPH (92) 93 0.47 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5413 rs470117 CPT1B 1375 22 49300097 NM_152246 NP_689452 A/G E531K minus 3203446 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.5 123 "by doubleHit,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 5414 rs470117 CHKB-CPT1B 386593 22 49300097 NM_152247 NP_689453 A/G E531K minus 640370 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 5415 rs470117 CHKB-CPT1B 386593 22 49300097 NM_152247 NP_689453 A/G E531K minus 640370 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 5416 rs470117 CHKB-CPT1B 386593 22 49300097 NM_152247 NP_689453 A/G E531K minus 640370 1303 SEQUENOM CEPH CEPH (92) 93 0.47 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 5417 rs470117 CHKB-CPT1B 386593 22 49300097 NM_152247 NP_689453 A/G E531K minus 3203446 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.5 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 5418 rs470428 HP 3240 16 70652183 NM_005143 NP_005134 C/T T372A minus 757475 1303 SEQUENOM CEPH CEPH (92) 92 0.1 83 by freq 16q22.1 haptoglobin 5419 rs471334 SPTBN2 6712 11 66218352 NM_006946 NP_008877 A/G A1446V plus 640679 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 11q13 "spectrin, beta, non-erythrocytic 2" 5420 rs471979 NALP5 126206 19 61230788 NM_153447 NP_703148 C/G M459I plus 24585025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 5421 rs471979 NALP5 126206 19 61230788 NM_153447 NP_703148 C/G M459I plus 24585025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 5422 rs471979 NALP5 126206 19 61230788 NM_153447 NP_703148 C/G M459I plus 24585025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by submitter,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 5423 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 1383970 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.45 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5424 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 1383970 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.25 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5425 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 1383970 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.25 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5426 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 1383970 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5427 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 23404224 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5428 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 23404224 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5429 rs473267 PGM3 5238 6 83936886 NM_015599 NP_056414 C/T D466N plus 23404224 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q14.1-q15 phosphoglucomutase 3 5430 rs474474 CSMD2 114784 1 33907376 NM_052896 NP_443128 C/T H538R plus 23178609 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p34.3 CUB and Sushi multiple domains 2 5431 rs474474 CSMD2 114784 1 33907376 NM_052896 NP_443128 C/T H538R plus 23178609 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 1p34.3 CUB and Sushi multiple domains 2 5432 rs474474 CSMD2 114784 1 33907376 NM_052896 NP_443128 C/T H538R plus 23178609 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p34.3 CUB and Sushi multiple domains 2 5433 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 644418 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.44 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5434 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 644418 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5435 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 980252 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.3 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5436 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 980252 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.32 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5437 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 980252 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5438 rs475002 SNAPC2 6618 19 7892638 NM_003083 NP_003074 C/G L118V minus 980252 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 45 0.5 121 "HapMap,doubleHit,freq" 19p13.3-p13.2 "small nuclear RNA activating complex, polypeptide 2, 45kDa" 5439 rs475076 IBRDC1 154214 6 125420811 NM_152553 NP_689766 A/G V89I plus 23370580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q22.33 IBR domain containing 1 5440 rs475076 IBRDC1 154214 6 125420811 NM_152553 NP_689766 A/G V89I plus 23370580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 6q22.33 IBR domain containing 1 5441 rs475076 IBRDC1 154214 6 125420811 NM_152553 NP_689766 A/G V89I plus 23370580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q22.33 IBR domain containing 1 5442 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.23 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5443 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5444 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5445 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 686 TSC-SANGER SC_12_A CORIELL African American (12) 8 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5446 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 11 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5447 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 11 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5448 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 771 TSC-CSHL SC_12_A CORIELL Asian (12) 8 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5449 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 11 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5450 rs477207 AOC3 8639 17 38261899 NM_003734 NP_003725 C/T G700S minus 646683 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 119 "by cluster,freq" 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 5451 rs477284 KBTBD9 114818 2 23762227 XM_496546 XP_496546 A/G A3301T plus 1953859 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 5452 rs477830 LUZP1 7798 1 23164689 NM_033631 NP_361013 C/T G458S plus 23687335 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 1p36 leucine zipper protein 1 5453 rs477830 LUZP1 7798 1 23164689 NM_033631 NP_361013 C/T G458S plus 23687335 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 1p36 leucine zipper protein 1 5454 rs477830 LUZP1 7798 1 23164689 NM_033631 NP_361013 C/T G458S plus 23687335 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1p36 leucine zipper protein 1 5455 rs479499 MICL 160364 12 10028824 NM_138337 NP_612210 A/C K244Q plus 2163044 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5456 rs479499 MICL 160364 12 10028824 NM_138337 NP_612210 A/C K244Q plus 23786592 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5457 rs479499 MICL 160364 12 10028824 NM_138337 NP_612210 A/C K244Q plus 23786592 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5458 rs479499 MICL 160364 12 10028824 NM_138337 NP_612210 A/C K244Q plus 23786592 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5459 rs479499 MICL 160364 12 10028824 NM_201623 NP_963917 A/C K211Q plus 2163044 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5460 rs479499 MICL 160364 12 10028824 NM_201623 NP_963917 A/C K211Q plus 23786592 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5461 rs479499 MICL 160364 12 10028824 NM_201623 NP_963917 A/C K211Q plus 23786592 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5462 rs479499 MICL 160364 12 10028824 NM_201623 NP_963917 A/C K211Q plus 23786592 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 5463 rs479632 PITX1 5307 5 134392417 NM_002653 NP_002644 C/G G299A minus 649161 1303 SEQUENOM CEPH CEPH (92) 92 0.47 100 "by doubleHit,freq,cluster" 5q31 paired-like homeodomain transcription factor 1 5464 rs479661 NOSTRIN 115677 2 169546884 NM_052946 NP_443178 C/T G395E minus 5326545 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 121 "HapMap,doubleHit,freq,cluster" 2q31.1 nitric oxide synthase trafficking 5465 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 650280 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5466 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 650280 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5467 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 3198379 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5468 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 4479971 506 NCBI NIHPDR NIHPDR 176 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5469 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 23615483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5470 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 23615483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5471 rs480727 CDT1 81620 16 87399730 NM_030928 NP_112190 A/G T262A plus 23615483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 16q24.3 DNA replication factor 5472 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 652506 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5473 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 652506 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5474 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 652506 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.31 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5475 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 652506 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5476 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 4922550 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.39 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5477 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 23973747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5478 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 23973747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5479 rs482912 LAMP3 27074 3 184336372 NM_014398 NP_055213 A/G I318V minus 23973747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 3q26.3-q27 lysosomal-associated membrane protein 3 5480 rs484373 FGL1 2267 8 17787300 NM_004467 NP_004458 C/T T15I minus 2987935 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.4 123 "by doubleHit,cluster" 8p22-p21.3 fibrinogen-like 1 5481 rs484373 FGL1 2267 8 17787300 NM_147203 NP_671736 C/T T15I minus 2987935 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.4 123 "by doubleHit,cluster" 8p22-p21.3 fibrinogen-like 1 5482 rs484373 FGL1 2267 8 17787300 NM_201552 NP_963846 C/T T15I minus 2987935 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.4 123 "by doubleHit,cluster" 8p22-p21.3 fibrinogen-like 1 5483 rs484373 FGL1 2267 8 17787300 NM_201553 NP_963847 C/T T15I minus 2987935 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.4 123 "by doubleHit,cluster" 8p22-p21.3 fibrinogen-like 1 5484 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 655712 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5485 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 655712 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5486 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 655712 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.2 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5487 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 655712 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5488 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 24531742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5489 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 24531742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5490 rs486055 MMP10 4319 11 102155634 NM_002425 NP_002416 C/T R53K plus 24531742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 5491 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5492 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.44 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5493 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5494 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 777 SNP500CANCER HISP1 Hispanic (23) 46 0.28 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5495 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5496 rs486907 RNASEL 6041 1 179286214 NM_021133 NP_066956 A/G R462Q minus 12675607 1303 SEQUENOM CEPH CEPH (92) 92 0.47 118 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 5497 rs487230 USP24 23358 1 55253195 XM_371254 XP_371254 C/T V2385A minus 1581530 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 5498 rs487230 USP24 23358 1 55253195 XM_371254 XP_371254 C/T V2385A minus 3242073 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 5499 rs487230 USP24 23358 1 55253195 XM_371254 XP_371254 C/T V2385A minus 23157276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 5500 rs487230 USP24 23358 1 55253195 XM_371254 XP_371254 C/T V2385A minus 23157276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 5501 rs487230 USP24 23358 1 55253195 XM_371254 XP_371254 C/T V2385A minus 23157276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 5502 rs487848 POLQ 10721 3 122711650 NM_006596 NP_006587 A/G A716V plus 1804665 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.1 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5503 rs487848 POLQ 10721 3 122711650 NM_006596 NP_006587 A/G A716V plus 23322353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5504 rs487848 POLQ 10721 3 122711650 NM_006596 NP_006587 A/G A716V plus 23322353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5505 rs487848 POLQ 10721 3 122711650 NM_006596 NP_006587 A/G A716V plus 23322353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5506 rs487848 POLQ 10721 3 122711650 NM_199420 NP_955452 A/G A583V plus 1804665 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.1 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5507 rs487848 POLQ 10721 3 122711650 NM_199420 NP_955452 A/G A583V plus 23322353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5508 rs487848 POLQ 10721 3 122711650 NM_199420 NP_955452 A/G A583V plus 23322353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5509 rs487848 POLQ 10721 3 122711650 NM_199420 NP_955452 A/G A583V plus 23322353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5510 rs487989 POLA2 23649 11 64821266 NM_002689 NP_002680 A/G G583R plus 657678 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 111 "HapMap,doubleHit,freq" 11q13.1 "polymerase (DNA-directed), alpha (70kD)" 5511 rs487989 POLA2 23649 11 64821266 NM_002689 NP_002680 A/G G583R plus 657678 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 111 "HapMap,doubleHit,freq" 11q13.1 "polymerase (DNA-directed), alpha (70kD)" 5512 rs487989 POLA2 23649 11 64821266 NM_002689 NP_002680 A/G G583R plus 657678 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.13 111 "HapMap,doubleHit,freq" 11q13.1 "polymerase (DNA-directed), alpha (70kD)" 5513 rs487989 POLA2 23649 11 64821266 NM_002689 NP_002680 A/G G583R plus 657678 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.07 111 "HapMap,doubleHit,freq" 11q13.1 "polymerase (DNA-directed), alpha (70kD)" 5514 rs487989 POLA2 23649 11 64821266 NM_002689 NP_002680 A/G G583R plus 5350029 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 111 "HapMap,doubleHit,freq" 11q13.1 "polymerase (DNA-directed), alpha (70kD)" 5515 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 662376 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5516 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 662376 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5517 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 4918023 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5518 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 23941000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5519 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 23941000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5520 rs492594 G6PC2 57818 2 169589683 NM_021176 NP_066999 C/G V219L minus 23941000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 5521 rs495335 CRISP3 10321 6 49809482 NM_006061 NP_006052 A/G S106P plus 2764411 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 6p12.3 cysteine-rich secretory protein 3 5522 rs495335 CRISP3 10321 6 49809482 NM_006061 NP_006052 A/G S106P plus 23944486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6p12.3 cysteine-rich secretory protein 3 5523 rs495335 CRISP3 10321 6 49809482 NM_006061 NP_006052 A/G S106P plus 23944486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12.3 cysteine-rich secretory protein 3 5524 rs495335 CRISP3 10321 6 49809482 NM_006061 NP_006052 A/G S106P plus 23944486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 6p12.3 cysteine-rich secretory protein 3 5525 rs495820 SNX15 29907 11 64563811 NM_013306 NP_037438 C/T R334C plus 665679 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 11q12 sorting nexin 15 5526 rs495820 SNX15 29907 11 64563811 NM_147777 NP_680086 C/T R248C plus 665679 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 11q12 sorting nexin 15 5527 rs500079 PPP1R15A 23645 19 54070806 NM_014330 NP_055145 C/T T597A minus 2132902 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5528 rs500079 PPP1R15A 23645 19 54070806 NM_014330 NP_055145 C/T T597A minus 23812937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5529 rs500079 PPP1R15A 23645 19 54070806 NM_014330 NP_055145 C/T T597A minus 23812937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5530 rs500079 PPP1R15A 23645 19 54070806 NM_014330 NP_055145 C/T T597A minus 23812937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5531 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 674139 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.05 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5532 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 674139 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 5 0.5 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5533 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 674139 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.35 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5534 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 674139 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5535 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 3177960 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.28 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5536 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 23975354 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5537 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 23975354 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5538 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 23975354 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5539 rs504122 SPRY2 10253 13 79809526 NM_005842 NP_005833 C/T P106S minus 24811651 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by doubleHit,submitter,freq,cluster" 13q22.2 sprouty homolog 2 (Drosophila) 5540 rs505760 EFHC1 114327 6 52437804 NM_018100 NP_060570 A/G E357K plus 675807 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.19 87 by freq 6p12.3 EF-hand domain (C-terminal) containing 1 5541 rs505760 EFHC1 114327 6 52437804 NM_018100 NP_060570 A/G E357K plus 675807 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 87 by freq 6p12.3 EF-hand domain (C-terminal) containing 1 5542 rs505760 EFHC1 114327 6 52437804 NM_018100 NP_060570 A/G E357K plus 675807 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 87 by freq 6p12.3 EF-hand domain (C-terminal) containing 1 5543 rs505760 EFHC1 114327 6 52437804 NM_018100 NP_060570 A/G E357K plus 675807 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.01 87 by freq 6p12.3 EF-hand domain (C-terminal) containing 1 5544 rs505760 EFHC1 114327 6 52437804 NM_018100 NP_060570 A/G E357K plus 1960229 1303 SEQUENOM CEPH CEPH (92) 92 1 87 by freq 6p12.3 EF-hand domain (C-terminal) containing 1 5545 rs506028 SPTBN2 6712 11 66225045 NM_006946 NP_008877 A/G V1034A plus 676077 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 11q13 "spectrin, beta, non-erythrocytic 2" 5546 rs506425 PLEKHA4 57664 19 54060655 NM_020904 NP_065955 A/G I37V minus 1783647 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "by doubleHit,freq,cluster" 19q13.33 "pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4" 5547 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 12675356 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5548 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 12675356 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5549 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 12675356 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5550 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 12675356 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5551 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 12675356 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5552 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 24363886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5553 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 24363886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5554 rs506504 CHEK1 1111 11 125030405 NM_001274 NP_001265 C/T I471V minus 24363886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q24-q24 CHK1 checkpoint homolog (S. pombe) 5555 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 677961 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5556 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 677961 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5557 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 677961 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5558 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 677961 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.45 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5559 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 2832698 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5560 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 3221785 738 YUSUKE JBIC-ALLELE Japanese (752) 1086 0.25 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5561 rs507879 CASP5 838 11 104383137 NM_004347 NP_004338 A/G T90A minus 4403105 649 FHCRC POPU1 USA (20) 40 0.4 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5562 rs508405 CAPN13 92291 2 30892591 NM_144575 NP_653176 A/G A280T minus 24636906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by submitter,freq,cluster" 2p22-p21 calpain 13 5563 rs508405 CAPN13 92291 2 30892591 NM_144575 NP_653176 A/G A280T minus 24636906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 2p22-p21 calpain 13 5564 rs508405 CAPN13 92291 2 30892591 NM_144575 NP_653176 A/G A280T minus 24636906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 2p22-p21 calpain 13 5565 rs512208 SPRL6A 84648 1 149365358 NM_032563 NP_115952 G/T G43V minus 682388 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 83 by freq 1q21 small proline rich-like (epidermal differentiation complex) 6A 5566 rs512208 SPRL6A 84648 1 149365358 NM_032563 NP_115952 G/T G43V minus 682388 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 83 by freq 1q21 small proline rich-like (epidermal differentiation complex) 6A 5567 rs512208 SPRL6A 84648 1 149365358 NM_032563 NP_115952 G/T G43V minus 682388 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 83 by freq 1q21 small proline rich-like (epidermal differentiation complex) 6A 5568 rs512208 SPRL6A 84648 1 149365358 NM_032563 NP_115952 G/T G43V minus 682388 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.28 83 by freq 1q21 small proline rich-like (epidermal differentiation complex) 6A 5569 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 685531 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5570 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 685531 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.06 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5571 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 685531 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5572 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 2100941 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5573 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 23185521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5574 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 23185521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5575 rs515299 HF1 3075 1 193438334 NM_000186 NP_000177 A/C S890I minus 23185521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 1q32 H factor 1 (complement) 5576 rs517733 IMAA 387254 16 21438655 NM_199182 NP_954651 C/G S178C minus 2683494 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 16p12 hLAT1-3TM 5577 rs518835 MLL 4297 11 117858015 NM_005933 NP_005924 A/G S1337L minus 689130 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 5578 rs518835 MLL 4297 11 117858015 NM_005933 NP_005924 A/G S1337L minus 689130 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 5579 rs518835 MLL 4297 11 117858015 NM_005933 NP_005924 A/G S1337L minus 689130 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 5580 rs518835 MLL 4297 11 117858015 NM_005933 NP_005924 A/G S1337L minus 689130 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 5581 rs518835 MLL 4297 11 117858015 NM_005933 NP_005924 A/G S1337L minus 689130 1303 SEQUENOM CEPH CEPH (92) 92 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 5582 rs520805 TECTA 7007 11 120505984 NM_005422 NP_005413 A/G V932A minus 24149575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5583 rs520805 TECTA 7007 11 120505984 NM_005422 NP_005413 A/G V932A minus 24149575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5584 rs520805 TECTA 7007 11 120505984 NM_005422 NP_005413 A/G V932A minus 24149575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.21 123 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5585 rs522496 KIF17 57576 1 20770207 NM_020816 NP_065867 C/T V402M plus 692860 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 5586 rs522496 KIF17 57576 1 20770207 NM_020816 NP_065867 C/T V402M plus 20563260 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 5587 rs522496 KIF17 57576 1 20770207 NM_020816 NP_065867 C/T V402M plus 23159512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 5588 rs522496 KIF17 57576 1 20770207 NM_020816 NP_065867 C/T V402M plus 23159512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 5589 rs522496 KIF17 57576 1 20770207 NM_020816 NP_065867 C/T V402M plus 23159512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 5590 rs523104 CASP5 838 11 104374918 NM_004347 NP_004338 C/G L318V plus 16124289 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5591 rs523104 CASP5 838 11 104374918 NM_004347 NP_004338 C/G L318V plus 24610835 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5592 rs523104 CASP5 838 11 104374918 NM_004347 NP_004338 C/G L318V plus 24610835 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5593 rs523104 CASP5 838 11 104374918 NM_004347 NP_004338 C/G L318V plus 24610835 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 5594 rs524523 HSPA5BP1 54972 11 60459979 NM_017870 NP_060340 C/T R700H minus 694925 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,freq" 11q12.2 "heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1" 5595 rs524523 HSPA5BP1 54972 11 60459979 NM_178031 NP_821174 C/T R699H minus 694925 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,freq" 11q12.2 "heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1" 5596 rs524625 ANKRD5 63926 20 9978452 NM_022096 NP_071379 A/G G412E plus 695029 1303 SEQUENOM CEPH CEPH (92) 92 0.07 83 by freq 20pter-q11.23 ankyrin repeat domain 5 5597 rs524625 ANKRD5 63926 20 9978452 NM_198798 NP_942093 A/G G412E plus 695029 1303 SEQUENOM CEPH CEPH (92) 92 0.07 83 by freq 20pter-q11.23 ankyrin repeat domain 5 5598 rs525886 PCDHA8 56140 5 140201896 NM_018911 NP_061734 C/G P269R minus 696312 1303 SEQUENOM CEPH CEPH (92) 92 0.04 83 by freq 5q31 protocadherin alpha 8 5599 rs525886 PCDHA8 56140 5 140201896 NM_031856 NP_114062 C/G P269R minus 696312 1303 SEQUENOM CEPH CEPH (92) 92 0.04 83 by freq 5q31 protocadherin alpha 8 5600 rs526433 TECTA 7007 11 120538188 NM_005422 NP_005413 C/T S1724N minus 696867 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5601 rs526433 TECTA 7007 11 120538188 NM_005422 NP_005413 C/T S1724N minus 696867 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5602 rs526433 TECTA 7007 11 120538188 NM_005422 NP_005413 C/T S1724N minus 696867 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 121 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5603 rs526433 TECTA 7007 11 120538188 NM_005422 NP_005413 C/T S1724N minus 696867 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 121 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5604 rs526433 TECTA 7007 11 120538188 NM_005422 NP_005413 C/T S1724N minus 2830606 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by doubleHit,freq,cluster" 11q22-q24 tectorin alpha 5605 rs527176 KBTBD9 114818 2 23777560 XM_496546 XP_496546 C/G R3765S plus 697626 1303 SEQUENOM CEPH CEPH (92) 92 0.39 108 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 5606 rs527176 KBTBD9 114818 2 23777560 XM_496546 XP_496546 C/G R3765S plus 4917605 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.37 108 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 5607 rs527221 DMPK 1760 19 50967816 NM_004409 NP_004400 C/G L423V plus 24109680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 19q13.3 dystrophia myotonica-protein kinase 5608 rs527221 DMPK 1760 19 50967816 NM_004409 NP_004400 C/G L423V plus 24109680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 "by cluster,freq" 19q13.3 dystrophia myotonica-protein kinase 5609 rs527221 DMPK 1760 19 50967816 NM_004409 NP_004400 C/G L423V plus 24109680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 19q13.3 dystrophia myotonica-protein kinase 5610 rs529038 ROS1 6098 6 117728926 NM_002944 NP_002935 A/G D2213N minus 699524 1303 SEQUENOM CEPH CEPH (92) 92 1 121 by doubleHit 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 5611 rs529208 DOCK8 81704 9 276593 NM_203447 NP_982272 A/C P29T plus 2102793 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24.3 dedicator of cytokinesis 8 5612 rs529208 DOCK8 81704 9 276593 NM_203447 NP_982272 A/C P29T plus 3210335 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24.3 dedicator of cytokinesis 8 5613 rs529208 DOCK8 81704 9 276593 NM_203447 NP_982272 A/C P29T plus 24286323 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24.3 dedicator of cytokinesis 8 5614 rs529208 DOCK8 81704 9 276593 NM_203447 NP_982272 A/C P29T plus 24286323 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24.3 dedicator of cytokinesis 8 5615 rs529208 DOCK8 81704 9 276593 NM_203447 NP_982272 A/C P29T plus 24286323 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24.3 dedicator of cytokinesis 8 5616 rs532411 POLQ 10721 3 122669112 NM_006596 NP_006587 C/T A2439V minus 1804660 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5617 rs532411 POLQ 10721 3 122669112 NM_006596 NP_006587 C/T A2439V minus 4479823 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5618 rs532411 POLQ 10721 3 122669112 NM_199420 NP_955452 C/T A2306V minus 1804660 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5619 rs532411 POLQ 10721 3 122669112 NM_199420 NP_955452 C/T A2306V minus 4479823 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 5620 rs532598 SEMA6D 80031 15 45845363 NM_020858 NP_065909 C/T S478N minus 23994938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5621 rs532598 SEMA6D 80031 15 45845363 NM_020858 NP_065909 C/T S478N minus 23994938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5622 rs532598 SEMA6D 80031 15 45845363 NM_020858 NP_065909 C/T S478N minus 23994938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5623 rs532598 SEMA6D 80031 15 45845363 NM_153616 NP_705869 C/T S478N minus 23994938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5624 rs532598 SEMA6D 80031 15 45845363 NM_153616 NP_705869 C/T S478N minus 23994938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5625 rs532598 SEMA6D 80031 15 45845363 NM_153616 NP_705869 C/T S478N minus 23994938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5626 rs532598 SEMA6D 80031 15 45845363 NM_153617 NP_705870 C/T S478N minus 23994938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5627 rs532598 SEMA6D 80031 15 45845363 NM_153617 NP_705870 C/T S478N minus 23994938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5628 rs532598 SEMA6D 80031 15 45845363 NM_153617 NP_705870 C/T S478N minus 23994938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5629 rs532598 SEMA6D 80031 15 45845363 NM_153618 NP_705871 C/T S478N minus 23994938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5630 rs532598 SEMA6D 80031 15 45845363 NM_153618 NP_705871 C/T S478N minus 23994938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5631 rs532598 SEMA6D 80031 15 45845363 NM_153618 NP_705871 C/T S478N minus 23994938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5632 rs532598 SEMA6D 80031 15 45845363 NM_153619 NP_705872 C/T S478N minus 23994938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5633 rs532598 SEMA6D 80031 15 45845363 NM_153619 NP_705872 C/T S478N minus 23994938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5634 rs532598 SEMA6D 80031 15 45845363 NM_153619 NP_705872 C/T S478N minus 23994938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 5635 rs532648 FOXN1 8456 17 23888429 NM_003593 NP_003584 C/G A599P minus 703214 1303 SEQUENOM CEPH CEPH (92) 92 0.27 108 "by doubleHit,freq,cluster" 17q11-q12 forkhead box N1 5636 rs532648 FOXN1 8456 17 23888429 NM_003593 NP_003584 C/G A599P minus 4930644 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.23 108 "by doubleHit,freq,cluster" 17q11-q12 forkhead box N1 5637 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 703411 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.3 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5638 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 703411 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 11 0.5 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5639 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 703411 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5640 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 703411 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5641 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 703411 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5642 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 4925302 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.33 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5643 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 23385103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5644 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 23385103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5645 rs532841 DLC1 10395 8 13001846 NM_006094 NP_006085 C/T V354M plus 23385103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5646 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 703411 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.3 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5647 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 703411 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 11 0.5 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5648 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 703411 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5649 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 703411 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5650 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 703411 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5651 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 4925302 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.33 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5652 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 23385103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5653 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 23385103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5654 rs532841 DLC1 10395 8 13001846 NM_182643 NP_872584 C/T V791M plus 23385103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 8p22 deleted in liver cancer 1 5655 rs532964 DMGDH 29958 5 78376042 NM_013391 NP_037523 C/T S279P minus 24413460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 5656 rs532964 DMGDH 29958 5 78376042 NM_013391 NP_037523 C/T S279P minus 24413460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 5657 rs532964 DMGDH 29958 5 78376042 NM_013391 NP_037523 C/T S279P minus 24413460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 5658 rs533617 APOB 338 2 21145624 NM_000384 NP_000375 C/T H1923R plus 704195 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,submitter,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 5659 rs533617 APOB 338 2 21145624 NM_000384 NP_000375 C/T H1923R plus 704195 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 5660 rs533617 APOB 338 2 21145624 NM_000384 NP_000375 C/T H1923R plus 24242187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 5661 rs533617 APOB 338 2 21145624 NM_000384 NP_000375 C/T H1923R plus 24242187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 5662 rs533617 APOB 338 2 21145624 NM_000384 NP_000375 C/T H1923R plus 24242187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 5663 rs534399 HF1 3075 1 193442724 NM_000186 NP_000177 A/C V1007L minus 23185567 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q32 H factor 1 (complement) 5664 rs534399 HF1 3075 1 193442724 NM_000186 NP_000177 A/C V1007L minus 23185567 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 1q32 H factor 1 (complement) 5665 rs534399 HF1 3075 1 193442724 NM_000186 NP_000177 A/C V1007L minus 23185567 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q32 H factor 1 (complement) 5666 rs536009 ABCA5 23461 17 64785477 NM_018672 NP_061142 A/C A832S plus 706638 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5667 rs536009 ABCA5 23461 17 64785477 NM_172232 NP_758424 A/C A832S plus 706638 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5668 rs536174 COL4A1 1282 13 109637551 NM_001845 NP_001836 A/C T555P minus 706804 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 13q34 "collagen, type IV, alpha 1" 5669 rs536174 COL4A1 1282 13 109637551 NM_001845 NP_001836 A/C T555P minus 1680519 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.11 123 "by cluster,freq" 13q34 "collagen, type IV, alpha 1" 5670 rs536174 COL4A1 1282 13 109637551 NM_001845 NP_001836 A/C T555P minus 1680519 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.1 123 "by cluster,freq" 13q34 "collagen, type IV, alpha 1" 5671 rs536174 COL4A1 1282 13 109637551 NM_001845 NP_001836 A/C T555P minus 1680519 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.06 123 "by cluster,freq" 13q34 "collagen, type IV, alpha 1" 5672 rs536455 PRG2 5553 11 56911577 NM_002728 NP_002719 A/G H206Y plus 4059217 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 11q12 "proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)" 5673 rs536455 PRG2 5553 11 56911577 NM_002728 NP_002719 A/G H206Y plus 23612263 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11q12 "proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)" 5674 rs536455 PRG2 5553 11 56911577 NM_002728 NP_002719 A/G H206Y plus 23612263 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11q12 "proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)" 5675 rs536455 PRG2 5553 11 56911577 NM_002728 NP_002719 A/G H206Y plus 23612263 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q12 "proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein)" 5676 rs537816 DDOST 1650 1 20733179 NM_005216 NP_005207 C/G R8G plus 708476 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1p36.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 5677 rs537816 DDOST 1650 1 20733179 NM_005216 NP_005207 C/G R8G plus 23159047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p36.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 5678 rs537816 DDOST 1650 1 20733179 NM_005216 NP_005207 C/G R8G plus 23159047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1p36.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 5679 rs537816 DDOST 1650 1 20733179 NM_005216 NP_005207 C/G R8G plus 23159047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1p36.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 5680 rs539351 GCNT2 2651 6 10695024 NM_145655 NP_663630 C/G D272E plus 3076034 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 6p24 "glucosaminyl (N-acetyl) transferase 2, I-branching enzyme" 5681 rs540687 PRG3 10394 11 56903592 NM_006093 NP_006084 A/G I109T plus 10666726 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,doubleHit,cluster" 11q12 proteoglycan 3 5682 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 977917 771 TSC-CSHL SC_12_A CORIELL Asian (12) 11 0.5 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5683 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 977917 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5684 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 977917 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.21 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5685 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 977917 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.13 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5686 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 2209289 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.28 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5687 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 2209289 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.4 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5688 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 2209289 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5689 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 4934673 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.33 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5690 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 23840242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5691 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 23840242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5692 rs540742 GIPC2 54810 1 78297107 NM_017655 NP_060125 C/T L206P plus 23840242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 1p31.1 PDZ domain protein GIPC2 5693 rs540874 ACTN3 89 11 66086308 NM_001104 NP_001095 C/T Q776R minus 3176483 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.13 123 "by doubleHit,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 5694 rs540874 ACTN3 89 11 66086308 NM_001104 NP_001095 C/T Q776R minus 3232362 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.5 123 "by doubleHit,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 5695 rs540874 ACTN3 89 11 66086308 NM_001104 NP_001095 C/T Q776R minus 24562577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 5696 rs540874 ACTN3 89 11 66086308 NM_001104 NP_001095 C/T Q776R minus 24562577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 5697 rs540874 ACTN3 89 11 66086308 NM_001104 NP_001095 C/T Q776R minus 24562577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 5698 rs542998 RTN3 10313 11 63243962 NM_201428 NP_958831 C/T V452A plus 5561507 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 reticulon 3 5699 rs542998 RTN3 10313 11 63243962 NM_201428 NP_958831 C/T V452A plus 23743402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 reticulon 3 5700 rs542998 RTN3 10313 11 63243962 NM_201428 NP_958831 C/T V452A plus 23743402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 reticulon 3 5701 rs542998 RTN3 10313 11 63243962 NM_201428 NP_958831 C/T V452A plus 23743402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 reticulon 3 5702 rs543355 LAMA1 284217 18 6948609 NM_005559 NP_005550 C/T T2611A plus 714130 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5703 rs543355 LAMA1 284217 18 6948609 NM_005559 NP_005550 C/T T2611A plus 23585775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5704 rs543355 LAMA1 284217 18 6948609 NM_005559 NP_005550 C/T T2611A plus 23585775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5705 rs543355 LAMA1 284217 18 6948609 NM_005559 NP_005550 C/T T2611A plus 23585775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5706 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5707 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5708 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 902 AFFY Caucasian 24 1 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5709 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 903 AFFY Asian 12 0.25 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5710 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 904 AFFY CEPH 12 1 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5711 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 905 AFFY PDpanel 46 0.07 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5712 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 12161398 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5713 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 24183476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5714 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 24183476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5715 rs544641 ZBTB3 79842 11 62276141 NM_024784 NP_079060 C/G I574M minus 24183476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 11q12.3 zinc finger and BTB domain containing 3 5716 rs546502 PPFIA1 8500 11 69796137 NM_003626 NP_003617 A/G V71I plus 717361 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 108 "HapMap,freq,cluster" 11q13.2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1" 5717 rs546502 PPFIA1 8500 11 69796137 NM_003626 NP_003617 A/G V71I plus 717361 1303 SEQUENOM CEPH CEPH (92) 92 0.29 108 "HapMap,freq,cluster" 11q13.2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1" 5718 rs546502 PPFIA1 8500 11 69796137 NM_177423 NP_803172 A/G V71I plus 717361 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 108 "HapMap,freq,cluster" 11q13.2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1" 5719 rs546502 PPFIA1 8500 11 69796137 NM_177423 NP_803172 A/G V71I plus 717361 1303 SEQUENOM CEPH CEPH (92) 92 0.29 108 "HapMap,freq,cluster" 11q13.2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1" 5720 rs547068 OR10G4 390264 11 123391562 XM_372436 XP_372436 A/G L24P minus 717937 1303 SEQUENOM CEPH CEPH (92) 92 0.13 83 by freq 11q24.2 "olfactory receptor, family 10, subfamily G, member 4" 5721 rs547499 GPR116 221395 6 46935032 NM_015234 NP_056049 C/T M856T minus 718374 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,submitter,freq,cluster" 6p21.1 G protein-coupled receptor 116 5722 rs547499 GPR116 221395 6 46935032 NM_015234 NP_056049 C/T M856T minus 24001668 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 6p21.1 G protein-coupled receptor 116 5723 rs547499 GPR116 221395 6 46935032 NM_015234 NP_056049 C/T M856T minus 24001668 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6p21.1 G protein-coupled receptor 116 5724 rs547499 GPR116 221395 6 46935032 NM_015234 NP_056049 C/T M856T minus 24001668 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 6p21.1 G protein-coupled receptor 116 5725 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 2819712 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.15 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5726 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 2819712 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.22 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5727 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 2819712 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5728 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 2819712 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5729 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 24253037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5730 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 24253037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5731 rs549148 INSL5 10022 1 66978777 NM_005478 NP_005469 A/T Q50L plus 24253037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p31.1-p22.3 insulin-like 5 5732 rs550252 TCEB3 6924 1 23824246 NM_003198 NP_003189 C/T A490V plus 721179 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 119 by freq 1p36.1 "transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)" 5733 rs550252 TCEB3 6924 1 23824246 NM_003198 NP_003189 C/T A490V plus 721179 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 119 by freq 1p36.1 "transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)" 5734 rs550252 TCEB3 6924 1 23824246 NM_003198 NP_003189 C/T A490V plus 721179 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 119 by freq 1p36.1 "transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)" 5735 rs550252 TCEB3 6924 1 23824246 NM_003198 NP_003189 C/T A490V plus 721179 1303 SEQUENOM CEPH CEPH (92) 92 0.04 119 by freq 1p36.1 "transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)" 5736 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 721438 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.29 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5737 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 721438 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.09 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5738 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 721438 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5739 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 721438 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.16 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5740 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 721438 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5741 rs550510 NDP52 10241 17 44281614 NM_005831 NP_005822 A/G G140E plus 4946483 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 108 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 5742 rs553717 GPC5 2262 13 91143580 NM_004466 NP_004457 A/G A155V minus 724691 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,submitter,freq,cluster" 13q32 glypican 5 5743 rs553717 GPC5 2262 13 91143580 NM_004466 NP_004457 A/G A155V minus 23567068 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 13q32 glypican 5 5744 rs553717 GPC5 2262 13 91143580 NM_004466 NP_004457 A/G A155V minus 23567068 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 13q32 glypican 5 5745 rs553717 GPC5 2262 13 91143580 NM_004466 NP_004457 A/G A155V minus 23567068 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 13q32 glypican 5 5746 rs554202 MOGAT2 80168 11 75106606 NM_025098 NP_079374 A/G M9V plus 1814968 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 monoacylglycerol O-acyltransferase 2 5747 rs554202 MOGAT2 80168 11 75106606 NM_025098 NP_079374 A/G M9V plus 4926852 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 monoacylglycerol O-acyltransferase 2 5748 rs554202 MOGAT2 80168 11 75106606 NM_025098 NP_079374 A/G M9V plus 23681355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 monoacylglycerol O-acyltransferase 2 5749 rs554202 MOGAT2 80168 11 75106606 NM_025098 NP_079374 A/G M9V plus 23681355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 monoacylglycerol O-acyltransferase 2 5750 rs554202 MOGAT2 80168 11 75106606 NM_025098 NP_079374 A/G M9V plus 23681355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 monoacylglycerol O-acyltransferase 2 5751 rs554971 IL28A 282616 19 44451175 NM_172138 NP_742150 A/G T10M minus 725976 1303 SEQUENOM CEPH CEPH (92) 92 0.38 103 by freq 19q13.13 "interleukin 28A (interferon, lambda 2)" 5752 rs555551 HYOU1 10525 11 118421516 NM_006389 NP_006380 A/T *1000L plus 726565 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.21 83 by freq 11q23.1-q23.3 hypoxia up-regulated 1 5753 rs555551 HYOU1 10525 11 118421516 NM_006389 NP_006380 A/T *1000L plus 726565 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 83 by freq 11q23.1-q23.3 hypoxia up-regulated 1 5754 rs555551 HYOU1 10525 11 118421516 NM_006389 NP_006380 A/T *1000L plus 726565 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 1 83 by freq 11q23.1-q23.3 hypoxia up-regulated 1 5755 rs555551 HYOU1 10525 11 118421516 NM_006389 NP_006380 A/T *1000L plus 726565 1303 SEQUENOM CEPH CEPH (92) 92 1 83 by freq 11q23.1-q23.3 hypoxia up-regulated 1 5756 rs556052 PPP1R15A 23645 19 54069248 NM_014330 NP_055145 C/G A316P minus 727083 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.3 120 "HapMap,doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5757 rs556052 PPP1R15A 23645 19 54069248 NM_014330 NP_055145 C/G A316P minus 4931713 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.13 120 "HapMap,doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5758 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 727186 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5759 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 727186 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5760 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 727186 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5761 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 727186 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 186 0.19 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5762 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 727186 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5763 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 3177537 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.13 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5764 rs556155 IARS 3376 9 92065192 NM_002161 NP_002152 C/T K1182E plus 3239879 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.12 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5765 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 727186 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5766 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 727186 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5767 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 727186 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5768 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 727186 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 186 0.19 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5769 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 727186 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5770 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 3177537 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.13 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5771 rs556155 IARS 3376 9 92065192 NM_013417 NP_038203 C/T K1182E plus 3239879 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.12 119 "HapMap,doubleHit,submitter,freq,cluster" 9q21 isoleucine-tRNA synthetase 5772 rs557337 TBC1D4 9882 13 74759002 XM_375032 XP_375032 A/G V1519A plus 728390 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,submitter,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 5773 rs557337 TBC1D4 9882 13 74759002 XM_375032 XP_375032 A/G V1519A plus 23547332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 5774 rs557337 TBC1D4 9882 13 74759002 XM_375032 XP_375032 A/G V1519A plus 23547332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,submitter,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 5775 rs557337 TBC1D4 9882 13 74759002 XM_375032 XP_375032 A/G V1519A plus 23547332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 5776 rs557491 ABCA5 23461 17 64778912 NM_018672 NP_061142 C/T M960V plus 23634389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5777 rs557491 ABCA5 23461 17 64778912 NM_018672 NP_061142 C/T M960V plus 23634389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5778 rs557491 ABCA5 23461 17 64778912 NM_018672 NP_061142 C/T M960V plus 23634389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5779 rs557491 ABCA5 23461 17 64778912 NM_172232 NP_758424 C/T M960V plus 23634389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5780 rs557491 ABCA5 23461 17 64778912 NM_172232 NP_758424 C/T M960V plus 23634389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5781 rs557491 ABCA5 23461 17 64778912 NM_172232 NP_758424 C/T M960V plus 23634389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 5782 rs557806 PPP1R15A 23645 19 54069054 NM_014330 NP_055145 C/G R251P minus 728867 1303 SEQUENOM CEPH CEPH (92) 92 0.29 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5783 rs557881 SLC6A12 6539 12 189386 NM_003044 NP_003035 C/T C10R minus 728942 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 98 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12" 5784 rs557881 SLC6A12 6539 12 189386 NM_003044 NP_003035 C/T C10R minus 728942 1303 SEQUENOM CEPH CEPH (92) 92 0.44 98 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12" 5785 rs557881 SLC6A12 6539 12 189386 NM_003044 NP_003035 C/T C10R minus 2990212 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.32 98 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12" 5786 rs558018 MTMR2 8898 11 95209096 NM_016156 NP_057240 A/G N545S minus 729082 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 92 by freq 11q22 myotubularin related protein 2 5787 rs558018 MTMR2 8898 11 95209096 NM_016156 NP_057240 A/G N545S minus 729082 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 92 by freq 11q22 myotubularin related protein 2 5788 rs558018 MTMR2 8898 11 95209096 NM_016156 NP_057240 A/G N545S minus 729082 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 92 by freq 11q22 myotubularin related protein 2 5789 rs558018 MTMR2 8898 11 95209096 NM_016156 NP_057240 A/G N545S minus 729082 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 1 92 by freq 11q22 myotubularin related protein 2 5790 rs558018 MTMR2 8898 11 95209096 NM_016156 NP_057240 A/G N545S minus 2829717 1303 SEQUENOM CEPH CEPH (92) 92 1 92 by freq 11q22 myotubularin related protein 2 5791 rs558018 MTMR2 8898 11 95209096 NM_201278 NP_958435 A/G N473S minus 729082 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 92 by freq 11q22 myotubularin related protein 2 5792 rs558018 MTMR2 8898 11 95209096 NM_201278 NP_958435 A/G N473S minus 729082 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 92 by freq 11q22 myotubularin related protein 2 5793 rs558018 MTMR2 8898 11 95209096 NM_201278 NP_958435 A/G N473S minus 729082 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 92 by freq 11q22 myotubularin related protein 2 5794 rs558018 MTMR2 8898 11 95209096 NM_201278 NP_958435 A/G N473S minus 729082 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 1 92 by freq 11q22 myotubularin related protein 2 5795 rs558018 MTMR2 8898 11 95209096 NM_201278 NP_958435 A/G N473S minus 2829717 1303 SEQUENOM CEPH CEPH (92) 92 1 92 by freq 11q22 myotubularin related protein 2 5796 rs558018 MTMR2 8898 11 95209096 NM_201281 NP_958438 A/G N473S minus 729082 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 92 by freq 11q22 myotubularin related protein 2 5797 rs558018 MTMR2 8898 11 95209096 NM_201281 NP_958438 A/G N473S minus 729082 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 92 by freq 11q22 myotubularin related protein 2 5798 rs558018 MTMR2 8898 11 95209096 NM_201281 NP_958438 A/G N473S minus 729082 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 92 by freq 11q22 myotubularin related protein 2 5799 rs558018 MTMR2 8898 11 95209096 NM_201281 NP_958438 A/G N473S minus 729082 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 1 92 by freq 11q22 myotubularin related protein 2 5800 rs558018 MTMR2 8898 11 95209096 NM_201281 NP_958438 A/G N473S minus 2829717 1303 SEQUENOM CEPH CEPH (92) 92 1 92 by freq 11q22 myotubularin related protein 2 5801 rs558614 LATS2 26524 13 20460948 NM_014572 NP_055387 C/T A324V minus 729690 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,freq,cluster" 13q11-q12 "LATS, large tumor suppressor, homolog 2 (Drosophila)" 5802 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.31 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5803 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.07 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5804 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.49 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5805 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 771 TSC-CSHL SC_12_A CORIELL Asian (12) 11 0.5 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5806 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.35 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5807 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 22 0.23 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5808 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.13 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5809 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5810 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 901 AFFY AfAm 12 0.33 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5811 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 902 AFFY Caucasian 24 0.04 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5812 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 903 AFFY Asian 10 0.4 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5813 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 904 AFFY CEPH 12 0.25 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5814 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 905 AFFY PDpanel 44 0.25 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5815 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 76795 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5816 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 3232320 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.46 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5817 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 24102663 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5818 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 24102663 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5819 rs560096 IGHMBP2 3508 11 68435538 NM_002180 NP_002171 C/T L201S plus 24102663 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 5820 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 731297 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5821 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 731297 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5822 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 731297 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5823 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 14391011 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5824 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 14391011 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5825 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 23963802 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5826 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 23963802 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5827 rs560191 TP53BP1 7158 15 41555066 NM_005657 NP_005648 C/G D353E plus 23963802 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 5828 rs561037 GBP4 115361 1 89364093 NM_052941 NP_443173 A/G E551K minus 732158 1303 SEQUENOM CEPH CEPH (92) 92 1 121 by doubleHit 1p22.2 guanylate binding protein 4 5829 rs561042 GBP4 115361 1 89364092 NM_052941 NP_443173 A/G E551G minus 732163 1303 SEQUENOM CEPH CEPH (92) 92 1 121 by doubleHit 1p22.2 guanylate binding protein 4 5830 rs561704 DDX25 29118 11 125283333 NM_013264 NP_037396 G/T M1R plus 5561651 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 HapMap 11q24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 5831 rs562047 HSPA1A 3303 6 31891842 NM_005345 NP_005336 C/G E110D minus 3172585 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.04 123 "by doubleHit,freq,cluster" 6p21.3 heat shock 70kDa protein 1A 5832 rs562047 HSPA1A 3303 6 31891842 NM_005345 NP_005336 C/G E110D minus 24811755 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by doubleHit,freq,cluster" 6p21.3 heat shock 70kDa protein 1A 5833 rs562556 PCSK9 255738 1 55236258 NM_174936 NP_777596 A/G V474I plus 23157117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1p32.3 proprotein convertase subtilisin/kexin type 9 5834 rs562556 PCSK9 255738 1 55236258 NM_174936 NP_777596 A/G V474I plus 23157117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1p32.3 proprotein convertase subtilisin/kexin type 9 5835 rs562556 PCSK9 255738 1 55236258 NM_174936 NP_777596 A/G V474I plus 23157117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p32.3 proprotein convertase subtilisin/kexin type 9 5836 rs564196 PPP1R15A 23645 19 54068394 NM_014330 NP_055145 C/T R31H minus 735374 1303 SEQUENOM CEPH CEPH (92) 92 0.46 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 5837 rs564754 TOR2A 27433 9 127575187 NM_130459 NP_569726 C/G W208C plus 735946 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq,cluster" 9q34.11 "torsin family 2, member A" 5838 rs566655 LAMA1 284217 18 7024508 NM_005559 NP_005550 A/C N674T minus 24554442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5839 rs566655 LAMA1 284217 18 7024508 NM_005559 NP_005550 A/C N674T minus 24554442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5840 rs566655 LAMA1 284217 18 7024508 NM_005559 NP_005550 A/C N674T minus 24554442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 5841 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 738322 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 by freq 6q22 male germ cell-associated kinase 5842 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 2445066 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 by freq 6q22 male germ cell-associated kinase 5843 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 2445066 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 by freq 6q22 male germ cell-associated kinase 5844 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 2445066 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 by freq 6q22 male germ cell-associated kinase 5845 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 2445066 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.02 123 by freq 6q22 male germ cell-associated kinase 5846 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 24373650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q22 male germ cell-associated kinase 5847 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 24373650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 6q22 male germ cell-associated kinase 5848 rs567083 MAK 4117 6 10883586 NM_005906 NP_005897 A/G P520S plus 24373650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 6q22 male germ cell-associated kinase 5849 rs569108 MS4A2 2206 11 59619680 NM_000139 NP_000130 C/T E237G minus 2390014 1303 SEQUENOM CEPH CEPH (92) 92 0.01 100 "by cluster,freq" 11q13 "membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)" 5850 rs569108 MS4A2 2206 11 59619680 NM_000139 NP_000130 C/T E237G minus 3243988 738 YUSUKE JBIC-ALLELE Japanese (752) 1092 0.17 100 "by cluster,freq" 11q13 "membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)" 5851 rs571264 MGAT5B 146664 17 72389854 NM_144677 NP_653278 C/T V70I minus 24101755 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5852 rs571264 MGAT5B 146664 17 72389854 NM_144677 NP_653278 C/T V70I minus 24101755 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5853 rs571264 MGAT5B 146664 17 72389854 NM_144677 NP_653278 C/T V70I minus 24101755 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5854 rs571264 MGAT5B 146664 17 72389854 NM_198955 NP_945193 C/T V81I minus 24101755 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5855 rs571264 MGAT5B 146664 17 72389854 NM_198955 NP_945193 C/T V81I minus 24101755 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5856 rs571264 MGAT5B 146664 17 72389854 NM_198955 NP_945193 C/T V81I minus 24101755 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 5857 rs571391 IMPG2 50939 3 102445844 NM_016247 NP_057331 A/G T674I plus 4918885 738 YUSUKE JBIC-ALLELE Japanese (752) 1434 0.34 121 "by doubleHit,freq,cluster" 3q12.2-q12.3 interphotoreceptor matrix proteoglycan 2 5858 rs571391 IMPG2 50939 3 102445844 NM_016247 NP_057331 A/G T674I plus 5223300 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 3q12.2-q12.3 interphotoreceptor matrix proteoglycan 2 5859 rs571655 NPHP4 261734 1 5899721 NM_015102 NP_055917 A/G E618K minus 742995 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,cluster" 1p36.22 nephronophthisis 4 5860 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 744584 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5861 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 16336543 901 AFFY AfAm 12 1 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5862 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 16336543 902 AFFY Caucasian 22 0.09 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5863 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 16336543 903 AFFY Asian 12 0.08 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5864 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 16336543 904 AFFY CEPH 12 0.17 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5865 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 16336543 905 AFFY PDpanel 46 0.09 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5866 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 24071709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5867 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 24071709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5868 rs573212 FBP2 8789 9 94429221 NM_003837 NP_003828 C/G V86L plus 24071709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 2" 5869 rs578430 MUSK 4593 9 110642698 NM_005592 NP_005583 G/T V829L plus 749904 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 by freq 9q31.3-q32 "muscle, skeletal, receptor tyrosine kinase" 5870 rs580459 SYTL2 54843 11 85114148 NM_206927 NP_996810 A/G M334V minus 5561313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5871 rs580459 SYTL2 54843 11 85114148 NM_206927 NP_996810 A/G M334V minus 24210842 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5872 rs580459 SYTL2 54843 11 85114148 NM_206927 NP_996810 A/G M334V minus 24210842 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5873 rs580459 SYTL2 54843 11 85114148 NM_206927 NP_996810 A/G M334V minus 24210842 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5874 rs580459 SYTL2 54843 11 85114148 NM_206928 NP_996811 A/G M334V minus 5561313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5875 rs580459 SYTL2 54843 11 85114148 NM_206928 NP_996811 A/G M334V minus 24210842 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5876 rs580459 SYTL2 54843 11 85114148 NM_206928 NP_996811 A/G M334V minus 24210842 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5877 rs580459 SYTL2 54843 11 85114148 NM_206928 NP_996811 A/G M334V minus 24210842 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 5878 rs581157 IREM2 342510 17 70125184 NM_181449 NP_852114 G/T K19T plus 752704 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.42 123 "HapMap,doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 5879 rs581157 IREM2 342510 17 70125184 NM_181449 NP_852114 G/T K19T plus 24558713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 5880 rs581157 IREM2 342510 17 70125184 NM_181449 NP_852114 G/T K19T plus 24558713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 5881 rs581157 IREM2 342510 17 70125184 NM_181449 NP_852114 G/T K19T plus 24558713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 5882 rs583903 CLEC2 51266 12 10041118 NM_016509 NP_057593 A/G G64D minus 755505 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "by cluster,freq" 12p13.31 C-type lectin-like receptor-2 5883 rs583903 CLEC2 51266 12 10041118 NM_016509 NP_057593 A/G G64D minus 755505 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by cluster,freq" 12p13.31 C-type lectin-like receptor-2 5884 rs583903 CLEC2 51266 12 10041118 NM_016509 NP_057593 A/G G64D minus 755505 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "by cluster,freq" 12p13.31 C-type lectin-like receptor-2 5885 rs584367 PLA2G2D 26279 1 20187360 NM_012400 NP_036532 C/T S80G plus 1958114 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 1p36.12 "phospholipase A2, group IID" 5886 rs584367 PLA2G2D 26279 1 20187360 NM_012400 NP_036532 C/T S80G plus 3210305 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.31 123 "by doubleHit,submitter,freq,cluster" 1p36.12 "phospholipase A2, group IID" 5887 rs584367 PLA2G2D 26279 1 20187360 NM_012400 NP_036532 C/T S80G plus 24236283 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 1p36.12 "phospholipase A2, group IID" 5888 rs584367 PLA2G2D 26279 1 20187360 NM_012400 NP_036532 C/T S80G plus 24236283 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 1p36.12 "phospholipase A2, group IID" 5889 rs584367 PLA2G2D 26279 1 20187360 NM_012400 NP_036532 C/T S80G plus 24236283 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p36.12 "phospholipase A2, group IID" 5890 rs586024 GPR116 221395 6 46942644 NM_015234 NP_056049 C/T T604M minus 757686 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 6p21.1 G protein-coupled receptor 116 5891 rs586178 RHD 6007 1 25344402 NM_016124 NP_057208 C/G W16C plus 2987098 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.33 123 "by cluster,freq" 1p36.11 "Rhesus blood group, D antigen" 5892 rs586178 RHD 6007 1 25344402 NM_016124 NP_057208 C/G W16C plus 24817600 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by cluster,freq" 1p36.11 "Rhesus blood group, D antigen" 5893 rs586178 RHD 6007 1 25344402 NM_016225 NP_057309 C/G W16C plus 2987098 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.33 123 "by cluster,freq" 1p36.11 "Rhesus blood group, D antigen" 5894 rs586178 RHD 6007 1 25344402 NM_016225 NP_057309 C/G W16C plus 24817600 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by cluster,freq" 1p36.11 "Rhesus blood group, D antigen" 5895 rs586339 JMJD2A 9682 1 43806350 NM_014663 NP_055478 G/T A482E minus 1986654 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 1p34.1 jumonji domain containing 2A 5896 rs586339 JMJD2A 9682 1 43806350 NM_014663 NP_055478 G/T A482E minus 3210258 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.28 123 "by doubleHit,freq,cluster" 1p34.1 jumonji domain containing 2A 5897 rs586339 JMJD2A 9682 1 43806350 NM_014663 NP_055478 G/T A482E minus 24242998 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,freq,cluster" 1p34.1 jumonji domain containing 2A 5898 rs586339 JMJD2A 9682 1 43806350 NM_014663 NP_055478 G/T A482E minus 24242998 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 1p34.1 jumonji domain containing 2A 5899 rs586339 JMJD2A 9682 1 43806350 NM_014663 NP_055478 G/T A482E minus 24242998 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 1p34.1 jumonji domain containing 2A 5900 rs587404 MACF1 23499 1 39577599 NM_012090 NP_036222 A/G A4350T plus 759087 1303 SEQUENOM CEPH CEPH (92) 92 0.45 119 "by doubleHit,submitter,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 5901 rs587404 MACF1 23499 1 39577599 NM_033044 NP_149033 A/G A4852T plus 759087 1303 SEQUENOM CEPH CEPH (92) 92 0.45 119 "by doubleHit,submitter,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 5902 rs589623 DNCH2 79659 11 102587800 XM_370652 XP_370652 C/T R2871Q minus 23560235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 5903 rs589623 DNCH2 79659 11 102587800 XM_370652 XP_370652 C/T R2871Q minus 23560235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 5904 rs589623 DNCH2 79659 11 102587800 XM_370652 XP_370652 C/T R2871Q minus 23560235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 5905 rs590787 RHD 6007 1 25375259 NM_016124 NP_057208 C/T Y311C minus 24796070 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 1p36.11 "Rhesus blood group, D antigen" 5906 rs590787 RHD 6007 1 25375259 NM_016225 NP_057309 C/T Y311C minus 24796070 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 1p36.11 "Rhesus blood group, D antigen" 5907 rs590813 RHD 6007 1 25375243 NM_016124 NP_057208 C/T V306I minus 24796069 1303 SEQUENOM CEPH CEPH (92) 184 0.34 123 by freq 1p36.11 "Rhesus blood group, D antigen" 5908 rs590813 RHD 6007 1 25375243 NM_016225 NP_057309 C/T V306I minus 24796069 1303 SEQUENOM CEPH CEPH (92) 184 0.34 123 by freq 1p36.11 "Rhesus blood group, D antigen" 5909 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 1189666 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.34 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5910 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 1189666 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.44 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5911 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 1189666 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.44 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5912 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 5000059 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1302 0.45 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5913 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 20572189 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5914 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 24630197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5915 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 24630197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5916 rs591120 RGPR 89866 1 174634410 NM_033127 NP_149118 C/G P864A plus 24630197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1q24.3 regucalcin gene promotor region related protein 5917 rs592121 COL9A1 1297 6 71041157 NM_001851 NP_001842 A/G S339P plus 1712693 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5918 rs592121 COL9A1 1297 6 71041157 NM_001851 NP_001842 A/G S339P plus 3210418 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.37 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5919 rs592121 COL9A1 1297 6 71041157 NM_001851 NP_001842 A/G S339P plus 24374666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5920 rs592121 COL9A1 1297 6 71041157 NM_001851 NP_001842 A/G S339P plus 24374666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5921 rs592121 COL9A1 1297 6 71041157 NM_001851 NP_001842 A/G S339P plus 24374666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5922 rs592121 COL9A1 1297 6 71041157 NM_078485 NP_511040 A/G S96P plus 1712693 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5923 rs592121 COL9A1 1297 6 71041157 NM_078485 NP_511040 A/G S96P plus 3210418 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.37 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5924 rs592121 COL9A1 1297 6 71041157 NM_078485 NP_511040 A/G S96P plus 24374666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5925 rs592121 COL9A1 1297 6 71041157 NM_078485 NP_511040 A/G S96P plus 24374666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5926 rs592121 COL9A1 1297 6 71041157 NM_078485 NP_511040 A/G S96P plus 24374666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q12-q14 "collagen, type IX, alpha 1" 5927 rs592644 PGM2L1 283209 11 73731195 NM_173582 NP_775853 C/T V531I plus 3205191 738 YUSUKE JBIC-ALLELE Japanese (752) 866 0.24 121 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 phosphoglucomutase 2-like 1 5928 rs592644 PGM2L1 283209 11 73731195 NM_173582 NP_775853 C/T V531I plus 5186152 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 phosphoglucomutase 2-like 1 5929 rs592644 PGM2L1 283209 11 73731195 NM_173582 NP_775853 C/T V531I plus 5186152 1303 SEQUENOM CEPH CEPH (92) 92 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 11q13.3 phosphoglucomutase 2-like 1 5930 rs593747 ZBTB10 65986 8 81562122 NM_023929 NP_076418 A/G M174I plus 765563 1303 SEQUENOM CEPH CEPH (92) 92 0.03 83 by freq 8q13-q21.1 zinc finger and BTB domain containing 10 5931 rs593818 CYP4F12 66002 19 15668884 NM_023944 NP_076433 A/G S522G plus 765638 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 5932 rs593818 CYP4F12 66002 19 15668884 NM_023944 NP_076433 A/G S522G plus 23580674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 5933 rs593818 CYP4F12 66002 19 15668884 NM_023944 NP_076433 A/G S522G plus 23580674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 5934 rs593818 CYP4F12 66002 19 15668884 NM_023944 NP_076433 A/G S522G plus 23580674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 5935 rs594445 MOCOS 55034 18 32085187 NM_017947 NP_060417 A/C H703N plus 766287 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 5936 rs594445 MOCOS 55034 18 32085187 NM_017947 NP_060417 A/C H703N plus 4923371 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.25 123 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 5937 rs594445 MOCOS 55034 18 32085187 NM_017947 NP_060417 A/C H703N plus 24508367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 5938 rs594445 MOCOS 55034 18 32085187 NM_017947 NP_060417 A/C H703N plus 24508367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 5939 rs594445 MOCOS 55034 18 32085187 NM_017947 NP_060417 A/C H703N plus 24508367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 5940 rs594495 GCNT2 2651 6 10694915 NM_145655 NP_663630 A/G H236R plus 3103186 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "by doubleHit,cluster" 6p24 "glucosaminyl (N-acetyl) transferase 2, I-branching enzyme" 5941 rs597306 SLC4A3 6508 2 220319623 NM_005070 NP_005061 A/C H157P plus 769189 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5942 rs597306 SLC4A3 6508 2 220319623 NM_005070 NP_005061 A/C H157P plus 769189 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5943 rs597306 SLC4A3 6508 2 220319623 NM_005070 NP_005061 A/C H157P plus 9948534 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5944 rs597306 SLC4A3 6508 2 220319623 NM_201574 NP_963868 A/C H157P plus 769189 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5945 rs597306 SLC4A3 6508 2 220319623 NM_201574 NP_963868 A/C H157P plus 769189 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5946 rs597306 SLC4A3 6508 2 220319623 NM_201574 NP_963868 A/C H157P plus 9948534 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 5947 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 769366 901 AFFY AfAm 6 0.5 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5948 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 769366 902 AFFY Caucasian 24 0.46 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5949 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 769366 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5950 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 769366 904 AFFY CEPH 12 0.42 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5951 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 769366 905 AFFY PDpanel 48 0.48 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5952 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 24210844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5953 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 24210844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5954 rs597480 SYTL2 54843 11 85114516 NM_206927 NP_996810 C/G A211G minus 24210844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5955 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 769366 901 AFFY AfAm 6 0.5 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5956 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 769366 902 AFFY Caucasian 24 0.46 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5957 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 769366 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5958 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 769366 904 AFFY CEPH 12 0.42 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5959 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 769366 905 AFFY PDpanel 48 0.48 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5960 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 24210844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5961 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 24210844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5962 rs597480 SYTL2 54843 11 85114516 NM_206928 NP_996811 C/G A211G minus 24210844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q14 synaptotagmin-like 2 5963 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 769458 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5964 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 769458 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5965 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 769458 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5966 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 769458 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5967 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 769458 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5968 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 4926904 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5969 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 16510765 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5970 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 23641456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5971 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 23641456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5972 rs597570 FEZ1 9638 11 124856682 NM_005103 NP_005094 A/T D123E minus 23641456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 fasciculation and elongation protein zeta 1 (zygin I) 5973 rs600753 DYX1C1 161582 15 53546485 NM_130810 NP_570722 C/T E191G plus 3233091 738 YUSUKE JBIC-ALLELE Japanese (752) 1432 0.29 121 "HapMap,doubleHit,freq,cluster" 15q21.1 dyslexia susceptibility 1 candidate 1 5974 rs600753 DYX1C1 161582 15 53546485 NM_130810 NP_570722 C/T E191G plus 4093672 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.38 121 "HapMap,doubleHit,freq,cluster" 15q21.1 dyslexia susceptibility 1 candidate 1 5975 rs600753 DYX1C1 161582 15 53546485 NM_130810 NP_570722 C/T E191G plus 4093672 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "HapMap,doubleHit,freq,cluster" 15q21.1 dyslexia susceptibility 1 candidate 1 5976 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 773287 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5977 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 773287 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5978 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 773287 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5979 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 773287 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5980 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 23596229 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5981 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 23596229 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5982 rs601314 EFEMP2 30008 11 65392629 NM_016938 NP_058634 C/T I259V plus 23596229 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 EGF-containing fibulin-like extracellular matrix protein 2 5983 rs602662 FUT2 2524 19 53898797 NM_000511 NP_000502 A/G G261S plus 24532799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 5984 rs602662 FUT2 2524 19 53898797 NM_000511 NP_000502 A/G G261S plus 24532799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 5985 rs602662 FUT2 2524 19 53898797 NM_000511 NP_000502 A/G G261S plus 24532799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 5986 rs602990 VAV2 7410 9 133673548 NM_003371 NP_003362 C/T M584V plus 2835292 1303 SEQUENOM CEPH CEPH (92) 92 0.49 119 "by doubleHit,freq" 9q34.1 vav 2 oncogene 5987 rs605059 HSD17B1 3292 17 37960432 NM_000413 NP_000404 C/T G313S minus 777110 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 121 "by doubleHit,freq,cluster" 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 5988 rs605059 HSD17B1 3292 17 37960432 NM_000413 NP_000404 C/T G313S minus 777110 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 121 "by doubleHit,freq,cluster" 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 5989 rs605059 HSD17B1 3292 17 37960432 NM_000413 NP_000404 C/T G313S minus 777110 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 121 "by doubleHit,freq,cluster" 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 5990 rs605059 HSD17B1 3292 17 37960432 NM_000413 NP_000404 C/T G313S minus 3176234 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.29 121 "by doubleHit,freq,cluster" 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 5991 rs605059 HSD17B1 3292 17 37960432 NM_000413 NP_000404 C/T G313S minus 16745938 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "by doubleHit,freq,cluster" 17q11-q21 hydroxysteroid (17-beta) dehydrogenase 1 5992 rs605734 OR5M3 219482 11 55994298 XM_166834 XP_166834 A/T L84F minus 2774771 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 121 "HapMap,submitter,freq" 11q12.1 "olfactory receptor, family 5, subfamily M, member 3" 5993 rs606830 CTSW 1521 11 65406859 NM_001335 NP_001326 A/G Q218R plus 778915 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 123 "HapMap,freq" 11q13.1 cathepsin W (lymphopain) 5994 rs606830 CTSW 1521 11 65406859 NM_001335 NP_001326 A/G Q218R plus 778915 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 1 123 "HapMap,freq" 11q13.1 cathepsin W (lymphopain) 5995 rs606830 CTSW 1521 11 65406859 NM_001335 NP_001326 A/G Q218R plus 778915 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,freq" 11q13.1 cathepsin W (lymphopain) 5996 rs606830 CTSW 1521 11 65406859 NM_001335 NP_001326 A/G Q218R plus 778915 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 11q13.1 cathepsin W (lymphopain) 5997 rs607159 MEF2C 4208 5 88054196 NM_002397 NP_002388 A/G S468F plus 2194091 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 5q14 "MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)" 5998 rs607159 MEF2C 4208 5 88054196 NM_002397 NP_002388 A/G S468F plus 2194091 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 5q14 "MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)" 5999 rs607230 LAMA1 284217 18 6970523 NM_005559 NP_005550 C/T K2002E plus 779323 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 18p11.23 "laminin, alpha 1" 6000 rs607567 MICL 160364 12 10022951 NM_201625 NP_963919 A/C C71G minus 23786563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 6001 rs607567 MICL 160364 12 10022951 NM_201625 NP_963919 A/C C71G minus 23786563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 6002 rs607567 MICL 160364 12 10022951 NM_201625 NP_963919 A/C C71G minus 23786563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 12p13.31 myeloid inhibitory C-type lectin-like receptor 6003 rs608339 GBP4 115361 1 89364099 NM_052941 NP_443173 A/T L549M plus 780455 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by doubleHit 1p22.2 guanylate binding protein 4 6004 rs608433 ZNF236 7776 18 72740115 NM_007345 NP_031371 C/T I613V minus 780552 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22-q23 zinc finger protein 236 6005 rs608433 ZNF236 7776 18 72740115 NM_007345 NP_031371 C/T I613V minus 780552 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22-q23 zinc finger protein 236 6006 rs608433 ZNF236 7776 18 72740115 NM_007345 NP_031371 C/T I613V minus 24107976 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22-q23 zinc finger protein 236 6007 rs608433 ZNF236 7776 18 72740115 NM_007345 NP_031371 C/T I613V minus 24107976 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22-q23 zinc finger protein 236 6008 rs608433 ZNF236 7776 18 72740115 NM_007345 NP_031371 C/T I613V minus 24107976 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22-q23 zinc finger protein 236 6009 rs608620 PCSK7 9159 11 116582219 NM_004716 NP_004707 G/T L688V minus 4079307 1303 SEQUENOM CEPH CEPH (92) 92 0.33 113 "by doubleHit,freq" 11q23-q24 proprotein convertase subtilisin/kexin type 7 6010 rs609290 CYP4F12 66002 19 15650140 NM_023944 NP_076433 C/T I90V minus 781430 1303 SEQUENOM CEPH CEPH (92) 92 0.09 83 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 6011 rs609521 LAP1B 26092 1 176608645 NM_015602 NP_056417 C/G P276R plus 23687638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 6012 rs609521 LAP1B 26092 1 176608645 NM_015602 NP_056417 C/G P276R plus 23687638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 6013 rs609521 LAP1B 26092 1 176608645 NM_015602 NP_056417 C/G P276R plus 23687638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 6014 rs609636 CYP4F12 66002 19 15650098 NM_023944 NP_076433 C/T N76D minus 781784 1303 SEQUENOM CEPH CEPH (92) 92 0.11 83 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 6015 rs609805 SCNN1D 6339 1 1266812 NM_002978 NP_002969 A/G G606R plus 781956 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.14 121 "by doubleHit,freq,cluster" 1p36.3-p36.2 "sodium channel, nonvoltage-gated 1, delta" 6016 rs609805 SCNN1D 6339 1 1266812 NM_002978 NP_002969 A/G G606R plus 781956 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 121 "by doubleHit,freq,cluster" 1p36.3-p36.2 "sodium channel, nonvoltage-gated 1, delta" 6017 rs609805 SCNN1D 6339 1 1266812 NM_002978 NP_002969 A/G G606R plus 781956 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 121 "by doubleHit,freq,cluster" 1p36.3-p36.2 "sodium channel, nonvoltage-gated 1, delta" 6018 rs609805 SCNN1D 6339 1 1266812 NM_002978 NP_002969 A/G G606R plus 781956 1303 SEQUENOM CEPH CEPH (92) 92 0.05 121 "by doubleHit,freq,cluster" 1p36.3-p36.2 "sodium channel, nonvoltage-gated 1, delta" 6019 rs609805 SCNN1D 6339 1 1266812 NM_002978 NP_002969 A/G G606R plus 3176890 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.11 121 "by doubleHit,freq,cluster" 1p36.3-p36.2 "sodium channel, nonvoltage-gated 1, delta" 6020 rs610308 PPP1R15A 23645 19 54069131 NM_014330 NP_055145 C/T K277E minus 782465 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 6021 rs610308 PPP1R15A 23645 19 54069131 NM_014330 NP_055145 C/T K277E minus 4931714 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.12 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 6022 rs611251 PPP1R15A 23645 19 54068898 NM_014330 NP_055145 A/G V199A minus 5013301 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.07 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 6023 rs611251 PPP1R15A 23645 19 54068898 NM_014330 NP_055145 A/G V199A minus 5163966 1303 SEQUENOM CEPH CEPH (92) 92 0.16 120 "by doubleHit,freq,cluster" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 6024 rs612593 CLEC2 51266 12 10042909 NM_016509 NP_057593 A/G I20V minus 784802 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 12p13.31 C-type lectin-like receptor-2 6025 rs612593 CLEC2 51266 12 10042909 NM_016509 NP_057593 A/G I20V minus 2592508 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,cluster" 12p13.31 C-type lectin-like receptor-2 6026 rs612593 CLEC2 51266 12 10042909 NM_016509 NP_057593 A/G I20V minus 2592508 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 121 "HapMap,cluster" 12p13.31 C-type lectin-like receptor-2 6027 rs612593 CLEC2 51266 12 10042909 NM_016509 NP_057593 A/G I20V minus 2592508 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "HapMap,cluster" 12p13.31 C-type lectin-like receptor-2 6028 rs612969 TECTA 7007 11 120494545 NM_005422 NP_005413 A/G R371G plus 785188 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 121 "HapMap,doubleHit,freq,cluster" 11q22-q24 tectorin alpha 6029 rs612969 TECTA 7007 11 120494545 NM_005422 NP_005413 A/G R371G plus 785188 1303 SEQUENOM CEPH CEPH (92) 92 0.24 121 "HapMap,doubleHit,freq,cluster" 11q22-q24 tectorin alpha 6030 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 2909636 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6031 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 2909636 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6032 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 3246998 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.47 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6033 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 24587840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6034 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 24587840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6035 rs615942 COASY 80347 17 37968330 NM_025233 NP_079509 G/T S55Y minus 24587840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 Coenzyme A synthase 6036 rs616114 MEP1B 4225 18 28051919 NM_005925 NP_005916 A/G P695L minus 788399 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,submitter,freq,cluster" 18q12.2-q12.3 "meprin A, beta" 6037 rs616114 MEP1B 4225 18 28051919 NM_005925 NP_005916 A/G P695L minus 3197976 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.32 123 "HapMap,submitter,freq,cluster" 18q12.2-q12.3 "meprin A, beta" 6038 rs616114 MEP1B 4225 18 28051919 NM_005925 NP_005916 A/G P695L minus 24687373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 18q12.2-q12.3 "meprin A, beta" 6039 rs616114 MEP1B 4225 18 28051919 NM_005925 NP_005916 A/G P695L minus 24687373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,submitter,freq,cluster" 18q12.2-q12.3 "meprin A, beta" 6040 rs616114 MEP1B 4225 18 28051919 NM_005925 NP_005916 A/G P695L minus 24687373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 18q12.2-q12.3 "meprin A, beta" 6041 rs616235 F2RL1 2150 5 76164277 NM_005242 NP_005233 C/T S30N minus 10189932 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 6042 rs616235 F2RL1 2150 5 76164277 NM_005242 NP_005233 C/T S30N minus 24135797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 6043 rs616235 F2RL1 2150 5 76164277 NM_005242 NP_005233 C/T S30N minus 24135797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 6044 rs616235 F2RL1 2150 5 76164277 NM_005242 NP_005233 C/T S30N minus 24135797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 6045 rs616634 STK19 8859 6 32056427 NM_004197 NP_004188 C/T S307G minus 24787492 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "by doubleHit,cluster" 6p21.3 serine/threonine kinase 19 6046 rs616634 STK19 8859 6 32056427 NM_032454 NP_115830 C/T S311G minus 24787492 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "by doubleHit,cluster" 6p21.3 serine/threonine kinase 19 6047 rs618838 ACTN3 89 11 66085295 NM_001104 NP_001095 C/T C628R plus 3172997 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.13 120 "by doubleHit,freq,cluster" 11q13-q14 "actinin, alpha 3" 6048 rs618838 ACTN3 89 11 66085295 NM_001104 NP_001095 C/T C628R plus 5002906 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.5 120 "by doubleHit,freq,cluster" 11q13-q14 "actinin, alpha 3" 6049 rs619203 ROS1 6098 6 117728877 NM_002944 NP_002935 C/G S2229C minus 791558 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 6050 rs619203 ROS1 6098 6 117728877 NM_002944 NP_002935 C/G S2229C minus 24370589 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 6051 rs619203 ROS1 6098 6 117728877 NM_002944 NP_002935 C/G S2229C minus 24370589 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 6052 rs619203 ROS1 6098 6 117728877 NM_002944 NP_002935 C/G S2229C minus 24370589 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 6053 rs621679 LSP1 4046 11 1859344 NM_002339 NP_002330 A/G A100T plus 794088 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 11p15.5 lymphocyte-specific protein 1 6054 rs622082 IGHMBP2 3508 11 68460535 NM_002180 NP_002171 A/G T671A plus 3172863 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.3 120 "by doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 6055 rs622082 IGHMBP2 3508 11 68460535 NM_002180 NP_002171 A/G T671A plus 3191121 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.21 120 "by doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 6056 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 795481 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6057 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 795481 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6058 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 4930909 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6059 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 23751463 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6060 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 23751463 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6061 rs623053 MOCOS 55034 18 32033853 NM_017947 NP_060417 C/T T170I plus 23751463 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 6062 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 795993 686 TSC-SANGER SC_12_A CORIELL African American (12) 16 0.45 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6063 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 795993 771 TSC-CSHL SC_12_A CORIELL Asian (12) 11 0.5 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6064 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 795993 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6065 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 795993 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6066 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 2863159 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6067 rs623558 MOCOS 55034 18 32034018 NM_017947 NP_060417 A/G H225R plus 2863159 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6068 rs625372 SN 6614 20 3632729 NM_023068 NP_075556 A/G K239R minus 4990347 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1312 0.34 121 "by doubleHit,freq,cluster" 20p13 sialoadhesin 6069 rs626578 CNTN3 5067 3 74431752 XM_039627 XP_039627 C/T N716S plus 1959136 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by submitter,freq,cluster" 3p26 contactin 3 (plasmacytoma associated) 6070 rs626578 CNTN3 5067 3 74431752 XM_039627 XP_039627 C/T N716S plus 23946735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 3p26 contactin 3 (plasmacytoma associated) 6071 rs626578 CNTN3 5067 3 74431752 XM_039627 XP_039627 C/T N716S plus 23946735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 3p26 contactin 3 (plasmacytoma associated) 6072 rs626578 CNTN3 5067 3 74431752 XM_039627 XP_039627 C/T N716S plus 23946735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq,cluster" 3p26 contactin 3 (plasmacytoma associated) 6073 rs627441 DLAT 1737 11 111413372 NM_001931 NP_001922 A/G V318A minus 799946 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 120 "HapMap,doubleHit,submitter,freq" 11q23.1 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 6074 rs627441 DLAT 1737 11 111413372 NM_001931 NP_001922 A/G V318A minus 799946 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "HapMap,doubleHit,submitter,freq" 11q23.1 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 6075 rs627530 STK11IP 114790 2 220301948 NM_052902 NP_443134 C/T S752F plus 800036 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6076 rs627530 STK11IP 114790 2 220301948 NM_052902 NP_443134 C/T S752F plus 800036 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6077 rs627530 STK11IP 114790 2 220301948 NM_052902 NP_443134 C/T S752F plus 23248963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6078 rs627530 STK11IP 114790 2 220301948 NM_052902 NP_443134 C/T S752F plus 23248963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6079 rs627530 STK11IP 114790 2 220301948 NM_052902 NP_443134 C/T S752F plus 23248963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6080 rs627928 RNASEL 6041 1 179282994 NM_021133 NP_066956 G/T D541E minus 19095328 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by doubleHit,submitter,freq,cluster" 1q25 "ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" 6081 rs628031 SLC22A1 6580 6 160531256 NM_003057 NP_003048 A/G M408V plus 800541 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6082 rs628031 SLC22A1 6580 6 160531256 NM_003057 NP_003048 A/G M408V plus 24508696 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6083 rs628031 SLC22A1 6580 6 160531256 NM_003057 NP_003048 A/G M408V plus 24508696 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6084 rs628031 SLC22A1 6580 6 160531256 NM_003057 NP_003048 A/G M408V plus 24508696 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6085 rs628031 SLC22A1 6580 6 160531256 NM_153187 NP_694857 A/G M408V plus 800541 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6086 rs628031 SLC22A1 6580 6 160531256 NM_153187 NP_694857 A/G M408V plus 24508696 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6087 rs628031 SLC22A1 6580 6 160531256 NM_153187 NP_694857 A/G M408V plus 24508696 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6088 rs628031 SLC22A1 6580 6 160531256 NM_153187 NP_694857 A/G M408V plus 24508696 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6089 rs629682 AOC3 8639 17 38257563 NM_003734 NP_003725 C/T W226X minus 802226 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.35 108 HapMap 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6090 rs629682 AOC3 8639 17 38257563 NM_003734 NP_003725 C/T W226X minus 802226 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 108 HapMap 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6091 rs629682 AOC3 8639 17 38257563 NM_003734 NP_003725 C/T W226X minus 802226 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.42 108 HapMap 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6092 rs629682 AOC3 8639 17 38257563 NM_003734 NP_003725 C/T W226X minus 5376517 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 HapMap 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6093 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 802398 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.15 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6094 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 802398 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6095 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 802398 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 1 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6096 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 802398 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.06 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6097 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 959503 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.23 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6098 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 959503 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6099 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 959503 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6100 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 959503 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 182 0.16 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6101 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 3220937 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.17 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6102 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 8819763 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.16 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6103 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 8819763 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.2 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6104 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 8819763 776 SNP500CANCER AFR1 African / African-American (24) 46 0.02 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6105 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 8819763 777 SNP500CANCER HISP1 Hispanic (23) 42 0.14 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6106 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 8819763 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6107 rs629849 IGF2R 3482 6 160464820 NM_000876 NP_000867 A/G R1619G plus 12585908 693 EGP_SNPS PDR90 NIHPDR 180 0.11 123 "by doubleHit,freq,cluster" 6q26 insulin-like growth factor 2 receptor 6108 rs629976 IL28B 282617 19 44427365 NM_172139 NP_742151 A/G R28H minus 802528 1303 SEQUENOM CEPH CEPH (92) 92 0.35 103 by freq 19q13.13 "interleukin 28B (interferon, lambda 3)" 6109 rs630079 AOC3 8639 17 38257494 NM_003734 NP_003725 C/T H203R minus 3311445 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.37 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6110 rs630079 AOC3 8639 17 38257494 NM_003734 NP_003725 C/T H203R minus 3311445 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.42 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6111 rs630079 AOC3 8639 17 38257494 NM_003734 NP_003725 C/T H203R minus 3311445 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.37 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6112 rs630079 AOC3 8639 17 38257494 NM_003734 NP_003725 C/T H203R minus 24796535 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 6113 rs630162 PCDHA10 56139 5 140217732 NM_018901 NP_061724 C/T T639A minus 802717 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 6114 rs630162 PCDHA10 56139 5 140217732 NM_031859 NP_114065 C/T T639A minus 802717 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 10 6115 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 803940 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6116 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 803940 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6117 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 803940 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.17 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6118 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 803940 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.15 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6119 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 3240256 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.46 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6120 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 23842786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6121 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 23842786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6122 rs631357 KIF17 57576 1 20738125 NM_020816 NP_065867 C/G D933E minus 23842786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1p36.12 kinesin family member 17 6123 rs634222 LILRB1 10859 19 59840048 NM_006669 NP_006660 A/C L620F minus 806874 686 TSC-SANGER SC_12_A CORIELL African American (12) 11 0.5 83 "HapMap,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 6124 rs634222 LILRB1 10859 19 59840048 NM_006669 NP_006660 A/C L620F minus 806874 771 TSC-CSHL SC_12_A CORIELL Asian (12) 11 0.5 83 "HapMap,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 6125 rs634222 LILRB1 10859 19 59840048 NM_006669 NP_006660 A/C L620F minus 806874 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 83 "HapMap,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 6126 rs634501 MGAT1 4245 5 180151274 NM_002406 NP_002397 A/G L435P plus 807160 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 120 "HapMap,doubleHit,freq,cluster" 5q35 "mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase" 6127 rs634501 MGAT1 4245 5 180151274 NM_002406 NP_002397 A/G L435P plus 807160 1303 SEQUENOM CEPH CEPH (92) 92 0.23 120 "HapMap,doubleHit,freq,cluster" 5q35 "mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase" 6128 rs635311 SLC4A3 6508 2 220327872 NM_005070 NP_005061 A/C D867A plus 807985 1303 SEQUENOM CEPH CEPH (92) 92 0.45 100 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 6129 rs635311 SLC4A3 6508 2 220327872 NM_005070 NP_005061 A/C D867A plus 3231413 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.17 100 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 6130 rs635311 SLC4A3 6508 2 220327872 NM_201574 NP_963868 A/C D894A plus 807985 1303 SEQUENOM CEPH CEPH (92) 92 0.45 100 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 6131 rs635311 SLC4A3 6508 2 220327872 NM_201574 NP_963868 A/C D894A plus 3231413 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.17 100 "by cluster,freq" 2q36 "solute carrier family 4, anion exchanger, member 3" 6132 rs637186 CD5 921 11 60649182 NM_014207 NP_055022 A/G H461R plus 809905 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq,cluster" 11q13 CD5 antigen (p56-62) 6133 rs637186 CD5 921 11 60649182 NM_014207 NP_055022 A/G H461R plus 24569935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 11q13 CD5 antigen (p56-62) 6134 rs637186 CD5 921 11 60649182 NM_014207 NP_055022 A/G H461R plus 24569935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 11q13 CD5 antigen (p56-62) 6135 rs637186 CD5 921 11 60649182 NM_014207 NP_055022 A/G H461R plus 24569935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11q13 CD5 antigen (p56-62) 6136 rs638043 KRT2A 3849 12 51330534 NM_000423 NP_000414 C/T G219D plus 2200757 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 by freq 12q11-q13 keratin 2A (epidermal ichthyosis bullosa of Siemens) 6137 rs638043 KRT2A 3849 12 51330534 NM_000423 NP_000414 C/T G219D plus 24388531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 by freq 12q11-q13 keratin 2A (epidermal ichthyosis bullosa of Siemens) 6138 rs638043 KRT2A 3849 12 51330534 NM_000423 NP_000414 C/T G219D plus 24388531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 12q11-q13 keratin 2A (epidermal ichthyosis bullosa of Siemens) 6139 rs638043 KRT2A 3849 12 51330534 NM_000423 NP_000414 C/T G219D plus 24388531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 12q11-q13 keratin 2A (epidermal ichthyosis bullosa of Siemens) 6140 rs641081 AIP 9049 11 67014399 NM_003977 NP_003968 G/T Q228K minus 813868 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 11q13.3 aryl hydrocarbon receptor interacting protein 6141 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 5606986 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.27 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6142 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 5606986 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 28 0.11 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6143 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 5606986 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6144 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 12674483 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.27 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6145 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 12674483 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6146 rs641153 BF 629 6 32022159 NM_001710 NP_001701 C/T R32Q minus 24796283 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 "by doubleHit,freq,cluster" 6p21.3 "B-factor, properdin" 6147 rs641320 FAIM 55179 3 139830655 NM_018147 NP_060617 C/T A117T minus 3302357 1303 SEQUENOM CEPH CEPH (92) 91 0.05 123 "by submitter,freq,cluster" 3q22.3 Fas apoptotic inhibitory molecule 6148 rs641320 FAIM 55179 3 139830655 NM_018147 NP_060617 C/T A117T minus 23673660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by submitter,freq,cluster" 3q22.3 Fas apoptotic inhibitory molecule 6149 rs641320 FAIM 55179 3 139830655 NM_018147 NP_060617 C/T A117T minus 23673660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "by submitter,freq,cluster" 3q22.3 Fas apoptotic inhibitory molecule 6150 rs641320 FAIM 55179 3 139830655 NM_018147 NP_060617 C/T A117T minus 23673660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 3q22.3 Fas apoptotic inhibitory molecule 6151 rs641393 SYTL2 54843 11 85114000 NM_206927 NP_996810 A/G T383M plus 24210840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6152 rs641393 SYTL2 54843 11 85114000 NM_206927 NP_996810 A/G T383M plus 24210840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6153 rs641393 SYTL2 54843 11 85114000 NM_206927 NP_996810 A/G T383M plus 24210840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6154 rs641393 SYTL2 54843 11 85114000 NM_206928 NP_996811 A/G T383M plus 24210840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6155 rs641393 SYTL2 54843 11 85114000 NM_206928 NP_996811 A/G T383M plus 24210840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6156 rs641393 SYTL2 54843 11 85114000 NM_206928 NP_996811 A/G T383M plus 24210840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 11q14 synaptotagmin-like 2 6157 rs641738 TMC4 147798 19 59368575 NM_144686 NP_653287 C/T G17E plus 1685853 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.47 87 "HapMap,freq" 19q13.42 transmembrane channel-like 4 6158 rs643423 NOD9 79671 11 118548866 NM_024618 NP_078894 A/G P63S minus 816246 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,freq,cluster" 11q23.3 NOD9 protein 6159 rs643423 NOD9 79671 11 118548866 NM_170722 NP_733840 A/G P63S minus 816246 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,freq,cluster" 11q23.3 NOD9 protein 6160 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 816617 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.44 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6161 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 816617 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.11 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6162 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 816617 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 8 0.5 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6163 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 816617 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6164 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 816617 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6165 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 3191130 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.39 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6166 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 24327506 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6167 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 24327506 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6168 rs643788 DPAGT1 1798 11 118472968 NM_001382 NP_001373 C/T I393V plus 24327506 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.4 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6169 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 816617 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.44 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6170 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 816617 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.11 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6171 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 816617 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 8 0.5 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6172 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 816617 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6173 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 816617 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6174 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 3191130 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.39 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6175 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 24327506 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6176 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 24327506 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6177 rs643788 DPAGT1 1798 11 118472968 NM_203316 NP_976061 C/T I286V plus 24327506 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.4 123 "HapMap,doubleHit,freq,cluster" 11q23.3 dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 6178 rs647224 RGSL2 84227 1 179174671 NM_032267 NP_115643 C/G W291C plus 820116 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1q25.2 regulator of G-protein signalling like 2 6179 rs647224 RGSL2 84227 1 179174671 NM_032267 NP_115643 C/G W291C plus 24153793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q25.2 regulator of G-protein signalling like 2 6180 rs647224 RGSL2 84227 1 179174671 NM_032267 NP_115643 C/G W291C plus 24153793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 1q25.2 regulator of G-protein signalling like 2 6181 rs647224 RGSL2 84227 1 179174671 NM_032267 NP_115643 C/G W291C plus 24153793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 1q25.2 regulator of G-protein signalling like 2 6182 rs648802 PERP 64065 6 138455026 NM_022121 NP_071404 C/G P143R plus 3070296 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by doubleHit,submitter,freq,cluster" 6q24 "PERP, TP53 apoptosis effector" 6183 rs649224 ME2 4200 18 46712660 NM_002396 NP_002387 C/T G450E minus 822148 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 116 "HapMap,doubleHit,submitter,freq,cluster" 18q21 "malic enzyme 2, NAD(+)-dependent, mitochondrial" 6184 rs649224 ME2 4200 18 46712660 NM_002396 NP_002387 C/T G450E minus 822148 1303 SEQUENOM CEPH CEPH (92) 92 0.27 116 "HapMap,doubleHit,submitter,freq,cluster" 18q21 "malic enzyme 2, NAD(+)-dependent, mitochondrial" 6185 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.15 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6186 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.33 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6187 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6188 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6189 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 901 AFFY AfAm 24 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6190 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 902 AFFY Caucasian 36 0.28 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6191 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 903 AFFY Asian 40 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6192 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 904 AFFY CEPH 34 0.26 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6193 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 905 AFFY PDpanel 38 0.13 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6194 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 906 AFFY APE 4 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6195 rs652633 ANKRD5 63926 20 9978188 NM_022096 NP_071379 A/T L324Q plus 150335 1303 SEQUENOM CEPH CEPH (92) 92 0.24 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6196 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.15 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6197 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.33 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6198 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6199 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6200 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 901 AFFY AfAm 24 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6201 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 902 AFFY Caucasian 36 0.28 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6202 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 903 AFFY Asian 40 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6203 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 904 AFFY CEPH 34 0.26 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6204 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 905 AFFY PDpanel 38 0.13 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6205 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 906 AFFY APE 4 1 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6206 rs652633 ANKRD5 63926 20 9978188 NM_198798 NP_942093 A/T L324Q plus 150335 1303 SEQUENOM CEPH CEPH (92) 92 0.24 102 "HapMap,doubleHit,freq" 20pter-q11.23 ankyrin repeat domain 5 6207 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 825783 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6208 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 825783 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 1 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6209 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 825783 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6210 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 4924562 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6211 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 19866950 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6212 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 24631886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6213 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 24631886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6214 rs652785 C8A 731 1 57052748 NM_000562 NP_000553 G/T Q93K minus 24631886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 6215 rs653635 CELSR2 1952 1 109518355 NM_001408 NP_001399 A/G Y1639H minus 2814445 1303 SEQUENOM CEPH CEPH (92) 92 0.11 119 "by doubleHit,freq" 1p21 "cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)" 6216 rs655260 GBP4 115361 1 89364123 NM_052941 NP_443173 A/T Y541N plus 828299 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by doubleHit 1p22.2 guanylate binding protein 4 6217 rs657672 ARL12 390790 17 34572591 XM_372668 XP_372668 C/T V52M plus 24114966 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 6218 rs657672 ARL12 390790 17 34572591 XM_372668 XP_372668 C/T V52M plus 24114966 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,submitter,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 6219 rs657672 ARL12 390790 17 34572591 XM_372668 XP_372668 C/T V52M plus 24114966 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.17 123 "by doubleHit,submitter,freq,cluster" 17q21.2 ADP-ribosylation factor-like 12 6220 rs659040 CWF19L2 143884 11 106804841 NM_152434 NP_689647 A/G H289Y plus 5214827 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 121 "HapMap,doubleHit,submitter,freq" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 6221 rs659040 CWF19L2 143884 11 106804841 NM_152434 NP_689647 A/G H289Y plus 5214827 1303 SEQUENOM CEPH CEPH (92) 92 0.19 121 "HapMap,doubleHit,submitter,freq" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 6222 rs660118 SART1 9092 11 65491750 NM_005146 NP_005137 C/G G485A minus 833275 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.22 121 "HapMap,doubleHit,freq,cluster" 11q13.1 squamous cell carcinoma antigen recognised by T cells 6223 rs660118 SART1 9092 11 65491750 NM_005146 NP_005137 C/G G485A minus 833275 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 121 "HapMap,doubleHit,freq,cluster" 11q13.1 squamous cell carcinoma antigen recognised by T cells 6224 rs660118 SART1 9092 11 65491750 NM_005146 NP_005137 C/G G485A minus 833275 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.47 121 "HapMap,doubleHit,freq,cluster" 11q13.1 squamous cell carcinoma antigen recognised by T cells 6225 rs660118 SART1 9092 11 65491750 NM_005146 NP_005137 C/G G485A minus 833275 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.49 121 "HapMap,doubleHit,freq,cluster" 11q13.1 squamous cell carcinoma antigen recognised by T cells 6226 rs660118 SART1 9092 11 65491750 NM_005146 NP_005137 C/G G485A minus 833275 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "HapMap,doubleHit,freq,cluster" 11q13.1 squamous cell carcinoma antigen recognised by T cells 6227 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6228 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.18 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6229 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6230 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 188 0.4 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6231 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6232 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 833497 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6233 rs660339 UCP2 7351 11 73366752 NM_003355 NP_003346 C/T A55V minus 2990934 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.5 120 "HapMap,doubleHit,freq,cluster" 11q13 "uncoupling protein 2 (mitochondrial, proton carrier)" 6234 rs662471 LAMA1 284217 18 6998591 NM_005559 NP_005550 A/G M1340V minus 3086161 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "by doubleHit,freq,cluster" 18p11.23 "laminin, alpha 1" 6235 rs662515 MPPE1 65258 18 11876563 NM_023075 NP_075563 C/G A268P plus 835722 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6236 rs662515 MPPE1 65258 18 11876563 NM_023075 NP_075563 C/G A268P plus 24018535 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6237 rs662515 MPPE1 65258 18 11876563 NM_023075 NP_075563 C/G A268P plus 24018535 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6238 rs662515 MPPE1 65258 18 11876563 NM_023075 NP_075563 C/G A268P plus 24018535 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6239 rs662515 MPPE1 65258 18 11876563 NM_138608 NP_613074 C/G A268P plus 835722 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6240 rs662515 MPPE1 65258 18 11876563 NM_138608 NP_613074 C/G A268P plus 24018535 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6241 rs662515 MPPE1 65258 18 11876563 NM_138608 NP_613074 C/G A268P plus 24018535 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6242 rs662515 MPPE1 65258 18 11876563 NM_138608 NP_613074 C/G A268P plus 24018535 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 18p11.21 metallophosphoesterase 1 6243 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 2832261 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6244 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 2832261 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6245 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 3237839 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6246 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 23584644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6247 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 23584644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6248 rs663048 SEZ6L 23544 22 25019631 NM_021115 NP_066938 G/T M430I plus 23584644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 22q12.1 seizure related 6 homolog (mouse)-like 6249 rs663227 UNC93A 54346 6 167699136 NM_018974 NP_061847 C/T Y387H plus 836450 1303 SEQUENOM CEPH CEPH (92) 92 0.32 83 by freq 6q27 unc-93 homolog A (C. elegans) 6250 rs663606 UNC93A 54346 6 167699185 NM_018974 NP_061847 C/T M403T plus 836836 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by submitter,freq,cluster" 6q27 unc-93 homolog A (C. elegans) 6251 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 837463 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6252 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 837463 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.35 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6253 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 837463 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6254 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 837463 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 84 0.36 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6255 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 1697625 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6256 rs664226 ARL2 402 11 64545770 NM_001667 NP_001658 C/T V141A plus 3178050 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.35 120 "HapMap,doubleHit,freq,cluster" 11q13 ADP-ribosylation factor-like 2 6257 rs665268 TCFL4 6945 17 37975555 NM_170607 NP_733752 A/G Q223R plus 1351337 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 "by submitter,freq,cluster" 17q21.1 transcription factor-like 4 6258 rs665268 TCFL4 6945 17 37975555 NM_198204 NP_937847 A/G Q169R plus 1351337 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 "by submitter,freq,cluster" 17q21.1 transcription factor-like 4 6259 rs665268 TCFL4 6945 17 37975555 NM_198205 NP_937848 A/G Q139R plus 1351337 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 "by submitter,freq,cluster" 17q21.1 transcription factor-like 4 6260 rs665278 ALG8 79053 11 77502968 NM_024079 NP_076984 A/G N222S minus 838543 1303 SEQUENOM CEPH CEPH (92) 92 0.18 83 by freq 11pter-p15.5 "asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)" 6261 rs665470 KRT6IRS 112802 12 51232765 NM_033448 NP_258259 C/T E122K plus 838737 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq" 12q13.13 keratin 6 irs 6262 rs665470 KRT6IRS 112802 12 51232765 NM_033448 NP_258259 C/T E122K plus 838737 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq" 12q13.13 keratin 6 irs 6263 rs665470 KRT6IRS 112802 12 51232765 NM_033448 NP_258259 C/T E122K plus 24387117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq" 12q13.13 keratin 6 irs 6264 rs665470 KRT6IRS 112802 12 51232765 NM_033448 NP_258259 C/T E122K plus 24387117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq" 12q13.13 keratin 6 irs 6265 rs665470 KRT6IRS 112802 12 51232765 NM_033448 NP_258259 C/T E122K plus 24387117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq" 12q13.13 keratin 6 irs 6266 rs665522 KRT6IRS 112802 12 51232810 NM_033448 NP_258259 C/T V107I plus 24387129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 12q13.13 keratin 6 irs 6267 rs665522 KRT6IRS 112802 12 51232810 NM_033448 NP_258259 C/T V107I plus 24387129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 12q13.13 keratin 6 irs 6268 rs665522 KRT6IRS 112802 12 51232810 NM_033448 NP_258259 C/T V107I plus 24387129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 12q13.13 keratin 6 irs 6269 rs668556 MACF1 23499 1 39583456 NM_012090 NP_036222 C/G S4670T minus 841880 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6270 rs668556 MACF1 23499 1 39583456 NM_012090 NP_036222 C/G S4670T minus 24262023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6271 rs668556 MACF1 23499 1 39583456 NM_012090 NP_036222 C/G S4670T minus 24262023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6272 rs668556 MACF1 23499 1 39583456 NM_012090 NP_036222 C/G S4670T minus 24262023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6273 rs668556 MACF1 23499 1 39583456 NM_033044 NP_149033 C/G S5172T minus 841880 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6274 rs668556 MACF1 23499 1 39583456 NM_033044 NP_149033 C/G S5172T minus 24262023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6275 rs668556 MACF1 23499 1 39583456 NM_033044 NP_149033 C/G S5172T minus 24262023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6276 rs668556 MACF1 23499 1 39583456 NM_033044 NP_149033 C/G S5172T minus 24262023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p32-p31 microtubule-actin crosslinking factor 1 6277 rs669661 PRG3 10394 11 56904751 NM_006093 NP_006084 C/T C3R minus 843008 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 11q12 proteoglycan 3 6278 rs669661 PRG3 10394 11 56904751 NM_006093 NP_006084 C/T C3R minus 23612186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11q12 proteoglycan 3 6279 rs669661 PRG3 10394 11 56904751 NM_006093 NP_006084 C/T C3R minus 23612186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 11q12 proteoglycan 3 6280 rs669661 PRG3 10394 11 56904751 NM_006093 NP_006084 C/T C3R minus 23612186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q12 proteoglycan 3 6281 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 133836 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.22 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6282 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 133836 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.27 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6283 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 133836 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6284 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 843041 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6285 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 843041 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 1 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6286 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 843041 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.26 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6287 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 24634847 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6288 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 24634847 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6289 rs669694 T3JAM 80342 1 206339155 NM_025228 NP_079504 C/G Q353E plus 24634847 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by doubleHit,freq,cluster" 1q32.3-q41 TRAF3-interacting Jun N-terminal kinase (JNK)-activating modulator 6290 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 3067327 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6291 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 3067327 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6292 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 4921263 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.21 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6293 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 23380467 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6294 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 23380467 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.24 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6295 rs670573 MRPS24 64951 7 43679753 NM_032014 NP_114403 C/T W97R minus 23380467 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "HapMap,freq,cluster" 7p14 mitochondrial ribosomal protein S24 6296 rs670741 K6IRS4 121391 12 51251440 NM_175053 NP_778223 A/C E271D minus 844117 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 6 irs4 6297 rs670741 K6IRS4 121391 12 51251440 NM_175053 NP_778223 A/C E271D minus 24387289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 6 irs4 6298 rs670741 K6IRS4 121391 12 51251440 NM_175053 NP_778223 A/C E271D minus 24387289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 6 irs4 6299 rs670741 K6IRS4 121391 12 51251440 NM_175053 NP_778223 A/C E271D minus 24387289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 6 irs4 6300 rs671694 SDK1 221935 7 3987216 NM_152744 NP_689957 C/T H1641R minus 24424955 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 7p22.3-p22.2 sidekick homolog 1 (chicken) 6301 rs671694 SDK1 221935 7 3987216 NM_152744 NP_689957 C/T H1641R minus 24424955 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 7p22.3-p22.2 sidekick homolog 1 (chicken) 6302 rs671694 SDK1 221935 7 3987216 NM_152744 NP_689957 C/T H1641R minus 24424955 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 7p22.3-p22.2 sidekick homolog 1 (chicken) 6303 rs671871 LAMA1 284217 18 6967844 NM_005559 NP_005550 A/G I2076T plus 845270 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 6304 rs671871 LAMA1 284217 18 6967844 NM_005559 NP_005550 A/G I2076T plus 23585965 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 6305 rs671871 LAMA1 284217 18 6967844 NM_005559 NP_005550 A/G I2076T plus 23585965 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 6306 rs671871 LAMA1 284217 18 6967844 NM_005559 NP_005550 A/G I2076T plus 23585965 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 18p11.23 "laminin, alpha 1" 6307 rs673951 STK11IP 114790 2 220298860 NM_052902 NP_443134 C/T V563I minus 81075 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.23 120 "by doubleHit,freq" 2q36.1 serine/threonine kinase 11 interacting protein 6308 rs673951 STK11IP 114790 2 220298860 NM_052902 NP_443134 C/T V563I minus 81075 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.34 120 "by doubleHit,freq" 2q36.1 serine/threonine kinase 11 interacting protein 6309 rs675815 GLYAT 10249 11 58234660 NM_005838 NP_005829 C/T N156S plus 10704608 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6310 rs675815 GLYAT 10249 11 58234660 NM_005838 NP_005829 C/T N156S plus 20741214 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6311 rs675815 GLYAT 10249 11 58234660 NM_005838 NP_005829 C/T N156S plus 24097603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6312 rs675815 GLYAT 10249 11 58234660 NM_005838 NP_005829 C/T N156S plus 24097603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6313 rs675815 GLYAT 10249 11 58234660 NM_005838 NP_005829 C/T N156S plus 24097603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6314 rs675815 GLYAT 10249 11 58234660 NM_201648 NP_964011 C/T N156S plus 10704608 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6315 rs675815 GLYAT 10249 11 58234660 NM_201648 NP_964011 C/T N156S plus 20741214 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6316 rs675815 GLYAT 10249 11 58234660 NM_201648 NP_964011 C/T N156S plus 24097603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6317 rs675815 GLYAT 10249 11 58234660 NM_201648 NP_964011 C/T N156S plus 24097603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6318 rs675815 GLYAT 10249 11 58234660 NM_201648 NP_964011 C/T N156S plus 24097603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q12.2 glycine-N-acyltransferase 6319 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 2152529 1303 SEQUENOM CEPH CEPH (92) 92 0.2 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6320 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 8819681 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.31 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6321 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 8819681 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.19 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6322 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 8819681 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6323 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 8819681 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6324 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 8819681 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.35 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6325 rs676210 APOB 338 2 21143176 NM_000384 NP_000375 A/G P2739L plus 20418921 889 PHARMGKB_PARC PA128275074 92 0.18 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6326 rs676314 NAPSA 9476 19 55557347 NM_004851 NP_004842 C/T I40T minus 849807 1303 SEQUENOM CEPH CEPH (92) 92 0.25 120 "by doubleHit,submitter,freq,cluster" 19q13.33 napsin A aspartic peptidase 6327 rs676823 GPR109A 338442 12 121712119 NM_177551 NP_808219 C/T F198L minus 850328 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by cluster,freq" 12q24.31 G protein-coupled receptor 109A 6328 rs676823 GPR109A 338442 12 121712119 NM_177551 NP_808219 C/T F198L minus 4927542 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.44 123 "by cluster,freq" 12q24.31 G protein-coupled receptor 109A 6329 rs678560 MOCOS 55034 18 32039091 NM_017947 NP_060417 C/T V358M minus 23751479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6330 rs678560 MOCOS 55034 18 32039091 NM_017947 NP_060417 C/T V358M minus 23751479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6331 rs678560 MOCOS 55034 18 32039091 NM_017947 NP_060417 C/T V358M minus 23751479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6332 rs678560 MOCOS 55034 18 32039091 NM_017947 NP_060417 C/T V358M minus 24796557 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 "by cluster,freq" 18q12 molybdenum cofactor sulfurase 6333 rs678892 PIGB 9488 15 53420151 NM_004855 NP_004846 G/T W299L plus 12318852 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,submitter,freq,cluster" 15q21-q22 "phosphatidylinositol glycan, class B" 6334 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 2984773 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.32 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6335 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 4251046 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 40 0.4 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6336 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 4251046 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6337 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 4251046 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6338 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 4251046 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6339 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 24073656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6340 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 24073656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6341 rs679620 MMP3 4314 11 102218830 NM_002422 NP_002413 A/G K45E minus 24073656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 11q22.3 "matrix metalloproteinase 3 (stromelysin 1, progelatinase)" 6342 rs679899 APOB 338 2 21162566 NM_000384 NP_000375 A/G A618V plus 2756662 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6343 rs679899 APOB 338 2 21162566 NM_000384 NP_000375 A/G A618V plus 20418976 889 PHARMGKB_PARC PA128275074 94 0.26 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 6344 rs680055 CYP3A43 64816 7 99102256 NM_022820 NP_073731 C/G P340A minus 853614 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6345 rs680055 CYP3A43 64816 7 99102256 NM_022820 NP_073731 C/G P340A minus 23413129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6346 rs680055 CYP3A43 64816 7 99102256 NM_022820 NP_073731 C/G P340A minus 23413129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6347 rs680055 CYP3A43 64816 7 99102256 NM_022820 NP_073731 C/G P340A minus 23413129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6348 rs680055 CYP3A43 64816 7 99102256 NM_057095 NP_476436 C/G P340A minus 853614 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6349 rs680055 CYP3A43 64816 7 99102256 NM_057095 NP_476436 C/G P340A minus 23413129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6350 rs680055 CYP3A43 64816 7 99102256 NM_057095 NP_476436 C/G P340A minus 23413129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6351 rs680055 CYP3A43 64816 7 99102256 NM_057095 NP_476436 C/G P340A minus 23413129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6352 rs680055 CYP3A43 64816 7 99102256 NM_057096 NP_476437 C/G P340A minus 853614 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6353 rs680055 CYP3A43 64816 7 99102256 NM_057096 NP_476437 C/G P340A minus 23413129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6354 rs680055 CYP3A43 64816 7 99102256 NM_057096 NP_476437 C/G P340A minus 23413129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6355 rs680055 CYP3A43 64816 7 99102256 NM_057096 NP_476437 C/G P340A minus 23413129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 43" 6356 rs680277 RGS8 85397 1 179372521 NM_033345 NP_203131 C/T N3S plus 23184144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling 8 6357 rs680277 RGS8 85397 1 179372521 NM_033345 NP_203131 C/T N3S plus 23184144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling 8 6358 rs680277 RGS8 85397 1 179372521 NM_033345 NP_203131 C/T N3S plus 23184144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling 8 6359 rs681063 KRT6A 3853 12 51172908 NM_005554 NP_005545 A/G G111D minus 24811400 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 12q12-q13 keratin 6A 6360 rs681747 STK11IP 114790 2 220288145 NM_052902 NP_443134 G/T R1M plus 855337 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6361 rs681747 STK11IP 114790 2 220288145 NM_052902 NP_443134 G/T R1M plus 855337 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6362 rs681747 STK11IP 114790 2 220288145 NM_052902 NP_443134 G/T R1M plus 23248776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6363 rs681747 STK11IP 114790 2 220288145 NM_052902 NP_443134 G/T R1M plus 23248776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6364 rs681747 STK11IP 114790 2 220288145 NM_052902 NP_443134 G/T R1M plus 23248776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.1 serine/threonine kinase 11 interacting protein 6365 rs682327 ARCN1 372 11 117959844 NM_001655 NP_001646 A/C F186L minus 1640470 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 87 HapMap 11q23.3 archain 1 6366 rs682327 ARCN1 372 11 117959844 NM_001655 NP_001646 A/C F186L minus 1640470 1303 SEQUENOM CEPH CEPH (92) 92 1 87 HapMap 11q23.3 archain 1 6367 rs682632 TEK 7010 9 27173463 NM_000459 NP_000450 G/T Q346P minus 1651479 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "by cluster,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 6368 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 856988 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6369 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 856988 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6370 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 856988 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6371 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 959502 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6372 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 959502 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6373 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 959502 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6374 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 959502 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 96 0.22 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6375 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 2051150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6376 rs683369 SLC22A1 6580 6 160521615 NM_003057 NP_003048 C/G L160F plus 2051150 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6377 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 856988 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6378 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 856988 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6379 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 856988 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6380 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 959502 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6381 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 959502 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6382 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 959502 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6383 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 959502 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 96 0.22 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6384 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 2051150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6385 rs683369 SLC22A1 6580 6 160521615 NM_153187 NP_694857 C/G L160F plus 2051150 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 6386 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 858175 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.09 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6387 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 858175 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6388 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 858175 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6389 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 858175 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.25 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6390 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 858175 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6391 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 24597994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6392 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 24597994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6393 rs684535 CDON 50937 11 125336180 NM_016952 NP_058648 A/T I1221N plus 24597994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 6394 rs685523 ADAMTS13 11093 9 133340462 NM_139025 NP_620594 A/G A900V minus 859183 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6395 rs685523 ADAMTS13 11093 9 133340462 NM_139025 NP_620594 A/G A900V minus 859183 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6396 rs685523 ADAMTS13 11093 9 133340462 NM_139025 NP_620594 A/G A900V minus 859183 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6397 rs685523 ADAMTS13 11093 9 133340462 NM_139025 NP_620594 A/G A900V minus 859183 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6398 rs685523 ADAMTS13 11093 9 133340462 NM_139026 NP_620595 A/G A869V minus 859183 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6399 rs685523 ADAMTS13 11093 9 133340462 NM_139026 NP_620595 A/G A869V minus 859183 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6400 rs685523 ADAMTS13 11093 9 133340462 NM_139026 NP_620595 A/G A869V minus 859183 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6401 rs685523 ADAMTS13 11093 9 133340462 NM_139026 NP_620595 A/G A869V minus 859183 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6402 rs685523 ADAMTS13 11093 9 133340462 NM_139027 NP_620596 A/G A900V minus 859183 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6403 rs685523 ADAMTS13 11093 9 133340462 NM_139027 NP_620596 A/G A900V minus 859183 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6404 rs685523 ADAMTS13 11093 9 133340462 NM_139027 NP_620596 A/G A900V minus 859183 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6405 rs685523 ADAMTS13 11093 9 133340462 NM_139027 NP_620596 A/G A900V minus 859183 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.1 87 by freq 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 6406 rs685967 CLDN8 9073 21 30509730 NM_199328 NP_955360 A/G T129A minus 23526573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.11 claudin 8 6407 rs685967 CLDN8 9073 21 30509730 NM_199328 NP_955360 A/G T129A minus 23526573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 21q22.11 claudin 8 6408 rs685967 CLDN8 9073 21 30509730 NM_199328 NP_955360 A/G T129A minus 23526573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 21q22.11 claudin 8 6409 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 860039 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6410 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 860039 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6411 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 860039 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6412 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 860039 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6413 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 2775501 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6414 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 4011229 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6415 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 4932871 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6416 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 24055878 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6417 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 24055878 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6418 rs686364 CLDN8 9073 21 30509664 NM_199328 NP_955360 C/T S151P minus 24055878 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 claudin 8 6419 rs687425 MACF1 23499 1 39522794 NM_012090 NP_036222 G/T E3001X plus 861114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 83 HapMap 1p32-p31 microtubule-actin crosslinking factor 1 6420 rs687425 MACF1 23499 1 39522794 NM_033044 NP_149033 G/T E3503X plus 861114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 83 HapMap 1p32-p31 microtubule-actin crosslinking factor 1 6421 rs687885 KIR2DS1 3806 19 261543 NM_014512 NP_055327 G/T L111V plus 3251055 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.19 110 "by cluster,freq" 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1" 6422 rs688906 DNCH2 79659 11 102534726 XM_370652 XP_370652 C/T K1413R minus 23559641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 6423 rs688906 DNCH2 79659 11 102534726 XM_370652 XP_370652 C/T K1413R minus 23559641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 6424 rs688906 DNCH2 79659 11 102534726 XM_370652 XP_370652 C/T K1413R minus 23559641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 6425 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 863398 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6426 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 863398 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6427 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 863398 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6428 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 863398 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6429 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 10801045 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6430 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 10801045 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6431 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 24038555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6432 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 24038555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6433 rs689647 TP53BP1 7158 15 41549488 NM_005657 NP_005648 C/T G412S plus 24038555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 6434 rs690252 ZNF516 9658 18 72243851 XM_496278 XP_496278 A/C C1784G plus 864012 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 121 "by cluster,freq" 18q23 zinc finger protein 516 6435 rs690252 ZNF516 9658 18 72243851 XM_496278 XP_496278 A/C C1784G plus 864012 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 121 "by cluster,freq" 18q23 zinc finger protein 516 6436 rs690252 ZNF516 9658 18 72243851 XM_496278 XP_496278 A/C C1784G plus 864012 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 5 0.5 121 "by cluster,freq" 18q23 zinc finger protein 516 6437 rs690252 ZNF516 9658 18 72243851 XM_496278 XP_496278 A/C C1784G plus 864012 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 18q23 zinc finger protein 516 6438 rs690397 ZNF516 9658 18 72246755 XM_496278 XP_496278 C/T G1665R plus 864157 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 18q23 zinc finger protein 516 6439 rs693598 MLL 4297 11 117874425 NM_005933 NP_005924 A/C Q1975P plus 867407 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 6440 rs693598 MLL 4297 11 117874425 NM_005933 NP_005924 A/C Q1975P plus 867407 1303 SEQUENOM CEPH CEPH (92) 92 1 83 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 6441 rs695633 MYO18B 84700 22 24596824 NM_032608 NP_115997 A/G I1399V plus 869466 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 6442 rs695633 MYO18B 84700 22 24596824 NM_032608 NP_115997 A/G I1399V plus 23623644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 6443 rs695633 MYO18B 84700 22 24596824 NM_032608 NP_115997 A/G I1399V plus 23623644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 6444 rs695633 MYO18B 84700 22 24596824 NM_032608 NP_115997 A/G I1399V plus 23623644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 6445 rs696217 GHRL 51738 3 10306457 NM_016362 NP_057446 G/T L72M plus 899435 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 120 "HapMap,doubleHit,freq,cluster" 3p26-p25 ghrelin precursor 6446 rs696217 GHRL 51738 3 10306457 NM_016362 NP_057446 G/T L72M plus 899435 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 120 "HapMap,doubleHit,freq,cluster" 3p26-p25 ghrelin precursor 6447 rs696217 GHRL 51738 3 10306457 NM_016362 NP_057446 G/T L72M plus 899435 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 120 "HapMap,doubleHit,freq,cluster" 3p26-p25 ghrelin precursor 6448 rs696217 GHRL 51738 3 10306457 NM_016362 NP_057446 G/T L72M plus 1598058 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 120 "HapMap,doubleHit,freq,cluster" 3p26-p25 ghrelin precursor 6449 rs696217 GHRL 51738 3 10306457 NM_016362 NP_057446 G/T L72M plus 2990400 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 120 "HapMap,doubleHit,freq,cluster" 3p26-p25 ghrelin precursor 6450 rs696723 USH2A 7399 1 212812670 NM_007123 NP_009054 C/G G713R plus 1607229 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6451 rs696723 USH2A 7399 1 212812670 NM_007123 NP_009054 C/G G713R plus 1607229 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6452 rs696723 USH2A 7399 1 212812670 NM_007123 NP_009054 C/G G713R plus 23203129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6453 rs696723 USH2A 7399 1 212812670 NM_007123 NP_009054 C/G G713R plus 23203129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6454 rs696723 USH2A 7399 1 212812670 NM_007123 NP_009054 C/G G713R plus 23203129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6455 rs696723 USH2A 7399 1 212812670 NM_206933 NP_996816 C/G G713R plus 1607229 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6456 rs696723 USH2A 7399 1 212812670 NM_206933 NP_996816 C/G G713R plus 1607229 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6457 rs696723 USH2A 7399 1 212812670 NM_206933 NP_996816 C/G G713R plus 23203129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6458 rs696723 USH2A 7399 1 212812670 NM_206933 NP_996816 C/G G713R plus 23203129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6459 rs696723 USH2A 7399 1 212812670 NM_206933 NP_996816 C/G G713R plus 23203129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 6460 rs698620 SCAND2 54581 15 82978212 NM_022050 NP_071333 C/T A185T minus 2898922 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6461 rs698620 SCAND2 54581 15 82978212 NM_022050 NP_071333 C/T A185T minus 3206223 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.13 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6462 rs698620 SCAND2 54581 15 82978212 NM_022050 NP_071333 C/T A185T minus 24808695 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6463 rs698620 SCAND2 54581 15 82978212 NM_033633 NP_378659 C/T A185T minus 2898922 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6464 rs698620 SCAND2 54581 15 82978212 NM_033633 NP_378659 C/T A185T minus 3206223 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.13 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6465 rs698620 SCAND2 54581 15 82978212 NM_033633 NP_378659 C/T A185T minus 24808695 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6466 rs698620 SCAND2 54581 15 82978212 NM_033634 NP_378660 C/T A185T minus 2898922 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6467 rs698620 SCAND2 54581 15 82978212 NM_033634 NP_378660 C/T A185T minus 3206223 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.13 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6468 rs698620 SCAND2 54581 15 82978212 NM_033634 NP_378660 C/T A185T minus 24808695 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6469 rs698620 SCAND2 54581 15 82978212 NM_033635 NP_378661 C/T A185T minus 2898922 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6470 rs698620 SCAND2 54581 15 82978212 NM_033635 NP_378661 C/T A185T minus 3206223 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.13 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6471 rs698620 SCAND2 54581 15 82978212 NM_033635 NP_378661 C/T A185T minus 24808695 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6472 rs698620 SCAND2 54581 15 82978212 NM_033636 NP_378662 C/T A185T minus 2898922 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6473 rs698620 SCAND2 54581 15 82978212 NM_033636 NP_378662 C/T A185T minus 3206223 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.13 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6474 rs698620 SCAND2 54581 15 82978212 NM_033636 NP_378662 C/T A185T minus 24808695 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 15q25-q26 SCAN domain containing 2 6475 rs698761 SLC3A1 6519 2 44459225 NM_000341 NP_000332 A/G M618I plus 3230963 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.43 123 "by doubleHit,freq,cluster" 2p16.3 "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1" 6476 rs698761 SLC3A1 6519 2 44459225 NM_000341 NP_000332 A/G M618I plus 16302601 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,freq,cluster" 2p16.3 "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1" 6477 rs698761 SLC3A1 6519 2 44459225 NM_000341 NP_000332 A/G M618I plus 24168343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 2p16.3 "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1" 6478 rs698761 SLC3A1 6519 2 44459225 NM_000341 NP_000332 A/G M618I plus 24168343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 2p16.3 "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1" 6479 rs698761 SLC3A1 6519 2 44459225 NM_000341 NP_000332 A/G M618I plus 24168343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 2p16.3 "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1" 6480 rs699512 BLVRA 644 7 43584004 NM_000712 NP_000703 A/G A3T plus 2986167 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.3 120 "by doubleHit,cluster" 7p14-cen biliverdin reductase A 6481 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 81736 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.26 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6482 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 81736 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.29 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6483 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 81736 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.37 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6484 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 81736 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6485 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 81736 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6486 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 24169475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6487 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 24169475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6488 rs699664 GGCX 2677 2 85692194 NM_000821 NP_000812 A/G R325Q minus 24169475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq" 2p12 gamma-glutamyl carboxylase 6489 rs699738 CD2 914 1 117023189 NM_001767 NP_001758 G/T H266Q minus 3172797 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 22 0.32 123 "by doubleHit,freq,cluster" 1p13 "CD2 antigen (p50), sheep red blood cell receptor" 6490 rs699738 CD2 914 1 117023189 NM_001767 NP_001758 G/T H266Q minus 3190669 738 YUSUKE JBIC-ALLELE Japanese (752) 1252 0.29 123 "by doubleHit,freq,cluster" 1p13 "CD2 antigen (p50), sheep red blood cell receptor" 6491 rs699738 CD2 914 1 117023189 NM_001767 NP_001758 G/T H266Q minus 4385082 649 FHCRC POPU1 USA (20) 12 0.1 123 "by doubleHit,freq,cluster" 1p13 "CD2 antigen (p50), sheep red blood cell receptor" 6492 rs699738 CD2 914 1 117023189 NM_001767 NP_001758 G/T H266Q minus 4385082 649 FHCRC POPU1 USA (20) 36 0.2 123 "by doubleHit,freq,cluster" 1p13 "CD2 antigen (p50), sheep red blood cell receptor" 6493 rs699738 CD2 914 1 117023189 NM_001767 NP_001758 G/T H266Q minus 17337954 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,freq,cluster" 1p13 "CD2 antigen (p50), sheep red blood cell receptor" 6494 rs700233 C9 735 5 39400311 NM_001737 NP_001728 A/G R5W plus 3228120 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.13 121 "by doubleHit,freq,cluster" 5p14-p12 complement component 9 6495 rs700241 DAB2 1601 5 39412889 NM_001343 NP_001334 A/G T586I plus 2681857 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.02 108 "HapMap,freq,cluster" 5p13 "disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)" 6496 rs700241 DAB2 1601 5 39412889 NM_001343 NP_001334 A/G T586I plus 2681857 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "HapMap,freq,cluster" 5p13 "disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)" 6497 rs700241 DAB2 1601 5 39412889 NM_001343 NP_001334 A/G T586I plus 4919796 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 108 "HapMap,freq,cluster" 5p13 "disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)" 6498 rs700785 IFNK 56832 9 27514731 NM_020124 NP_064509 C/T K133E minus 2323732 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 9p21.2 "interferon, kappa" 6499 rs701753 CP 1356 3 150398933 NM_000096 NP_000087 A/T E544D plus 887587 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 123 "HapMap,freq,cluster" 3q23-q25 ceruloplasmin (ferroxidase) 6500 rs701753 CP 1356 3 150398933 NM_000096 NP_000087 A/T E544D plus 887587 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.21 123 "HapMap,freq,cluster" 3q23-q25 ceruloplasmin (ferroxidase) 6501 rs701753 CP 1356 3 150398933 NM_000096 NP_000087 A/T E544D plus 887587 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.2 123 "HapMap,freq,cluster" 3q23-q25 ceruloplasmin (ferroxidase) 6502 rs701753 CP 1356 3 150398933 NM_000096 NP_000087 A/T E544D plus 1914677 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 3q23-q25 ceruloplasmin (ferroxidase) 6503 rs701753 CP 1356 3 150398933 NM_000096 NP_000087 A/T E544D plus 1914677 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,freq,cluster" 3q23-q25 ceruloplasmin (ferroxidase) 6504 rs701865 PDE6C 5146 10 95371763 NM_006204 NP_006195 A/T S270T plus 1477173 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24 "phosphodiesterase 6C, cGMP-specific, cone, alpha prime" 6505 rs701865 PDE6C 5146 10 95371763 NM_006204 NP_006195 A/T S270T plus 1477173 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24 "phosphodiesterase 6C, cGMP-specific, cone, alpha prime" 6506 rs701865 PDE6C 5146 10 95371763 NM_006204 NP_006195 A/T S270T plus 23580834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24 "phosphodiesterase 6C, cGMP-specific, cone, alpha prime" 6507 rs701865 PDE6C 5146 10 95371763 NM_006204 NP_006195 A/T S270T plus 23580834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24 "phosphodiesterase 6C, cGMP-specific, cone, alpha prime" 6508 rs701865 PDE6C 5146 10 95371763 NM_006204 NP_006195 A/T S270T plus 23580834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 10q24 "phosphodiesterase 6C, cGMP-specific, cone, alpha prime" 6509 rs702017 POLQ 10721 3 122746410 NM_006596 NP_006587 G/T R199I minus 23223575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6510 rs702017 POLQ 10721 3 122746410 NM_006596 NP_006587 G/T R199I minus 23223575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6511 rs702017 POLQ 10721 3 122746410 NM_006596 NP_006587 G/T R199I minus 23223575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6512 rs702017 POLQ 10721 3 122746410 NM_199420 NP_955452 G/T R66I minus 23223575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6513 rs702017 POLQ 10721 3 122746410 NM_199420 NP_955452 G/T R66I minus 23223575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6514 rs702017 POLQ 10721 3 122746410 NM_199420 NP_955452 G/T R66I minus 23223575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 6515 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 1146310 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.39 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6516 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 1146310 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.19 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6517 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 1146310 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.28 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6518 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 3176945 619 WICVAR MITOGPOP6 CORIELL Mixed 25 0.5 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6519 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 3576043 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.39 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6520 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 3576043 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.19 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6521 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 3576043 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.28 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6522 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 3576043 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6523 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 23358119 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6524 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 23358119 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6525 rs702689 MAP3K1 4214 5 56213200 XM_042066 XP_042066 A/G D940N plus 23358119 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 6526 rs703903 OR3A1 4994 17 3142253 NM_002550 NP_002541 C/T R125Q plus 1630984 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 121 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 1" 6527 rs703903 OR3A1 4994 17 3142253 NM_002550 NP_002541 C/T R125Q plus 1630984 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "olfactory receptor, family 3, subfamily A, member 1" 6528 rs704326 CACNA1E 777 1 178491314 NM_000721 NP_000712 C/T A1936T minus 2004404 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,submitter,freq,cluster" 1q25-q31 "calcium channel, voltage-dependent, alpha 1E subunit" 6529 rs704326 CACNA1E 777 1 178491314 NM_000721 NP_000712 C/T A1936T minus 3237240 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.46 120 "by doubleHit,submitter,freq,cluster" 1q25-q31 "calcium channel, voltage-dependent, alpha 1E subunit" 6530 rs704793 SLB 26160 2 27593316 NM_015662 NP_056477 C/T R953H plus 1483758 1303 SEQUENOM CEPH CEPH (92) 92 0.03 108 by freq 2p23.3 "selective LIM binding factor, rat homolog" 6531 rs704959 STI2 199223 3 39155267 NM_145755 NP_665698 C/T R1316K minus 1987574 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "by doubleHit,freq,cluster" 3p21.33 TPR domain containing STI2 6532 rs704959 STI2 199223 3 39155267 NM_145755 NP_665698 C/T R1316K minus 3236306 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.31 120 "by doubleHit,freq,cluster" 3p21.33 TPR domain containing STI2 6533 rs706107 SPINK4 27290 9 33230225 NM_014471 NP_055286 C/T V7I minus 5005243 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.31 123 "by doubleHit,submitter,freq,cluster" 9p13.3 "serine protease inhibitor, Kazal type 4" 6534 rs706107 SPINK4 27290 9 33230225 NM_014471 NP_055286 C/T V7I minus 18010644 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq,cluster" 9p13.3 "serine protease inhibitor, Kazal type 4" 6535 rs706107 SPINK4 27290 9 33230225 NM_014471 NP_055286 C/T V7I minus 23549017 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 9p13.3 "serine protease inhibitor, Kazal type 4" 6536 rs706107 SPINK4 27290 9 33230225 NM_014471 NP_055286 C/T V7I minus 23549017 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 9p13.3 "serine protease inhibitor, Kazal type 4" 6537 rs706107 SPINK4 27290 9 33230225 NM_014471 NP_055286 C/T V7I minus 23549017 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 9p13.3 "serine protease inhibitor, Kazal type 4" 6538 rs706761 CPAMD8 27151 19 16886292 NM_015692 NP_056507 A/G T1268I plus 1376023 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 121 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 6539 rs706761 CPAMD8 27151 19 16886292 NM_015692 NP_056507 A/G T1268I plus 3232778 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.31 121 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 6540 rs707555 PCK1 5105 20 55571301 NM_002591 NP_002582 C/G V184L minus 1507075 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,submitter,freq,cluster" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 6541 rs707555 PCK1 5105 20 55571301 NM_002591 NP_002582 C/G V184L minus 24006946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 6542 rs707555 PCK1 5105 20 55571301 NM_002591 NP_002582 C/G V184L minus 24006946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 6543 rs707555 PCK1 5105 20 55571301 NM_002591 NP_002582 C/G V184L minus 24006946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 6544 rs707950 HLA-DQA1 3117 6 32717851 NM_002122 NP_002113 C/G Q152H plus 24816100 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 6545 rs708567 IL17RC 84818 3 9935070 NM_032732 NP_116121 A/G S111L minus 1585573 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6546 rs708567 IL17RC 84818 3 9935070 NM_032732 NP_116121 A/G S111L minus 1585573 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6547 rs708567 IL17RC 84818 3 9935070 NM_032732 NP_116121 A/G S111L minus 24305236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6548 rs708567 IL17RC 84818 3 9935070 NM_032732 NP_116121 A/G S111L minus 24305236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6549 rs708567 IL17RC 84818 3 9935070 NM_032732 NP_116121 A/G S111L minus 24305236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6550 rs708567 IL17RC 84818 3 9935070 NM_153460 NP_703190 A/G S111L minus 1585573 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6551 rs708567 IL17RC 84818 3 9935070 NM_153460 NP_703190 A/G S111L minus 1585573 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6552 rs708567 IL17RC 84818 3 9935070 NM_153460 NP_703190 A/G S111L minus 24305236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6553 rs708567 IL17RC 84818 3 9935070 NM_153460 NP_703190 A/G S111L minus 24305236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6554 rs708567 IL17RC 84818 3 9935070 NM_153460 NP_703190 A/G S111L minus 24305236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6555 rs708567 IL17RC 84818 3 9935070 NM_153461 NP_703191 A/G S182L minus 1585573 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6556 rs708567 IL17RC 84818 3 9935070 NM_153461 NP_703191 A/G S182L minus 1585573 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6557 rs708567 IL17RC 84818 3 9935070 NM_153461 NP_703191 A/G S182L minus 24305236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6558 rs708567 IL17RC 84818 3 9935070 NM_153461 NP_703191 A/G S182L minus 24305236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6559 rs708567 IL17RC 84818 3 9935070 NM_153461 NP_703191 A/G S182L minus 24305236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6560 rs708567 IL17RC 84818 3 9935070 NM_153462 NP_703192 A/G S111L minus 1585573 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6561 rs708567 IL17RC 84818 3 9935070 NM_153462 NP_703192 A/G S111L minus 1585573 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6562 rs708567 IL17RC 84818 3 9935070 NM_153462 NP_703192 A/G S111L minus 24305236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6563 rs708567 IL17RC 84818 3 9935070 NM_153462 NP_703192 A/G S111L minus 24305236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6564 rs708567 IL17RC 84818 3 9935070 NM_153462 NP_703192 A/G S111L minus 24305236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 3p25.3 interleukin 17 receptor C 6565 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 4932661 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6566 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 8345514 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6567 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 8345514 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6568 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 24497001 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6569 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 24497001 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6570 rs709012 SN 6614 20 3623498 NM_023068 NP_075556 G/T H919P plus 24497001 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 sialoadhesin 6571 rs709210 HYAL2 8692 3 50332873 NM_003773 NP_003764 G/T S18A minus 128536 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.05 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6572 rs709210 HYAL2 8692 3 50332873 NM_003773 NP_003764 G/T S18A minus 128536 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6573 rs709210 HYAL2 8692 3 50332873 NM_003773 NP_003764 G/T S18A minus 128536 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.16 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6574 rs709210 HYAL2 8692 3 50332873 NM_003773 NP_003764 G/T S18A minus 128536 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.3 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6575 rs709210 HYAL2 8692 3 50332873 NM_003773 NP_003764 G/T S18A minus 128536 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6576 rs709210 HYAL2 8692 3 50332873 NM_033158 NP_149348 G/T S18A minus 128536 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.05 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6577 rs709210 HYAL2 8692 3 50332873 NM_033158 NP_149348 G/T S18A minus 128536 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6578 rs709210 HYAL2 8692 3 50332873 NM_033158 NP_149348 G/T S18A minus 128536 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.16 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6579 rs709210 HYAL2 8692 3 50332873 NM_033158 NP_149348 G/T S18A minus 128536 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.3 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6580 rs709210 HYAL2 8692 3 50332873 NM_033158 NP_149348 G/T S18A minus 128536 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "HapMap,freq,cluster" 3p21.3 hyaluronoglucosaminidase 2 6581 rs709564 NYD-SP17 84692 3 108579237 NM_032600 NP_115989 A/G R38Q plus 23253804 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 3q13.12 testes development-related NYD-SP17 6582 rs709564 NYD-SP17 84692 3 108579237 NM_032600 NP_115989 A/G R38Q plus 23253804 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 3q13.12 testes development-related NYD-SP17 6583 rs709564 NYD-SP17 84692 3 108579237 NM_032600 NP_115989 A/G R38Q plus 23253804 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 3q13.12 testes development-related NYD-SP17 6584 rs709783 NYD-SP29 126820 1 85306487 NM_145172 NP_660155 A/G R798H plus 16333774 901 AFFY AfAm 12 0.33 123 "by submitter,freq,cluster" 1p22.3 testis development protein NYD-SP29 6585 rs709783 NYD-SP29 126820 1 85306487 NM_145172 NP_660155 A/G R798H plus 16333774 902 AFFY Caucasian 22 0.09 123 "by submitter,freq,cluster" 1p22.3 testis development protein NYD-SP29 6586 rs709783 NYD-SP29 126820 1 85306487 NM_145172 NP_660155 A/G R798H plus 16333774 903 AFFY Asian 10 0.2 123 "by submitter,freq,cluster" 1p22.3 testis development protein NYD-SP29 6587 rs709783 NYD-SP29 126820 1 85306487 NM_145172 NP_660155 A/G R798H plus 16333774 904 AFFY CEPH 5 0.5 123 "by submitter,freq,cluster" 1p22.3 testis development protein NYD-SP29 6588 rs709783 NYD-SP29 126820 1 85306487 NM_145172 NP_660155 A/G R798H plus 16333774 905 AFFY PDpanel 44 0.16 123 "by submitter,freq,cluster" 1p22.3 testis development protein NYD-SP29 6589 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.01 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6590 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6591 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 640 TSC-CSHL TSC_42_A TSC Asian (42) 85 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6592 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6593 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6594 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 22 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6595 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6596 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6597 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 1487247 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6598 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 3177172 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6599 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 24129851 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6600 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 24129851 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6601 rs709932 SERPINA1 5265 14 93918954 NM_000295 NP_000286 A/G R125H minus 24129851 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" 6602 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 1466234 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.38 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6603 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 1466234 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.37 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6604 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 1466234 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.34 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6605 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 1466234 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6606 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 1466234 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6607 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 24593303 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6608 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 24593303 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6609 rs710174 FBXO7 25793 22 31199744 NM_012179 NP_036311 A/G M115I plus 24593303 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 22q12-q13 F-box protein 7 6610 rs710187 GCAT 23464 22 36528589 NM_014291 NP_055106 C/T R39C plus 137242 771 TSC-CSHL SC_12_A CORIELL Asian (12) 14 0.21 123 "HapMap,doubleHit,freq,cluster" 22q13.1 glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 6611 rs710187 GCAT 23464 22 36528589 NM_014291 NP_055106 C/T R39C plus 137242 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.3 123 "HapMap,doubleHit,freq,cluster" 22q13.1 glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 6612 rs710187 GCAT 23464 22 36528589 NM_014291 NP_055106 C/T R39C plus 137242 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.42 123 "HapMap,doubleHit,freq,cluster" 22q13.1 glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 6613 rs710187 GCAT 23464 22 36528589 NM_014291 NP_055106 C/T R39C plus 7997788 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,freq,cluster" 22q13.1 glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 6614 rs710187 GCAT 23464 22 36528589 NM_014291 NP_055106 C/T R39C plus 7997788 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 22q13.1 glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 6615 rs710193 ST13 6767 22 39547690 NM_003932 NP_003923 C/T M297I plus 2671357 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.05 92 "by doubleHit,freq" 22q13.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 6616 rs710193 ST13 6767 22 39547690 NM_003932 NP_003923 C/T M297I plus 2671357 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.15 92 "by doubleHit,freq" 22q13.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 6617 rs710193 ST13 6767 22 39547690 NM_003932 NP_003923 C/T M297I plus 2671357 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 92 "by doubleHit,freq" 22q13.2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 6618 rs710415 B7 10233 12 6893384 NM_006992 NP_008923 A/G E276G plus 12210088 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 6619 rs710415 B7 10233 12 6893384 NM_006992 NP_008923 A/G E276G plus 12210088 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 6620 rs710415 B7 10233 12 6893384 NM_006992 NP_008923 A/G E276G plus 24697691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 6621 rs710415 B7 10233 12 6893384 NM_006992 NP_008923 A/G E276G plus 24697691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 6622 rs710415 B7 10233 12 6893384 NM_006992 NP_008923 A/G E276G plus 24697691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 6623 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 1570754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6624 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 1570754 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6625 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 5002896 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6626 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 24704553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6627 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 24704553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6628 rs711177 ZZEF1 23140 17 3872859 NM_015113 NP_055928 C/G E2369Q plus 24704553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 6629 rs712270 MYO15A 51168 17 17997892 NM_016239 NP_057323 A/T Y2682F minus 1960946 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq" 17p11.2 myosin XVA 6630 rs712270 MYO15A 51168 17 17997892 NM_016239 NP_057323 A/T Y2682F minus 2670490 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.27 121 "by doubleHit,freq" 17p11.2 myosin XVA 6631 rs712270 MYO15A 51168 17 17997892 NM_016239 NP_057323 A/T Y2682F minus 2670490 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.45 121 "by doubleHit,freq" 17p11.2 myosin XVA 6632 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 1998868 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6633 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 1998868 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6634 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 4919961 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6635 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 23418318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6636 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 23418318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6637 rs712665 U2AF1L1 7310 5 112255698 NM_005083 NP_005074 C/T S155G minus 23418318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 6638 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6639 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 901 AFFY AfAm 40 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6640 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 902 AFFY Caucasian 40 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6641 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 903 AFFY Asian 40 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6642 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 904 AFFY CEPH 56 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6643 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 905 AFFY PDpanel 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6644 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23525 906 AFFY APE 4 1 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6645 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23798672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6646 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23798672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6647 rs714181 BTBD12 84464 16 3580275 NM_032444 NP_115820 C/T P439L minus 23798672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 BTB (POZ) domain containing 12 6648 rs714368 SLC22A16 85413 6 110884821 NM_033125 NP_149116 A/G H49R minus 10328090 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,submitter,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6649 rs714368 SLC22A16 85413 6 110884821 NM_033125 NP_149116 A/G H49R minus 23456009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6650 rs714368 SLC22A16 85413 6 110884821 NM_033125 NP_149116 A/G H49R minus 23456009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,submitter,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6651 rs714368 SLC22A16 85413 6 110884821 NM_033125 NP_149116 A/G H49R minus 23456009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6652 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24586 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6653 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24586 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6654 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24586 640 TSC-CSHL TSC_42_A TSC Asian (42) 81 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6655 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24586 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6656 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 3196641 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6657 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24207510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6658 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24207510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6659 rs714774 CNAP1 9918 12 6489545 NM_014865 NP_055680 C/G Q83E minus 24207510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 6660 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 27227 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6661 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 27227 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.04 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6662 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 27227 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.33 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6663 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 27227 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6664 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 24137326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6665 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 24137326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6666 rs715146 DCP1B 196513 12 1932336 NM_152640 NP_689853 C/T R344H plus 24137326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 12p13.33 decapping enzyme hDcp1b 6667 rs715748 BDP1 55814 5 70842213 NM_018429 NP_060899 A/G G1180S plus 54387 3 KWOK C USA Caucasian (30) 84 1 111 "by doubleHit,submitter" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 6668 rs715748 BDP1 55814 5 70842213 NM_018429 NP_060899 A/G G1180S plus 54387 5 KWOK B USA African-American (30) 84 1 111 "by doubleHit,submitter" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 6669 rs715748 BDP1 55814 5 70842213 NM_018429 NP_060899 A/G G1180S plus 54387 7 KWOK A Chinese (30) 84 1 111 "by doubleHit,submitter" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 6670 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6671 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6672 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6673 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6674 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6675 rs719705 RAB27A 5873 15 53308189 NM_004580 NP_004571 G/T T85P plus 60367 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6676 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6677 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6678 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6679 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6680 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6681 rs719705 RAB27A 5873 15 53308189 NM_183234 NP_899057 G/T T85P plus 60367 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6682 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6683 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6684 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6685 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6686 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6687 rs719705 RAB27A 5873 15 53308189 NM_183235 NP_899058 G/T T85P plus 60367 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6688 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6689 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6690 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6691 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6692 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6693 rs719705 RAB27A 5873 15 53308189 NM_183236 NP_899059 G/T T85P plus 60367 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 15q15-q21.1 "RAB27A, member RAS oncogene family" 6694 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 63537 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6695 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 63537 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6696 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 63537 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6697 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 63537 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6698 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 63537 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6699 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 4936901 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6700 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 8819859 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6701 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 8819859 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6702 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 8819859 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6703 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 8819859 777 SNP500CANCER HISP1 Hispanic (23) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6704 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 8819859 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6705 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 23388886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6706 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 23388886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6707 rs721917 SFTPD 6441 10 81696304 NM_003019 NP_003010 C/T M31T minus 23388886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 6708 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6709 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 901 AFFY AfAm 36 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6710 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 902 AFFY Caucasian 38 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6711 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 903 AFFY Asian 38 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6712 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 904 AFFY CEPH 40 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6713 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 905 AFFY PDpanel 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6714 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 906 AFFY APE 4 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6715 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 64898 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6716 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 23875510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6717 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 23875510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6718 rs722896 CLECSF13 165530 2 70955116 NM_173535 NP_775806 A/G R351H minus 23875510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 6719 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.48 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6720 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.11 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6721 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6722 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.47 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6723 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6724 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 901 AFFY AfAm 28 0.07 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6725 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 902 AFFY Caucasian 24 0.38 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6726 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 903 AFFY Asian 17 0.5 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6727 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 904 AFFY CEPH 40 0.43 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6728 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 905 AFFY PDpanel 46 0.39 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6729 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 65174 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6730 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 24565864 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6731 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 24565864 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6732 rs723077 TTC12 54970 11 112699378 NM_017868 NP_060338 A/C M73L plus 24565864 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq" 11q23.2 tetratricopeptide repeat domain 12 6733 rs723685 SLC22A16 85413 6 110870568 NM_033125 NP_149116 C/T V252A minus 66006 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 121 "HapMap,doubleHit,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6734 rs723685 SLC22A16 85413 6 110870568 NM_033125 NP_149116 C/T V252A minus 66006 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "HapMap,doubleHit,freq,cluster" 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 6735 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.4 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6736 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.18 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6737 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.15 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6738 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 94 0.14 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6739 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6740 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.36 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6741 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6742 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 180 0.09 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6743 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6744 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 67221 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6745 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 23531843 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6746 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 23531843 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6747 rs724558 SERPINB10 5273 18 59736240 NM_005024 NP_005015 C/T I99T plus 23531843 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 6748 rs724849 KRTAP22-1 337979 21 30895396 NM_181620 NP_853651 C/T Y29C minus 67630 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 1 111 "by doubleHit,submitter,freq" 21q22.1 keratin associated protein 22-1 6749 rs724849 KRTAP22-1 337979 21 30895396 NM_181620 NP_853651 C/T Y29C minus 67630 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.07 111 "by doubleHit,submitter,freq" 21q22.1 keratin associated protein 22-1 6750 rs724849 KRTAP22-1 337979 21 30895396 NM_181620 NP_853651 C/T Y29C minus 67630 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 1 111 "by doubleHit,submitter,freq" 21q22.1 keratin associated protein 22-1 6751 rs724849 KRTAP22-1 337979 21 30895396 NM_181620 NP_853651 C/T Y29C minus 67630 1303 SEQUENOM CEPH CEPH (92) 92 0.11 111 "by doubleHit,submitter,freq" 21q22.1 keratin associated protein 22-1 6752 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6753 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6754 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6755 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6756 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6757 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6758 rs725143 PELI2 57161 14 55824923 NM_021255 NP_067078 A/G E109K plus 68056 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 14q21 pellino homolog 2 (Drosophila) 6759 rs726684 PCDHGA8 9708 5 140752611 NM_014004 NP_054723 G/T L16R plus 70253 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6760 rs726684 PCDHGA8 9708 5 140752611 NM_014004 NP_054723 G/T L16R plus 24667156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6761 rs726684 PCDHGA8 9708 5 140752611 NM_014004 NP_054723 G/T L16R plus 24667156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6762 rs726684 PCDHGA8 9708 5 140752611 NM_014004 NP_054723 G/T L16R plus 24667156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6763 rs726684 PCDHGA8 9708 5 140752611 NM_032088 NP_114477 G/T L16R plus 70253 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6764 rs726684 PCDHGA8 9708 5 140752611 NM_032088 NP_114477 G/T L16R plus 24667156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6765 rs726684 PCDHGA8 9708 5 140752611 NM_032088 NP_114477 G/T L16R plus 24667156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6766 rs726684 PCDHGA8 9708 5 140752611 NM_032088 NP_114477 G/T L16R plus 24667156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 5q31 "protocadherin gamma subfamily A, 8" 6767 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 70942 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6768 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 70942 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6769 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 70942 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6770 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 10360811 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6771 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 24053244 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6772 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 24053244 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6773 rs727162 GPR154 387129 7 34647278 NM_207172 NP_997055 C/G S241R minus 24053244 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6774 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 70942 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6775 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 70942 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6776 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 70942 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6777 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 10360811 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6778 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 24053244 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6779 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 24053244 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6780 rs727162 GPR154 387129 7 34647278 NM_207173 NP_997056 C/G S241R minus 24053244 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.3 G protein-coupled receptor 154 6781 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 74175 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6782 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 74175 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.4 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6783 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 74175 1303 SEQUENOM CEPH CEPH (92) 91 0.09 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6784 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 3239017 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.4 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6785 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 23799214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6786 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 23799214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6787 rs729421 RABGGTA 5875 14 23806801 NM_004581 NP_004572 A/G T150A minus 23799214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6788 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 74175 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.31 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6789 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 74175 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.4 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6790 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 74175 1303 SEQUENOM CEPH CEPH (92) 91 0.09 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6791 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 3239017 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.4 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6792 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 23799214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6793 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 23799214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6794 rs729421 RABGGTA 5875 14 23806801 NM_182836 NP_878256 A/G T420A minus 23799214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 14q11.2 "Rab geranylgeranyltransferase, alpha subunit" 6795 rs729940 CHGA 1113 14 92468854 NM_001275 NP_001266 C/T R399W plus 3176885 619 WICVAR MITOGPOP6 CORIELL Mixed 22 0.27 123 "by cluster,freq" 14q32 chromogranin A (parathyroid secretory protein 1) 6796 rs729940 CHGA 1113 14 92468854 NM_001275 NP_001266 C/T R399W plus 13453089 1067 BAH EURO European 104 0.11 123 "by cluster,freq" 14q32 chromogranin A (parathyroid secretory protein 1) 6797 rs729940 CHGA 1113 14 92468854 NM_001275 NP_001266 C/T R399W plus 13453089 1068 BAH AFRI African-American 114 0.05 123 "by cluster,freq" 14q32 chromogranin A (parathyroid secretory protein 1) 6798 rs729940 CHGA 1113 14 92468854 NM_001275 NP_001266 C/T R399W plus 13453089 1069 BAH ASIA Asian 88 0.29 123 "by cluster,freq" 14q32 chromogranin A (parathyroid secretory protein 1) 6799 rs729940 CHGA 1113 14 92468854 NM_001275 NP_001266 C/T R399W plus 13453089 1070 BAH HISP Hispanic 56 0.23 123 "by cluster,freq" 14q32 chromogranin A (parathyroid secretory protein 1) 6800 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 75502 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 79 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6801 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 75502 771 TSC-CSHL SC_12_A CORIELL Asian (12) 11 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6802 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 75502 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6803 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 75502 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6804 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 75502 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6805 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 23957969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6806 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 23957969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6807 rs730469 EVC2 132884 4 5742742 NM_147127 NP_667338 C/T T619A plus 23957969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 6808 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 76395 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6809 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 76395 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6810 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 4931893 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.22 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6811 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 16359984 649 FHCRC POPU1 USA (20) 16 0.05 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6812 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 16359984 649 FHCRC POPU1 USA (20) 38 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6813 rs731170 LILRB4 11006 19 59868074 NM_006847 NP_006838 A/G D223G plus 16360036 649 FHCRC POPU1 USA (20) 40 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 6814 rs732186 MGAT5B 146664 17 72380431 NM_198955 NP_945193 A/G H2R plus 77724 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 1 86 HapMap 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 6815 rs732186 MGAT5B 146664 17 72380431 NM_198955 NP_945193 A/G H2R plus 77724 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 1 86 HapMap 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 6816 rs732186 MGAT5B 146664 17 72380431 NM_198955 NP_945193 A/G H2R plus 77724 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.03 86 HapMap 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 6817 rs732186 MGAT5B 146664 17 72380431 NM_198955 NP_945193 A/G H2R plus 77724 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 86 HapMap 17q25.3 "mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B" 6818 rs732609 TPO 7173 2 1478934 NM_000547 NP_000538 A/C T725P plus 78221 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6819 rs732609 TPO 7173 2 1478934 NM_000547 NP_000538 A/C T725P plus 24297928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6820 rs732609 TPO 7173 2 1478934 NM_000547 NP_000538 A/C T725P plus 24297928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6821 rs732609 TPO 7173 2 1478934 NM_000547 NP_000538 A/C T725P plus 24297928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6822 rs732609 TPO 7173 2 1478934 NM_175719 NP_783650 A/C T668P plus 78221 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6823 rs732609 TPO 7173 2 1478934 NM_175719 NP_783650 A/C T668P plus 24297928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6824 rs732609 TPO 7173 2 1478934 NM_175719 NP_783650 A/C T668P plus 24297928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6825 rs732609 TPO 7173 2 1478934 NM_175719 NP_783650 A/C T668P plus 24297928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6826 rs732609 TPO 7173 2 1478934 NM_175720 NP_783651 A/C T725P plus 78221 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6827 rs732609 TPO 7173 2 1478934 NM_175720 NP_783651 A/C T725P plus 24297928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6828 rs732609 TPO 7173 2 1478934 NM_175720 NP_783651 A/C T725P plus 24297928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6829 rs732609 TPO 7173 2 1478934 NM_175720 NP_783651 A/C T725P plus 24297928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6830 rs732609 TPO 7173 2 1478934 NM_175721 NP_783652 A/C T725P plus 78221 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6831 rs732609 TPO 7173 2 1478934 NM_175721 NP_783652 A/C T725P plus 24297928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6832 rs732609 TPO 7173 2 1478934 NM_175721 NP_783652 A/C T725P plus 24297928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6833 rs732609 TPO 7173 2 1478934 NM_175721 NP_783652 A/C T725P plus 24297928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6834 rs732609 TPO 7173 2 1478934 NM_175722 NP_783653 A/C T552P plus 78221 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6835 rs732609 TPO 7173 2 1478934 NM_175722 NP_783653 A/C T552P plus 24297928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6836 rs732609 TPO 7173 2 1478934 NM_175722 NP_783653 A/C T552P plus 24297928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6837 rs732609 TPO 7173 2 1478934 NM_175722 NP_783653 A/C T552P plus 24297928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 2p25 thyroid peroxidase 6838 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 78425 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6839 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 78425 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6840 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 78425 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6841 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 78425 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6842 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 78425 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6843 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 24448176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6844 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 24448176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6845 rs732774 ATP7B 540 13 51421809 NM_000053 NP_000044 A/G R952K minus 24448176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 6846 rs733731 PGLYRP2 114770 19 15448185 NM_052890 NP_443122 A/G R99Q minus 24195787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 19p13.12 peptidoglycan recognition protein 2 6847 rs733731 PGLYRP2 114770 19 15448185 NM_052890 NP_443122 A/G R99Q minus 24195787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,submitter,freq,cluster" 19p13.12 peptidoglycan recognition protein 2 6848 rs733731 PGLYRP2 114770 19 15448185 NM_052890 NP_443122 A/G R99Q minus 24195787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 34 0.44 123 "by doubleHit,submitter,freq,cluster" 19p13.12 peptidoglycan recognition protein 2 6849 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 79697 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.05 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6850 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 79697 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.12 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6851 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 79697 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.23 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6852 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 79697 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6853 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 23916317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6854 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 23916317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6855 rs733743 ZNF306 80317 6 28435350 NM_024493 NP_077819 C/G R3T minus 23916317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 6p21.33 zinc finger protein 306 6856 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.37 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6857 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6858 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.18 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6859 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.07 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6860 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6861 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.36 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6862 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 80413 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6863 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 3177889 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.47 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6864 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 4919188 738 YUSUKE JBIC-ALLELE Japanese (752) 1268 0.16 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6865 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 24395197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6866 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 24395197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6867 rs734312 WFS1 7466 4 6421426 NM_006005 NP_005996 A/G R611H plus 24395197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 4p16 Wolfram syndrome 1 (wolframin) 6868 rs734784 KCNS1 3787 20 43157041 NM_002251 NP_002242 A/G I489V minus 80995 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.4 121 "by doubleHit,submitter,freq,cluster" 20q12 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1" 6869 rs734784 KCNS1 3787 20 43157041 NM_002251 NP_002242 A/G I489V minus 80995 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.45 121 "by doubleHit,submitter,freq,cluster" 20q12 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1" 6870 rs734784 KCNS1 3787 20 43157041 NM_002251 NP_002242 A/G I489V minus 80995 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "by doubleHit,submitter,freq,cluster" 20q12 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1" 6871 rs734784 KCNS1 3787 20 43157041 NM_002251 NP_002242 A/G I489V minus 12587043 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,submitter,freq,cluster" 20q12 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1" 6872 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 81045 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.02 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6873 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 81045 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6874 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 81045 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6875 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 23518012 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6876 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 23518012 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6877 rs734824 PKD1L2 114780 16 79750873 NM_182740 NP_877417 G/T G1251W minus 23518012 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 16q23.2 polycystic kidney disease 1-like 2 6878 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6879 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6880 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6881 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6882 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6883 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6884 rs734852 GPR3 2827 1 27405109 NM_005281 NP_005272 A/G R222H plus 81079 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,freq,cluster" 1p36.1-p35 G protein-coupled receptor 3 6885 rs735273 TM6SF2 53345 19 19246411 XM_496297 XP_496297 C/T I33V plus 81626 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3-p12 transmembrane 6 superfamily member 2 6886 rs735273 TM6SF2 53345 19 19246411 XM_496297 XP_496297 C/T I33V plus 81626 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3-p12 transmembrane 6 superfamily member 2 6887 rs735273 TM6SF2 53345 19 19246411 XM_496297 XP_496297 C/T I33V plus 24552541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3-p12 transmembrane 6 superfamily member 2 6888 rs735273 TM6SF2 53345 19 19246411 XM_496297 XP_496297 C/T I33V plus 24552541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3-p12 transmembrane 6 superfamily member 2 6889 rs735273 TM6SF2 53345 19 19246411 XM_496297 XP_496297 C/T I33V plus 24552541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3-p12 transmembrane 6 superfamily member 2 6890 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 81884 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6891 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 81884 640 TSC-CSHL TSC_42_A TSC Asian (42) 80 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6892 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 81884 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6893 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 81884 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6894 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 4473484 693 EGP_SNPS PDR90 NIHPDR 172 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6895 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 23990478 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6896 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 23990478 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6897 rs735482 ASE-1 10849 19 50603842 NM_012099 NP_036231 A/C K259T plus 23990478 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 6898 rs735911 TMPRSS9 360200 19 2373177 NM_182973 NP_892018 A/G S793N plus 82431 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 86 "HapMap,submitter,freq" 19p13.3 transmembrane serine protease 9 6899 rs735911 TMPRSS9 360200 19 2373177 NM_182973 NP_892018 A/G S793N plus 82431 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 "HapMap,submitter,freq" 19p13.3 transmembrane serine protease 9 6900 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 82476 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6901 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 82476 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.25 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6902 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 82476 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6903 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 82476 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.45 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6904 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 5604802 693 EGP_SNPS PDR90 NIHPDR 172 0.31 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6905 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 24635512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6906 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 24635512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6907 rs735943 EXO1 9156 1 238356192 NM_003686 NP_003677 C/T H354R minus 24635512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6908 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 82476 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6909 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 82476 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.25 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6910 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 82476 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6911 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 82476 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.45 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6912 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 5604802 693 EGP_SNPS PDR90 NIHPDR 172 0.31 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6913 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 24635512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6914 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 24635512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6915 rs735943 EXO1 9156 1 238356192 NM_006027 NP_006018 C/T H354R minus 24635512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6916 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 82476 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6917 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 82476 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.25 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6918 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 82476 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6919 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 82476 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.45 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6920 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 5604802 693 EGP_SNPS PDR90 NIHPDR 172 0.31 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6921 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 24635512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6922 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 24635512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6923 rs735943 EXO1 9156 1 238356192 NM_130398 NP_569082 C/T H354R minus 24635512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 6924 rs737564 KBTBD9 114818 2 23562788 XM_496546 XP_496546 C/T A1194V plus 84539 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.02 120 "by doubleHit,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 6925 rs737565 KBTBD9 114818 2 23562856 XM_496546 XP_496546 A/C P1217T plus 84540 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.22 120 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 6926 rs737565 KBTBD9 114818 2 23562856 XM_496546 XP_496546 A/C P1217T plus 84540 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.4 120 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 6927 rs737565 KBTBD9 114818 2 23562856 XM_496546 XP_496546 A/C P1217T plus 84540 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.36 120 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 6928 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 86310 638 TSC-CSHL TSC_42_AA TSC African American (42) 64 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6929 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 86310 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 44 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6930 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 86310 640 TSC-CSHL TSC_42_A TSC Asian (42) 80 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6931 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 86310 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6932 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 2983681 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6933 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 23607217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6934 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 23607217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6935 rs738786 Rgr 266747 22 22358842 NM_153615 NP_705843 A/G Q24R plus 23607217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 6936 rs738792 MMP11 4320 22 22445932 NM_005940 NP_005931 C/T A38V plus 86318 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,doubleHit,freq,cluster" 22q11.23 matrix metalloproteinase 11 (stromelysin 3) 6937 rs738792 MMP11 4320 22 22445932 NM_005940 NP_005931 C/T A38V plus 3221455 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 123 "HapMap,doubleHit,freq,cluster" 22q11.23 matrix metalloproteinase 11 (stromelysin 3) 6938 rs738792 MMP11 4320 22 22445932 NM_005940 NP_005931 C/T A38V plus 23607471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "HapMap,doubleHit,freq,cluster" 22q11.23 matrix metalloproteinase 11 (stromelysin 3) 6939 rs738792 MMP11 4320 22 22445932 NM_005940 NP_005931 C/T A38V plus 23607471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 22q11.23 matrix metalloproteinase 11 (stromelysin 3) 6940 rs738792 MMP11 4320 22 22445932 NM_005940 NP_005931 C/T A38V plus 23607471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.34 123 "HapMap,doubleHit,freq,cluster" 22q11.23 matrix metalloproteinase 11 (stromelysin 3) 6941 rs739999 RGS11 8786 16 259512 NM_003834 NP_003825 A/G M406T plus 88057 1303 SEQUENOM CEPH CEPH (92) 92 0.02 119 "by doubleHit,freq,cluster" 16p13.3 regulator of G-protein signalling 11 6942 rs739999 RGS11 8786 16 259512 NM_183337 NP_899180 A/G M427T plus 88057 1303 SEQUENOM CEPH CEPH (92) 92 0.02 119 "by doubleHit,freq,cluster" 16p13.3 regulator of G-protein signalling 11 6943 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6944 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6945 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6946 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6947 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6948 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 89388 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6949 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 23240336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6950 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 23240336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6951 rs741006 MAP2 4133 2 210383668 NM_002374 NP_002365 C/T R423K minus 23240336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6952 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6953 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6954 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6955 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6956 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6957 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 89388 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6958 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 23240336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6959 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 23240336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6960 rs741006 MAP2 4133 2 210383668 NM_031846 NP_114034 C/T R423K minus 23240336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34-q35 microtubule-associated protein 2 6961 rs741064 HCA112 55365 7 149938377 NM_018487 NP_060957 C/T T122A minus 89456 1303 SEQUENOM CEPH CEPH (92) 92 0.38 121 "by doubleHit,freq,cluster" 7q36.1 hepatocellular carcinoma-associated antigen 112 6962 rs741143 FCGBP 8857 19 45054860 NM_003890 NP_003881 A/G A5017V plus 89552 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 120 "HapMap,doubleHit,freq" 19q13.1 Fc fragment of IgG binding protein 6963 rs741143 FCGBP 8857 19 45054860 NM_003890 NP_003881 A/G A5017V plus 89552 1303 SEQUENOM CEPH CEPH (92) 92 0.37 120 "HapMap,doubleHit,freq" 19q13.1 Fc fragment of IgG binding protein 6964 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 901 AFFY AfAm 12 0.33 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6965 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 902 AFFY Caucasian 24 0.46 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6966 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 903 AFFY Asian 6 0.5 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6967 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 904 AFFY CEPH 12 0.42 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6968 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 905 AFFY PDpanel 48 0.42 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6969 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 89786 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6970 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 4474532 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.26 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6971 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 23217429 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6972 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 23217429 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6973 rs741326 CD207 50489 2 70970490 NM_015717 NP_056532 C/T V278A minus 23217429 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 2p13 "CD207 antigen, langerin" 6974 rs741445 ZNF507 22847 19 37528432 XM_375594 XP_375594 A/C E218D minus 89925 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 19q13.12 zinc finger protein 507 6975 rs741445 ZNF507 22847 19 37528432 XM_375594 XP_375594 A/C E218D minus 24101313 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "by doubleHit,freq,cluster" 19q13.12 zinc finger protein 507 6976 rs741445 ZNF507 22847 19 37528432 XM_375594 XP_375594 A/C E218D minus 24101313 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.35 123 "by doubleHit,freq,cluster" 19q13.12 zinc finger protein 507 6977 rs741445 ZNF507 22847 19 37528432 XM_375594 XP_375594 A/C E218D minus 24101313 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.39 123 "by doubleHit,freq,cluster" 19q13.12 zinc finger protein 507 6978 rs741446 ZNF507 22847 19 37528646 XM_375594 XP_375594 A/G P266L minus 89926 1303 SEQUENOM CEPH CEPH (92) 92 0.32 116 "by doubleHit,freq,cluster" 19q13.12 zinc finger protein 507 6979 rs741842 PAPLN 89932 14 72787473 XM_370765 XP_370765 A/G A411T plus 90475 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by submitter,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 6980 rs741842 PAPLN 89932 14 72787473 XM_370765 XP_370765 A/G A411T plus 24606459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 6981 rs741842 PAPLN 89932 14 72787473 XM_370765 XP_370765 A/G A411T plus 24606459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 6982 rs741842 PAPLN 89932 14 72787473 XM_370765 XP_370765 A/G A411T plus 24606459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 6983 rs742493 UNC5CL 222643 6 41106145 NM_173561 NP_775832 A/G R432G minus 91336 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 6p21.1 unc-5 homolog C (C. elegans)-like 6984 rs742493 UNC5CL 222643 6 41106145 NM_173561 NP_775832 A/G R432G minus 2987198 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.06 123 "by cluster,freq" 6p21.1 unc-5 homolog C (C. elegans)-like 6985 rs742493 UNC5CL 222643 6 41106145 NM_173561 NP_775832 A/G R432G minus 24435638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.18 123 "by cluster,freq" 6p21.1 unc-5 homolog C (C. elegans)-like 6986 rs742493 UNC5CL 222643 6 41106145 NM_173561 NP_775832 A/G R432G minus 24435638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "by cluster,freq" 6p21.1 unc-5 homolog C (C. elegans)-like 6987 rs742493 UNC5CL 222643 6 41106145 NM_173561 NP_775832 A/G R432G minus 24435638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 6p21.1 unc-5 homolog C (C. elegans)-like 6988 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 91617 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.13 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6989 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 91617 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 30 0.5 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6990 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 91617 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 56 0.27 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6991 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 91617 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 328 0.23 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6992 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 91617 1303 SEQUENOM CEPH CEPH (92) 92 0.46 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6993 rs742711 CHGB 1114 20 5852040 NM_001819 NP_001810 C/T R417H minus 3190020 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.42 98 "by cluster,freq" 20pter-p12 chromogranin B (secretogranin 1) 6994 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.49 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 6995 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 76 0.49 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 6996 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.31 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 6997 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.45 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 6998 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.33 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 6999 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.48 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7000 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 92734 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 324 0.44 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7001 rs743580 PML 5371 15 72115169 NM_033239 NP_150242 A/G S772G plus 5157408 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7002 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.49 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7003 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 76 0.49 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7004 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.31 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7005 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.45 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7006 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.33 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7007 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.48 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7008 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 92734 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 324 0.44 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7009 rs743580 PML 5371 15 72115169 NM_033250 NP_150253 A/G S724G plus 5157408 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 15q22 promyelocytic leukemia 7010 rs743581 PML 5371 15 72115194 NM_033239 NP_150242 G/T G780V plus 5157409 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,cluster" 15q22 promyelocytic leukemia 7011 rs743581 PML 5371 15 72115194 NM_033250 NP_150253 G/T G732V plus 5157409 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,cluster" 15q22 promyelocytic leukemia 7012 rs743582 PML 5371 15 72115259 NM_033239 NP_150242 C/G A802P plus 92736 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by cluster,freq" 15q22 promyelocytic leukemia 7013 rs743582 PML 5371 15 72115259 NM_033239 NP_150242 C/G A802P plus 23993765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 15q22 promyelocytic leukemia 7014 rs743582 PML 5371 15 72115259 NM_033239 NP_150242 C/G A802P plus 23993765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 15q22 promyelocytic leukemia 7015 rs743582 PML 5371 15 72115259 NM_033239 NP_150242 C/G A802P plus 23993765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 15q22 promyelocytic leukemia 7016 rs743582 PML 5371 15 72115259 NM_033250 NP_150253 C/G A754P plus 92736 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by cluster,freq" 15q22 promyelocytic leukemia 7017 rs743582 PML 5371 15 72115259 NM_033250 NP_150253 C/G A754P plus 23993765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 15q22 promyelocytic leukemia 7018 rs743582 PML 5371 15 72115259 NM_033250 NP_150253 C/G A754P plus 23993765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 15q22 promyelocytic leukemia 7019 rs743582 PML 5371 15 72115259 NM_033250 NP_150253 C/G A754P plus 23993765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 15q22 promyelocytic leukemia 7020 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 92782 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7021 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 92782 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7022 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 8485032 693 EGP_SNPS PDR90 NIHPDR 170 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7023 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 24706948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7024 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 24706948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7025 rs743616 ARSA 410 22 49354183 NM_000487 NP_000478 C/G T391S plus 24706948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 7026 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 92903 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.29 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7027 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 92903 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.28 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7028 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 92903 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7029 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 92903 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.37 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7030 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 92903 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7031 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 24562380 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7032 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 24562380 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7033 rs743686 KRTHA5 3886 17 36890770 NM_002280 NP_002271 A/G S6P plus 24562380 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 5" 7034 rs743920 EMID1 129080 22 27945682 NM_133455 NP_597712 C/G A107G minus 3195229 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.45 117 "HapMap,doubleHit,submitter,freq,cluster" 22q12.2 EMI domain containing 1 7035 rs743920 EMID1 129080 22 27945682 NM_133455 NP_597712 C/G A107G minus 8017532 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 117 "HapMap,doubleHit,submitter,freq,cluster" 22q12.2 EMI domain containing 1 7036 rs743920 EMID1 129080 22 27945682 NM_133455 NP_597712 C/G A107G minus 8017532 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "HapMap,doubleHit,submitter,freq,cluster" 22q12.2 EMI domain containing 1 7037 rs743923 SLC26A8 116369 6 36088099 NM_052961 NP_443193 A/G V73M minus 93222 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7038 rs743923 SLC26A8 116369 6 36088099 NM_052961 NP_443193 A/G V73M minus 23355542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7039 rs743923 SLC26A8 116369 6 36088099 NM_052961 NP_443193 A/G V73M minus 23355542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7040 rs743923 SLC26A8 116369 6 36088099 NM_052961 NP_443193 A/G V73M minus 23355542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7041 rs743923 SLC26A8 116369 6 36088099 NM_138718 NP_619732 A/G V73M minus 93222 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7042 rs743923 SLC26A8 116369 6 36088099 NM_138718 NP_619732 A/G V73M minus 23355542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7043 rs743923 SLC26A8 116369 6 36088099 NM_138718 NP_619732 A/G V73M minus 23355542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7044 rs743923 SLC26A8 116369 6 36088099 NM_138718 NP_619732 A/G V73M minus 23355542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 6p21 "solute carrier family 26, member 8" 7045 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 93626 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.17 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7046 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 93626 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.21 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7047 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 93626 640 TSC-CSHL TSC_42_A TSC Asian (42) 80 0.26 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7048 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 24241465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7049 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 24241465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7050 rs744224 IQGAP3 128239 1 153331452 NM_178229 NP_839943 A/G R663C plus 24241465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq" 1q23.1 IQ motif containing GTPase activating protein 3 7051 rs745142 HLC-8 55028 17 68744476 NM_017941 NP_060411 C/G Q420H minus 94833 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 7052 rs745142 HLC-8 55028 17 68744476 NM_017941 NP_060411 C/G Q420H minus 24706949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 7053 rs745142 HLC-8 55028 17 68744476 NM_017941 NP_060411 C/G Q420H minus 24706949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 7054 rs745142 HLC-8 55028 17 68744476 NM_017941 NP_060411 C/G Q420H minus 24706949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 7055 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.32 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7056 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.35 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7057 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7058 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.43 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7059 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 885 TSC-CSHL HapMap-CEPH-30-trios 59 0.5 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7060 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 94834 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7061 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 24706945 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7062 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 24706945 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7063 rs745143 HLC-8 55028 17 68744282 NM_017941 NP_060411 A/G F356L minus 24706945 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 7064 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 94920 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7065 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 94920 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.18 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7066 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 94920 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7067 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 94920 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.01 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7068 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 23518205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7069 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 23518205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7070 rs745211 PKD1L2 114780 16 79765849 NM_182740 NP_877417 A/C L919M minus 23518205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 7071 rs745400 RUTBC1 9905 17 2213549 XM_029438 XP_029438 A/G R238K plus 95194 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq,cluster" 17p13.3 RUN and TBC1 domain containing 1 7072 rs746924 TBC1D8 11138 2 101082989 NM_007063 NP_008994 C/T R836G plus 97288 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,submitter,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 7073 rs746924 TBC1D8 11138 2 101082989 NM_007063 NP_008994 C/T R836G plus 4925012 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.35 123 "by doubleHit,submitter,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 7074 rs746924 TBC1D8 11138 2 101082989 NM_007063 NP_008994 C/T R836G plus 23217810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 7075 rs746924 TBC1D8 11138 2 101082989 NM_007063 NP_008994 C/T R836G plus 23217810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 7076 rs746924 TBC1D8 11138 2 101082989 NM_007063 NP_008994 C/T R836G plus 23217810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 7077 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 686 TSC-SANGER SC_12_A CORIELL African American (12) 2 0.06 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7078 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7079 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7080 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7081 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 178 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7082 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 885 TSC-CSHL HapMap-CEPH-30-trios 102 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7083 rs747300 GALNT6 11226 12 50039284 NM_007210 NP_009141 A/G V423I minus 97786 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) 7084 rs747345 KBTBD9 114818 2 23562703 XM_496546 XP_496546 A/G V1166M plus 24294320 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7085 rs747345 KBTBD9 114818 2 23562703 XM_496546 XP_496546 A/G V1166M plus 24294320 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7086 rs747345 KBTBD9 114818 2 23562703 XM_496546 XP_496546 A/G V1166M plus 24294320 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7087 rs749902 TRIM45 80263 1 117372796 NM_025188 NP_079464 A/G C375Y minus 101432 1303 SEQUENOM CEPH CEPH (92) 92 0.47 116 "by doubleHit,freq,cluster" 1p12 tripartite motif-containing 45 7088 rs750559 MICAL3 57553 22 16699118 XM_032997 XP_032997 C/T R970H plus 102375 1303 SEQUENOM CEPH CEPH (92) 92 0.48 119 "by doubleHit,freq,cluster" 22q11.21 flavoprotein oxidoreductase MICAL3 7089 rs751019 PTK2B 2185 8 27364502 NM_004103 NP_004094 A/C K838T plus 3215481 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.45 100 "by submitter,freq,cluster" 8p21.1 PTK2B protein tyrosine kinase 2 beta 7090 rs751019 PTK2B 2185 8 27364502 NM_173174 NP_775266 A/C K838T plus 3215481 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.45 100 "by submitter,freq,cluster" 8p21.1 PTK2B protein tyrosine kinase 2 beta 7091 rs751019 PTK2B 2185 8 27364502 NM_173175 NP_775267 A/C K796T plus 3215481 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.45 100 "by submitter,freq,cluster" 8p21.1 PTK2B protein tyrosine kinase 2 beta 7092 rs751019 PTK2B 2185 8 27364502 NM_173176 NP_775268 A/C K838T plus 3215481 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.45 100 "by submitter,freq,cluster" 8p21.1 PTK2B protein tyrosine kinase 2 beta 7093 rs751141 EPHX2 2053 8 27429782 NM_001979 NP_001970 C/T R287Q minus 103248 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq,cluster" 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 7094 rs751141 EPHX2 2053 8 27429782 NM_001979 NP_001970 C/T R287Q minus 24085004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 7095 rs751141 EPHX2 2053 8 27429782 NM_001979 NP_001970 C/T R287Q minus 24085004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by doubleHit,submitter,freq,cluster" 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 7096 rs751141 EPHX2 2053 8 27429782 NM_001979 NP_001970 C/T R287Q minus 24085004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 7097 rs751313 KBTBD9 114818 2 23818049 XM_496546 XP_496546 G/T L4689F plus 103532 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.37 86 "HapMap,doubleHit,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7098 rs751313 KBTBD9 114818 2 23818049 XM_496546 XP_496546 G/T L4689F plus 103532 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.17 86 "HapMap,doubleHit,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7099 rs751313 KBTBD9 114818 2 23818049 XM_496546 XP_496546 G/T L4689F plus 103532 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 86 "HapMap,doubleHit,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 7100 rs751557 COL9A3 1299 20 60933967 NM_001853 NP_001844 G/T A435E minus 8310476 1303 SEQUENOM CEPH CEPH (92) 92 0.2 121 "by doubleHit,freq,cluster" 20q13.3 "collagen, type IX, alpha 3" 7101 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 106711 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.12 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7102 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 106711 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.42 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7103 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 106711 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7104 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 106711 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7105 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 3172908 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.48 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7106 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 3189449 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7107 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 3758713 686 TSC-SANGER SC_12_A CORIELL African American (12) 6 0.14 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7108 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 3758713 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 16 0.33 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7109 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 3758713 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 4 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7110 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 24517442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7111 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 24517442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7112 rs753381 PLCG1 5335 20 39230879 NM_002660 NP_002651 A/G I813T minus 24517442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7113 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 106711 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.12 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7114 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 106711 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.42 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7115 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 106711 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7116 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 106711 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7117 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 3172908 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.48 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7118 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 3189449 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7119 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 3758713 686 TSC-SANGER SC_12_A CORIELL African American (12) 6 0.14 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7120 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 3758713 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 16 0.33 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7121 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 3758713 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 4 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7122 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 24517442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7123 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 24517442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7124 rs753381 PLCG1 5335 20 39230879 NM_182811 NP_877963 A/G I813T minus 24517442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 20q12-q13.1 "phospholipase C, gamma 1" 7125 rs753856 HSPA6 3310 1 158309189 NM_002155 NP_002146 C/G D562E minus 107367 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 7126 rs753856 HSPA6 3310 1 158309189 NM_002155 NP_002146 C/G D562E minus 23841741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 7127 rs753856 HSPA6 3310 1 158309189 NM_002155 NP_002146 C/G D562E minus 23841741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 7128 rs753856 HSPA6 3310 1 158309189 NM_002155 NP_002146 C/G D562E minus 23841741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by doubleHit,freq,cluster" 1q23 heat shock 70kDa protein 6 (HSP70B') 7129 rs754093 NFATC1 4772 18 75347394 NM_006162 NP_006153 G/T C751G plus 107696 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7130 rs754093 NFATC1 4772 18 75347394 NM_006162 NP_006153 G/T C751G plus 3177212 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.23 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7131 rs754093 NFATC1 4772 18 75347394 NM_006162 NP_006153 G/T C751G plus 3214652 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7132 rs754093 NFATC1 4772 18 75347394 NM_172387 NP_765975 G/T C738G plus 107696 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7133 rs754093 NFATC1 4772 18 75347394 NM_172387 NP_765975 G/T C738G plus 3177212 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.23 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7134 rs754093 NFATC1 4772 18 75347394 NM_172387 NP_765975 G/T C738G plus 3214652 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7135 rs754093 NFATC1 4772 18 75347394 NM_172388 NP_765976 G/T C279G plus 107696 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7136 rs754093 NFATC1 4772 18 75347394 NM_172388 NP_765976 G/T C279G plus 3177212 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.23 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7137 rs754093 NFATC1 4772 18 75347394 NM_172388 NP_765976 G/T C279G plus 3214652 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7138 rs754093 NFATC1 4772 18 75347394 NM_172389 NP_765977 G/T C738G plus 107696 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7139 rs754093 NFATC1 4772 18 75347394 NM_172389 NP_765977 G/T C738G plus 3177212 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.23 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7140 rs754093 NFATC1 4772 18 75347394 NM_172389 NP_765977 G/T C738G plus 3214652 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 121 "by doubleHit,freq,cluster" 18q23 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1" 7141 rs754511 MYH7B 57644 20 33039338 XM_371398 XP_371398 A/T F501Y minus 108307 1303 SEQUENOM CEPH CEPH (92) 92 0.01 111 by doubleHit 20q11.23 "myosin, heavy polypeptide 7B, cardiac muscle, beta" 7142 rs754615 CAST 831 5 96112090 NM_001750 NP_001741 C/G C408S plus 108433 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7143 rs754615 CAST 831 5 96112090 NM_001750 NP_001741 C/G C408S plus 24448333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7144 rs754615 CAST 831 5 96112090 NM_001750 NP_001741 C/G C408S plus 24448333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7145 rs754615 CAST 831 5 96112090 NM_001750 NP_001741 C/G C408S plus 24448333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7146 rs754615 CAST 831 5 96112090 NM_173060 NP_775083 C/G C386S plus 108433 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7147 rs754615 CAST 831 5 96112090 NM_173060 NP_775083 C/G C386S plus 24448333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7148 rs754615 CAST 831 5 96112090 NM_173060 NP_775083 C/G C386S plus 24448333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7149 rs754615 CAST 831 5 96112090 NM_173060 NP_775083 C/G C386S plus 24448333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7150 rs754615 CAST 831 5 96112090 NM_173061 NP_775084 C/G C131S plus 108433 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7151 rs754615 CAST 831 5 96112090 NM_173061 NP_775084 C/G C131S plus 24448333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7152 rs754615 CAST 831 5 96112090 NM_173061 NP_775084 C/G C131S plus 24448333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7153 rs754615 CAST 831 5 96112090 NM_173061 NP_775084 C/G C131S plus 24448333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7154 rs754615 CAST 831 5 96112090 NM_173062 NP_775085 C/G C290S plus 108433 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7155 rs754615 CAST 831 5 96112090 NM_173062 NP_775085 C/G C290S plus 24448333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7156 rs754615 CAST 831 5 96112090 NM_173062 NP_775085 C/G C290S plus 24448333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7157 rs754615 CAST 831 5 96112090 NM_173062 NP_775085 C/G C290S plus 24448333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 5q15-q21 calpastatin 7158 rs755237 ANKRD25 25959 19 11165404 NM_015493 NP_056308 C/T G118S plus 109301 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.04 86 "HapMap,freq" 19p13.2 ankyrin repeat domain 25 7159 rs755237 ANKRD25 25959 19 11165404 NM_015493 NP_056308 C/T G118S plus 109301 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.06 86 "HapMap,freq" 19p13.2 ankyrin repeat domain 25 7160 rs755237 ANKRD25 25959 19 11165404 NM_015493 NP_056308 C/T G118S plus 109301 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.02 86 "HapMap,freq" 19p13.2 ankyrin repeat domain 25 7161 rs755237 ANKRD25 25959 19 11165404 NM_015493 NP_056308 C/T G118S plus 109301 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 86 "HapMap,freq" 19p13.2 ankyrin repeat domain 25 7162 rs755237 ANKRD25 25959 19 11165404 NM_015493 NP_056308 C/T G118S plus 109301 1303 SEQUENOM CEPH CEPH (92) 92 0.3 86 "HapMap,freq" 19p13.2 ankyrin repeat domain 25 7163 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7164 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7165 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7166 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7167 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7168 rs755793 FGFR2 2263 10 123300861 NM_000141 NP_000132 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7169 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7170 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7171 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7172 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7173 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7174 rs755793 FGFR2 2263 10 123300861 NM_022969 NP_075258 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7175 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7176 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7177 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7178 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7179 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7180 rs755793 FGFR2 2263 10 123300861 NM_022970 NP_075259 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7181 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7182 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7183 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7184 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7185 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7186 rs755793 FGFR2 2263 10 123300861 NM_022971 NP_075260 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7187 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7188 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7189 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7190 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7191 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7192 rs755793 FGFR2 2263 10 123300861 NM_022972 NP_075261 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7193 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7194 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7195 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7196 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7197 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7198 rs755793 FGFR2 2263 10 123300861 NM_022973 NP_075262 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7199 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7200 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7201 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7202 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7203 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7204 rs755793 FGFR2 2263 10 123300861 NM_022974 NP_075263 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7205 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7206 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7207 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7208 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7209 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7210 rs755793 FGFR2 2263 10 123300861 NM_022975 NP_075264 C/T M97T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7211 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7212 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7213 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7214 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7215 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7216 rs755793 FGFR2 2263 10 123300861 NM_022976 NP_075265 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7217 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7218 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7219 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7220 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7221 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7222 rs755793 FGFR2 2263 10 123300861 NM_023028 NP_075417 C/T M186T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7223 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7224 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7225 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7226 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7227 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7228 rs755793 FGFR2 2263 10 123300861 NM_023029 NP_075418 C/T M97T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7229 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7230 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7231 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7232 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7233 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7234 rs755793 FGFR2 2263 10 123300861 NM_023030 NP_075419 C/T M71T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7235 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 110143 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7236 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 110143 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7237 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 110143 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7238 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 23605078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7239 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 23605078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7240 rs755793 FGFR2 2263 10 123300861 NM_023031 NP_075420 C/T M71T minus 23605078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q26 "fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)" 7241 rs757081 NUCB2 4925 11 17308259 NM_005013 NP_005004 C/G Q338E minus 128830 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 86 "HapMap,submitter,freq" 11p15.1-p14 nucleobindin 2 7242 rs757081 NUCB2 4925 11 17308259 NM_005013 NP_005004 C/G Q338E minus 128830 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 86 "HapMap,submitter,freq" 11p15.1-p14 nucleobindin 2 7243 rs757081 NUCB2 4925 11 17308259 NM_005013 NP_005004 C/G Q338E minus 128830 1303 SEQUENOM CEPH CEPH (92) 92 0.41 86 "HapMap,submitter,freq" 11p15.1-p14 nucleobindin 2 7244 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.06 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7245 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.32 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7246 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7247 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7248 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.46 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7249 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.46 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7250 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 128868 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7251 rs757110 ABCC8 6833 11 17375053 NM_000352 NP_000343 G/T A1369S minus 12587336 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.37 123 "by doubleHit,freq,cluster" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 7252 rs757259 TRIM40 135644 6 30223521 NM_138700 NP_619645 C/T E215K minus 7870109 1303 SEQUENOM CEPH CEPH (92) 92 0.31 118 "by doubleHit,freq,cluster" 6p21.32 tripartite motif-containing 40 7253 rs757262 TRIM40 135644 6 30222934 NM_138700 NP_619645 A/G T183M minus 7856282 1303 SEQUENOM CEPH CEPH (92) 46 0.5 118 "by doubleHit,freq,cluster" 6p21.32 tripartite motif-containing 40 7254 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 129607 638 TSC-CSHL TSC_42_AA TSC African American (42) 70 0.46 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7255 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 129607 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.19 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7256 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 129607 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.28 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7257 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 5184931 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7258 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 5184931 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7259 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 23665295 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7260 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 23665295 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.47 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7261 rs757660 SEC14L2 23541 22 29117691 NM_012429 NP_036561 A/G R11K plus 23665295 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.31 123 "HapMap,doubleHit,freq,cluster" 22q12.2 SEC14-like 2 (S. cerevisiae) 7262 rs757978 FARP2 9855 2 242091091 XM_376193 XP_376193 A/G T260I minus 130015 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,submitter,freq" 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 7263 rs757978 FARP2 9855 2 242091091 XM_376193 XP_376193 A/G T260I minus 130015 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,submitter,freq" 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 7264 rs757978 FARP2 9855 2 242091091 XM_376193 XP_376193 A/G T260I minus 24345791 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,submitter,freq" 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 7265 rs757978 FARP2 9855 2 242091091 XM_376193 XP_376193 A/G T260I minus 24345791 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,submitter,freq" 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 7266 rs757978 FARP2 9855 2 242091091 XM_376193 XP_376193 A/G T260I minus 24345791 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq" 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 7267 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 4919934 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7268 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 5169600 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7269 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 5169600 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7270 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 23658114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7271 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 23658114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7272 rs758037 SH3RF2 153769 5 145373557 NM_152550 NP_689763 C/T R267C plus 23658114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 5q32 SH3 domain containing ring finger 2 7273 rs758329 KSP37 83888 4 15640754 NM_031950 NP_114156 C/T P90S minus 24294080 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 4p16 Ksp37 protein 7274 rs758329 KSP37 83888 4 15640754 NM_031950 NP_114156 C/T P90S minus 24294080 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 4p16 Ksp37 protein 7275 rs758329 KSP37 83888 4 15640754 NM_031950 NP_114156 C/T P90S minus 24294080 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 4p16 Ksp37 protein 7276 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 131985 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7277 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 131985 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7278 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 131985 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7279 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 5159790 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7280 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 5159790 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7281 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 23207297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7282 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 23207297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7283 rs759458 SLC1A4 6509 2 65157016 NM_003038 NP_003029 C/T V399I minus 23207297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2p15-p13 "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4" 7284 rs760077 MTX1 4580 1 151991855 NM_002455 NP_002446 A/T T63S minus 132816 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "by doubleHit,freq" 1q21 metaxin 1 7285 rs760077 MTX1 4580 1 151991855 NM_198883 NP_942584 A/T T63S minus 132816 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "by doubleHit,freq" 1q21 metaxin 1 7286 rs760134 KRT13 3860 17 36914892 NM_002274 NP_002265 C/G A146G minus 132909 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 111 by freq 17q12-q21.2 keratin 13 7287 rs760134 KRT13 3860 17 36914892 NM_002274 NP_002265 C/G A146G minus 132909 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 111 by freq 17q12-q21.2 keratin 13 7288 rs760134 KRT13 3860 17 36914892 NM_002274 NP_002265 C/G A146G minus 132909 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 111 by freq 17q12-q21.2 keratin 13 7289 rs760134 KRT13 3860 17 36914892 NM_002274 NP_002265 C/G A146G minus 132909 1303 SEQUENOM CEPH CEPH (92) 92 0.4 111 by freq 17q12-q21.2 keratin 13 7290 rs760134 KRT13 3860 17 36914892 NM_153490 NP_705694 C/G A146G minus 132909 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 111 by freq 17q12-q21.2 keratin 13 7291 rs760134 KRT13 3860 17 36914892 NM_153490 NP_705694 C/G A146G minus 132909 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 111 by freq 17q12-q21.2 keratin 13 7292 rs760134 KRT13 3860 17 36914892 NM_153490 NP_705694 C/G A146G minus 132909 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 111 by freq 17q12-q21.2 keratin 13 7293 rs760134 KRT13 3860 17 36914892 NM_153490 NP_705694 C/G A146G minus 132909 1303 SEQUENOM CEPH CEPH (92) 92 0.4 111 by freq 17q12-q21.2 keratin 13 7294 rs760242 DHCR7 1717 11 70824224 NM_001360 NP_001351 A/G G425S minus 133063 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 by doubleHit 11q13.2-q13.5 7-dehydrocholesterol reductase 7295 rs760242 DHCR7 1717 11 70824224 NM_001360 NP_001351 A/G G425S minus 133063 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 by doubleHit 11q13.2-q13.5 7-dehydrocholesterol reductase 7296 rs760242 DHCR7 1717 11 70824224 NM_001360 NP_001351 A/G G425S minus 133063 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 by doubleHit 11q13.2-q13.5 7-dehydrocholesterol reductase 7297 rs760242 DHCR7 1717 11 70824224 NM_001360 NP_001351 A/G G425S minus 133063 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by doubleHit 11q13.2-q13.5 7-dehydrocholesterol reductase 7298 rs760357 TPSG1 25823 16 1213491 NM_012467 NP_036599 A/G V60M minus 133243 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.27 100 "by cluster,freq" 16p13.3 tryptase gamma 1 7299 rs760357 TPSG1 25823 16 1213491 NM_012467 NP_036599 A/G V60M minus 133243 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 100 "by cluster,freq" 16p13.3 tryptase gamma 1 7300 rs760357 TPSG1 25823 16 1213491 NM_012467 NP_036599 A/G V60M minus 133243 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 100 "by cluster,freq" 16p13.3 tryptase gamma 1 7301 rs760357 TPSG1 25823 16 1213491 NM_012467 NP_036599 A/G V60M minus 133243 1303 SEQUENOM CEPH CEPH (92) 92 0.29 100 "by cluster,freq" 16p13.3 tryptase gamma 1 7302 rs760357 TPSG1 25823 16 1213491 NM_012467 NP_036599 A/G V60M minus 3238071 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.14 100 "by cluster,freq" 16p13.3 tryptase gamma 1 7303 rs760644 XTP2 23215 1 168240985 NM_015172 NP_055987 A/G A906T plus 23201172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 1q23.3 HBxAg transactivated protein 2 7304 rs760644 XTP2 23215 1 168240985 NM_015172 NP_055987 A/G A906T plus 23201172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1q23.3 HBxAg transactivated protein 2 7305 rs760644 XTP2 23215 1 168240985 NM_015172 NP_055987 A/G A906T plus 23201172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q23.3 HBxAg transactivated protein 2 7306 rs760749 MOV10L1 54456 22 48858143 NM_018995 NP_061868 A/C I454L plus 24214763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 7307 rs760749 MOV10L1 54456 22 48858143 NM_018995 NP_061868 A/C I454L plus 24214763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 7308 rs760749 MOV10L1 54456 22 48858143 NM_018995 NP_061868 A/C I454L plus 24214763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 7309 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 136329 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7310 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 136329 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7311 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 136329 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7312 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 136329 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 66 0.14 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7313 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 136329 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7314 rs762562 ASE-1 10849 19 50604183 NM_012099 NP_036231 A/G K373E plus 4473481 693 EGP_SNPS PDR90 NIHPDR 128 0.33 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 7315 rs762679 MCM4 4173 8 49047989 NM_005914 NP_005905 A/T L650M minus 14343538 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7316 rs762679 MCM4 4173 8 49047989 NM_005914 NP_005905 A/T L650M minus 24481164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7317 rs762679 MCM4 4173 8 49047989 NM_005914 NP_005905 A/T L650M minus 24481164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7318 rs762679 MCM4 4173 8 49047989 NM_005914 NP_005905 A/T L650M minus 24481164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7319 rs762679 MCM4 4173 8 49047989 NM_182746 NP_877423 A/T L650M minus 14343538 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7320 rs762679 MCM4 4173 8 49047989 NM_182746 NP_877423 A/T L650M minus 24481164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7321 rs762679 MCM4 4173 8 49047989 NM_182746 NP_877423 A/T L650M minus 24481164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7322 rs762679 MCM4 4173 8 49047989 NM_182746 NP_877423 A/T L650M minus 24481164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q11.2 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) 7323 rs763361 CD226 10666 18 65682622 NM_006566 NP_006557 C/T S307G plus 149473 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.3 CD226 antigen 7324 rs763361 CD226 10666 18 65682622 NM_006566 NP_006557 C/T S307G plus 149473 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.3 CD226 antigen 7325 rs763361 CD226 10666 18 65682622 NM_006566 NP_006557 C/T S307G plus 24509880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.3 CD226 antigen 7326 rs763361 CD226 10666 18 65682622 NM_006566 NP_006557 C/T S307G plus 24509880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.3 CD226 antigen 7327 rs763361 CD226 10666 18 65682622 NM_006566 NP_006557 C/T S307G plus 24509880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.3 CD226 antigen 7328 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 150059 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7329 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 15355403 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7330 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 15355403 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7331 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 15355403 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7332 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 23341837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7333 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 23341837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7334 rs763780 IL17F 112744 6 52209698 NM_052872 NP_443104 C/T H161R plus 23341837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7335 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 150059 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7336 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 15355403 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7337 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 15355403 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7338 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 15355403 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7339 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 23341837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7340 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 23341837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7341 rs763780 IL17F 112744 6 52209698 NM_172343 NP_758846 C/T H107R plus 23341837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq,cluster" 6p12 interleukin 17F 7342 rs764264 VNN3 55350 6 133097427 NM_078625 NP_523239 C/T H33R plus 150727 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 6q23-q24 vanin 3 7343 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7344 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.04 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7345 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7346 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 901 AFFY AfAm 40 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7347 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 902 AFFY Caucasian 40 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7348 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 903 AFFY Asian 40 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7349 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 904 AFFY CEPH 36 0.06 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7350 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 905 AFFY PDpanel 34 0.15 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7351 rs764535 TLR5 7100 1 2901488 NM_003268 NP_003259 A/G T82I plus 151118 906 AFFY APE 4 1 86 "by submitter,freq" 1q41-q42 toll-like receptor 5 7352 rs765593 MUS81 80198 11 65389308 NM_025128 NP_079404 C/G Q481H plus 152571 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 by doubleHit 11q13 MUS81 endonuclease homolog (yeast) 7353 rs765593 MUS81 80198 11 65389308 NM_025128 NP_079404 C/G Q481H plus 152571 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 by doubleHit 11q13 MUS81 endonuclease homolog (yeast) 7354 rs765593 MUS81 80198 11 65389308 NM_025128 NP_079404 C/G Q481H plus 152571 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 by doubleHit 11q13 MUS81 endonuclease homolog (yeast) 7355 rs765593 MUS81 80198 11 65389308 NM_025128 NP_079404 C/G Q481H plus 152571 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by doubleHit 11q13 MUS81 endonuclease homolog (yeast) 7356 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.14 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7357 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 901 AFFY AfAm 6 1 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7358 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 902 AFFY Caucasian 26 0.12 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7359 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 903 AFFY Asian 18 1 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7360 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 904 AFFY CEPH 26 0.15 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7361 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 905 AFFY PDpanel 46 0.2 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7362 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 906 AFFY APE 2 1 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7363 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 152765 1303 SEQUENOM CEPH CEPH (92) 92 0.1 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7364 rs765746 ZNF30 90075 19 40126909 NM_194325 NP_919306 C/T Y319C minus 4932259 738 YUSUKE JBIC-ALLELE Japanese (752) 722 0.33 119 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 7365 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 153385 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.14 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7366 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 153385 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7367 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 153385 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7368 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7369 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.03 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7370 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 776 SNP500CANCER AFR1 African / African-American (24) 48 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7371 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7372 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7373 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 5586314 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7374 rs766173 BRCA2 675 13 31804480 NM_000059 NP_000050 G/T N289H minus 16355779 693 EGP_SNPS PDR90 NIHPDR 178 0.04 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 7375 rs766874 CFTR 1080 7 116825986 NM_000492 NP_000483 A/G S605F minus 154329 638 TSC-CSHL TSC_42_AA TSC African American (42) 72 0.01 86 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 7376 rs766874 CFTR 1080 7 116825986 NM_000492 NP_000483 A/G S605F minus 154329 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 74 1 86 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 7377 rs766874 CFTR 1080 7 116825986 NM_000492 NP_000483 A/G S605F minus 154329 640 TSC-CSHL TSC_42_A TSC Asian (42) 63 0.44 86 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 7378 rs766874 CFTR 1080 7 116825986 NM_000492 NP_000483 A/G S605F minus 154329 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 7379 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.39 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7380 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.11 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7381 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.15 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7382 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7383 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 901 AFFY AfAm 40 0.4 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7384 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 902 AFFY Caucasian 40 0.1 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7385 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 903 AFFY Asian 40 0.18 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7386 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 904 AFFY CEPH 56 0.2 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7387 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 905 AFFY PDpanel 48 0.25 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7388 rs768166 TAF3 83860 10 8087556 XM_291729 XP_291729 A/C I1085R minus 156162 906 AFFY APE 4 1 120 "HapMap,doubleHit,submitter,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 7389 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 901 AFFY AfAm 12 0.08 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7390 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 902 AFFY Caucasian 24 0.04 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7391 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 903 AFFY Asian 12 0.25 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7392 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 904 AFFY CEPH 12 0.17 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7393 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 905 AFFY PDpanel 42 0.17 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7394 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 157378 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7395 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 24049885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7396 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 24049885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7397 rs768994 RSHL2 83861 6 159369757 NM_031924 NP_114130 C/T M439T minus 24049885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q25.3 radial spokehead-like 2 7398 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7399 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7400 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7401 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7402 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7403 rs769020 DDX5 1655 17 59929028 NM_004396 NP_004387 A/G R362K minus 157413 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 7404 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 869718 506 NCBI NIHPDR NIHPDR 452 0 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7405 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 869718 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7406 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 869718 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7407 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 869718 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7408 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 4388616 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7409 rs769193 MPG 4350 16 75652 NM_002434 NP_002425 C/T A258V plus 4388616 1303 SEQUENOM CEPH CEPH (92) 92 1 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 7410 rs769194 GRM8 2918 7 126477181 NM_000845 NP_000836 C/G S10C minus 869737 506 NCBI NIHPDR NIHPDR 92 0.01 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7411 rs769194 GRM8 2918 7 126477181 NM_000845 NP_000836 C/G S10C minus 869737 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7412 rs769194 GRM8 2918 7 126477181 NM_000845 NP_000836 C/G S10C minus 869737 1303 SEQUENOM CEPH CEPH (92) 92 1 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7413 rs769202 GRM8 2918 7 126477148 NM_000845 NP_000836 G/T F21C minus 869746 506 NCBI NIHPDR NIHPDR 166 0.01 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7414 rs769202 GRM8 2918 7 126477148 NM_000845 NP_000836 G/T F21C minus 869746 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7415 rs769202 GRM8 2918 7 126477148 NM_000845 NP_000836 G/T F21C minus 869746 1303 SEQUENOM CEPH CEPH (92) 92 1 101 "HapMap,cluster" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 7416 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 869797 555 UUGC NIH90 NIHPDR 178 0.03 121 "by cluster,freq" 4q25-q31 cyclin A2 7417 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 4478779 693 EGP_SNPS PDR90 NIHPDR 170 0.04 121 "by cluster,freq" 4q25-q31 cyclin A2 7418 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 121 "by cluster,freq" 4q25-q31 cyclin A2 7419 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 121 "by cluster,freq" 4q25-q31 cyclin A2 7420 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 4q25-q31 cyclin A2 7421 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 121 "by cluster,freq" 4q25-q31 cyclin A2 7422 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 121 "by cluster,freq" 4q25-q31 cyclin A2 7423 rs769242 CCNA2 890 4 123099822 NM_001237 NP_001228 A/G I163V minus 5586326 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 4q25-q31 cyclin A2 7424 rs769403 GAD1 2571 2 171539042 NM_000817 NP_000808 G/T V474G plus 870094 506 NCBI NIHPDR NIHPDR 86 0.03 101 "by cluster,freq" 2q31 "glutamate decarboxylase 1 (brain, 67kDa)" 7425 rs769416 NBS1 4683 8 91052633 NM_002485 NP_002476 G/T Q216K plus 870110 506 NCBI NIHPDR NIHPDR 156 0.01 121 "by cluster,freq" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7426 rs769416 NBS1 4683 8 91052633 NM_002485 NP_002476 G/T Q216K plus 22970238 693 EGP_SNPS PDR90 NIHPDR 176 0.01 121 "by cluster,freq" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7427 rs769416 NBS1 4683 8 91052633 NM_002485 NP_002476 G/T Q216K plus 22970238 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7428 rs769420 NBS1 4683 8 91051867 NM_002485 NP_002476 A/G P266L plus 870114 506 NCBI NIHPDR NIHPDR 170 0.03 121 "HapMap,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7429 rs769420 NBS1 4683 8 91051867 NM_002485 NP_002476 A/G P266L plus 22970244 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "HapMap,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7430 rs769420 NBS1 4683 8 91051867 NM_002485 NP_002476 A/G P266L plus 22970244 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7431 rs769420 NBS1 4683 8 91051867 NM_002485 NP_002476 A/G P266L plus 22970244 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 7432 rs769423 OR1D2 4991 17 2942967 NM_002548 NP_002539 A/G R25Q minus 24809186 1303 SEQUENOM CEPH CEPH (92) 184 0.17 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 1, subfamily D, member 2" 7433 rs769427 OR1A1 8383 17 3066517 NM_014565 NP_055380 C/T P285S plus 870122 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by submitter,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 7434 rs769427 OR1A1 8383 17 3066517 NM_014565 NP_055380 C/T P285S plus 24704264 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 7435 rs769427 OR1A1 8383 17 3066517 NM_014565 NP_055380 C/T P285S plus 24704264 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 7436 rs769427 OR1A1 8383 17 3066517 NM_014565 NP_055380 C/T P285S plus 24704264 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by submitter,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 7437 rs769443 FAU 2197 11 64644854 NM_001997 NP_001988 A/G V93M minus 870145 555 UUGC NIH90 NIHPDR 180 0.01 119 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 7438 rs769443 FAU 2197 11 64644854 NM_001997 NP_001988 A/G V93M minus 12709619 693 EGP_SNPS PDR90 NIHPDR 178 0.01 119 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 7439 rs769443 FAU 2197 11 64644854 NM_001997 NP_001988 A/G V93M minus 12709619 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "by cluster,freq" 11q13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 7440 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 563 DEBNICK MDECODE-1 European-Americans 48 0.02 86 by freq 19q13.2 apolipoprotein E 7441 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 564 DEBNICK MDECODE-2 Finnish 48 1 86 by freq 19q13.2 apolipoprotein E 7442 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 565 DEBNICK MDECODE-3 African-American 48 1 86 by freq 19q13.2 apolipoprotein E 7443 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 566 DEBNICK MDECODE-4 Mayan Amerindians from Mexico 48 1 86 by freq 19q13.2 apolipoprotein E 7444 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 19q13.2 apolipoprotein E 7445 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 19q13.2 apolipoprotein E 7446 rs769452 APOE 348 19 50102950 NM_000041 NP_000032 C/T L46P plus 870160 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 19q13.2 apolipoprotein E 7447 rs769455 APOE 348 19 50103880 NM_000041 NP_000032 C/T R163C plus 870164 563 DEBNICK MDECODE-1 European-Americans 48 1 120 "by cluster,freq" 19q13.2 apolipoprotein E 7448 rs769455 APOE 348 19 50103880 NM_000041 NP_000032 C/T R163C plus 870164 564 DEBNICK MDECODE-2 Finnish 48 1 120 "by cluster,freq" 19q13.2 apolipoprotein E 7449 rs769455 APOE 348 19 50103880 NM_000041 NP_000032 C/T R163C plus 870164 565 DEBNICK MDECODE-3 African-American 48 0.04 120 "by cluster,freq" 19q13.2 apolipoprotein E 7450 rs769455 APOE 348 19 50103880 NM_000041 NP_000032 C/T R163C plus 870164 566 DEBNICK MDECODE-4 Mayan Amerindians from Mexico 48 1 120 "by cluster,freq" 19q13.2 apolipoprotein E 7451 rs769455 APOE 348 19 50103880 NM_000041 NP_000032 C/T R163C plus 17624004 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 19q13.2 apolipoprotein E 7452 rs770087 DUSP6 1848 12 88247241 NM_001946 NP_001937 G/T S144A minus 1798733 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,freq,cluster" 12q22-q23 dual specificity phosphatase 6 7453 rs770087 DUSP6 1848 12 88247241 NM_001946 NP_001937 G/T S144A minus 3217272 738 YUSUKE JBIC-ALLELE Japanese (752) 918 0.03 123 "by doubleHit,freq,cluster" 12q22-q23 dual specificity phosphatase 6 7454 rs770087 DUSP6 1848 12 88247241 NM_001946 NP_001937 G/T S144A minus 23458622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 12q22-q23 dual specificity phosphatase 6 7455 rs770087 DUSP6 1848 12 88247241 NM_001946 NP_001937 G/T S144A minus 23458622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 12q22-q23 dual specificity phosphatase 6 7456 rs770087 DUSP6 1848 12 88247241 NM_001946 NP_001937 G/T S144A minus 23458622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12q22-q23 dual specificity phosphatase 6 7457 rs773123 ERBB3 2065 12 54781265 NM_001982 NP_001973 A/T S1119C minus 1984870 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 7458 rs773902 F2RL3 9002 19 16861632 NM_003950 NP_003941 A/G A120T plus 1376024 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.39 120 "by doubleHit,freq" 19p12 coagulation factor II (thrombin) receptor-like 3 7459 rs773902 F2RL3 9002 19 16861632 NM_003950 NP_003941 A/G A120T plus 1376024 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.33 120 "by doubleHit,freq" 19p12 coagulation factor II (thrombin) receptor-like 3 7460 rs773902 F2RL3 9002 19 16861632 NM_003950 NP_003941 A/G A120T plus 1376024 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 120 "by doubleHit,freq" 19p12 coagulation factor II (thrombin) receptor-like 3 7461 rs773902 F2RL3 9002 19 16861632 NM_003950 NP_003941 A/G A120T plus 5368442 1303 SEQUENOM CEPH CEPH (92) 92 0.47 120 "by doubleHit,freq" 19p12 coagulation factor II (thrombin) receptor-like 3 7462 rs774027 TIMELESS 8914 12 55108645 NM_003920 NP_003911 A/T I455L plus 1986181 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq" 12q12-q13 timeless homolog (Drosophila) 7463 rs774027 TIMELESS 8914 12 55108645 NM_003920 NP_003911 A/T I455L plus 24456217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 12q12-q13 timeless homolog (Drosophila) 7464 rs774027 TIMELESS 8914 12 55108645 NM_003920 NP_003911 A/T I455L plus 24456217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq" 12q12-q13 timeless homolog (Drosophila) 7465 rs774027 TIMELESS 8914 12 55108645 NM_003920 NP_003911 A/T I455L plus 24456217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq" 12q12-q13 timeless homolog (Drosophila) 7466 rs774047 TIMELESS 8914 12 55102189 NM_003920 NP_003911 C/T R831Q plus 1986172 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 7467 rs774047 TIMELESS 8914 12 55102189 NM_003920 NP_003911 C/T R831Q plus 5003356 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.39 123 "by doubleHit,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 7468 rs774047 TIMELESS 8914 12 55102189 NM_003920 NP_003911 C/T R831Q plus 24456190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 7469 rs774047 TIMELESS 8914 12 55102189 NM_003920 NP_003911 C/T R831Q plus 24456190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 7470 rs774047 TIMELESS 8914 12 55102189 NM_003920 NP_003911 C/T R831Q plus 24456190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by doubleHit,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 7471 rs774895 SLC26A10 65012 12 56305739 NM_133489 NP_597996 A/C L185V minus 23452898 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13 "solute carrier family 26, member 10" 7472 rs774895 SLC26A10 65012 12 56305739 NM_133489 NP_597996 A/C L185V minus 23452898 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 12q13 "solute carrier family 26, member 10" 7473 rs774895 SLC26A10 65012 12 56305739 NM_133489 NP_597996 A/C L185V minus 23452898 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 "by cluster,freq" 12q13 "solute carrier family 26, member 10" 7474 rs774896 GALGT 2583 12 56312080 NM_001478 NP_001469 C/G L35V plus 2019324 1303 SEQUENOM CEPH CEPH (92) 92 0.14 120 "by doubleHit,freq,cluster" 12q13.3 UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T) 7475 rs774896 GALGT 2583 12 56312080 NM_001478 NP_001469 C/G L35V plus 3173134 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.2 120 "by doubleHit,freq,cluster" 12q13.3 UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T) 7476 rs775882 NALP7 199713 19 60143044 NM_139176 NP_631915 C/T V319I plus 23778564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 7" 7477 rs775882 NALP7 199713 19 60143044 NM_139176 NP_631915 C/T V319I plus 23778564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 7" 7478 rs775882 NALP7 199713 19 60143044 NM_139176 NP_631915 C/T V319I plus 23778564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 7" 7479 rs776755 ADAMTSL1 92949 9 18629300 NM_052866 NP_443098 A/G S242N plus 23525956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7480 rs776755 ADAMTSL1 92949 9 18629300 NM_052866 NP_443098 A/G S242N plus 23525956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7481 rs776755 ADAMTSL1 92949 9 18629300 NM_052866 NP_443098 A/G S242N plus 23525956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7482 rs776755 ADAMTSL1 92949 9 18629300 NM_139238 NP_640329 A/G S242N plus 23525956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7483 rs776755 ADAMTSL1 92949 9 18629300 NM_139238 NP_640329 A/G S242N plus 23525956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7484 rs776755 ADAMTSL1 92949 9 18629300 NM_139238 NP_640329 A/G S242N plus 23525956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7485 rs776755 ADAMTSL1 92949 9 18629300 NM_139264 NP_644669 A/G S242N plus 23525956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7486 rs776755 ADAMTSL1 92949 9 18629300 NM_139264 NP_644669 A/G S242N plus 23525956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7487 rs776755 ADAMTSL1 92949 9 18629300 NM_139264 NP_644669 A/G S242N plus 23525956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9p22.1 ADAMTS-like 1 7488 rs778294 G30 282706 13 104940236 XM_498445 XP_498445 A/G G13S minus 5105786 749 GENSET CONTROL French Canadian 482 0.28 121 "by doubleHit,cluster" 13q33.2 putative protein LG30 7489 rs778805 FUT6 2528 19 5783209 NM_000150 NP_000141 C/T P124S minus 24719213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 7490 rs778805 FUT6 2528 19 5783209 NM_000150 NP_000141 C/T P124S minus 24719213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 7491 rs778805 FUT6 2528 19 5783209 NM_000150 NP_000141 C/T P124S minus 24719213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,freq,cluster" 19p13.3 "fucosyltransferase 6 (alpha (1,3) fucosyltransferase)" 7492 rs778970 FUT5 2527 19 5818177 NM_002034 NP_002025 A/G P187L plus 911298 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.29 110 "by cluster,freq" 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 7493 rs778970 FUT5 2527 19 5818177 NM_002034 NP_002025 A/G P187L plus 4931646 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.33 110 "by cluster,freq" 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 7494 rs778984 FUT5 2527 19 5817736 NM_002034 NP_002025 C/T H334R plus 1694744 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 123 "by doubleHit,cluster" 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 7495 rs778984 FUT5 2527 19 5817736 NM_002034 NP_002025 C/T H334R plus 1694744 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 123 "by doubleHit,cluster" 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 7496 rs778984 FUT5 2527 19 5817736 NM_002034 NP_002025 C/T H334R plus 1694744 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "by doubleHit,cluster" 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 7497 rs778986 FUT3 2525 19 5795537 NM_000149 NP_000140 A/G M105T plus 1330957 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "HapMap,freq,cluster" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7498 rs778986 FUT3 2525 19 5795537 NM_000149 NP_000140 A/G M105T plus 1330957 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 1 121 "HapMap,freq,cluster" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7499 rs778986 FUT3 2525 19 5795537 NM_000149 NP_000140 A/G M105T plus 1330957 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 121 "HapMap,freq,cluster" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7500 rs778986 FUT3 2525 19 5795537 NM_000149 NP_000140 A/G M105T plus 3292163 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,freq,cluster" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7501 rs778986 FUT3 2525 19 5795537 NM_000149 NP_000140 A/G M105T plus 3292163 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "HapMap,freq,cluster" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7502 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 1389016 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7503 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 1389016 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7504 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 1389016 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7505 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 1389016 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7506 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 1389016 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7507 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 4926458 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7508 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 16503683 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7509 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 24104722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7510 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 24104722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7511 rs780668 SLC29A3 55315 10 72781414 NM_018344 NP_060814 A/G S158F minus 24104722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 7512 rs781831 ZZEF1 23140 17 3894393 NM_015113 NP_055928 A/G I2014V minus 1570716 1303 SEQUENOM CEPH CEPH (92) 92 0.35 121 "by cluster,freq" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7513 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 1570742 1303 SEQUENOM CEPH CEPH (92) 92 0.18 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7514 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 901 AFFY AfAm 40 0.33 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7515 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 902 AFFY Caucasian 40 0.45 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7516 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 903 AFFY Asian 40 0.25 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7517 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 904 AFFY CEPH 44 0.43 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7518 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 905 AFFY PDpanel 24 0.5 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7519 rs781852 ZZEF1 23140 17 3899851 NM_015113 NP_055928 C/T L1972P minus 2909613 906 AFFY APE 4 1 108 "by doubleHit,freq,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7520 rs781861 ZZEF1 23140 17 3871315 NM_015113 NP_055928 C/T A2421T plus 5265299 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,cluster" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 7521 rs782572 PNPT1 87178 2 55823771 NM_033109 NP_149100 C/T I121V plus 3635716 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq" 2p15 polyribonucleotide nucleotidyltransferase 1 7522 rs783396 AIM1 202 6 107094063 XM_166300 XP_166300 A/C E1819A plus 1615915 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by submitter,freq,cluster" 6q21 absent in melanoma 1 7523 rs783396 AIM1 202 6 107094063 XM_166300 XP_166300 A/C E1819A plus 24360909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq,cluster" 6q21 absent in melanoma 1 7524 rs783396 AIM1 202 6 107094063 XM_166300 XP_166300 A/C E1819A plus 24360909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 6q21 absent in melanoma 1 7525 rs783396 AIM1 202 6 107094063 XM_166300 XP_166300 A/C E1819A plus 24360909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 6q21 absent in melanoma 1 7526 rs783420 AIM1 202 6 107066629 XM_166300 XP_166300 C/G G530A minus 2281838 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq" 6q21 absent in melanoma 1 7527 rs783423 AIM1 202 6 107065437 XM_166300 XP_166300 A/G S311N plus 23324559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 7528 rs783423 AIM1 202 6 107065437 XM_166300 XP_166300 A/G S311N plus 23324559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 7529 rs783423 AIM1 202 6 107065437 XM_166300 XP_166300 A/G S311N plus 23324559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 7530 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 3150046 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7531 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 3150046 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.3 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7532 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 3150046 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7533 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 23980337 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7534 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 23980337 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7535 rs784133 RSHL3 345895 6 117057526 XM_496824 XP_496824 C/T L589P plus 23980337 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6q22.31 radial spokehead-like 3 7536 rs784625 HEYL 26508 1 39767421 NM_014571 NP_055386 A/G H47R minus 938226 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 by freq 1p34.3 hairy/enhancer-of-split related with YRPW motif-like 7537 rs784625 HEYL 26508 1 39767421 NM_014571 NP_055386 A/G H47R minus 938226 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 by freq 1p34.3 hairy/enhancer-of-split related with YRPW motif-like 7538 rs784625 HEYL 26508 1 39767421 NM_014571 NP_055386 A/G H47R minus 1638657 1303 SEQUENOM CEPH CEPH (92) 92 1 121 by freq 1p34.3 hairy/enhancer-of-split related with YRPW motif-like 7539 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 1927292 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7540 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 1927292 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7541 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 3177818 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.24 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7542 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 3211508 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.31 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7543 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 24243577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7544 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 24243577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7545 rs785467 PIK3R3 8503 1 46233579 NM_003629 NP_003620 A/T N283K minus 24243577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 1p34.1 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma)" 7546 rs787795 BMS1L 9790 10 42612653 NM_014753 NP_055568 A/G K652R plus 4926333 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.27 123 "by doubleHit,freq,cluster" 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 7547 rs787795 BMS1L 9790 10 42612653 NM_014753 NP_055568 A/G K652R plus 23569037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 7548 rs787795 BMS1L 9790 10 42612653 NM_014753 NP_055568 A/G K652R plus 23569037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 7549 rs787795 BMS1L 9790 10 42612653 NM_014753 NP_055568 A/G K652R plus 23569037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 7550 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7551 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 901 AFFY AfAm 12 0.17 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7552 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 902 AFFY Caucasian 24 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7553 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 903 AFFY Asian 12 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7554 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 904 AFFY CEPH 12 0.25 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7555 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 905 AFFY PDpanel 46 0.39 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7556 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 2198837 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7557 rs788908 ADAMTS3 9508 4 73779321 NM_014243 NP_055058 A/G R138K minus 3206712 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.26 120 "HapMap,doubleHit,submitter,freq,cluster" 4q21.1 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3" 7558 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 2193078 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.23 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7559 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 2193078 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.08 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7560 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 2193078 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.28 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7561 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 23719790 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7562 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 23719790 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7563 rs794001 N4BP2 55728 4 39944128 NM_018177 NP_060647 A/G D611N plus 23719790 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 4p14 Nedd4 binding protein 2 7564 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 638 TSC-CSHL TSC_42_AA TSC African American (42) 42 0.5 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7565 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.35 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7566 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.2 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7567 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 901 AFFY AfAm 12 0.25 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7568 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 902 AFFY Caucasian 22 0.09 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7569 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 903 AFFY Asian 6 0.5 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7570 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 904 AFFY CEPH 4 0.5 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7571 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 905 AFFY PDpanel 38 0.26 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7572 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 2743238 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7573 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 24173795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7574 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 24173795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7575 rs796287 CRYGB 1419 2 208833065 NM_005210 NP_005201 G/T I111L plus 24173795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 2q33-q35 "crystallin, gamma B" 7576 rs799193 ZNF441 126068 19 11752003 NM_152355 NP_689568 C/T V55I minus 1946630 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 441 7577 rs799193 ZNF441 126068 19 11752003 NM_152355 NP_689568 C/T V55I minus 24545306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 441 7578 rs799193 ZNF441 126068 19 11752003 NM_152355 NP_689568 C/T V55I minus 24545306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 441 7579 rs799193 ZNF441 126068 19 11752003 NM_152355 NP_689568 C/T V55I minus 24545306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 441 7580 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7581 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7582 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7583 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7584 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7585 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7586 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7587 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7588 rs799917 BRCA1 672 17 38498462 NM_007294 NP_009225 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7589 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7590 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7591 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7592 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7593 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7594 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7595 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7596 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7597 rs799917 BRCA1 672 17 38498462 NM_007295 NP_009226 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7598 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7599 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7600 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7601 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7602 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7603 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7604 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7605 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7606 rs799917 BRCA1 672 17 38498462 NM_007296 NP_009227 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7607 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7608 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7609 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7610 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7611 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7612 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7613 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7614 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7615 rs799917 BRCA1 672 17 38498462 NM_007297 NP_009228 C/T P575L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7616 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7617 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7618 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7619 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7620 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7621 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7622 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7623 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7624 rs799917 BRCA1 672 17 38498462 NM_007299 NP_009230 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7625 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7626 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7627 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7628 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7629 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7630 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7631 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7632 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7633 rs799917 BRCA1 672 17 38498462 NM_007300 NP_009231 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7634 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7635 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7636 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7637 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7638 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7639 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7640 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7641 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7642 rs799917 BRCA1 672 17 38498462 NM_007301 NP_009232 C/T P871L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7643 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 2984208 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.36 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7644 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 3176016 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7645 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 4075454 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7646 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 5586283 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.46 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7647 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 5586283 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7648 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 5586283 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7649 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 5586283 777 SNP500CANCER HISP1 Hispanic (23) 38 0.39 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7650 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 5586283 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7651 rs799917 BRCA1 672 17 38498462 NM_007302 NP_009233 C/T P830L minus 8486258 693 EGP_SNPS PDR90 NIHPDR 136 0.43 121 "by doubleHit,freq,cluster" 17q21 "breast cancer 1, early onset" 7652 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 2047304 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7653 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 2047304 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7654 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 5586579 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7655 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 5586579 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7656 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 5586579 776 SNP500CANCER AFR1 African / African-American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7657 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 5586579 777 SNP500CANCER HISP1 Hispanic (23) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7658 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 5586579 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7659 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 23857774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7660 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 23857774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7661 rs800292 HF1 3075 1 193373890 NM_000186 NP_000177 C/T V62I minus 23857774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 1q32 H factor 1 (complement) 7662 rs801720 CERK 64781 22 45402678 NM_182661 NP_872602 G/T E113D minus 4933281 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.38 120 "by doubleHit,freq,cluster" 22q13.31 ceramide kinase 7663 rs801720 CERK 64781 22 45402678 NM_182661 NP_872602 G/T E113D minus 8305886 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,freq,cluster" 22q13.31 ceramide kinase 7664 rs803064 CUTL1 1523 7 101510956 NM_001913 NP_001904 C/T A464T minus 2986141 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.44 123 "by doubleHit,submitter,freq,cluster" 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 7665 rs803064 CUTL1 1523 7 101510956 NM_001913 NP_001904 C/T A464T minus 24802749 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by doubleHit,submitter,freq,cluster" 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 7666 rs803064 CUTL1 1523 7 101510956 NM_181500 NP_852477 C/T A462T minus 2986141 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.44 123 "by doubleHit,submitter,freq,cluster" 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 7667 rs803064 CUTL1 1523 7 101510956 NM_181500 NP_852477 C/T A462T minus 24802749 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by doubleHit,submitter,freq,cluster" 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 7668 rs805267 LY6G5B 58496 6 31747736 NM_021221 NP_067044 C/T D47N minus 1956587 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,freq,cluster" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 7669 rs805267 LY6G5B 58496 6 31747736 NM_021221 NP_067044 C/T D47N minus 23935465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 7670 rs805267 LY6G5B 58496 6 31747736 NM_021221 NP_067044 C/T D47N minus 23935465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 7671 rs805267 LY6G5B 58496 6 31747736 NM_021221 NP_067044 C/T D47N minus 23935465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 7672 rs805295 LY6G6D 58530 6 31783276 NM_021246 NP_067069 A/G P39S minus 1956559 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G6D" 7673 rs805295 LY6G6D 58530 6 31783276 NM_021246 NP_067069 A/G P39S minus 23935636 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G6D" 7674 rs805295 LY6G6D 58530 6 31783276 NM_021246 NP_067069 A/G P39S minus 23935636 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G6D" 7675 rs805295 LY6G6D 58530 6 31783276 NM_021246 NP_067069 A/G P39S minus 23935636 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G6D" 7676 rs805408 PSME4 23198 2 54031676 NM_014614 NP_055429 A/T S1257T plus 1945424 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 7677 rs805408 PSME4 23198 2 54031676 NM_014614 NP_055429 A/T S1257T plus 1945424 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 7678 rs805408 PSME4 23198 2 54031676 NM_014614 NP_055429 A/T S1257T plus 24142558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 7679 rs805408 PSME4 23198 2 54031676 NM_014614 NP_055429 A/T S1257T plus 24142558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 7680 rs805408 PSME4 23198 2 54031676 NM_014614 NP_055429 A/T S1257T plus 24142558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 7681 rs805657 SLK 9748 10 105752581 NM_014720 NP_055535 A/G C552Y plus 1951606 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 7682 rs805657 SLK 9748 10 105752581 NM_014720 NP_055535 A/G C552Y plus 1951606 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 7683 rs805657 SLK 9748 10 105752581 NM_014720 NP_055535 A/G C552Y plus 23510988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 7684 rs805657 SLK 9748 10 105752581 NM_014720 NP_055535 A/G C552Y plus 23510988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 7685 rs805657 SLK 9748 10 105752581 NM_014720 NP_055535 A/G C552Y plus 23510988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 7686 rs805698 COL17A1 1308 10 105806906 NM_000494 NP_000485 C/T G428S plus 16485091 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7687 rs805698 COL17A1 1308 10 105806906 NM_130778 NP_570134 C/T G428S plus 16485091 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7688 rs805708 COL17A1 1308 10 105814323 NM_000494 NP_000485 A/G T210M plus 2766000 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7689 rs805708 COL17A1 1308 10 105814323 NM_000494 NP_000485 A/G T210M plus 3209777 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7690 rs805708 COL17A1 1308 10 105814323 NM_000494 NP_000485 A/G T210M plus 23511935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7691 rs805708 COL17A1 1308 10 105814323 NM_000494 NP_000485 A/G T210M plus 23511935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7692 rs805708 COL17A1 1308 10 105814323 NM_000494 NP_000485 A/G T210M plus 23511935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7693 rs805708 COL17A1 1308 10 105814323 NM_130778 NP_570134 A/G T210M plus 2766000 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7694 rs805708 COL17A1 1308 10 105814323 NM_130778 NP_570134 A/G T210M plus 3209777 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7695 rs805708 COL17A1 1308 10 105814323 NM_130778 NP_570134 A/G T210M plus 23511935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7696 rs805708 COL17A1 1308 10 105814323 NM_130778 NP_570134 A/G T210M plus 23511935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7697 rs805708 COL17A1 1308 10 105814323 NM_130778 NP_570134 A/G T210M plus 23511935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7698 rs805722 COL17A1 1308 10 105800390 NM_000494 NP_000485 C/T M703V plus 23511735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7699 rs805722 COL17A1 1308 10 105800390 NM_000494 NP_000485 C/T M703V plus 23511735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7700 rs805722 COL17A1 1308 10 105800390 NM_000494 NP_000485 C/T M703V plus 23511735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7701 rs805722 COL17A1 1308 10 105800390 NM_130778 NP_570134 C/T M703V plus 23511735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7702 rs805722 COL17A1 1308 10 105800390 NM_130778 NP_570134 C/T M703V plus 23511735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7703 rs805722 COL17A1 1308 10 105800390 NM_130778 NP_570134 C/T M703V plus 23511735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q24.3 "collagen, type XVII, alpha 1" 7704 rs807037 KAZALD1 81621 10 102814339 NM_030929 NP_112191 C/G G255A minus 1952099 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.34 123 "HapMap,doubleHit,freq,cluster" 10q24.32 Kazal-type serine protease inhibitor domain 1 7705 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 2628936 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7706 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 2628936 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7707 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 2628936 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7708 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 2628936 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.18 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7709 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 2628936 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7710 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 24653917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7711 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 24653917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7712 rs811925 PRDM1 639 6 106654065 NM_001198 NP_001189 C/G D167E minus 24653917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7713 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 2628936 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7714 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 2628936 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7715 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 2628936 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7716 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 2628936 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.18 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7717 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 2628936 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7718 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 24653917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7719 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 24653917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7720 rs811925 PRDM1 639 6 106654065 NM_182907 NP_878911 C/G D69E minus 24653917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 6q21-q22.1 "PR domain containing 1, with ZNF domain" 7721 rs812936 FUT3 2525 19 5795649 NM_000149 NP_000140 A/G R68W plus 1754958 771 TSC-CSHL SC_12_A CORIELL Asian (12) 14 1 123 "by cluster,freq" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7722 rs812936 FUT3 2525 19 5795649 NM_000149 NP_000140 A/G R68W plus 24600881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7723 rs812936 FUT3 2525 19 5795649 NM_000149 NP_000140 A/G R68W plus 24600881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7724 rs812936 FUT3 2525 19 5795649 NM_000149 NP_000140 A/G R68W plus 24600881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 7725 rs814501 SPTBN4 57731 19 45730414 NM_020971 NP_066022 A/G G1331S plus 1583922 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 19q13.13 "spectrin, beta, non-erythrocytic 4" 7726 rs814501 SPTBN4 57731 19 45730414 NM_025213 NP_079489 A/G G1326S plus 1583922 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 19q13.13 "spectrin, beta, non-erythrocytic 4" 7727 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 1764627 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7728 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 1764627 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7729 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 3211601 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7730 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 24081117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7731 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 24081117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7732 rs814628 LIPF 8513 10 90419632 NM_004190 NP_004181 A/G T161A plus 24081117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.31 "lipase, gastric" 7733 rs816142 UGCGL2 55757 13 95436637 NM_020121 NP_064506 G/T S328A minus 2607098 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.08 121 "HapMap,doubleHit,freq" 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 7734 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 2630756 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7735 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 2630756 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7736 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 2630756 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7737 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 2630756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7738 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 2630756 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7739 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 4936557 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.1 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7740 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 24505382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7741 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 24505382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7742 rs818711 BSPRY 54836 9 113211646 NM_017688 NP_060158 C/G Q192H plus 24505382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 9q33.1 B-box and SPRY domain containing 7743 rs818817 SLC22A14 9389 3 38325547 NM_004803 NP_004794 C/T S292G minus 1801889 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 7744 rs818818 SLC22A14 9389 3 38325523 NM_004803 NP_004794 C/T V284M minus 1801890 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by cluster,freq" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 7745 rs820196 RECQL5 9400 17 71139134 NM_004259 NP_004250 C/T D480G plus 1802369 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 17q25.2-q25.3 RecQ protein-like 5 7746 rs820196 RECQL5 9400 17 71139134 NM_004259 NP_004250 C/T D480G plus 24098205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 17q25.2-q25.3 RecQ protein-like 5 7747 rs820196 RECQL5 9400 17 71139134 NM_004259 NP_004250 C/T D480G plus 24098205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 17q25.2-q25.3 RecQ protein-like 5 7748 rs820196 RECQL5 9400 17 71139134 NM_004259 NP_004250 C/T D480G plus 24098205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 17q25.2-q25.3 RecQ protein-like 5 7749 rs820878 HEXB 3074 5 74017026 NM_000521 NP_000512 C/T L62S plus 1579135 1303 SEQUENOM CEPH CEPH (92) 92 1 121 by doubleHit 5q13 hexosaminidase B (beta polypeptide) 7750 rs821616 DISC1 27185 1 228451333 NM_018662 NP_061132 A/T S704C minus 1620253 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42.1 disrupted in schizophrenia 1 7751 rs821616 DISC1 27185 1 228451333 NM_018662 NP_061132 A/T S704C minus 3242782 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.1 123 "by doubleHit,submitter,freq,cluster" 1q42.1 disrupted in schizophrenia 1 7752 rs821616 DISC1 27185 1 228451333 NM_018662 NP_061132 A/T S704C minus 23244961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42.1 disrupted in schizophrenia 1 7753 rs821616 DISC1 27185 1 228451333 NM_018662 NP_061132 A/T S704C minus 23244961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 1q42.1 disrupted in schizophrenia 1 7754 rs821616 DISC1 27185 1 228451333 NM_018662 NP_061132 A/T S704C minus 23244961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 1q42.1 disrupted in schizophrenia 1 7755 rs827528 FZD6 8323 8 104381608 NM_003506 NP_003497 A/G M33V plus 1989018 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 119 "HapMap,doubleHit,submitter,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 7756 rs827528 FZD6 8323 8 104381608 NM_003506 NP_003497 A/G M33V plus 1989018 1303 SEQUENOM CEPH CEPH (92) 92 0.21 119 "HapMap,doubleHit,submitter,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 7757 rs831510 FGD2 221472 6 37084615 NM_173558 NP_775829 C/G Q32H plus 1800294 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,freq,cluster" 6p21.31 "FGD1 family, member 2" 7758 rs831510 FGD2 221472 6 37084615 NM_173558 NP_775829 C/G Q32H plus 23337393 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 6p21.31 "FGD1 family, member 2" 7759 rs831510 FGD2 221472 6 37084615 NM_173558 NP_775829 C/G Q32H plus 23337393 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 6p21.31 "FGD1 family, member 2" 7760 rs831510 FGD2 221472 6 37084615 NM_173558 NP_775829 C/G Q32H plus 23337393 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 6p21.31 "FGD1 family, member 2" 7761 rs832582 MAP3K1 4214 5 56213500 XM_042066 XP_042066 A/G V1040I plus 1317910 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "by submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 7762 rs832582 MAP3K1 4214 5 56213500 XM_042066 XP_042066 A/G V1040I plus 23955529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 7763 rs832582 MAP3K1 4214 5 56213500 XM_042066 XP_042066 A/G V1040I plus 23955529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 7764 rs832582 MAP3K1 4214 5 56213500 XM_042066 XP_042066 A/G V1040I plus 23955529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 5q11.2 mitogen-activated protein kinase kinase kinase 1 7765 rs838827 IKBKAP 8518 9 108748207 NM_003640 NP_003631 C/T R525Q plus 1666273 1303 SEQUENOM CEPH CEPH (92) 92 0.03 120 by doubleHit 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 7766 rs838827 IKBKAP 8518 9 108748207 NM_003640 NP_003631 C/T R525Q plus 3177966 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.02 120 by doubleHit 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 7767 rs843358 EIF2B5 8893 3 185343945 NM_003907 NP_003898 C/T I587V minus 2545226 1303 SEQUENOM CEPH CEPH (92) 92 0.26 121 "by doubleHit,freq,cluster" 3q27.3 "eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa" 7768 rs843358 EIF2B5 8893 3 185343945 NM_003907 NP_003898 C/T I587V minus 5003278 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.45 121 "by doubleHit,freq,cluster" 3q27.3 "eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa" 7769 rs843971 PGLYRP3 114771 1 150090496 NM_052891 NP_443123 A/G G126S minus 2038605 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1q21 peptidoglycan recognition protein 3 7770 rs843971 PGLYRP3 114771 1 150090496 NM_052891 NP_443123 A/G G126S minus 23872783 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 1q21 peptidoglycan recognition protein 3 7771 rs843971 PGLYRP3 114771 1 150090496 NM_052891 NP_443123 A/G G126S minus 23872783 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 1q21 peptidoglycan recognition protein 3 7772 rs843971 PGLYRP3 114771 1 150090496 NM_052891 NP_443123 A/G G126S minus 23872783 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1q21 peptidoglycan recognition protein 3 7773 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 1403663 638 TSC-CSHL TSC_42_AA TSC African American (42) 80 0.11 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7774 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 1403663 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.45 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7775 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 1403663 640 TSC-CSHL TSC_42_A TSC Asian (42) 80 0.36 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7776 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 1403663 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.47 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7777 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 1403663 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7778 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 24195653 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7779 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 24195653 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7780 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 24195653 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7781 rs846266 GLI3 2737 7 41861462 NM_000168 NP_000159 A/G T183A minus 24810597 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 7782 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7783 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 901 AFFY AfAm 10 1 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7784 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 902 AFFY Caucasian 20 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7785 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 903 AFFY Asian 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7786 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 904 AFFY CEPH 10 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7787 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 905 AFFY PDpanel 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7788 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 1941522 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7789 rs848208 SHARP 23013 1 16000950 NM_015001 NP_055816 C/T A970V plus 24801763 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7790 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 2579950 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.41 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7791 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 2579950 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.17 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7792 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 2579950 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7793 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 24240759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7794 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 24240759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.06 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7795 rs848209 SHARP 23013 1 16001313 NM_015001 NP_055816 C/T L1091P plus 24240759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by doubleHit,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7796 rs848210 SHARP 23013 1 16005119 NM_015001 NP_055816 A/G N2360D plus 1941524 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7797 rs848210 SHARP 23013 1 16005119 NM_015001 NP_055816 A/G N2360D plus 1941524 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "HapMap,submitter,freq,cluster" 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 7798 rs849541 NRP2 8828 2 206406539 NM_003872 NP_003863 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7799 rs849541 NRP2 8828 2 206406539 NM_018534 NP_061004 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7800 rs849541 NRP2 8828 2 206406539 NM_201264 NP_957716 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7801 rs849541 NRP2 8828 2 206406539 NM_201266 NP_957718 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7802 rs849541 NRP2 8828 2 206406539 NM_201267 NP_957719 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7803 rs849541 NRP2 8828 2 206406539 NM_201279 NP_958436 C/T R123K minus 1738381 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 2q33.3 neuropilin 2 7804 rs850763 SLC5A9 200010 1 48420248 XM_117174 XP_117174 A/C E593X minus 24631533 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by submitter,freq" 1p33 "solute carrier family 5 (sodium/glucose cotransporter), member 9" 7805 rs850763 SLC5A9 200010 1 48420248 XM_117174 XP_117174 A/C E593X minus 24631533 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "by submitter,freq" 1p33 "solute carrier family 5 (sodium/glucose cotransporter), member 9" 7806 rs850763 SLC5A9 200010 1 48420248 XM_117174 XP_117174 A/C E593X minus 24631533 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 1p33 "solute carrier family 5 (sodium/glucose cotransporter), member 9" 7807 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 1992023 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7808 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 1992023 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7809 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 2514011 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7810 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 2514011 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.2 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7811 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 2514011 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7812 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 23789869 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7813 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 23789869 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7814 rs850932 RAI3 9052 12 12952802 NM_003979 NP_003970 C/T S118G minus 23789869 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.3 retinoic acid induced 3 7815 rs853678 ZNF323 64288 6 28405292 NM_145909 NP_665916 A/T T50S minus 3208052 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.18 123 "by doubleHit,submitter,freq,cluster" 6p21.31 zinc finger protein 323 7816 rs853678 ZNF323 64288 6 28405292 NM_145909 NP_665916 A/T T50S minus 17877537 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,submitter,freq,cluster" 6p21.31 zinc finger protein 323 7817 rs853678 ZNF323 64288 6 28405292 NM_145909 NP_665916 A/T T50S minus 23290944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by doubleHit,submitter,freq,cluster" 6p21.31 zinc finger protein 323 7818 rs853678 ZNF323 64288 6 28405292 NM_145909 NP_665916 A/T T50S minus 23290944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 6p21.31 zinc finger protein 323 7819 rs853678 ZNF323 64288 6 28405292 NM_145909 NP_665916 A/T T50S minus 23290944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 6p21.31 zinc finger protein 323 7820 rs853684 ZNF323 64288 6 28402529 NM_030899 NP_112161 A/G K8R minus 6494703 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7821 rs853684 ZNF323 64288 6 28402529 NM_030899 NP_112161 A/G K8R minus 23916214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7822 rs853684 ZNF323 64288 6 28402529 NM_030899 NP_112161 A/G K8R minus 23916214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7823 rs853684 ZNF323 64288 6 28402529 NM_030899 NP_112161 A/G K8R minus 23916214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7824 rs853684 ZNF323 64288 6 28402529 NM_145909 NP_665916 A/G K205R minus 6494703 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7825 rs853684 ZNF323 64288 6 28402529 NM_145909 NP_665916 A/G K205R minus 23916214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7826 rs853684 ZNF323 64288 6 28402529 NM_145909 NP_665916 A/G K205R minus 23916214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7827 rs853684 ZNF323 64288 6 28402529 NM_145909 NP_665916 A/G K205R minus 23916214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6p21.31 zinc finger protein 323 7828 rs854524 PPP1R9A 55607 7 94543462 XM_371933 XP_371933 A/G R1017Q plus 1847017 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 7829 rs854524 PPP1R9A 55607 7 94543462 XM_371933 XP_371933 A/G R1017Q plus 24194066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 7830 rs854524 PPP1R9A 55607 7 94543462 XM_371933 XP_371933 A/G R1017Q plus 24194066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 7831 rs854524 PPP1R9A 55607 7 94543462 XM_371933 XP_371933 A/G R1017Q plus 24194066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 7832 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 1957760 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7833 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 2556749 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7834 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 2556749 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7835 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 2556749 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7836 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 2556749 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7837 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 23664526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7838 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 23664526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7839 rs854625 CCL14-CCL15 348249 17 31352574 NM_004167 NP_004158 A/G I24T plus 23664526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7840 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 1957760 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7841 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 2556749 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7842 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 2556749 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7843 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 2556749 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7844 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 2556749 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7845 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 23664526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7846 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 23664526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7847 rs854625 CCL14-CCL15 348249 17 31352574 NM_032964 NP_116740 A/G I24T plus 23664526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 7848 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 1957760 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7849 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 2556749 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7850 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 2556749 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7851 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 2556749 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7852 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 2556749 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7853 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 23664526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7854 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 23664526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7855 rs854625 CCL15 6359 17 31352574 NM_032965 NP_116741 A/G I24T plus 23664526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 15 7856 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 1960952 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.23 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7857 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 1960952 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7858 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 3207731 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.4 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7859 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 24125274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7860 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 24125274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7861 rs854777 MYO15A 51168 17 17987623 NM_016239 NP_057323 A/G C1977R minus 24125274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 "HapMap,freq,cluster" 17p11.2 myosin XVA 7862 rs855314 PGM1 5236 1 63807132 NM_002633 NP_002624 C/T I88V minus 2583793 901 AFFY AfAm 12 0.17 116 "by doubleHit,submitter,freq,cluster" 1p31 phosphoglucomutase 1 7863 rs855314 PGM1 5236 1 63807132 NM_002633 NP_002624 C/T I88V minus 2583793 902 AFFY Caucasian 24 0.08 116 "by doubleHit,submitter,freq,cluster" 1p31 phosphoglucomutase 1 7864 rs855314 PGM1 5236 1 63807132 NM_002633 NP_002624 C/T I88V minus 2583793 903 AFFY Asian 12 0.08 116 "by doubleHit,submitter,freq,cluster" 1p31 phosphoglucomutase 1 7865 rs855314 PGM1 5236 1 63807132 NM_002633 NP_002624 C/T I88V minus 2583793 904 AFFY CEPH 12 0.17 116 "by doubleHit,submitter,freq,cluster" 1p31 phosphoglucomutase 1 7866 rs855314 PGM1 5236 1 63807132 NM_002633 NP_002624 C/T I88V minus 2583793 905 AFFY PDpanel 38 0.11 116 "by doubleHit,submitter,freq,cluster" 1p31 phosphoglucomutase 1 7867 rs855791 TMPRSS6 164656 22 35787436 NM_153609 NP_705837 C/T V736A minus 24601298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 7868 rs855791 TMPRSS6 164656 22 35787436 NM_153609 NP_705837 C/T V736A minus 24601298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 7869 rs855791 TMPRSS6 164656 22 35787436 NM_153609 NP_705837 C/T V736A minus 24601298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 7870 rs857824 OR6N1 128372 1 155548668 XM_060957 XP_060957 C/T R293H plus 1827968 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7871 rs857824 OR6N1 128372 1 155548668 XM_060957 XP_060957 C/T R293H plus 23214670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7872 rs857824 OR6N1 128372 1 155548668 XM_060957 XP_060957 C/T R293H plus 23214670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7873 rs857824 OR6N1 128372 1 155548668 XM_060957 XP_060957 C/T R293H plus 23214670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7874 rs857825 OR6N1 128372 1 155548764 XM_060957 XP_060957 C/T Q261R plus 1827969 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7875 rs857825 OR6N1 128372 1 155548764 XM_060957 XP_060957 C/T Q261R plus 24284117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7876 rs857825 OR6N1 128372 1 155548764 XM_060957 XP_060957 C/T Q261R plus 24284117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7877 rs857825 OR6N1 128372 1 155548764 XM_060957 XP_060957 C/T Q261R plus 24284117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7878 rs857827 OR6N1 128372 1 155548965 XM_060957 XP_060957 A/G I194T plus 1827971 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7879 rs857827 OR6N1 128372 1 155548965 XM_060957 XP_060957 A/G I194T plus 24284139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7880 rs857827 OR6N1 128372 1 155548965 XM_060957 XP_060957 A/G I194T plus 24284139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7881 rs857827 OR6N1 128372 1 155548965 XM_060957 XP_060957 A/G I194T plus 24284139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 7882 rs859208 AKR7A2 8574 1 19380270 NM_003689 NP_003680 C/G Q157H minus 2040464 1303 SEQUENOM CEPH CEPH (92) 92 1 89 by doubleHit 1p35.1-p36.23 "aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)" 7883 rs859210 AKR7A2 8574 1 19380011 NM_003689 NP_003680 A/G E180K minus 2040466 1303 SEQUENOM CEPH CEPH (92) 92 0.05 98 by freq 1p35.1-p36.23 "aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)" 7884 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 1259484 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7885 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 1259484 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7886 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 1259484 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 2 1 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7887 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 1259484 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 192 0.4 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7888 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 3173031 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.33 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7889 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 24632919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7890 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 24632919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7891 rs859398 TNR 7143 1 172107459 NM_003285 NP_003276 A/G I17V minus 24632919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7892 rs859427 TNR 7143 1 172080380 NM_003285 NP_003276 C/T R643K plus 1259517 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 121 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7893 rs859427 TNR 7143 1 172080380 NM_003285 NP_003276 C/T R643K plus 1259517 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.44 121 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7894 rs859427 TNR 7143 1 172080380 NM_003285 NP_003276 C/T R643K plus 1259517 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 121 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7895 rs859427 TNR 7143 1 172080380 NM_003285 NP_003276 C/T R643K plus 1259517 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.33 121 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 7896 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 1719048 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.37 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7897 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 1719048 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.35 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7898 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 1719048 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.15 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7899 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 4472483 693 EGP_SNPS PDR90 NIHPDR 180 0.22 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7900 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 4472483 1303 SEQUENOM CEPH CEPH (92) 92 0.35 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7901 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 5586983 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.22 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7902 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 5586983 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.45 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7903 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 5586983 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7904 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 5586983 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7905 rs861539 XRCC3 7517 14 103235506 NM_005432 NP_005423 C/T T241M minus 5586983 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.07 119 "by cluster,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 7906 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 1852720 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7907 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 1852720 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7908 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 4932247 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.18 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7909 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 24075088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7910 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 24075088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7911 rs862708 ZNF304 57343 19 62559411 NM_020657 NP_065708 C/T L121P plus 24075088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 19q13.4 zinc finger protein 304 7912 rs862709 ZNF304 57343 19 62560148 NM_020657 NP_065708 A/G K367E plus 1852721 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "by cluster,freq" 19q13.4 zinc finger protein 304 7913 rs862709 ZNF304 57343 19 62560148 NM_020657 NP_065708 A/G K367E plus 1852721 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "by cluster,freq" 19q13.4 zinc finger protein 304 7914 rs862709 ZNF304 57343 19 62560148 NM_020657 NP_065708 A/G K367E plus 1852721 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.08 121 "by cluster,freq" 19q13.4 zinc finger protein 304 7915 rs862709 ZNF304 57343 19 62560148 NM_020657 NP_065708 A/G K367E plus 1852721 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.04 121 "by cluster,freq" 19q13.4 zinc finger protein 304 7916 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 3088995 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.28 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7917 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 3088995 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.44 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7918 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 3088995 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.37 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7919 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 24281537 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7920 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 24281537 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7921 rs863362 OR10X1 128367 1 155362565 XM_060952 XP_060952 C/T W82X plus 24281537 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7922 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 3267253 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.24 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7923 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 3267253 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.41 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7924 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 3267253 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.42 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7925 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 24281549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7926 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 24281549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7927 rs863363 OR10X1 128367 1 155362584 XM_060952 XP_060952 A/G I76T plus 24281549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q23.1 "olfactory receptor, family 10, subfamily X, member 1" 7928 rs866484 IFI16 3428 1 155799550 NM_005531 NP_005522 C/G S179T minus 1290164 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 7929 rs866484 IFI16 3428 1 155799550 NM_005531 NP_005522 C/G S179T minus 1290164 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 7930 rs866484 IFI16 3428 1 155799550 NM_005531 NP_005522 C/G S179T minus 1290164 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.17 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 7931 rs866484 IFI16 3428 1 155799550 NM_005531 NP_005522 C/G S179T minus 1290164 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.2 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 7932 rs866484 IFI16 3428 1 155799550 NM_005531 NP_005522 C/G S179T minus 1290164 1303 SEQUENOM CEPH CEPH (92) 92 0.15 120 "by doubleHit,freq,cluster" 1q22 "interferon, gamma-inducible protein 16" 7933 rs867168 ZNF554 115196 19 2784802 NM_152303 NP_689516 C/T E139G minus 1288955 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq" 19p13.3 zinc finger protein 554 7934 rs867168 ZNF554 115196 19 2784802 NM_152303 NP_689516 C/T E139G minus 24190893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq" 19p13.3 zinc finger protein 554 7935 rs867168 ZNF554 115196 19 2784802 NM_152303 NP_689516 C/T E139G minus 24190893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 19p13.3 zinc finger protein 554 7936 rs867168 ZNF554 115196 19 2784802 NM_152303 NP_689516 C/T E139G minus 24190893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq" 19p13.3 zinc finger protein 554 7937 rs867169 ZNF554 115196 19 2784864 NM_152303 NP_689516 C/T V160I minus 1288956 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq" 19p13.3 zinc finger protein 554 7938 rs867169 ZNF554 115196 19 2784864 NM_152303 NP_689516 C/T V160I minus 24190895 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq" 19p13.3 zinc finger protein 554 7939 rs867169 ZNF554 115196 19 2784864 NM_152303 NP_689516 C/T V160I minus 24190895 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq" 19p13.3 zinc finger protein 554 7940 rs867169 ZNF554 115196 19 2784864 NM_152303 NP_689516 C/T V160I minus 24190895 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq" 19p13.3 zinc finger protein 554 7941 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 2982093 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7942 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 2982093 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.18 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7943 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 8375245 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7944 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 24537849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7945 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 24537849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7946 rs867186 PROCR 10544 20 33228215 NM_006404 NP_006395 A/G S219G plus 24537849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq" 20q11.2 "protein C receptor, endothelial (EPCR)" 7947 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 1289025 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7948 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 1289025 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7949 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 2984096 738 YUSUKE JBIC-ALLELE Japanese (752) 720 0.27 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7950 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 24198505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7951 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 24198505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7952 rs867228 FPR1 2357 19 56941023 NM_002029 NP_002020 A/C E346A minus 24198505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 7953 rs868302 SRL 6345 16 4197687 XM_064152 XP_064152 A/G F181L plus 23379579 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 16p13.3 sarcalumenin 7954 rs868302 SRL 6345 16 4197687 XM_064152 XP_064152 A/G F181L plus 23379579 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 16p13.3 sarcalumenin 7955 rs868302 SRL 6345 16 4197687 XM_064152 XP_064152 A/G F181L plus 23379579 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 16p13.3 sarcalumenin 7956 rs868333 DSC2 1824 18 26935901 NM_004949 NP_004940 C/T N11S plus 1290366 1303 SEQUENOM CEPH CEPH (92) 92 0.11 86 "by doubleHit,freq" 18q12.1 desmocollin 2 7957 rs868333 DSC2 1824 18 26935901 NM_024422 NP_077740 C/T N11S plus 1290366 1303 SEQUENOM CEPH CEPH (92) 92 0.11 86 "by doubleHit,freq" 18q12.1 desmocollin 2 7958 rs868511 SRL 6345 16 4196464 XM_064152 XP_064152 A/G S449G minus 1290601 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 sarcalumenin 7959 rs868511 SRL 6345 16 4196464 XM_064152 XP_064152 A/G S449G minus 23379546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 sarcalumenin 7960 rs868511 SRL 6345 16 4196464 XM_064152 XP_064152 A/G S449G minus 23379546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 sarcalumenin 7961 rs868511 SRL 6345 16 4196464 XM_064152 XP_064152 A/G S449G minus 23379546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 sarcalumenin 7962 rs868738 NRAP 4892 10 115371737 NM_006175 NP_006166 C/T R849C minus 1290895 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7963 rs868738 NRAP 4892 10 115371737 NM_006175 NP_006166 C/T R849C minus 24593647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7964 rs868738 NRAP 4892 10 115371737 NM_006175 NP_006166 C/T R849C minus 24593647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7965 rs868738 NRAP 4892 10 115371737 NM_006175 NP_006166 C/T R849C minus 24593647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7966 rs868738 NRAP 4892 10 115371737 NM_198060 NP_932326 C/T R884C minus 1290895 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7967 rs868738 NRAP 4892 10 115371737 NM_198060 NP_932326 C/T R884C minus 24593647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7968 rs868738 NRAP 4892 10 115371737 NM_198060 NP_932326 C/T R884C minus 24593647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7969 rs868738 NRAP 4892 10 115371737 NM_198060 NP_932326 C/T R884C minus 24593647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 7970 rs868749 CHAT 1103 10 50503668 NM_020549 NP_065574 C/T P299L plus 1290907 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 10q11.2 choline acetyltransferase 7971 rs868749 CHAT 1103 10 50503668 NM_020984 NP_066264 C/T P181L plus 1290907 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 10q11.2 choline acetyltransferase 7972 rs868749 CHAT 1103 10 50503668 NM_020985 NP_066265 C/T P181L plus 1290907 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 10q11.2 choline acetyltransferase 7973 rs868749 CHAT 1103 10 50503668 NM_020986 NP_066266 C/T P181L plus 1290907 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 10q11.2 choline acetyltransferase 7974 rs869111 OR2G3 81469 1 244078408 XM_377633 XP_377633 A/G R234G plus 24325777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 7975 rs869111 OR2G3 81469 1 244078408 XM_377633 XP_377633 A/G R234G plus 24325777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 7976 rs869111 OR2G3 81469 1 244078408 XM_377633 XP_377633 A/G R234G plus 24325777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 7977 rs869370 AZI1 22994 17 76779766 XM_045581 XP_045581 A/G R971W plus 24595362 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.45 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 7978 rs869370 AZI1 22994 17 76779766 XM_045581 XP_045581 A/G R971W plus 24595362 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 7979 rs869370 AZI1 22994 17 76779766 XM_045581 XP_045581 A/G R971W plus 24595362 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 7980 rs869457 LAMC3 10319 9 130954005 NM_006059 NP_006050 A/G P522S minus 1291793 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.37 120 "by doubleHit,freq,cluster" 9q31-q34 "laminin, gamma 3" 7981 rs869457 LAMC3 10319 9 130954005 NM_006059 NP_006050 A/G P522S minus 1291793 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.17 120 "by doubleHit,freq,cluster" 9q31-q34 "laminin, gamma 3" 7982 rs869457 LAMC3 10319 9 130954005 NM_006059 NP_006050 A/G P522S minus 1291793 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 "by doubleHit,freq,cluster" 9q31-q34 "laminin, gamma 3" 7983 rs869457 LAMC3 10319 9 130954005 NM_006059 NP_006050 A/G P522S minus 3211139 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 120 "by doubleHit,freq,cluster" 9q31-q34 "laminin, gamma 3" 7984 rs870124 PRDM16 63976 1 3351515 NM_022114 NP_071397 A/G S533P minus 1292688 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.06 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7985 rs870124 PRDM16 63976 1 3351515 NM_022114 NP_071397 A/G S533P minus 1292688 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.18 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7986 rs870124 PRDM16 63976 1 3351515 NM_022114 NP_071397 A/G S533P minus 1292688 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7987 rs870124 PRDM16 63976 1 3351515 NM_022114 NP_071397 A/G S533P minus 1292688 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7988 rs870124 PRDM16 63976 1 3351515 NM_199454 NP_955533 A/G S533P minus 1292688 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.06 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7989 rs870124 PRDM16 63976 1 3351515 NM_199454 NP_955533 A/G S533P minus 1292688 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.18 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7990 rs870124 PRDM16 63976 1 3351515 NM_199454 NP_955533 A/G S533P minus 1292688 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7991 rs870124 PRDM16 63976 1 3351515 NM_199454 NP_955533 A/G S533P minus 1292688 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq,cluster" 1p36.23-p33 PR domain containing 16 7992 rs870849 LAG3 3902 12 6757281 NM_002286 NP_002277 C/T I455T plus 1293768 1303 SEQUENOM CEPH CEPH (92) 92 0.48 120 "by doubleHit,freq" 12p13.32 lymphocyte-activation gene 3 7993 rs870957 RASSF4 83937 10 44798098 NM_032023 NP_114412 A/G R88G plus 3210820 738 YUSUKE JBIC-ALLELE Japanese (752) 1100 0.28 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7994 rs870957 RASSF4 83937 10 44798098 NM_032023 NP_114412 A/G R88G plus 24091176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7995 rs870957 RASSF4 83937 10 44798098 NM_032023 NP_114412 A/G R88G plus 24091176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7996 rs870957 RASSF4 83937 10 44798098 NM_032023 NP_114412 A/G R88G plus 24091176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7997 rs870957 RASSF4 83937 10 44798098 NM_178145 NP_835281 A/G R88G plus 3210820 738 YUSUKE JBIC-ALLELE Japanese (752) 1100 0.28 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7998 rs870957 RASSF4 83937 10 44798098 NM_178145 NP_835281 A/G R88G plus 24091176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 7999 rs870957 RASSF4 83937 10 44798098 NM_178145 NP_835281 A/G R88G plus 24091176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 8000 rs870957 RASSF4 83937 10 44798098 NM_178145 NP_835281 A/G R88G plus 24091176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 10q11.21 Ras association (RalGDS/AF-6) domain family 4 8001 rs871443 ITGB4 3691 17 71265098 NM_000213 NP_000204 C/T L1779P plus 1294606 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "by doubleHit,freq,cluster" 17q11-qter "integrin, beta 4" 8002 rs871545 ZNF295 49854 21 42286720 NM_020727 NP_065778 A/G N185S minus 1294761 1303 SEQUENOM CEPH CEPH (92) 92 0.16 111 by freq 21q22.3 zinc finger protein 295 8003 rs871546 ZNF295 49854 21 42286622 NM_020727 NP_065778 A/C K218Q minus 1294762 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 21q22.3 zinc finger protein 295 8004 rs871546 ZNF295 49854 21 42286622 NM_020727 NP_065778 A/C K218Q minus 24605064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 21q22.3 zinc finger protein 295 8005 rs871546 ZNF295 49854 21 42286622 NM_020727 NP_065778 A/C K218Q minus 24605064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.3 zinc finger protein 295 8006 rs871546 ZNF295 49854 21 42286622 NM_020727 NP_065778 A/C K218Q minus 24605064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 21q22.3 zinc finger protein 295 8007 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 1295155 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.34 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8008 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 1295155 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 76 0.46 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8009 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 1295155 640 TSC-CSHL TSC_42_A TSC Asian (42) 74 0.26 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8010 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 1295155 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8011 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 5002059 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.19 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8012 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 24700065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8013 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 24700065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8014 rs871841 ARHGEF15 22899 17 8157193 NM_173728 NP_776089 A/G L277P minus 24700065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 8015 rs871990 ZBTB4 57659 17 7307375 NM_020899 NP_065950 C/G M550I plus 1295338 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 121 "HapMap,doubleHit,freq,cluster" 17p13.2 zinc finger and BTB domain containing 4 8016 rs871990 ZBTB4 57659 17 7307375 NM_020899 NP_065950 C/G M550I plus 1295338 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,freq,cluster" 17p13.2 zinc finger and BTB domain containing 4 8017 rs871990 ZBTB4 57659 17 7307375 NM_020899 NP_065950 C/G M550I plus 4930554 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.22 121 "HapMap,doubleHit,freq,cluster" 17p13.2 zinc finger and BTB domain containing 4 8018 rs874100 SCARF2 91179 22 19104376 NM_153334 NP_699165 C/G A819G minus 1298138 1303 SEQUENOM CEPH CEPH (92) 92 0.32 86 by freq 22q11.21 "scavenger receptor class F, member 2" 8019 rs874100 SCARF2 91179 22 19104376 NM_182895 NP_878315 C/G A814G minus 1298138 1303 SEQUENOM CEPH CEPH (92) 92 0.32 86 by freq 22q11.21 "scavenger receptor class F, member 2" 8020 rs874101 SCARF2 91179 22 19104322 NM_153334 NP_699165 C/G A837G minus 1298139 1303 SEQUENOM CEPH CEPH (92) 91 0.41 121 "by doubleHit,freq" 22q11.21 "scavenger receptor class F, member 2" 8021 rs874101 SCARF2 91179 22 19104322 NM_182895 NP_878315 C/G A832G minus 1298139 1303 SEQUENOM CEPH CEPH (92) 91 0.41 121 "by doubleHit,freq" 22q11.21 "scavenger receptor class F, member 2" 8022 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 901 AFFY AfAm 6 0.5 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8023 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 902 AFFY Caucasian 22 0.45 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8024 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8025 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 904 AFFY CEPH 12 0.33 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8026 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 905 AFFY PDpanel 46 0.48 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8027 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 1299055 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8028 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 24370109 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8029 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 24370109 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8030 rs874808 DNAH8 1769 6 38881271 NM_001371 NP_001362 C/T G807E minus 24370109 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 8031 rs874868 KBTBD9 114818 2 23709731 XM_496546 XP_496546 G/T G3068V plus 23172634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 8032 rs874868 KBTBD9 114818 2 23709731 XM_496546 XP_496546 G/T G3068V plus 23172634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 8033 rs874868 KBTBD9 114818 2 23709731 XM_496546 XP_496546 G/T G3068V plus 23172634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 8034 rs874881 PADI4 23569 1 17405805 NM_012387 NP_036519 C/G G112A plus 4923762 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.41 108 "by doubleHit,freq,cluster" 1p36.13 "peptidyl arginine deiminase, type IV" 8035 rs874889 KRT24 192666 17 36110972 NM_019016 NP_061889 G/T M267I minus 10854013 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 8036 rs874889 KRT24 192666 17 36110972 NM_019016 NP_061889 G/T M267I minus 10854013 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 8037 rs874889 KRT24 192666 17 36110972 NM_019016 NP_061889 G/T M267I minus 24584008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 8038 rs874889 KRT24 192666 17 36110972 NM_019016 NP_061889 G/T M267I minus 24584008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 8039 rs874889 KRT24 192666 17 36110972 NM_019016 NP_061889 G/T M267I minus 24584008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 8040 rs875379 LAMA5 3911 20 60335381 NM_005560 NP_005551 A/G H1717Y plus 1299815 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 123 "HapMap,freq" 20q13.2-q13.3 "laminin, alpha 5" 8041 rs875379 LAMA5 3911 20 60335381 NM_005560 NP_005551 A/G H1717Y plus 24601596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq" 20q13.2-q13.3 "laminin, alpha 5" 8042 rs875379 LAMA5 3911 20 60335381 NM_005560 NP_005551 A/G H1717Y plus 24601596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 20q13.2-q13.3 "laminin, alpha 5" 8043 rs875379 LAMA5 3911 20 60335381 NM_005560 NP_005551 A/G H1717Y plus 24601596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,freq" 20q13.2-q13.3 "laminin, alpha 5" 8044 rs877346 KRTAP13-2 337959 21 30665998 NM_181621 NP_853652 A/T C135X minus 1302383 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 116 "HapMap,doubleHit,freq,cluster" 21q22.1 keratin associated protein 13-2 8045 rs877346 KRTAP13-2 337959 21 30665998 NM_181621 NP_853652 A/T C135X minus 1302383 1303 SEQUENOM CEPH CEPH (92) 92 0.32 116 "HapMap,doubleHit,freq,cluster" 21q22.1 keratin associated protein 13-2 8046 rs877386 SH2D4A 63898 8 19265944 NM_022071 NP_071354 C/G G263A plus 1302443 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 8047 rs877386 SH2D4A 63898 8 19265944 NM_022071 NP_071354 C/G G263A plus 3213874 738 YUSUKE JBIC-ALLELE Japanese (752) 1266 0.17 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 8048 rs877386 SH2D4A 63898 8 19265944 NM_022071 NP_071354 C/G G263A plus 24165378 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 8049 rs877386 SH2D4A 63898 8 19265944 NM_022071 NP_071354 C/G G263A plus 24165378 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 8050 rs877386 SH2D4A 63898 8 19265944 NM_022071 NP_071354 C/G G263A plus 24165378 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 8051 rs877474 SLAC2-B 23086 11 107887513 NM_015065 NP_055880 A/G C1311R plus 1302551 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 11q23.1 SLAC2-B 8052 rs878756 MKL1 57591 22 39139000 NM_020831 NP_065882 A/G S648G minus 7998468 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 22q13 megakaryoblastic leukemia (translocation) 1 8053 rs878756 MKL1 57591 22 39139000 NM_020831 NP_065882 A/G S648G minus 24539613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 22q13 megakaryoblastic leukemia (translocation) 1 8054 rs878756 MKL1 57591 22 39139000 NM_020831 NP_065882 A/G S648G minus 24539613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 22q13 megakaryoblastic leukemia (translocation) 1 8055 rs878756 MKL1 57591 22 39139000 NM_020831 NP_065882 A/G S648G minus 24539613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 22q13 megakaryoblastic leukemia (translocation) 1 8056 rs878945 COLQ 8292 3 15484331 NM_080542 NP_536803 C/G K227N minus 4959516 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 900 0.35 123 "by doubleHit,freq,cluster" 3p25 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 8057 rs878945 COLQ 8292 3 15484331 NM_080542 NP_536803 C/G K227N minus 23854923 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 3p25 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 8058 rs878945 COLQ 8292 3 15484331 NM_080542 NP_536803 C/G K227N minus 23854923 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 3p25 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 8059 rs878945 COLQ 8292 3 15484331 NM_080542 NP_536803 C/G K227N minus 23854923 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 3p25 collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 8060 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8061 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 901 AFFY AfAm 12 0.25 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8062 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 902 AFFY Caucasian 24 0.42 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8063 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 903 AFFY Asian 12 0.33 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8064 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 904 AFFY CEPH 10 0.3 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8065 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 905 AFFY PDpanel 46 0.35 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8066 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 1306346 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8067 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 24260345 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8068 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 24260345 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8069 rs880303 GJA10 81025 1 39009375 NM_030772 NP_110399 C/T V497I plus 24260345 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq" 1p34 "gap junction protein, alpha 10, 59kDa" 8070 rs880525 DOT1L 84444 19 2167532 NM_032482 NP_115871 G/T L726M minus 1306671 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 19p13.3 "DOT1-like, histone H3 methyltransferase (S. cerevisiae)" 8071 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 1306850 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8072 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 1306850 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.49 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8073 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 1306850 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8074 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 3242452 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.37 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8075 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 24256121 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8076 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 24256121 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8077 rs880633 CHI3L1 1116 1 199884458 NM_001276 NP_001267 C/T R145G plus 24256121 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q32.1 chitinase 3-like 1 (cartilage glycoprotein-39) 8078 rs885479 MC1R 4157 16 88513655 NM_002386 NP_002377 A/G R163Q plus 1313046 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 "by doubleHit,freq,cluster" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 8079 rs885479 MC1R 4157 16 88513655 NM_002386 NP_002377 A/G R163Q plus 4472738 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 106 "by doubleHit,freq,cluster" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 8080 rs885479 MC1R 4157 16 88513655 NM_002386 NP_002377 A/G R163Q plus 4472738 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 106 "by doubleHit,freq,cluster" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 8081 rs886016 SARDH 1757 9 133585183 NM_007101 NP_009032 A/G M648V minus 1313716 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 9q33-q34 sarcosine dehydrogenase 8082 rs886016 SARDH 1757 9 133585183 NM_007101 NP_009032 A/G M648V minus 24687247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,freq,cluster" 9q33-q34 sarcosine dehydrogenase 8083 rs886016 SARDH 1757 9 133585183 NM_007101 NP_009032 A/G M648V minus 24687247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.21 123 "by doubleHit,freq,cluster" 9q33-q34 sarcosine dehydrogenase 8084 rs886016 SARDH 1757 9 133585183 NM_007101 NP_009032 A/G M648V minus 24687247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 9q33-q34 sarcosine dehydrogenase 8085 rs886089 SURF6 6838 9 133229020 NM_006753 NP_006744 A/G T175M plus 1313835 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.39 120 "HapMap,doubleHit" 9q34.2 surfeit 6 8086 rs886089 SURF6 6838 9 133229020 NM_006753 NP_006744 A/G T175M plus 1313835 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.47 120 "HapMap,doubleHit" 9q34.2 surfeit 6 8087 rs886089 SURF6 6838 9 133229020 NM_006753 NP_006744 A/G T175M plus 1313835 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit" 9q34.2 surfeit 6 8088 rs886089 SURF6 6838 9 133229020 NM_006753 NP_006744 A/G T175M plus 1313835 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 "HapMap,doubleHit" 9q34.2 surfeit 6 8089 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 1313836 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.07 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8090 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 1313836 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.42 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8091 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 1313836 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8092 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 1313836 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8093 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 24623677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8094 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 24623677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.06 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8095 rs886090 SURF6 6838 9 133229057 NM_006753 NP_006744 A/G R163W plus 24623677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq" 9q34.2 surfeit 6 8096 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 1315276 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8097 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 1315276 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8098 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 1315276 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8099 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 1315276 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.45 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8100 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 24596928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8101 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 24596928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8102 rs887241 ALDH3A1 218 17 19586530 NM_000691 NP_000682 G/T S134A minus 24596928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 8103 rs887515 NISCH 11188 3 52498445 NM_007184 NP_009115 C/T A1056V plus 16941433 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 121 "HapMap,doubleHit,freq,cluster" 3p21.1 nischarin 8104 rs887515 NISCH 11188 3 52498445 NM_007184 NP_009115 C/T A1056V plus 16941433 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "HapMap,doubleHit,freq,cluster" 3p21.1 nischarin 8105 rs887540 ACY1 95 3 51995670 NM_000666 NP_000657 C/T N179S minus 1315654 1303 SEQUENOM CEPH CEPH (92) 92 1 108 by doubleHit 3p21.1 aminoacylase 1 8106 rs888836 CCDC9 26093 19 52466612 NM_015603 NP_056418 A/G L478P minus 1317282 1303 SEQUENOM CEPH CEPH (92) 92 0.4 86 "by doubleHit,freq" 19q13.33 coiled-coil domain containing 9 8107 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 1317415 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8108 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 1317415 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 78 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8109 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 1317415 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8110 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 14690349 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8111 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 23570927 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8112 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 23570927 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8113 rs888930 SHD 56961 19 4239332 NM_020209 NP_064594 A/G N270S plus 23570927 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.3 src homology 2 domain-containing transforming protein D 8114 rs890503 SPTBN5 51332 15 39938180 NM_016642 NP_057726 C/T T2713I minus 1319440 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 8115 rs890757 EPB41L4A 64097 5 111573569 NM_022140 NP_071423 C/G S366T plus 1319777 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 8116 rs890757 EPB41L4A 64097 5 111573569 NM_022140 NP_071423 C/G S366T plus 1319777 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 8117 rs890757 EPB41L4A 64097 5 111573569 NM_022140 NP_071423 C/G S366T plus 23412563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 8118 rs890757 EPB41L4A 64097 5 111573569 NM_022140 NP_071423 C/G S366T plus 23412563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 8119 rs890757 EPB41L4A 64097 5 111573569 NM_022140 NP_071423 C/G S366T plus 23412563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 8120 rs890802 COL23A1 91522 5 177615983 NM_173465 NP_775736 A/G T287A minus 24373538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 5q35.3 "collagen, type XXIII, alpha 1" 8121 rs890802 COL23A1 91522 5 177615983 NM_173465 NP_775736 A/G T287A minus 24373538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 5q35.3 "collagen, type XXIII, alpha 1" 8122 rs890802 COL23A1 91522 5 177615983 NM_173465 NP_775736 A/G T287A minus 24373538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 5q35.3 "collagen, type XXIII, alpha 1" 8123 rs890837 PLVAP 83483 19 17337937 NM_031310 NP_112600 A/C Q146P minus 1319890 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 86 HapMap 19p13.2 plasmalemma vesicle associated protein 8124 rs890837 PLVAP 83483 19 17337937 NM_031310 NP_112600 A/C Q146P minus 1319890 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 1 86 HapMap 19p13.2 plasmalemma vesicle associated protein 8125 rs890837 PLVAP 83483 19 17337937 NM_031310 NP_112600 A/C Q146P minus 1319890 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 86 HapMap 19p13.2 plasmalemma vesicle associated protein 8126 rs890837 PLVAP 83483 19 17337937 NM_031310 NP_112600 A/C Q146P minus 1319890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 19p13.2 plasmalemma vesicle associated protein 8127 rs890837 PLVAP 83483 19 17337937 NM_031310 NP_112600 A/C Q146P minus 1319890 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 19p13.2 plasmalemma vesicle associated protein 8128 rs891174 TMPRSS9 360200 19 2340872 NM_182973 NP_892018 C/G S30T plus 5319833 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 111 "HapMap,doubleHit,freq" 19p13.3 transmembrane serine protease 9 8129 rs891398 CHRNA2 1135 8 27380739 NM_000742 NP_000733 C/T T125A plus 3869264 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 8130 rs891398 CHRNA2 1135 8 27380739 NM_000742 NP_000733 C/T T125A plus 4921754 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 123 "by doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 8131 rs891398 CHRNA2 1135 8 27380739 NM_000742 NP_000733 C/T T125A plus 24545141 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 8132 rs891398 CHRNA2 1135 8 27380739 NM_000742 NP_000733 C/T T125A plus 24545141 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 8133 rs891398 CHRNA2 1135 8 27380739 NM_000742 NP_000733 C/T T125A plus 24545141 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 8134 rs892055 RASGRP4 115727 19 43604604 NM_052949 NP_443181 A/G I18T plus 1321504 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8135 rs892055 RASGRP4 115727 19 43604604 NM_052949 NP_443181 A/G I18T plus 24195722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8136 rs892055 RASGRP4 115727 19 43604604 NM_052949 NP_443181 A/G I18T plus 24195722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8137 rs892055 RASGRP4 115727 19 43604604 NM_052949 NP_443181 A/G I18T plus 24195722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8138 rs892055 RASGRP4 115727 19 43604604 NM_170602 NP_733747 A/G I18T plus 1321504 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8139 rs892055 RASGRP4 115727 19 43604604 NM_170602 NP_733747 A/G I18T plus 24195722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8140 rs892055 RASGRP4 115727 19 43604604 NM_170602 NP_733747 A/G I18T plus 24195722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8141 rs892055 RASGRP4 115727 19 43604604 NM_170602 NP_733747 A/G I18T plus 24195722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8142 rs892055 RASGRP4 115727 19 43604604 NM_170603 NP_733748 A/G I18T plus 1321504 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8143 rs892055 RASGRP4 115727 19 43604604 NM_170603 NP_733748 A/G I18T plus 24195722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8144 rs892055 RASGRP4 115727 19 43604604 NM_170603 NP_733748 A/G I18T plus 24195722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8145 rs892055 RASGRP4 115727 19 43604604 NM_170603 NP_733748 A/G I18T plus 24195722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8146 rs892055 RASGRP4 115727 19 43604604 NM_170604 NP_733749 A/G I18T plus 1321504 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8147 rs892055 RASGRP4 115727 19 43604604 NM_170604 NP_733749 A/G I18T plus 24195722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8148 rs892055 RASGRP4 115727 19 43604604 NM_170604 NP_733749 A/G I18T plus 24195722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8149 rs892055 RASGRP4 115727 19 43604604 NM_170604 NP_733749 A/G I18T plus 24195722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.1 RAS guanyl releasing protein 4 8150 rs892586 TCEB3B 51224 18 42814427 NM_016427 NP_057511 G/T A403S minus 1322174 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 121 "HapMap,doubleHit,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 8151 rs892586 TCEB3B 51224 18 42814427 NM_016427 NP_057511 G/T A403S minus 5013069 738 YUSUKE JBIC-ALLELE Japanese (752) 912 0.27 121 "HapMap,doubleHit,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 8152 rs893184 A1BG 1 19 63556291 NM_130786 NP_570602 A/G H52R minus 1322905 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,freq,cluster" 19q13.4 alpha-1-B glycoprotein 8153 rs893253 PIP5K3 200576 2 209016034 NM_015040 NP_055855 C/G T998S minus 1323017 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8154 rs893254 PIP5K3 200576 2 209016025 NM_015040 NP_055855 A/T Q995L minus 1323018 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.22 121 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8155 rs893254 PIP5K3 200576 2 209016025 NM_015040 NP_055855 A/T Q995L minus 1323018 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 121 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8156 rs895497 IL1F6 27179 2 113479806 NM_014440 NP_055255 C/T Q12R minus 1325858 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 2q12-q14.1 "interleukin 1 family, member 6 (epsilon)" 8157 rs895497 IL1F6 27179 2 113479806 NM_014440 NP_055255 C/T Q12R minus 1325858 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 2q12-q14.1 "interleukin 1 family, member 6 (epsilon)" 8158 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 1326965 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.24 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8159 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 1326965 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 81 0.43 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8160 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 1326965 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.27 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8161 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 3236059 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.34 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8162 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 24716875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8163 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 24716875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8164 rs896378 SLC39A14 23516 8 22318266 NM_015359 NP_056174 C/T L33P plus 24716875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 8p21.2 "solute carrier family 39 (zinc transporter), member 14" 8165 rs897416 KRTHA8 8687 17 36847294 NM_006771 NP_006762 C/T S423P minus 1328204 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 8" 8166 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 1328589 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.41 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8167 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 1328589 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.3 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8168 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 1328589 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.29 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8169 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 1328589 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.23 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8170 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 3173227 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.39 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8171 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 24074321 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8172 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 24074321 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8173 rs897738 EMR1 2015 19 6852891 NM_001974 NP_001965 C/T D174N minus 24074321 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 8174 rs897804 HOOK2 29911 19 12737964 NM_013312 NP_037444 C/G H488Q minus 5294034 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 by freq 19p13.2 hook homolog 2 (Drosophila) 8175 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 1328858 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8176 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 1328858 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8177 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 3253231 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8178 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 24236182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8179 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 24236182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8180 rs897945 THAP9 79725 4 84195441 NM_024672 NP_078948 A/C L299F minus 24236182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 THAP domain containing 9 8181 rs899440 MYBBP1A 10514 17 4395689 NM_014520 NP_055335 A/G H680Y plus 1330789 3 KWOK C USA Caucasian (30) 84 1 86 by freq 17p13.3 MYB binding protein (P160) 1a 8182 rs899440 MYBBP1A 10514 17 4395689 NM_014520 NP_055335 A/G H680Y plus 1330789 5 KWOK B USA African-American (30) 84 1 86 by freq 17p13.3 MYB binding protein (P160) 1a 8183 rs899440 MYBBP1A 10514 17 4395689 NM_014520 NP_055335 A/G H680Y plus 1330789 7 KWOK A Chinese (30) 84 1 86 by freq 17p13.3 MYB binding protein (P160) 1a 8184 rs899440 MYBBP1A 10514 17 4395689 NM_014520 NP_055335 A/G H680Y plus 1330789 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 17p13.3 MYB binding protein (P160) 1a 8185 rs901363 SYTL3 94120 6 159148754 XM_087804 XP_087804 A/G P414S minus 1333221 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 8186 rs901363 SYTL3 94120 6 159148754 XM_087804 XP_087804 A/G P414S minus 23459086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 8187 rs901363 SYTL3 94120 6 159148754 XM_087804 XP_087804 A/G P414S minus 23459086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 8188 rs901363 SYTL3 94120 6 159148754 XM_087804 XP_087804 A/G P414S minus 23459086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 8189 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 1334225 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8190 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 1334225 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.2 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8191 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 1334225 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8192 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 1334225 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8193 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 1334225 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8194 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 24178144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8195 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 24178144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8196 rs902174 MLF1IP 79682 4 186030320 NM_024629 NP_078905 A/G G16S minus 24178144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq" 4q35.1 KSHV latent nuclear antigen interacting protein 1 8197 rs902393 FRMD1 79981 6 168282180 NM_024919 NP_079195 A/G R274C plus 1334482 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq" 6q27 FERM domain containing 1 8198 rs902393 FRMD1 79981 6 168282180 NM_024919 NP_079195 A/G R274C plus 1334482 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,submitter,freq" 6q27 FERM domain containing 1 8199 rs902393 FRMD1 79981 6 168282180 NM_024919 NP_079195 A/G R274C plus 24623197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 6q27 FERM domain containing 1 8200 rs902393 FRMD1 79981 6 168282180 NM_024919 NP_079195 A/G R274C plus 24623197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,submitter,freq" 6q27 FERM domain containing 1 8201 rs902393 FRMD1 79981 6 168282180 NM_024919 NP_079195 A/G R274C plus 24623197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.05 123 "HapMap,submitter,freq" 6q27 FERM domain containing 1 8202 rs902790 GPR156 165829 3 121369466 NM_153002 NP_694547 A/T E516D minus 23255540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 3q13.33 G protein-coupled receptor 156 8203 rs902790 GPR156 165829 3 121369466 NM_153002 NP_694547 A/T E516D minus 23255540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 3q13.33 G protein-coupled receptor 156 8204 rs902790 GPR156 165829 3 121369466 NM_153002 NP_694547 A/T E516D minus 23255540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 3q13.33 G protein-coupled receptor 156 8205 rs903365 PPFIA4 8497 1 199776699 XM_046751 XP_046751 C/T C1347R plus 1335657 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq,cluster" 1q32.1 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4" 8206 rs904383 HLC-8 55028 17 68744402 NM_017941 NP_060411 A/G C396R minus 1336932 1303 SEQUENOM CEPH CEPH (92) 92 0.29 120 "by doubleHit,freq,cluster" 17q25.1 lung cancer-related protein 8 8207 rs904384 HLC-8 55028 17 68744399 NM_017941 NP_060411 G/T H395N minus 1336933 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 17q25.1 lung cancer-related protein 8 8208 rs904411 MAN1 23592 12 63850304 NM_014319 NP_055134 C/G E221Q plus 1336968 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 86 HapMap 12q14 integral inner nuclear membrane protein 8209 rs904411 MAN1 23592 12 63850304 NM_014319 NP_055134 C/G E221Q plus 1336968 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 12q14 integral inner nuclear membrane protein 8210 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.15 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8211 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.3 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8212 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 58 0.14 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8213 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 326 0.14 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8214 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8215 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 1337472 1303 SEQUENOM CEPH CEPH (92) 92 0.25 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8216 rs904763 AP1G1 164 16 70330691 NM_001128 NP_001119 A/C P688H minus 4981064 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.3 108 "HapMap,submitter,freq,cluster" 16q23 "adaptor-related protein complex 1, gamma 1 subunit" 8217 rs905768 NXF 266743 11 65946912 NM_178864 NP_849195 G/T G208C plus 1338769 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 11q13 HLH-PAS transcription factor NXF 8218 rs905768 NXF 266743 11 65946912 NM_178864 NP_849195 G/T G208C plus 1338769 1303 SEQUENOM CEPH CEPH (92) 92 0.01 86 HapMap 11q13 HLH-PAS transcription factor NXF 8219 rs905871 OR51D1 390038 11 4617861 XM_372349 XP_372349 C/T I125V minus 1338912 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.34 120 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily D, member 1" 8220 rs905871 OR51D1 390038 11 4617861 XM_372349 XP_372349 C/T I125V minus 1338912 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.32 120 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily D, member 1" 8221 rs905871 OR51D1 390038 11 4617861 XM_372349 XP_372349 C/T I125V minus 6157343 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily D, member 1" 8222 rs906807 NDUFV2 4729 18 9107867 NM_021074 NP_066552 A/G V29A minus 1340074 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "by doubleHit,submitter,freq" 18p11.31-p11.2 "NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa" 8223 rs907608 SYT8 90019 11 1813819 NM_138567 NP_612634 A/G R143Q plus 1341085 1303 SEQUENOM CEPH CEPH (92) 92 0.19 108 "by cluster,freq" 11p15.5 synaptotagmin VIII 8224 rs907608 SYT8 90019 11 1813819 NM_138567 NP_612634 A/G R143Q plus 4927238 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.09 108 "by cluster,freq" 11p15.5 synaptotagmin VIII 8225 rs907609 SYT8 90019 11 1813846 NM_138567 NP_612634 C/T T152M plus 1341086 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 108 "HapMap,freq,cluster" 11p15.5 synaptotagmin VIII 8226 rs907609 SYT8 90019 11 1813846 NM_138567 NP_612634 C/T T152M plus 1341086 1303 SEQUENOM CEPH CEPH (92) 92 0.15 108 "HapMap,freq,cluster" 11p15.5 synaptotagmin VIII 8227 rs907609 SYT8 90019 11 1813846 NM_138567 NP_612634 C/T T152M plus 4927237 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.08 108 "HapMap,freq,cluster" 11p15.5 synaptotagmin VIII 8228 rs908828 ABCA2 20 9 137189076 NM_001606 NP_001597 A/C H584P minus 12006114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 9q34 "ATP-binding cassette, sub-family A (ABC1), member 2" 8229 rs908828 ABCA2 20 9 137189076 NM_001606 NP_001597 A/C H584P minus 12006114 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,doubleHit,cluster" 9q34 "ATP-binding cassette, sub-family A (ABC1), member 2" 8230 rs908828 ABCA2 20 9 137189076 NM_212533 NP_997698 A/C H614P minus 12006114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 9q34 "ATP-binding cassette, sub-family A (ABC1), member 2" 8231 rs908828 ABCA2 20 9 137189076 NM_212533 NP_997698 A/C H614P minus 12006114 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,doubleHit,cluster" 9q34 "ATP-binding cassette, sub-family A (ABC1), member 2" 8232 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 1343488 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8233 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 1343488 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8234 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 1343488 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8235 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 1343488 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.28 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8236 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 1343488 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8237 rs909545 TTLL2 83887 6 167725072 NM_031949 NP_114155 A/G R425G plus 3237568 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.24 121 "by doubleHit,submitter,freq,cluster" 6q27 "tubulin tyrosine ligase-like family, member 2" 8238 rs910122 CHGB 1114 20 5851323 NM_001819 NP_001810 A/G R178Q plus 1344171 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.4 100 "HapMap,doubleHit,freq,cluster" 20pter-p12 chromogranin B (secretogranin 1) 8239 rs910122 CHGB 1114 20 5851323 NM_001819 NP_001810 A/G R178Q plus 3219758 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.47 100 "HapMap,doubleHit,freq,cluster" 20pter-p12 chromogranin B (secretogranin 1) 8240 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 1344491 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.4 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8241 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 1344491 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 42 0.5 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8242 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 1344491 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.15 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8243 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 8372329 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8244 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 24537183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8245 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 24537183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8246 rs910397 PXMP4 11264 20 31759202 NM_007238 NP_009169 C/T V204I plus 24537183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 20q11.22 "peroxisomal membrane protein 4, 24kDa" 8247 rs910799 ZBED4 9889 22 48599429 XM_376023 XP_376023 A/G I420V plus 8024237 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "by doubleHit,submitter,freq,cluster" 22q13.33 "zinc finger, BED domain containing 4" 8248 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.21 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8249 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.49 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8250 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 640 TSC-CSHL TSC_42_A TSC Asian (42) 80 0.26 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8251 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.23 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8252 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 56 0.29 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8253 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.48 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8254 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 328 0.46 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8255 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.15 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8256 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.39 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8257 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.33 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8258 rs910925 GEMIN4 50628 17 596297 NM_015721 NP_056536 C/G A579G minus 1345109 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 8259 rs911083 FAM14A 83982 14 93663908 NM_032036 NP_114425 A/G S125L plus 1345292 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 HapMap 14q32.2 "family with sequence similarity 14, member A" 8260 rs911083 FAM14A 83982 14 93663908 NM_032036 NP_114425 A/G S125L plus 1345292 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 14q32.2 "family with sequence similarity 14, member A" 8261 rs911083 FAM14A 83982 14 93663908 NM_032036 NP_114425 A/G S125L plus 1345292 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 HapMap 14q32.2 "family with sequence similarity 14, member A" 8262 rs911083 FAM14A 83982 14 93663908 NM_032036 NP_114425 A/G S125L plus 1345292 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 14q32.2 "family with sequence similarity 14, member A" 8263 rs911083 FAM14A 83982 14 93663908 NM_032036 NP_114425 A/G S125L plus 1345292 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 14q32.2 "family with sequence similarity 14, member A" 8264 rs911973 MYR8 23026 13 108236085 XM_028522 XP_028522 A/T D479E minus 1346357 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 13q33.3 myosin heavy chain Myr 8 8265 rs911973 MYR8 23026 13 108236085 XM_028522 XP_028522 A/T D479E minus 24087998 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 13q33.3 myosin heavy chain Myr 8 8266 rs911973 MYR8 23026 13 108236085 XM_028522 XP_028522 A/T D479E minus 24087998 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 13q33.3 myosin heavy chain Myr 8 8267 rs911973 MYR8 23026 13 108236085 XM_028522 XP_028522 A/T D479E minus 24087998 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 13q33.3 myosin heavy chain Myr 8 8268 rs912174 ANKRD15 23189 9 702156 NM_015158 NP_055973 A/C S306A minus 1346604 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 86 "HapMap,doubleHit,submitter,freq" 9p24.3 ankyrin repeat domain 15 8269 rs912174 ANKRD15 23189 9 702156 NM_015158 NP_055973 A/C S306A minus 1346604 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 "HapMap,doubleHit,submitter,freq" 9p24.3 ankyrin repeat domain 15 8270 rs912174 ANKRD15 23189 9 702156 NM_153186 NP_694856 A/C S306A minus 1346604 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 86 "HapMap,doubleHit,submitter,freq" 9p24.3 ankyrin repeat domain 15 8271 rs912174 ANKRD15 23189 9 702156 NM_153186 NP_694856 A/C S306A minus 1346604 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 "HapMap,doubleHit,submitter,freq" 9p24.3 ankyrin repeat domain 15 8272 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 1348328 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8273 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 1348328 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 68 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8274 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 1348328 640 TSC-CSHL TSC_42_A TSC Asian (42) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8275 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 1348328 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8276 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 1348328 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8277 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 24565335 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8278 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 24565335 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8279 rs913588 JMJD2C 23081 9 7164673 NM_015061 NP_055876 A/G V1039I plus 24565335 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 8280 rs914358 AKAP2 11217 9 109979754 NM_007203 NP_009134 A/G L792S minus 1349274 638 TSC-CSHL TSC_42_AA TSC African American (42) 36 0.5 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8281 rs914358 AKAP2 11217 9 109979754 NM_007203 NP_009134 A/G L792S minus 1349274 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.42 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8282 rs914358 AKAP2 11217 9 109979754 NM_007203 NP_009134 A/G L792S minus 1349274 640 TSC-CSHL TSC_42_A TSC Asian (42) 72 0.28 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8283 rs914358 AKAP2 11217 9 109979754 NM_007203 NP_009134 A/G L792S minus 1349274 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8284 rs914358 AKAP2 11217 9 109979754 NM_007203 NP_009134 A/G L792S minus 1349274 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8285 rs914358 AKAP2 11217 9 109979754 NM_147150 NP_671492 A/G L792S minus 1349274 638 TSC-CSHL TSC_42_AA TSC African American (42) 36 0.5 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8286 rs914358 AKAP2 11217 9 109979754 NM_147150 NP_671492 A/G L792S minus 1349274 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.42 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8287 rs914358 AKAP2 11217 9 109979754 NM_147150 NP_671492 A/G L792S minus 1349274 640 TSC-CSHL TSC_42_A TSC Asian (42) 72 0.28 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8288 rs914358 AKAP2 11217 9 109979754 NM_147150 NP_671492 A/G L792S minus 1349274 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8289 rs914358 AKAP2 11217 9 109979754 NM_147150 NP_671492 A/G L792S minus 1349274 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,doubleHit,submitter,freq,cluster" 9q31-q33 A kinase (PRKA) anchor protein 2 8290 rs914980 DKFZp434P0216 256158 9 130290767 XM_175125 XP_175125 C/G R1328G minus 1350022 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 86 "by doubleHit,freq" 9q34.2 hemicentin-2 8291 rs914980 DKFZp434P0216 256158 9 130290767 XM_175125 XP_175125 C/G R1328G minus 1350022 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 86 "by doubleHit,freq" 9q34.2 hemicentin-2 8292 rs914980 DKFZp434P0216 256158 9 130290767 XM_175125 XP_175125 C/G R1328G minus 1350022 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 86 "by doubleHit,freq" 9q34.2 hemicentin-2 8293 rs914980 DKFZp434P0216 256158 9 130290767 XM_175125 XP_175125 C/G R1328G minus 1350022 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.1 86 "by doubleHit,freq" 9q34.2 hemicentin-2 8294 rs915836 ZNF295 49854 21 42286430 NM_020727 NP_065778 C/T V282I plus 1351111 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 1 86 by freq 21q22.3 zinc finger protein 295 8295 rs915836 ZNF295 49854 21 42286430 NM_020727 NP_065778 C/T V282I plus 1351111 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 1 86 by freq 21q22.3 zinc finger protein 295 8296 rs915836 ZNF295 49854 21 42286430 NM_020727 NP_065778 C/T V282I plus 1351111 640 TSC-CSHL TSC_42_A TSC Asian (42) 74 1 86 by freq 21q22.3 zinc finger protein 295 8297 rs915836 ZNF295 49854 21 42286430 NM_020727 NP_065778 C/T V282I plus 1351111 1303 SEQUENOM CEPH CEPH (92) 92 0.49 86 by freq 21q22.3 zinc finger protein 295 8298 rs915843 ABCG1 9619 21 42552623 NM_207630 NP_997513 C/T P172L plus 4020640 634 PERLEGEN NCBI|NIHPDR NIHPDR 10 0.4 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "ATP-binding cassette, sub-family G (WHITE), member 1" 8299 rs915843 ABCG1 9619 21 42552623 NM_207630 NP_997513 C/T P172L plus 4974360 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.12 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "ATP-binding cassette, sub-family G (WHITE), member 1" 8300 rs915843 ABCG1 9619 21 42552623 NM_207630 NP_997513 C/T P172L plus 23652333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "ATP-binding cassette, sub-family G (WHITE), member 1" 8301 rs915843 ABCG1 9619 21 42552623 NM_207630 NP_997513 C/T P172L plus 23652333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "ATP-binding cassette, sub-family G (WHITE), member 1" 8302 rs915843 ABCG1 9619 21 42552623 NM_207630 NP_997513 C/T P172L plus 23652333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "ATP-binding cassette, sub-family G (WHITE), member 1" 8303 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.07 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8304 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8305 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 901 AFFY AfAm 12 1 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8306 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 902 AFFY Caucasian 24 0.13 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8307 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 903 AFFY Asian 12 1 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8308 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 904 AFFY CEPH 12 1 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8309 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 905 AFFY PDpanel 48 0.04 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8310 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 1351180 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8311 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 24517091 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8312 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 24517091 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8313 rs915877 TMEM1 7109 21 44327272 NM_003274 NP_003265 G/T I633M plus 24517091 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 21q22.3 transmembrane protein 1 8314 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.1 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8315 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 77 0.36 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8316 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.28 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8317 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8318 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8319 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8320 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.39 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8321 rs917340 ZNF264 9422 19 62414825 XM_375660 XP_375660 A/G R183H plus 1352977 1303 SEQUENOM CEPH CEPH (92) 92 0.45 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 264 8322 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 1353000 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8323 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 4930564 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8324 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 5180153 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8325 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 5180153 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8326 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 24701602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8327 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 24701602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8328 rs917361 MYH4 4622 17 10296488 NM_017533 NP_060003 C/T I1106M plus 24701602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 8329 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 1353203 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.12 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8330 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 1353203 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.01 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8331 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 1353203 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8332 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 23351567 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8333 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 23351567 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8334 rs917535 PCDHB11 56125 5 140559551 NM_018931 NP_061754 C/T R7H minus 23351567 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 11 8335 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.25 86 HapMap 2p15 aftiphilin protein 8336 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.19 86 HapMap 2p15 aftiphilin protein 8337 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 HapMap 2p15 aftiphilin protein 8338 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 86 HapMap 2p15 aftiphilin protein 8339 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 1 86 HapMap 2p15 aftiphilin protein 8340 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2p15 aftiphilin protein 8341 rs918291 AFTIPHILIN 54812 2 64691050 NM_017657 NP_060127 A/C N264T plus 1354120 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2p15 aftiphilin protein 8342 rs918949 TNS 7145 2 218500203 NM_022648 NP_072174 C/T V1604I plus 23885772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q35-q36 tensin 8343 rs918949 TNS 7145 2 218500203 NM_022648 NP_072174 C/T V1604I plus 23885772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 2q35-q36 tensin 8344 rs918949 TNS 7145 2 218500203 NM_022648 NP_072174 C/T V1604I plus 23885772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 2q35-q36 tensin 8345 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.45 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8346 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.25 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8347 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8348 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 318 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8349 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8350 rs919364 DKKL1 27120 19 54559725 NM_014419 NP_055234 A/G A29T plus 1355520 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 soggy-1 gene 8351 rs920829 TRPA1 8989 8 73140257 NM_007332 NP_015628 A/G E179K minus 24046772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 8352 rs920829 TRPA1 8989 8 73140257 NM_007332 NP_015628 A/G E179K minus 24046772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 8353 rs920829 TRPA1 8989 8 73140257 NM_007332 NP_015628 A/G E179K minus 24046772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 8354 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.05 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8355 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8356 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8357 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 74 0.01 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8358 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8359 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 1357634 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8360 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 24490921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8361 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 24490921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8362 rs921122 NOL8 55035 9 92143502 NM_017948 NP_060418 C/T G1021S plus 24490921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq" 9q22.32 nucleolar protein 8 8363 rs921135 OR6Q1 219952 11 57555299 XM_166910 XP_166910 A/G D100G plus 1357652 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 120 "HapMap,doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 6, subfamily Q, member 1" 8364 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 1359563 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8365 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 1359563 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.05 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8366 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 1359563 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8367 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 1359563 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.01 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8368 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 10138604 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8369 rs922697 SPON2 10417 4 1155571 NM_012445 NP_036577 A/G L40P plus 10138604 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 8370 rs922949 FRMD4B 23150 3 69518121 XM_114303 XP_114303 C/T S130P minus 23920419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 8371 rs922949 FRMD4B 23150 3 69518121 XM_114303 XP_114303 C/T S130P minus 23920419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 8372 rs922949 FRMD4B 23150 3 69518121 XM_114303 XP_114303 C/T S130P minus 23920419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 8373 rs922984 TTN 7273 2 179441393 NM_133379 NP_596870 C/T D3747G plus 1359909 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8374 rs922984 TTN 7273 2 179441393 NM_133379 NP_596870 C/T D3747G plus 24162008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8375 rs922984 TTN 7273 2 179441393 NM_133379 NP_596870 C/T D3747G plus 24162008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8376 rs922984 TTN 7273 2 179441393 NM_133379 NP_596870 C/T D3747G plus 24162008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8377 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 1359910 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8378 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 1359910 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8379 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 1359910 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8380 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 23705286 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8381 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 23705286 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8382 rs922985 TTN 7273 2 179441437 NM_133379 NP_596870 C/G L3732F plus 23705286 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 8383 rs922999 NETO1 81832 18 68568376 NM_138966 NP_620416 C/T S481N plus 1359931 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8384 rs922999 NETO1 81832 18 68568376 NM_138966 NP_620416 C/T S481N plus 1359931 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8385 rs922999 NETO1 81832 18 68568376 NM_138966 NP_620416 C/T S481N plus 1359931 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8386 rs922999 NETO1 81832 18 68568376 NM_138966 NP_620416 C/T S481N plus 1359931 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8387 rs922999 NETO1 81832 18 68568376 NM_153181 NP_694821 C/T S480N plus 1359931 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8388 rs922999 NETO1 81832 18 68568376 NM_153181 NP_694821 C/T S480N plus 1359931 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8389 rs922999 NETO1 81832 18 68568376 NM_153181 NP_694821 C/T S480N plus 1359931 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8390 rs922999 NETO1 81832 18 68568376 NM_153181 NP_694821 C/T S480N plus 1359931 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 8391 rs925368 GIT2 9815 12 108853699 NM_014776 NP_055591 A/G N387S minus 1362840 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8392 rs925368 GIT2 9815 12 108853699 NM_014776 NP_055591 A/G N387S minus 1362840 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8393 rs925368 GIT2 9815 12 108853699 NM_014776 NP_055591 A/G N387S minus 1362840 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8394 rs925368 GIT2 9815 12 108853699 NM_014776 NP_055591 A/G N387S minus 1362840 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8395 rs925368 GIT2 9815 12 108853699 NM_014776 NP_055591 A/G N387S minus 1362840 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8396 rs925368 GIT2 9815 12 108853699 NM_057169 NP_476510 A/G N387S minus 1362840 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8397 rs925368 GIT2 9815 12 108853699 NM_057169 NP_476510 A/G N387S minus 1362840 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8398 rs925368 GIT2 9815 12 108853699 NM_057169 NP_476510 A/G N387S minus 1362840 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8399 rs925368 GIT2 9815 12 108853699 NM_057169 NP_476510 A/G N387S minus 1362840 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8400 rs925368 GIT2 9815 12 108853699 NM_057169 NP_476510 A/G N387S minus 1362840 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8401 rs925368 GIT2 9815 12 108853699 NM_057170 NP_476511 A/G N387S minus 1362840 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8402 rs925368 GIT2 9815 12 108853699 NM_057170 NP_476511 A/G N387S minus 1362840 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8403 rs925368 GIT2 9815 12 108853699 NM_057170 NP_476511 A/G N387S minus 1362840 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8404 rs925368 GIT2 9815 12 108853699 NM_057170 NP_476511 A/G N387S minus 1362840 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8405 rs925368 GIT2 9815 12 108853699 NM_057170 NP_476511 A/G N387S minus 1362840 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8406 rs925368 GIT2 9815 12 108853699 NM_139201 NP_631940 A/G N387S minus 1362840 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8407 rs925368 GIT2 9815 12 108853699 NM_139201 NP_631940 A/G N387S minus 1362840 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8408 rs925368 GIT2 9815 12 108853699 NM_139201 NP_631940 A/G N387S minus 1362840 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8409 rs925368 GIT2 9815 12 108853699 NM_139201 NP_631940 A/G N387S minus 1362840 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8410 rs925368 GIT2 9815 12 108853699 NM_139201 NP_631940 A/G N387S minus 1362840 1303 SEQUENOM CEPH CEPH (92) 92 1 108 "HapMap,submitter,freq,cluster" 12q24.1 G protein-coupled receptor kinase interactor 2 8411 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 1363699 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.44 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8412 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 1363699 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8413 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 4934830 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8414 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 23156667 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8415 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 23156667 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8416 rs926103 SH2D2A 9047 1 153598055 NM_003975 NP_003966 A/G N52S minus 23156667 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q21 SH2 domain protein 2A 8417 rs926487 ZNF337 26152 20 25614737 NM_015655 NP_056470 A/G V17I minus 8363016 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 116 "HapMap,doubleHit,freq,cluster" 20p11.21 zinc finger protein 337 8418 rs927344 ABCC2 1244 10 101534437 NM_000392 NP_000383 A/T Y39F plus 5162667 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 8419 rs927344 ABCC2 1244 10 101534437 NM_000392 NP_000383 A/T Y39F plus 12580169 892 PHARMGKB_PMT PA128307340 492 0.01 121 "by doubleHit,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 8420 rs928302 TMPRSS3 64699 21 42683153 NM_024022 NP_076927 C/T V53I plus 1366308 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8421 rs928302 TMPRSS3 64699 21 42683153 NM_024022 NP_076927 C/T V53I plus 24132830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8422 rs928302 TMPRSS3 64699 21 42683153 NM_024022 NP_076927 C/T V53I plus 24132830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8423 rs928302 TMPRSS3 64699 21 42683153 NM_024022 NP_076927 C/T V53I plus 24132830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8424 rs928302 TMPRSS3 64699 21 42683153 NM_032405 NP_115781 C/T V53I plus 1366308 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8425 rs928302 TMPRSS3 64699 21 42683153 NM_032405 NP_115781 C/T V53I plus 24132830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8426 rs928302 TMPRSS3 64699 21 42683153 NM_032405 NP_115781 C/T V53I plus 24132830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8427 rs928302 TMPRSS3 64699 21 42683153 NM_032405 NP_115781 C/T V53I plus 24132830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 8428 rs929038 SH3BP1 23616 22 36371166 NM_018957 NP_061830 C/T P431L plus 1367208 1303 SEQUENOM CEPH CEPH (92) 92 1 119 by doubleHit 22q13.1 SH3-domain binding protein 1 8429 rs929156 TRIM15 89870 6 30247678 NM_033229 NP_150232 C/T S324N minus 1367361 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 6p21 tripartite motif-containing 15 8430 rs929156 TRIM15 89870 6 30247678 NM_033229 NP_150232 C/T S324N minus 24304684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6p21 tripartite motif-containing 15 8431 rs929156 TRIM15 89870 6 30247678 NM_033229 NP_150232 C/T S324N minus 24304684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21 tripartite motif-containing 15 8432 rs929156 TRIM15 89870 6 30247678 NM_033229 NP_150232 C/T S324N minus 24304684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21 tripartite motif-containing 15 8433 rs929156 TRIM15 89870 6 30247678 NM_033229 NP_150232 C/T S324N minus 24796250 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "by doubleHit,freq,cluster" 6p21 tripartite motif-containing 15 8434 rs929387 GLI3 2737 7 41778918 NM_000168 NP_000159 C/T P998L minus 23376218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 8435 rs929387 GLI3 2737 7 41778918 NM_000168 NP_000159 C/T P998L minus 23376218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 8436 rs929387 GLI3 2737 7 41778918 NM_000168 NP_000159 C/T P998L minus 23376218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "by doubleHit,freq,cluster" 7p13 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) 8437 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 1368537 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8438 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 1368537 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8439 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 1368537 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8440 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 1368537 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8441 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 1368537 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8442 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 9948125 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8443 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 23706425 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8444 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 23706425 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8445 rs930137 UNQ5830 400943 2 10094499 NM_207480 NP_997363 C/T M5T minus 23706425 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 AILT5830 8446 rs930337 SORD 6652 15 43151826 NM_003104 NP_003095 A/C N269T plus 5252928 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by submitter,freq,cluster" 15q15.3 sorbitol dehydrogenase 8447 rs930337 SORD 6652 15 43151826 NM_003104 NP_003095 A/C N269T plus 24802709 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "by submitter,freq,cluster" 15q15.3 sorbitol dehydrogenase 8448 rs930871 SENP8 123228 15 70219637 NM_145204 NP_660205 A/G T207A plus 1369408 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by cluster,freq" 15q22.33 SUMO/sentrin specific protease family member 8 8449 rs930871 SENP8 123228 15 70219637 NM_145204 NP_660205 A/G T207A plus 23511010 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q22.33 SUMO/sentrin specific protease family member 8 8450 rs930871 SENP8 123228 15 70219637 NM_145204 NP_660205 A/G T207A plus 23511010 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 15q22.33 SUMO/sentrin specific protease family member 8 8451 rs930871 SENP8 123228 15 70219637 NM_145204 NP_660205 A/G T207A plus 23511010 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q22.33 SUMO/sentrin specific protease family member 8 8452 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 762 TSC-CSHL MOT_AFRICAN_AMERICAN MOTOROLA African-American (30) 58 1 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8453 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 763 TSC-CSHL MOT_ASIAN MOTOROLA Asian (30) 60 0.2 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8454 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 764 TSC-CSHL MOT_CAUCASIAN MOTOROLA Caucasian (30) 60 1 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8455 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 765 TSC-CSHL MOT_CAUCASIAN_CEPH MOTOROLA CEPH Caucasians (637) 320 0.02 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8456 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8457 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8458 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8459 rs933135 PLCD1 5333 3 38027729 NM_006225 NP_006216 C/T R257H plus 1372137 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.02 111 by freq 3p22-p21.3 "phospholipase C, delta 1" 8460 rs933703 CTRC 11330 1 15510279 NM_007272 NP_009203 A/T T5S plus 1372839 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 HapMap 1p36.13 chymotrypsin C (caldecrin) 8461 rs934945 PER2 8864 2 238937053 NM_022817 NP_073728 A/G G1244E minus 1374311 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.18 86 "HapMap,submitter,freq" 2q37.3 period homolog 2 (Drosophila) 8462 rs934945 PER2 8864 2 238937053 NM_022817 NP_073728 A/G G1244E minus 1374311 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.06 86 "HapMap,submitter,freq" 2q37.3 period homolog 2 (Drosophila) 8463 rs934945 PER2 8864 2 238937053 NM_022817 NP_073728 A/G G1244E minus 1374311 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 86 "HapMap,submitter,freq" 2q37.3 period homolog 2 (Drosophila) 8464 rs934945 PER2 8864 2 238937053 NM_022817 NP_073728 A/G G1244E minus 1374311 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 86 "HapMap,submitter,freq" 2q37.3 period homolog 2 (Drosophila) 8465 rs934945 PER2 8864 2 238937053 NM_022817 NP_073728 A/G G1244E minus 1374311 1303 SEQUENOM CEPH CEPH (92) 92 0.25 86 "HapMap,submitter,freq" 2q37.3 period homolog 2 (Drosophila) 8466 rs934996 LTBP2 4053 14 74148291 NM_000428 NP_000419 A/C R37M plus 1374368 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 14q24 latent transforming growth factor beta binding protein 2 8467 rs934996 LTBP2 4053 14 74148291 NM_000428 NP_000419 A/C R37M plus 1374368 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "HapMap,doubleHit,cluster" 14q24 latent transforming growth factor beta binding protein 2 8468 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 1377860 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8469 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 1377860 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.05 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8470 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 1377860 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8471 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 1377860 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.17 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8472 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 1377860 1303 SEQUENOM CEPH CEPH (92) 92 0.23 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8473 rs937838 TGM4 7047 3 44918108 NM_003241 NP_003232 C/G S249T plus 3234747 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.04 100 "by cluster,freq" 3p22-p21.33 transglutaminase 4 (prostate) 8474 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.38 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8475 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.18 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8476 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 58 0.28 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8477 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 318 0.26 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8478 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8479 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8480 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.2 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8481 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8482 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 1379184 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8483 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 2549686 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8484 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 2549686 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8485 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 2549686 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8486 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 2549686 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.29 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8487 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 3172659 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 34 0.26 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8488 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 23814904 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8489 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 23814904 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8490 rs938886 TEP1 7011 14 19907541 NM_007110 NP_009041 C/G I2486M plus 23814904 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq" 14q11.2 telomerase-associated protein 1 8491 rs938952 CILP 8483 15 63276181 NM_003613 NP_003604 C/T G1166S plus 1379268 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 121 "HapMap,doubleHit,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 8492 rs938952 CILP 8483 15 63276181 NM_003613 NP_003604 C/T G1166S plus 1379268 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "HapMap,doubleHit,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 8493 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 1380372 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8494 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 1380372 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.44 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8495 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 3205317 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8496 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 3295808 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8497 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 24644986 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8498 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 24644986 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8499 rs939885 OSTalpha 200931 3 197444072 NM_152672 NP_689885 A/G V202I plus 24644986 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 3q29 organic solute transporter alpha 8500 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 1380968 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8501 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 1380968 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8502 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 4935164 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8503 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 24156949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8504 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 24156949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8505 rs940389 SBLF 11037 2 48719803 NM_006873 NP_006864 C/G R127T plus 24156949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B-like factor 8506 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 1380968 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8507 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 1380968 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8508 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 4935164 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8509 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 24156949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8510 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 24156949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8511 rs940389 SALF 286749 2 48719803 NM_172311 NP_758515 C/G R127T plus 24156949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 8512 rs940570 LYPLAL1 127018 1 215772300 NM_138794 NP_620149 C/T I131M minus 1381175 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by cluster,freq" 1q41 lysophospholipase-like 1 8513 rs940611 HRLP5 117245 11 63013017 NM_054108 NP_473449 C/G A93P plus 10670970 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,doubleHit,submitter,freq,cluster" 11q13.2 H-rev107-like protein 5 8514 rs940611 HRLP5 117245 11 63013017 NM_054108 NP_473449 C/G A93P plus 10670970 1303 SEQUENOM CEPH CEPH (92) 92 0.03 120 "HapMap,doubleHit,submitter,freq,cluster" 11q13.2 H-rev107-like protein 5 8515 rs941590 SERPINA10 51156 14 93826547 NM_016186 NP_057270 A/G K46R minus 1382417 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8516 rs941590 SERPINA10 51156 14 93826547 NM_016186 NP_057270 A/G K46R minus 3220013 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.36 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8517 rs941590 SERPINA10 51156 14 93826547 NM_016186 NP_057270 A/G K46R minus 24607130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8518 rs941590 SERPINA10 51156 14 93826547 NM_016186 NP_057270 A/G K46R minus 24607130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8519 rs941590 SERPINA10 51156 14 93826547 NM_016186 NP_057270 A/G K46R minus 24607130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8520 rs941591 SERPINA10 51156 14 93826503 NM_016186 NP_057270 A/G S61G minus 1382418 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8521 rs941591 SERPINA10 51156 14 93826503 NM_016186 NP_057270 A/G S61G minus 3220014 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.41 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8522 rs941591 SERPINA10 51156 14 93826503 NM_016186 NP_057270 A/G S61G minus 24134341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8523 rs941591 SERPINA10 51156 14 93826503 NM_016186 NP_057270 A/G S61G minus 24134341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8524 rs941591 SERPINA10 51156 14 93826503 NM_016186 NP_057270 A/G S61G minus 24134341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 8525 rs942077 RBM20 282996 10 112585709 XM_291671 XP_291671 C/G E1276Q plus 23516872 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 10q25.3 RNA binding motif protein 20 8526 rs942077 RBM20 282996 10 112585709 XM_291671 XP_291671 C/G E1276Q plus 23516872 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,submitter,freq,cluster" 10q25.3 RNA binding motif protein 20 8527 rs942077 RBM20 282996 10 112585709 XM_291671 XP_291671 C/G E1276Q plus 23516872 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 10q25.3 RNA binding motif protein 20 8528 rs943542 SORBS1 10580 10 97182314 NM_015385 NP_056200 A/G L29P plus 1384706 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "by doubleHit,cluster" 10q23.3-q24.1 sorbin and SH3 domain containing 1 8529 rs943542 SORBS1 10580 10 97182314 NM_015385 NP_056200 A/G L29P plus 1384706 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 "by doubleHit,cluster" 10q23.3-q24.1 sorbin and SH3 domain containing 1 8530 rs943542 SORBS1 10580 10 97182314 NM_015385 NP_056200 A/G L29P plus 1384706 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "by doubleHit,cluster" 10q23.3-q24.1 sorbin and SH3 domain containing 1 8531 rs943542 SORBS1 10580 10 97182314 NM_015385 NP_056200 A/G L29P plus 1384706 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 10q23.3-q24.1 sorbin and SH3 domain containing 1 8532 rs944627 FCRH3 115352 1 154463612 NM_052939 NP_443171 A/G P660L plus 1386029 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1q21-q22 Fc receptor-like protein 3 8533 rs944627 FCRH3 115352 1 154463612 NM_052939 NP_443171 A/G P660L plus 23221573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q21-q22 Fc receptor-like protein 3 8534 rs944627 FCRH3 115352 1 154463612 NM_052939 NP_443171 A/G P660L plus 23221573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by submitter,freq,cluster" 1q21-q22 Fc receptor-like protein 3 8535 rs944627 FCRH3 115352 1 154463612 NM_052939 NP_443171 A/G P660L plus 23221573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 1q21-q22 Fc receptor-like protein 3 8536 rs945508 ARHGEF11 9826 1 153720154 NM_014784 NP_055599 A/G H1427R minus 1387162 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "by doubleHit,freq,cluster" 1q21 Rho guanine nucleotide exchange factor (GEF) 11 8537 rs945508 ARHGEF11 9826 1 153720154 NM_198236 NP_937879 A/G H1467R minus 1387162 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "by doubleHit,freq,cluster" 1q21 Rho guanine nucleotide exchange factor (GEF) 11 8538 rs946616 PYGL 5836 14 50457532 NM_002863 NP_002854 A/G V222I minus 1388584 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 14q21-q22 "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" 8539 rs946616 PYGL 5836 14 50457532 NM_002863 NP_002854 A/G V222I minus 1388584 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,submitter,freq,cluster" 14q21-q22 "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" 8540 rs946616 PYGL 5836 14 50457532 NM_002863 NP_002854 A/G V222I minus 23642436 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 14q21-q22 "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" 8541 rs946616 PYGL 5836 14 50457532 NM_002863 NP_002854 A/G V222I minus 23642436 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 14q21-q22 "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" 8542 rs946616 PYGL 5836 14 50457532 NM_002863 NP_002854 A/G V222I minus 23642436 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 14q21-q22 "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" 8543 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 1390210 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8544 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 1390210 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8545 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 5586573 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8546 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 5586573 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8547 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 5586573 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8548 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 5586573 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8549 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 5586573 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8550 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 12585355 693 EGP_SNPS PDR90 NIHPDR 160 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8551 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 20418308 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8552 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 23600037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8553 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 23600037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8554 rs947894 GSTP1 2950 11 67109265 NM_000852 NP_000843 A/G I105V plus 23600037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 11q13 glutathione S-transferase pi 8555 rs948615 ZNF407 55628 18 70474878 NM_017757 NP_060227 G/T N158T minus 1391313 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 18q23 zinc finger protein 407 8556 rs948615 ZNF407 55628 18 70474878 NM_017757 NP_060227 G/T N158T minus 1391313 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 18q23 zinc finger protein 407 8557 rs948615 ZNF407 55628 18 70474878 NM_017757 NP_060227 G/T N158T minus 1391313 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 18q23 zinc finger protein 407 8558 rs948615 ZNF407 55628 18 70474878 NM_017757 NP_060227 G/T N158T minus 1391313 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 18q23 zinc finger protein 407 8559 rs948615 ZNF407 55628 18 70474878 NM_017757 NP_060227 G/T N158T minus 1391313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 18q23 zinc finger protein 407 8560 rs948962 MYO7A 4647 11 76597126 NM_000260 NP_000251 G/T L1954I minus 1391823 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.15 121 "by doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 8561 rs948962 MYO7A 4647 11 76597126 NM_000260 NP_000251 G/T L1954I minus 1391823 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.28 121 "by doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 8562 rs948962 MYO7A 4647 11 76597126 NM_000260 NP_000251 G/T L1954I minus 1391823 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 6 0.5 121 "by doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 8563 rs949493 STAU2 27067 8 74690550 NM_014393 NP_055208 C/T V166M plus 1392575 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q21.1 "staufen, RNA binding protein, homolog 2 (Drosophila)" 8564 rs949493 STAU2 27067 8 74690550 NM_014393 NP_055208 C/T V166M plus 1392575 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q21.1 "staufen, RNA binding protein, homolog 2 (Drosophila)" 8565 rs949493 STAU2 27067 8 74690550 NM_014393 NP_055208 C/T V166M plus 23545107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q21.1 "staufen, RNA binding protein, homolog 2 (Drosophila)" 8566 rs949493 STAU2 27067 8 74690550 NM_014393 NP_055208 C/T V166M plus 23545107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q21.1 "staufen, RNA binding protein, homolog 2 (Drosophila)" 8567 rs949493 STAU2 27067 8 74690550 NM_014393 NP_055208 C/T V166M plus 23545107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 8q13-q21.1 "staufen, RNA binding protein, homolog 2 (Drosophila)" 8568 rs950169 ADAMTSL3 57188 15 82497465 NM_207517 NP_997400 A/G T1660I minus 1393496 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,submitter,freq" 15q25.2 ADAMTS-like 3 8569 rs950169 ADAMTSL3 57188 15 82497465 NM_207517 NP_997400 A/G T1660I minus 24533500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq" 15q25.2 ADAMTS-like 3 8570 rs950169 ADAMTSL3 57188 15 82497465 NM_207517 NP_997400 A/G T1660I minus 24533500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq" 15q25.2 ADAMTS-like 3 8571 rs950169 ADAMTSL3 57188 15 82497465 NM_207517 NP_997400 A/G T1660I minus 24533500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq" 15q25.2 ADAMTS-like 3 8572 rs951773 KRTHB4 3890 12 51060502 NM_033045 NP_149034 A/G C446R plus 1395645 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 4" 8573 rs951773 KRTHB4 3890 12 51060502 NM_033045 NP_149034 A/G C446R plus 1395645 1303 SEQUENOM CEPH CEPH (92) 92 0.43 120 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 4" 8574 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 1395657 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8575 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 1395657 902 AFFY Caucasian 24 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8576 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 1395657 903 AFFY Asian 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8577 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 1395657 904 AFFY CEPH 6 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8578 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 1395657 905 AFFY PDpanel 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8579 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8580 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 901 AFFY AfAm 40 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8581 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 902 AFFY Caucasian 40 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8582 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 903 AFFY Asian 40 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8583 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 904 AFFY CEPH 44 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8584 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 905 AFFY PDpanel 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8585 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 2824912 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8586 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 24242048 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8587 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 24242048 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8588 rs951781 NES 10763 1 153454610 NM_006617 NP_006608 A/G V815I minus 24242048 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23.1 nestin 8589 rs952374 RAB6IP1 23258 11 9182062 NM_015213 NP_056028 C/G E224Q plus 1396425 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 108 "HapMap,submitter,freq,cluster" 11p15.3 RAB6 interacting protein 1 8590 rs952374 RAB6IP1 23258 11 9182062 NM_015213 NP_056028 C/G E224Q plus 1396425 1303 SEQUENOM CEPH CEPH (92) 92 0.18 108 "HapMap,submitter,freq,cluster" 11p15.3 RAB6 interacting protein 1 8591 rs953778 KCNK4 50801 11 63823575 NM_016611 NP_057695 C/T P354L plus 1398254 1303 SEQUENOM CEPH CEPH (92) 92 0.27 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8592 rs953778 KCNK4 50801 11 63823575 NM_016611 NP_057695 C/T P354L plus 4927405 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8593 rs953778 KCNK4 50801 11 63823575 NM_033310 NP_201567 C/T P328L plus 1398254 1303 SEQUENOM CEPH CEPH (92) 92 0.27 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8594 rs953778 KCNK4 50801 11 63823575 NM_033310 NP_201567 C/T P328L plus 4927405 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8595 rs953778 KCNK4 50801 11 63823575 NM_033311 NP_201568 C/T P328L plus 1398254 1303 SEQUENOM CEPH CEPH (92) 92 0.27 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8596 rs953778 KCNK4 50801 11 63823575 NM_033311 NP_201568 C/T P328L plus 4927405 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 120 "by doubleHit,freq,cluster" 11q13 "potassium channel, subfamily K, member 4" 8597 rs954475 OR2T1 26696 1 244877677 XM_060316 XP_060316 G/T S243A plus 23871711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily T, member 1" 8598 rs954475 OR2T1 26696 1 244877677 XM_060316 XP_060316 G/T S243A plus 23871711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily T, member 1" 8599 rs954475 OR2T1 26696 1 244877677 XM_060316 XP_060316 G/T S243A plus 23871711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily T, member 1" 8600 rs955592 RBM29 84173 2 85507476 NM_032213 NP_115589 C/T T70I plus 1400621 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq" 2p11.2 RNA binding motif protein 29 8601 rs955592 RBM29 84173 2 85507476 NM_032213 NP_115589 C/T T70I plus 1400621 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,submitter,freq" 2p11.2 RNA binding motif protein 29 8602 rs955592 RBM29 84173 2 85507476 NM_032213 NP_115589 C/T T70I plus 24298943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 2p11.2 RNA binding motif protein 29 8603 rs955592 RBM29 84173 2 85507476 NM_032213 NP_115589 C/T T70I plus 24298943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 2p11.2 RNA binding motif protein 29 8604 rs955592 RBM29 84173 2 85507476 NM_032213 NP_115589 C/T T70I plus 24298943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 2p11.2 RNA binding motif protein 29 8605 rs956748 TAF2 6873 8 120813530 NM_003184 NP_003175 C/T T1139A plus 1402079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8606 rs956748 TAF2 6873 8 120813530 NM_003184 NP_003175 C/T T1139A plus 1402079 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8607 rs956748 TAF2 6873 8 120813530 NM_003184 NP_003175 C/T T1139A plus 23390318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8608 rs956748 TAF2 6873 8 120813530 NM_003184 NP_003175 C/T T1139A plus 23390318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8609 rs956748 TAF2 6873 8 120813530 NM_003184 NP_003175 C/T T1139A plus 23390318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8610 rs956749 TAF2 6873 8 120813580 NM_003184 NP_003175 C/T S1122N plus 1402080 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8611 rs956749 TAF2 6873 8 120813580 NM_003184 NP_003175 C/T S1122N plus 1402080 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8612 rs956749 TAF2 6873 8 120813580 NM_003184 NP_003175 C/T S1122N plus 23390327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8613 rs956749 TAF2 6873 8 120813580 NM_003184 NP_003175 C/T S1122N plus 23390327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8614 rs956749 TAF2 6873 8 120813580 NM_003184 NP_003175 C/T S1122N plus 23390327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 8615 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8616 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8617 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8618 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.13 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8619 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8620 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 901 AFFY AfAm 22 0.32 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8621 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 902 AFFY Caucasian 40 0.13 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8622 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 903 AFFY Asian 28 0.25 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8623 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 904 AFFY CEPH 20 0.35 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8624 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 905 AFFY PDpanel 46 0.17 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8625 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 906 AFFY APE 2 1 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8626 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 1402227 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8627 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 23344913 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8628 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 23344913 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8629 rs956868 PRKWNK1 65125 12 861173 NM_018979 NP_061852 A/C T1056P plus 23344913 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 8630 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.36 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8631 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.11 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8632 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8633 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.05 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8634 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8635 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8636 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 172 0.17 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8637 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8638 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 1403276 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8639 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 23750432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8640 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 23750432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8641 rs957680 EFG2 84340 5 74090965 NM_032380 NP_115756 A/G N64S minus 23750432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8642 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.36 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8643 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.11 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8644 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8645 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.05 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8646 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8647 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8648 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 172 0.17 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8649 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8650 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 1403276 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8651 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 23750432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8652 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 23750432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8653 rs957680 EFG2 84340 5 74090965 NM_170681 NP_733781 A/G N64S minus 23750432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8654 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.36 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8655 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.11 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8656 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8657 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.05 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8658 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8659 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8660 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 172 0.17 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8661 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8662 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 1403276 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8663 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 23750432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8664 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 23750432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8665 rs957680 EFG2 84340 5 74090965 NM_170691 NP_733792 A/G N64S minus 23750432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 8666 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.44 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8667 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.2 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8668 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.42 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8669 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 901 AFFY AfAm 20 0.5 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8670 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 902 AFFY Caucasian 40 0.25 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8671 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 903 AFFY Asian 40 0.4 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8672 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 904 AFFY CEPH 56 0.23 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8673 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 905 AFFY PDpanel 48 0.33 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8674 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 1404080 906 AFFY APE 4 1 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8675 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 3197109 738 YUSUKE JBIC-ALLELE Japanese (752) 704 0.32 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8676 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 23614039 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8677 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 23614039 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8678 rs958305 ZNF607 84775 19 42881280 NM_032689 NP_116078 C/T K531R plus 23614039 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 19q13.1 zinc finger protein 607 8679 rs959976 TRPA1 8989 8 73098699 NM_007332 NP_015628 C/T H1018R plus 1406307 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 100 "HapMap,submitter,freq,cluster" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 8680 rs960173 CCL25 6370 19 8024000 NM_005624 NP_005615 C/T T23A minus 23399177 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8681 rs960173 CCL25 6370 19 8024000 NM_005624 NP_005615 C/T T23A minus 23399177 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8682 rs960173 CCL25 6370 19 8024000 NM_005624 NP_005615 C/T T23A minus 23399177 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8683 rs960173 CCL25 6370 19 8024000 NM_148888 NP_683686 C/T T23A minus 23399177 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8684 rs960173 CCL25 6370 19 8024000 NM_148888 NP_683686 C/T T23A minus 23399177 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8685 rs960173 CCL25 6370 19 8024000 NM_148888 NP_683686 C/T T23A minus 23399177 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.2 chemokine (C-C motif) ligand 25 8686 rs960193 OR8K3 219473 11 55842723 XM_166825 XP_166825 A/C L122R minus 24568178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 8687 rs960193 OR8K3 219473 11 55842723 XM_166825 XP_166825 A/C L122R minus 24568178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 8688 rs960193 OR8K3 219473 11 55842723 XM_166825 XP_166825 A/C L122R minus 24568178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 8689 rs961098 ANKRD31 256006 5 74436142 XM_293911 XP_293911 C/G D1194E minus 1407847 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 86 "HapMap,freq" 5q13.3 ankyrin repeat domain 31 8690 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8691 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 901 AFFY AfAm 40 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8692 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 902 AFFY Caucasian 40 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8693 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 903 AFFY Asian 40 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8694 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 904 AFFY CEPH 54 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8695 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 905 AFFY PDpanel 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8696 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 1408202 906 AFFY APE 4 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8697 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 3252288 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8698 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 23874392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8699 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 23874392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8700 rs961360 R3HDM 23518 2 136227390 NM_015361 NP_056176 C/T M270V minus 23874392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 8701 rs961490 CDC42BPA 8476 1 223525811 NM_003607 NP_003598 C/T R1198H plus 1408357 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8702 rs961490 CDC42BPA 8476 1 223525811 NM_003607 NP_003598 C/T R1198H plus 23861190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8703 rs961490 CDC42BPA 8476 1 223525811 NM_003607 NP_003598 C/T R1198H plus 23861190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8704 rs961490 CDC42BPA 8476 1 223525811 NM_003607 NP_003598 C/T R1198H plus 23861190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8705 rs961490 CDC42BPA 8476 1 223525811 NM_014826 NP_055641 C/T R1117H plus 1408357 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8706 rs961490 CDC42BPA 8476 1 223525811 NM_014826 NP_055641 C/T R1117H plus 23861190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8707 rs961490 CDC42BPA 8476 1 223525811 NM_014826 NP_055641 C/T R1117H plus 23861190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8708 rs961490 CDC42BPA 8476 1 223525811 NM_014826 NP_055641 C/T R1117H plus 23861190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 8709 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8710 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 901 AFFY AfAm 12 0.17 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8711 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 902 AFFY Caucasian 22 0.27 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8712 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 903 AFFY Asian 12 0.33 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8713 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 904 AFFY CEPH 12 1 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8714 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 905 AFFY PDpanel 48 0.29 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8715 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 1410342 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8716 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 24137553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8717 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 24137553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8718 rs962976 MDM1 56890 12 67006894 NM_017440 NP_059136 A/G T103I plus 24137553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8719 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8720 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 901 AFFY AfAm 12 0.17 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8721 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 902 AFFY Caucasian 22 0.27 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8722 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 903 AFFY Asian 12 0.33 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8723 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 904 AFFY CEPH 12 1 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8724 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 905 AFFY PDpanel 48 0.29 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8725 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 1410342 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8726 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 24137553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8727 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 24137553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8728 rs962976 MDM1 56890 12 67006894 NM_020128 NP_064513 A/G T103I plus 24137553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,submitter,freq,cluster" 12q14.3 nuclear protein double minute 1 8729 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 86 0.21 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8730 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8731 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.41 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8732 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8733 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.23 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8734 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8735 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 1410472 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8736 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 3250084 738 YUSUKE JBIC-ALLELE Japanese (752) 1430 0.36 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8737 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 24058834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8738 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 24058834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8739 rs963075 SERPINB10 5273 18 59751364 NM_005024 NP_005015 A/G R246C minus 24058834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 8740 rs964201 ASPM 259266 1 193802558 NM_018136 NP_060606 A/G Y2494H plus 1411995 1303 SEQUENOM CEPH CEPH (92) 92 0.02 116 "by doubleHit,freq,cluster" 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 8741 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8742 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 901 AFFY AfAm 12 0.17 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8743 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 902 AFFY Caucasian 24 0.38 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8744 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 903 AFFY Asian 12 0.42 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8745 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 904 AFFY CEPH 5 0.5 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8746 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 1412128 905 AFFY PDpanel 40 0.48 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8747 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 24083373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8748 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 24083373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8749 rs964307 PKHD1L1 93035 8 110482938 NM_177531 NP_803875 A/G Y440H minus 24083373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 8750 rs966185 DDEF1 50807 8 131193741 NM_018482 NP_060952 A/G I728V minus 1414636 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 development and differentiation enhancing factor 1 8751 rs966185 DDEF1 50807 8 131193741 NM_018482 NP_060952 A/G I728V minus 3232321 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 development and differentiation enhancing factor 1 8752 rs966185 DDEF1 50807 8 131193741 NM_018482 NP_060952 A/G I728V minus 24520386 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 development and differentiation enhancing factor 1 8753 rs966185 DDEF1 50807 8 131193741 NM_018482 NP_060952 A/G I728V minus 24520386 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 development and differentiation enhancing factor 1 8754 rs966185 DDEF1 50807 8 131193741 NM_018482 NP_060952 A/G I728V minus 24520386 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 development and differentiation enhancing factor 1 8755 rs966365 EDARADD 128178 1 232883812 NM_145861 NP_665860 C/T M9I minus 1414869 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 56 0.41 86 "HapMap,doubleHit,submitter,freq" 1q42.3 EDAR-associated death domain 8756 rs966365 EDARADD 128178 1 232883812 NM_145861 NP_665860 C/T M9I minus 1414869 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 56 0.05 86 "HapMap,doubleHit,submitter,freq" 1q42.3 EDAR-associated death domain 8757 rs966365 EDARADD 128178 1 232883812 NM_145861 NP_665860 C/T M9I minus 1414869 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 58 0.07 86 "HapMap,doubleHit,submitter,freq" 1q42.3 EDAR-associated death domain 8758 rs966365 EDARADD 128178 1 232883812 NM_145861 NP_665860 C/T M9I minus 1414869 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 322 0.16 86 "HapMap,doubleHit,submitter,freq" 1q42.3 EDAR-associated death domain 8759 rs966365 EDARADD 128178 1 232883812 NM_145861 NP_665860 C/T M9I minus 1414869 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 86 "HapMap,doubleHit,submitter,freq" 1q42.3 EDAR-associated death domain 8760 rs966384 LRG1 116844 19 4489599 NM_052972 NP_443204 C/T P133S minus 1414890 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 121 "HapMap,doubleHit,freq" 19p13.3 leucine-rich alpha-2-glycoprotein 1 8761 rs967185 EIF3S10 8661 10 120810797 NM_003750 NP_003741 C/T E386K plus 1415941 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 86 by freq 10q26 "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 8762 rs967185 EIF3S10 8661 10 120810797 NM_003750 NP_003741 C/T E386K plus 1415941 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.14 86 by freq 10q26 "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 8763 rs967185 EIF3S10 8661 10 120810797 NM_003750 NP_003741 C/T E386K plus 1415941 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.08 86 by freq 10q26 "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 8764 rs967185 EIF3S10 8661 10 120810797 NM_003750 NP_003741 C/T E386K plus 1415941 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 10q26 "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa" 8765 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.09 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8766 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8767 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8768 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.04 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8769 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8770 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 1416920 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8771 rs967935 ABCC3 8714 17 46110387 NM_020037 NP_064421 C/T S1221F plus 16339748 1145 PHARMGKB_PMT PA129412216 552 0.11 120 "HapMap,doubleHit,submitter,freq,cluster" 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 8772 rs968457 IRF3 3661 19 54858462 NM_001571 NP_001562 A/G R96Q minus 1417615 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 19q13.3-q13.4 interferon regulatory factor 3 8773 rs968457 IRF3 3661 19 54858462 NM_001571 NP_001562 A/G R96Q minus 3177821 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.06 123 by freq 19q13.3-q13.4 interferon regulatory factor 3 8774 rs968502 PRAM-1 84106 19 8473475 NM_032152 NP_115528 A/G M1V minus 23583629 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19p13.3 PRAM-1 protein 8775 rs968502 PRAM-1 84106 19 8473475 NM_032152 NP_115528 A/G M1V minus 23583629 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19p13.3 PRAM-1 protein 8776 rs968502 PRAM-1 84106 19 8473475 NM_032152 NP_115528 A/G M1V minus 23583629 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 19p13.3 PRAM-1 protein 8777 rs968566 GJA3 2700 13 19614533 NM_021954 NP_068773 A/C L299M minus 1417752 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 13q11-q12 "gap junction protein, alpha 3, 46kDa (connexin 46)" 8778 rs968566 GJA3 2700 13 19614533 NM_021954 NP_068773 A/C L299M minus 23435542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q11-q12 "gap junction protein, alpha 3, 46kDa (connexin 46)" 8779 rs968566 GJA3 2700 13 19614533 NM_021954 NP_068773 A/C L299M minus 23435542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 13q11-q12 "gap junction protein, alpha 3, 46kDa (connexin 46)" 8780 rs968566 GJA3 2700 13 19614533 NM_021954 NP_068773 A/C L299M minus 23435542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q11-q12 "gap junction protein, alpha 3, 46kDa (connexin 46)" 8781 rs968733 MAN1B1 11253 9 137257464 NM_007230 NP_009161 A/G N23S plus 1417962 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8782 rs968733 MAN1B1 11253 9 137257464 NM_007230 NP_009161 A/G N23S plus 23265935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8783 rs968733 MAN1B1 11253 9 137257464 NM_007230 NP_009161 A/G N23S plus 23265935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8784 rs968733 MAN1B1 11253 9 137257464 NM_007230 NP_009161 A/G N23S plus 23265935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8785 rs968733 MAN1B1 11253 9 137257464 NM_016219 NP_057303 A/G N59S plus 1417962 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8786 rs968733 MAN1B1 11253 9 137257464 NM_016219 NP_057303 A/G N59S plus 23265935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8787 rs968733 MAN1B1 11253 9 137257464 NM_016219 NP_057303 A/G N59S plus 23265935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8788 rs968733 MAN1B1 11253 9 137257464 NM_016219 NP_057303 A/G N59S plus 23265935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 9q34 "mannosidase, alpha, class 1B, member 1" 8789 rs970547 COL12A1 1303 6 75854022 NM_004370 NP_004361 A/G G3058S minus 1420373 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8790 rs970547 COL12A1 1303 6 75854022 NM_004370 NP_004361 A/G G3058S minus 5004554 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.35 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8791 rs970547 COL12A1 1303 6 75854022 NM_004370 NP_004361 A/G G3058S minus 23762661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8792 rs970547 COL12A1 1303 6 75854022 NM_004370 NP_004361 A/G G3058S minus 23762661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8793 rs970547 COL12A1 1303 6 75854022 NM_004370 NP_004361 A/G G3058S minus 23762661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8794 rs970547 COL12A1 1303 6 75854022 NM_080645 NP_542376 A/G G1894S minus 1420373 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8795 rs970547 COL12A1 1303 6 75854022 NM_080645 NP_542376 A/G G1894S minus 5004554 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.35 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8796 rs970547 COL12A1 1303 6 75854022 NM_080645 NP_542376 A/G G1894S minus 23762661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8797 rs970547 COL12A1 1303 6 75854022 NM_080645 NP_542376 A/G G1894S minus 23762661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8798 rs970547 COL12A1 1303 6 75854022 NM_080645 NP_542376 A/G G1894S minus 23762661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XII, alpha 1" 8799 rs974963 RPP21 79897 6 30422546 NM_024839 NP_079115 G/T Q149K minus 7900880 1303 SEQUENOM CEPH CEPH (92) 92 1 119 by doubleHit 6p21.32 ribonuclease P 21kDa subunit 8800 rs975263 7A5 346389 7 19971680 NM_182762 NP_877439 C/T S515L minus 1426620 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15.3 putative binding protein 7a5 8801 rs975263 7A5 346389 7 19971680 NM_182762 NP_877439 C/T S515L minus 23706126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15.3 putative binding protein 7a5 8802 rs975263 7A5 346389 7 19971680 NM_182762 NP_877439 C/T S515L minus 23706126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15.3 putative binding protein 7a5 8803 rs975263 7A5 346389 7 19971680 NM_182762 NP_877439 C/T S515L minus 23706126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 7p15.3 putative binding protein 7a5 8804 rs976272 SLC38A6 145389 14 60519081 NM_153811 NP_722518 A/T L70M minus 1427962 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 14q23.1 "solute carrier family 38, member 6" 8805 rs976272 SLC38A6 145389 14 60519081 NM_153811 NP_722518 A/T L70M minus 3241182 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.32 123 "by doubleHit,submitter,freq,cluster" 14q23.1 "solute carrier family 38, member 6" 8806 rs976272 SLC38A6 145389 14 60519081 NM_153811 NP_722518 A/T L70M minus 24141186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 14q23.1 "solute carrier family 38, member 6" 8807 rs976272 SLC38A6 145389 14 60519081 NM_153811 NP_722518 A/T L70M minus 24141186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 14q23.1 "solute carrier family 38, member 6" 8808 rs976272 SLC38A6 145389 14 60519081 NM_153811 NP_722518 A/T L70M minus 24141186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 14q23.1 "solute carrier family 38, member 6" 8809 rs976714 PCLO 27445 7 82226510 XM_168530 XP_168530 C/T A1620T plus 1428575 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 8810 rs976714 PCLO 27445 7 82226510 XM_168530 XP_168530 C/T A1620T plus 1428575 1303 SEQUENOM CEPH CEPH (92) 92 0.39 121 "HapMap,doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 8811 rs976714 PCLO 27445 7 82226510 XM_168530 XP_168530 C/T A1620T plus 2986071 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.49 121 "HapMap,doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 8812 rs978012 SLC36A3 285641 5 150647209 NM_181774 NP_861439 A/G K167E minus 1430354 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 8813 rs978012 SLC36A3 285641 5 150647209 NM_181774 NP_861439 A/G K167E minus 24198167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 8814 rs978012 SLC36A3 285641 5 150647209 NM_181774 NP_861439 A/G K167E minus 24198167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 8815 rs978012 SLC36A3 285641 5 150647209 NM_181774 NP_861439 A/G K167E minus 24198167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 8816 rs981684 KRT25C 342574 17 36189338 NM_181537 NP_853515 A/G I305T plus 1435215 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 25C 8817 rs981684 KRT25C 342574 17 36189338 NM_181537 NP_853515 A/G I305T plus 24559641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 25C 8818 rs981684 KRT25C 342574 17 36189338 NM_181537 NP_853515 A/G I305T plus 24559641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 25C 8819 rs981684 KRT25C 342574 17 36189338 NM_181537 NP_853515 A/G I305T plus 24559641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 17q21.2 keratin 25C 8820 rs984274 DCC 1630 18 49190933 NM_005215 NP_005206 C/T M1017V minus 1438648 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 8821 rs984274 DCC 1630 18 49190933 NM_005215 NP_005206 C/T M1017V minus 3176064 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.06 123 "HapMap,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 8822 rs984274 DCC 1630 18 49190933 NM_005215 NP_005206 C/T M1017V minus 23584330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 8823 rs984274 DCC 1630 18 49190933 NM_005215 NP_005206 C/T M1017V minus 23584330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "HapMap,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 8824 rs984274 DCC 1630 18 49190933 NM_005215 NP_005206 C/T M1017V minus 23584330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 8825 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 1444359 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8826 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 1444359 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8827 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 3228535 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.2 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8828 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 23403789 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8829 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 23403789 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8830 rs988574 ITGA1 3672 5 52276567 NM_181501 NP_852478 A/G E1108G plus 23403789 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 8831 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 1446124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8832 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 1446124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8833 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 1446124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8834 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 1446124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.44 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8835 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 1446124 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8836 rs989902 PTPN13 5783 4 88063685 NM_006264 NP_006255 A/C Y2062D minus 3177745 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.36 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8837 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 1446124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8838 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 1446124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8839 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 1446124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8840 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 1446124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.44 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8841 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 1446124 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8842 rs989902 PTPN13 5783 4 88063685 NM_080683 NP_542414 A/C Y2081D minus 3177745 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.36 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8843 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 1446124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8844 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 1446124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8845 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 1446124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8846 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 1446124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.44 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8847 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 1446124 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8848 rs989902 PTPN13 5783 4 88063685 NM_080684 NP_542415 A/C Y1890D minus 3177745 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.36 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8849 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 1446124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8850 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 1446124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8851 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 1446124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8852 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 1446124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.44 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8853 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 1446124 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8854 rs989902 PTPN13 5783 4 88063685 NM_080685 NP_542416 A/C Y2086D minus 3177745 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.36 111 "HapMap,doubleHit,submitter,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 8855 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 771 TSC-CSHL SC_12_A CORIELL Asian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8856 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8857 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8858 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8859 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8860 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 1456739 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8861 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 24598816 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8862 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 24598816 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8863 rs997983 MKI67 4288 10 129800465 NM_002417 NP_002408 A/C I631L minus 24598816 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 8864 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 1457444 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.27 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8865 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 1457444 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.45 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8866 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 1457444 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8867 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 24265327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8868 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 24265327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8869 rs998532 TTF2 8458 1 117329747 NM_003594 NP_003585 A/G K167E plus 24265327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1p22 "transcription termination factor, RNA polymerase II" 8870 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 1457462 638 TSC-CSHL TSC_42_AA TSC African American (42) 72 0.28 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8871 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 1457462 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 74 0.31 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8872 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 1457462 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.31 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8873 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 24103839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8874 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 24103839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8875 rs998544 OR5R1 219479 11 55941464 XM_166831 XP_166831 C/T A274V minus 24103839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 8876 rs999409 UBCE7IP5 22888 20 3050998 NM_014948 NP_055763 A/G T96M plus 1458779 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8877 rs999409 UBCE7IP5 22888 20 3050998 NM_014948 NP_055763 A/G T96M plus 1458779 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8878 rs999409 UBCE7IP5 22888 20 3050998 NM_014948 NP_055763 A/G T96M plus 1458779 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8879 rs999409 UBCE7IP5 22888 20 3050998 NM_014948 NP_055763 A/G T96M plus 1458779 1303 SEQUENOM CEPH CEPH (92) 92 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8880 rs999409 UBCE7IP5 22888 20 3050998 NM_199415 NP_955447 A/G T96M plus 1458779 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8881 rs999409 UBCE7IP5 22888 20 3050998 NM_199415 NP_955447 A/G T96M plus 1458779 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8882 rs999409 UBCE7IP5 22888 20 3050998 NM_199415 NP_955447 A/G T96M plus 1458779 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8883 rs999409 UBCE7IP5 22888 20 3050998 NM_199415 NP_955447 A/G T96M plus 1458779 1303 SEQUENOM CEPH CEPH (92) 92 1 114 "by doubleHit,submitter,freq" 20p13 likely ortholog of mouse ubiquitin conjugating enzyme 7 interacting protein 5 8884 rs999597 KRTAP13-4 284827 21 30724925 NM_181600 NP_853631 C/T R154H minus 1459029 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.02 86 "HapMap,freq" 21q22.1 keratin associated protein 13-4 8885 rs999597 KRTAP13-4 284827 21 30724925 NM_181600 NP_853631 C/T R154H minus 1459029 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 86 "HapMap,freq" 21q22.1 keratin associated protein 13-4 8886 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 1459261 638 TSC-CSHL TSC_42_AA TSC African American (42) 80 0.11 123 "by doubleHit,freq" 1p36.11 EphA8 8887 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 1459261 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.1 123 "by doubleHit,freq" 1p36.11 EphA8 8888 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 1459261 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 123 "by doubleHit,freq" 1p36.11 EphA8 8889 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 1459261 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,freq" 1p36.11 EphA8 8890 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 23181480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq" 1p36.11 EphA8 8891 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 23181480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 1p36.11 EphA8 8892 rs999765 EPHA8 2046 1 22669179 NM_020526 NP_065387 C/G E612Q minus 23181480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 1p36.11 EphA8 8893 rs999890 PIP5K3 200576 2 209016138 NM_015040 NP_055855 G/T S1033A plus 23215775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8894 rs999890 PIP5K3 200576 2 209016138 NM_015040 NP_055855 G/T S1033A plus 23215775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8895 rs999890 PIP5K3 200576 2 209016138 NM_015040 NP_055855 G/T S1033A plus 23215775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8896 rs999890 PIP5K3 200576 2 209016138 NM_015040 NP_055855 G/T S1033A plus 24795931 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 "by doubleHit,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 8897 rs999940 SLC29A3 55315 10 72792298 NM_018344 NP_060814 A/T V452E plus 1459491 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 86 by freq 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 8898 rs999940 SLC29A3 55315 10 72792298 NM_018344 NP_060814 A/T V452E plus 1459491 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.15 86 by freq 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 8899 rs999940 SLC29A3 55315 10 72792298 NM_018344 NP_060814 A/T V452E plus 1459491 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.08 86 by freq 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 8900 rs999940 SLC29A3 55315 10 72792298 NM_018344 NP_060814 A/T V452E plus 1459491 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 1 86 by freq 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 8901 rs999940 SLC29A3 55315 10 72792298 NM_018344 NP_060814 A/T V452E plus 1459491 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 8902 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 96 0.36 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8903 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 768 TSC-CSHL WICGR3_AFRICAN_AMERICAN WICGR African-American (50) 98 0.14 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8904 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 769 TSC-CSHL WICGR4_ASIAN WICGR Asian (42) 84 0.06 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8905 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.02 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8906 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.33 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8907 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 1461033 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8908 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 24676664 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8909 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 24676664 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8910 rs1000952 HTR3D 200909 3 185238524 NM_182537 NP_872343 C/T R52H minus 24676664 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 3q27.3 5-hydroxytryptamine receptor 3 subunit D 8911 rs1001178 B3GNT4 79369 12 121215925 NM_030765 NP_110392 A/T S83T minus 1461413 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 12q24 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4" 8912 rs1003645 CCL23 6368 17 31364397 NM_005064 NP_005055 A/G V123M minus 113891 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8913 rs1003645 CCL23 6368 17 31364397 NM_005064 NP_005055 A/G V123M minus 113891 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8914 rs1003645 CCL23 6368 17 31364397 NM_005064 NP_005055 A/G V123M minus 2893566 638 TSC-CSHL TSC_42_AA TSC African American (42) 72 0.19 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8915 rs1003645 CCL23 6368 17 31364397 NM_005064 NP_005055 A/G V123M minus 2893566 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 39 0.5 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8916 rs1003645 CCL23 6368 17 31364397 NM_005064 NP_005055 A/G V123M minus 2893566 640 TSC-CSHL TSC_42_A TSC Asian (42) 81 0.43 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8917 rs1003645 CCL23 6368 17 31364397 NM_145898 NP_665905 A/G V106M minus 113891 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8918 rs1003645 CCL23 6368 17 31364397 NM_145898 NP_665905 A/G V106M minus 113891 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8919 rs1003645 CCL23 6368 17 31364397 NM_145898 NP_665905 A/G V106M minus 2893566 638 TSC-CSHL TSC_42_AA TSC African American (42) 72 0.19 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8920 rs1003645 CCL23 6368 17 31364397 NM_145898 NP_665905 A/G V106M minus 2893566 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 39 0.5 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8921 rs1003645 CCL23 6368 17 31364397 NM_145898 NP_665905 A/G V106M minus 2893566 640 TSC-CSHL TSC_42_A TSC Asian (42) 81 0.43 121 "HapMap,doubleHit,freq,cluster" 17q21.1 chemokine (C-C motif) ligand 23 8922 rs1004041 TPSG1 25823 16 1211891 NM_012467 NP_036599 A/C F288L minus 1465449 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,freq,cluster" 16p13.3 tryptase gamma 1 8923 rs1004041 TPSG1 25823 16 1211891 NM_012467 NP_036599 A/C F288L minus 24400155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 16p13.3 tryptase gamma 1 8924 rs1004041 TPSG1 25823 16 1211891 NM_012467 NP_036599 A/C F288L minus 24400155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 16p13.3 tryptase gamma 1 8925 rs1004041 TPSG1 25823 16 1211891 NM_012467 NP_036599 A/C F288L minus 24400155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 16p13.3 tryptase gamma 1 8926 rs1004588 DGKG 1608 3 187489320 NM_001346 NP_001337 C/G T142S minus 1466101 1303 SEQUENOM CEPH CEPH (92) 92 0.48 102 "by doubleHit,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 8927 rs1004588 DGKG 1608 3 187489320 NM_001346 NP_001337 C/G T142S minus 3175901 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.19 102 "by doubleHit,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 8928 rs1004588 DGKG 1608 3 187489320 NM_001346 NP_001337 C/G T142S minus 3194909 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.34 102 "by doubleHit,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 8929 rs1006459 REM1 28954 20 29527992 NM_014012 NP_054731 A/G H28R plus 1468368 1303 SEQUENOM CEPH CEPH (92) 92 0.17 116 "by doubleHit,freq,cluster" 20q11.21 RAS (RAD and GEM)-like GTP-binding 1 8930 rs1006954 ZZEF1 23140 17 3894282 NM_015113 NP_055928 C/T P2051S minus 1468959 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 120 "HapMap,doubleHit,submitter,freq" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 8931 rs1006954 ZZEF1 23140 17 3894282 NM_015113 NP_055928 C/T P2051S minus 1468959 1303 SEQUENOM CEPH CEPH (92) 92 0.29 120 "HapMap,doubleHit,submitter,freq" 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 8932 rs1007160 SLC7A9 11136 19 38044901 NM_014270 NP_055085 A/C L223M minus 1469194 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 111 "HapMap,submitter,freq,cluster" 19q13.1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 9" 8933 rs1007160 SLC7A9 11136 19 38044901 NM_014270 NP_055085 A/C L223M minus 1469194 1303 SEQUENOM CEPH CEPH (92) 92 0.25 111 "HapMap,submitter,freq,cluster" 19q13.1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 9" 8934 rs1007211 NTRK1 4914 1 153643852 NM_002529 NP_002520 A/G G18E plus 1469256 1303 SEQUENOM CEPH CEPH (92) 92 0.08 86 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 8935 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 762 TSC-CSHL MOT_AFRICAN_AMERICAN MOTOROLA African-American (30) 60 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8936 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 763 TSC-CSHL MOT_ASIAN MOTOROLA Asian (30) 56 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8937 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 764 TSC-CSHL MOT_CAUCASIAN MOTOROLA Caucasian (30) 60 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8938 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 765 TSC-CSHL MOT_CAUCASIAN_CEPH MOTOROLA CEPH Caucasians (637) 308 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8939 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8940 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 1469358 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8941 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 24090003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8942 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 24090003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8943 rs1007298 Rgr 266747 22 22363401 NM_153615 NP_705843 C/T V378A plus 24090003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 8944 rs1008265 TSSC4 10078 11 2380810 NM_005706 NP_005697 A/G R124Q plus 1470529 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by doubleHit 11p15.5 tumor suppressing subtransferable candidate 4 8945 rs1009382 TNXB 7148 6 32134085 NM_019105 NP_061978 A/G G2578E minus 1471878 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 119 "HapMap,doubleHit,freq,cluster" 6p21.3 tenascin XB 8946 rs1009382 TNXB 7148 6 32134085 NM_019105 NP_061978 A/G G2578E minus 1471878 1303 SEQUENOM CEPH CEPH (92) 92 0.3 119 "HapMap,doubleHit,freq,cluster" 6p21.3 tenascin XB 8947 rs1009382 TNXB 7148 6 32134085 NM_019105 NP_061978 A/G G2578E minus 3225019 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.32 119 "HapMap,doubleHit,freq,cluster" 6p21.3 tenascin XB 8948 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.05 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8949 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 58 0.02 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8950 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.05 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8951 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8952 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 1 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8953 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8954 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8955 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 1474167 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8956 rs1011320 PIK3R2 5296 19 18134047 NM_005027 NP_005018 C/T S313P plus 3177906 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.08 121 "HapMap,doubleHit,freq,cluster" 19q13.2-q13.4 "phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta)" 8957 rs1013860 SVIL 6840 10 29861848 NM_021738 NP_068506 G/T V485G minus 1477138 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 1 86 HapMap 10p11.2 supervillin 8958 rs1013860 SVIL 6840 10 29861848 NM_021738 NP_068506 G/T V485G minus 1477138 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 10p11.2 supervillin 8959 rs1013860 SVIL 6840 10 29861848 NM_021738 NP_068506 G/T V485G minus 1477138 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 10p11.2 supervillin 8960 rs1013940 SLC5A7 60482 2 108067166 NM_021815 NP_068587 C/T I89V minus 1477235 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 2q12 "solute carrier family 5 (choline transporter), member 7" 8961 rs1013940 SLC5A7 60482 2 108067166 NM_021815 NP_068587 C/T I89V minus 1477235 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,submitter,freq,cluster" 2q12 "solute carrier family 5 (choline transporter), member 7" 8962 rs1013940 SLC5A7 60482 2 108067166 NM_021815 NP_068587 C/T I89V minus 24142953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 2q12 "solute carrier family 5 (choline transporter), member 7" 8963 rs1013940 SLC5A7 60482 2 108067166 NM_021815 NP_068587 C/T I89V minus 24142953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 2q12 "solute carrier family 5 (choline transporter), member 7" 8964 rs1013940 SLC5A7 60482 2 108067166 NM_021815 NP_068587 C/T I89V minus 24142953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 2q12 "solute carrier family 5 (choline transporter), member 7" 8965 rs1014867 FATJ 79633 4 126770496 NM_024582 NP_078858 C/T P3213S plus 1478323 1303 SEQUENOM CEPH CEPH (92) 92 0.1 121 "by doubleHit,freq" 4q28.1 fat-like cadherin FATJ 8966 rs1016862 MC4R 4160 18 56190057 NM_005912 NP_005903 G/T I169S minus 1480686 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 HapMap 18q22 melanocortin 4 receptor 8967 rs1016862 MC4R 4160 18 56190057 NM_005912 NP_005903 G/T I169S minus 1480686 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 HapMap 18q22 melanocortin 4 receptor 8968 rs1016862 MC4R 4160 18 56190057 NM_005912 NP_005903 G/T I169S minus 1480686 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 HapMap 18q22 melanocortin 4 receptor 8969 rs1016862 MC4R 4160 18 56190057 NM_005912 NP_005903 G/T I169S minus 1480686 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 18q22 melanocortin 4 receptor 8970 rs1016862 MC4R 4160 18 56190057 NM_005912 NP_005903 G/T I169S minus 1480686 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 18q22 melanocortin 4 receptor 8971 rs1017219 KCNA7 3743 19 54265250 NM_031886 NP_114092 A/G M418T plus 1481085 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,submitter,freq,cluster" 19q13.3 "potassium voltage-gated channel, shaker-related subfamily, member 7" 8972 rs1017219 KCNA7 3743 19 54265250 NM_031886 NP_114092 A/G M418T plus 23812958 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 19q13.3 "potassium voltage-gated channel, shaker-related subfamily, member 7" 8973 rs1017219 KCNA7 3743 19 54265250 NM_031886 NP_114092 A/G M418T plus 23812958 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,submitter,freq,cluster" 19q13.3 "potassium voltage-gated channel, shaker-related subfamily, member 7" 8974 rs1017219 KCNA7 3743 19 54265250 NM_031886 NP_114092 A/G M418T plus 23812958 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 19q13.3 "potassium voltage-gated channel, shaker-related subfamily, member 7" 8975 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 1481775 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8976 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 1481775 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8977 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 1481775 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8978 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 1481775 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8979 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 23454880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8980 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 23454880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8981 rs1017842 BUB1B 701 15 38276149 NM_001211 NP_001202 C/G E390D minus 23454880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 8982 rs1018448 ARFGAP3 26286 22 41531448 NM_014570 NP_055385 A/C S355R plus 24550315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by submitter,freq,cluster" 22q13.2-q13.3 ADP-ribosylation factor GTPase activating protein 3 8983 rs1018448 ARFGAP3 26286 22 41531448 NM_014570 NP_055385 A/C S355R plus 24550315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 22q13.2-q13.3 ADP-ribosylation factor GTPase activating protein 3 8984 rs1018448 ARFGAP3 26286 22 41531448 NM_014570 NP_055385 A/C S355R plus 24550315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 22q13.2-q13.3 ADP-ribosylation factor GTPase activating protein 3 8985 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 901 AFFY AfAm 40 0.1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8986 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 902 AFFY Caucasian 38 0.39 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8987 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 903 AFFY Asian 40 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8988 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 904 AFFY CEPH 44 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8989 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 905 AFFY PDpanel 48 0.23 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8990 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 906 AFFY APE 4 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8991 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 1483838 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8992 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 24566741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8993 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 24566741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8994 rs1019670 MS4A6A 64231 11 59697175 NM_022349 NP_071744 A/T T185S minus 24566741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8995 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 901 AFFY AfAm 40 0.1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8996 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 902 AFFY Caucasian 38 0.39 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8997 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 903 AFFY Asian 40 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8998 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 904 AFFY CEPH 44 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 8999 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 905 AFFY PDpanel 48 0.23 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9000 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 906 AFFY APE 4 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9001 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 1483838 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9002 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 24566741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9003 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 24566741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9004 rs1019670 MS4A6A 64231 11 59697175 NM_152851 NP_690590 A/T N150I minus 24566741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9005 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 901 AFFY AfAm 40 0.1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9006 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 902 AFFY Caucasian 38 0.39 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9007 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 903 AFFY Asian 40 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9008 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 904 AFFY CEPH 44 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9009 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 905 AFFY PDpanel 48 0.23 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9010 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 906 AFFY APE 4 1 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9011 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 1483838 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9012 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 24566741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9013 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 24566741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9014 rs1019670 MS4A6A 64231 11 59697175 NM_152852 NP_690591 A/T T185S minus 24566741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 11q12.1 "membrane-spanning 4-domains, subfamily A, member 6A" 9015 rs1019747 ADAMTS16 170690 5 5199377 NM_139056 NP_620687 C/T S104P plus 23882756 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 9016 rs1019747 ADAMTS16 170690 5 5199377 NM_139056 NP_620687 C/T S104P plus 23882756 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 9017 rs1019747 ADAMTS16 170690 5 5199377 NM_139056 NP_620687 C/T S104P plus 23882756 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 9018 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9019 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9020 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9021 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9022 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9023 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 1484999 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9024 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 24494086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9025 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 24494086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9026 rs1020694 SERPINB13 5275 18 59415278 NM_012397 NP_036529 C/T G293S minus 24494086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3-q22 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13" 9027 rs1021737 CTH 1491 1 70616821 NM_001902 NP_001893 G/T S403I plus 24256154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9028 rs1021737 CTH 1491 1 70616821 NM_001902 NP_001893 G/T S403I plus 24256154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9029 rs1021737 CTH 1491 1 70616821 NM_001902 NP_001893 G/T S403I plus 24256154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9030 rs1021737 CTH 1491 1 70616821 NM_153742 NP_714964 G/T S359I plus 24256154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9031 rs1021737 CTH 1491 1 70616821 NM_153742 NP_714964 G/T S359I plus 24256154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9032 rs1021737 CTH 1491 1 70616821 NM_153742 NP_714964 G/T S359I plus 24256154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq" 1p31.1 cystathionase (cystathionine gamma-lyase) 9033 rs1023000 FNBP1 23048 9 129742340 NM_015033 NP_055848 C/T S490N plus 3241016 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.28 123 "by cluster,freq" 9q34 formin binding protein 1 9034 rs1023000 FNBP1 23048 9 129742340 NM_015033 NP_055848 C/T S490N plus 23585919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "by cluster,freq" 9q34 formin binding protein 1 9035 rs1023000 FNBP1 23048 9 129742340 NM_015033 NP_055848 C/T S490N plus 23585919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.44 123 "by cluster,freq" 9q34 formin binding protein 1 9036 rs1023000 FNBP1 23048 9 129742340 NM_015033 NP_055848 C/T S490N plus 23585919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by cluster,freq" 9q34 formin binding protein 1 9037 rs1023783 LASS3 204219 15 98760568 NM_178842 NP_849164 C/T D342G plus 1488440 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 by freq 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 9038 rs1023783 LASS3 204219 15 98760568 NM_178842 NP_849164 C/T D342G plus 24594334 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 9039 rs1023783 LASS3 204219 15 98760568 NM_178842 NP_849164 C/T D342G plus 24594334 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 9040 rs1023783 LASS3 204219 15 98760568 NM_178842 NP_849164 C/T D342G plus 24594334 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 9041 rs1024196 DST 667 6 56615448 NM_001723 NP_001714 A/G L33S plus 1488895 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9042 rs1024196 DST 667 6 56615448 NM_001723 NP_001714 A/G L33S plus 23348827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9043 rs1024196 DST 667 6 56615448 NM_001723 NP_001714 A/G L33S plus 23348827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9044 rs1024196 DST 667 6 56615448 NM_001723 NP_001714 A/G L33S plus 23348827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9045 rs1024196 DST 667 6 56615448 NM_015548 NP_056363 A/G L33S plus 1488895 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9046 rs1024196 DST 667 6 56615448 NM_015548 NP_056363 A/G L33S plus 23348827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9047 rs1024196 DST 667 6 56615448 NM_015548 NP_056363 A/G L33S plus 23348827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9048 rs1024196 DST 667 6 56615448 NM_015548 NP_056363 A/G L33S plus 23348827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9049 rs1024196 DST 667 6 56615448 NM_020388 NP_065121 A/G L33S plus 1488895 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9050 rs1024196 DST 667 6 56615448 NM_020388 NP_065121 A/G L33S plus 23348827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9051 rs1024196 DST 667 6 56615448 NM_020388 NP_065121 A/G L33S plus 23348827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9052 rs1024196 DST 667 6 56615448 NM_020388 NP_065121 A/G L33S plus 23348827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 9053 rs1024323 GRK4 2868 4 3043048 NM_005307 NP_005298 A/G A110V minus 1489036 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 9054 rs1024323 GRK4 2868 4 3043048 NM_005307 NP_005298 A/G A110V minus 1489036 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "HapMap,doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 9055 rs1024323 GRK4 2868 4 3043048 NM_182982 NP_892027 A/G A142V minus 1489036 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 9056 rs1024323 GRK4 2868 4 3043048 NM_182982 NP_892027 A/G A142V minus 1489036 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "HapMap,doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 9057 rs1026128 COG1 9382 17 68708404 NM_018714 NP_061184 A/G N392S plus 3216158 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.37 123 "by doubleHit,submitter,freq,cluster" 17q25.1 component of oligomeric golgi complex 1 9058 rs1026128 COG1 9382 17 68708404 NM_018714 NP_061184 A/G N392S plus 24706885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 17q25.1 component of oligomeric golgi complex 1 9059 rs1026128 COG1 9382 17 68708404 NM_018714 NP_061184 A/G N392S plus 24706885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 17q25.1 component of oligomeric golgi complex 1 9060 rs1026128 COG1 9382 17 68708404 NM_018714 NP_061184 A/G N392S plus 24706885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 17q25.1 component of oligomeric golgi complex 1 9061 rs1027335 MICAL2 9645 11 12238003 NM_014632 NP_055447 C/T L1106P plus 1492358 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq" 11p15.3 flavoprotein oxidoreductase MICAL2 9062 rs1027335 MICAL2 9645 11 12238003 NM_014632 NP_055447 C/T L1106P plus 23579205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq" 11p15.3 flavoprotein oxidoreductase MICAL2 9063 rs1027335 MICAL2 9645 11 12238003 NM_014632 NP_055447 C/T L1106P plus 23579205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq" 11p15.3 flavoprotein oxidoreductase MICAL2 9064 rs1027335 MICAL2 9645 11 12238003 NM_014632 NP_055447 C/T L1106P plus 23579205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 11p15.3 flavoprotein oxidoreductase MICAL2 9065 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 1492423 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9066 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 1492423 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9067 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 1492423 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9068 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 1492423 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9069 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 1492423 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9070 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 24719701 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9071 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 24719701 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9072 rs1027392 USP29 57663 19 62332958 NM_020903 NP_065954 A/G N368S plus 24719701 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.43 ubiquitin specific protease 29 9073 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 1495161 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.45 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9074 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 1495161 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.13 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9075 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 1495161 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.1 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9076 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 1495161 885 TSC-CSHL HapMap-CEPH-30-trios 102 0.3 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9077 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 3177674 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.16 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9078 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 24349523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9079 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 24349523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9080 rs1029871 NEK4 6787 3 52772674 NM_003157 NP_003148 C/G P225A minus 24349523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq" 3p21.1 NIMA (never in mitosis gene a)-related kinase 4 9081 rs1030726 OR51F1 256892 11 4746844 XM_171424 XP_171424 G/T D294Y minus 23547239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 9082 rs1030726 OR51F1 256892 11 4746844 XM_171424 XP_171424 G/T D294Y minus 23547239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 9083 rs1030726 OR51F1 256892 11 4746844 XM_171424 XP_171424 G/T D294Y minus 23547239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 9084 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 1496402 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9085 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 1496402 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9086 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 1496402 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.1 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9087 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 1496402 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9088 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 23980108 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9089 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 23980108 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9090 rs1030986 KLPH 197021 15 64637416 NM_207338 NP_997221 C/T A240T plus 23980108 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 15q22.2 likely ortholog of mouse klotho lactase-phlorizin hydrolase related protein 9091 rs1031639 THAP9 79725 4 84195396 NM_024672 NP_078948 C/T M284I minus 1497110 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,cluster" 4q21.3 THAP domain containing 9 9092 rs1031844 DCNP1 140947 5 134810475 NM_130848 NP_570900 G/T T75P plus 24388197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 9093 rs1031844 DCNP1 140947 5 134810475 NM_130848 NP_570900 G/T T75P plus 24388197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 9094 rs1031844 DCNP1 140947 5 134810475 NM_130848 NP_570900 G/T T75P plus 24388197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 9095 rs1031904 ARAP3 64411 5 141039342 NM_022481 NP_071926 C/G D218H plus 1497414 1303 SEQUENOM CEPH CEPH (92) 92 0.18 86 by freq 5q31.3 "ARF-GAP, RHO-GAP, ankyrin repeat and plekstrin homology domains-containing protein 3" 9096 rs1034268 ZMYND12 84217 1 42567936 NM_032257 NP_115633 A/G F316L plus 1500048 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,submitter,freq,cluster" 1p34.1 "zinc finger, MYND domain containing 12" 9097 rs1034268 ZMYND12 84217 1 42567936 NM_032257 NP_115633 A/G F316L plus 4934867 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.48 123 "by doubleHit,submitter,freq,cluster" 1p34.1 "zinc finger, MYND domain containing 12" 9098 rs1034489 EPB41L5 57669 2 120601540 NM_020909 NP_065960 C/T A462T minus 1500305 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 2q14.2 erythrocyte membrane protein band 4.1 like 5 9099 rs1034489 EPB41L5 57669 2 120601540 NM_020909 NP_065960 C/T A462T minus 23266033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 2q14.2 erythrocyte membrane protein band 4.1 like 5 9100 rs1034489 EPB41L5 57669 2 120601540 NM_020909 NP_065960 C/T A462T minus 23266033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 2q14.2 erythrocyte membrane protein band 4.1 like 5 9101 rs1034489 EPB41L5 57669 2 120601540 NM_020909 NP_065960 C/T A462T minus 23266033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 2q14.2 erythrocyte membrane protein band 4.1 like 5 9102 rs1035539 BCAR1 9564 16 73834276 NM_014567 NP_055382 A/G P76S plus 1501489 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "by doubleHit,freq,cluster" 16q22-q23 breast cancer anti-estrogen resistance 1 9103 rs1035539 BCAR1 9564 16 73834276 NM_014567 NP_055382 A/G P76S plus 3197351 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.38 121 "by doubleHit,freq,cluster" 16q22-q23 breast cancer anti-estrogen resistance 1 9104 rs1035834 FBXO36 130888 2 230687024 NM_174899 NP_777559 G/T L86F plus 1501823 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 86 "HapMap,freq" 2q37.1 F-box protein 36 9105 rs1036199 HAVCR2 84868 5 156464314 NM_032782 NP_116171 A/C R140L plus 3250845 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 123 "by cluster,freq" 5q33.3 hepatitis A virus cellular receptor 2 9106 rs1036199 HAVCR2 84868 5 156464314 NM_032782 NP_116171 A/C R140L plus 23304691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by cluster,freq" 5q33.3 hepatitis A virus cellular receptor 2 9107 rs1036199 HAVCR2 84868 5 156464314 NM_032782 NP_116171 A/C R140L plus 23304691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 5q33.3 hepatitis A virus cellular receptor 2 9108 rs1036199 HAVCR2 84868 5 156464314 NM_032782 NP_116171 A/C R140L plus 23304691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q33.3 hepatitis A virus cellular receptor 2 9109 rs1036533 SGOL2 151246 2 201223230 NM_152524 NP_689737 C/T G9D minus 1502599 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq" 2q33.2 shugoshin-like 2 (S. pombe) 9110 rs1036533 SGOL2 151246 2 201223230 NM_152524 NP_689737 C/T G9D minus 24172163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq" 2q33.2 shugoshin-like 2 (S. pombe) 9111 rs1036533 SGOL2 151246 2 201223230 NM_152524 NP_689737 C/T G9D minus 24172163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq" 2q33.2 shugoshin-like 2 (S. pombe) 9112 rs1036533 SGOL2 151246 2 201223230 NM_152524 NP_689737 C/T G9D minus 24172163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq" 2q33.2 shugoshin-like 2 (S. pombe) 9113 rs1036938 CTSH 1512 15 77024302 NM_004390 NP_004381 C/G C26S plus 1503042 1303 SEQUENOM CEPH CEPH (92) 92 0.3 111 "by doubleHit,freq,cluster" 15q24-q25 cathepsin H 9114 rs1036938 CTSH 1512 15 77024302 NM_004390 NP_004381 C/G C26S plus 3231292 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.1 111 "by doubleHit,freq,cluster" 15q24-q25 cathepsin H 9115 rs1036938 CTSH 1512 15 77024302 NM_148979 NP_683880 C/G C14S plus 1503042 1303 SEQUENOM CEPH CEPH (92) 92 0.3 111 "by doubleHit,freq,cluster" 15q24-q25 cathepsin H 9116 rs1036938 CTSH 1512 15 77024302 NM_148979 NP_683880 C/G C14S plus 3231292 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.1 111 "by doubleHit,freq,cluster" 15q24-q25 cathepsin H 9117 rs1037921 ARNTL2 56938 12 27444833 NM_020183 NP_064568 C/T N340S minus 1504123 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 9118 rs1037921 ARNTL2 56938 12 27444833 NM_020183 NP_064568 C/T N340S minus 1504123 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 9119 rs1037921 ARNTL2 56938 12 27444833 NM_020183 NP_064568 C/T N340S minus 24451963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 9120 rs1037921 ARNTL2 56938 12 27444833 NM_020183 NP_064568 C/T N340S minus 24451963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 9121 rs1037921 ARNTL2 56938 12 27444833 NM_020183 NP_064568 C/T N340S minus 24451963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p12.2-p11.2 aryl hydrocarbon receptor nuclear translocator-like 2 9122 rs1039084 STXBP5 134957 6 147677106 NM_139244 NP_640337 A/G N436S plus 24416541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 6q24.3 syntaxin binding protein 5 (tomosyn) 9123 rs1039084 STXBP5 134957 6 147677106 NM_139244 NP_640337 A/G N436S plus 24416541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 6q24.3 syntaxin binding protein 5 (tomosyn) 9124 rs1039084 STXBP5 134957 6 147677106 NM_139244 NP_640337 A/G N436S plus 24416541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 6q24.3 syntaxin binding protein 5 (tomosyn) 9125 rs1040461 RAB23 51715 6 57163313 NM_016277 NP_057361 C/T G207S plus 1506965 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9126 rs1040461 RAB23 51715 6 57163313 NM_016277 NP_057361 C/T G207S plus 23349465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9127 rs1040461 RAB23 51715 6 57163313 NM_016277 NP_057361 C/T G207S plus 23349465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9128 rs1040461 RAB23 51715 6 57163313 NM_016277 NP_057361 C/T G207S plus 23349465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9129 rs1040461 RAB23 51715 6 57163313 NM_183227 NP_899050 C/T G207S plus 1506965 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9130 rs1040461 RAB23 51715 6 57163313 NM_183227 NP_899050 C/T G207S plus 23349465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9131 rs1040461 RAB23 51715 6 57163313 NM_183227 NP_899050 C/T G207S plus 23349465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9132 rs1040461 RAB23 51715 6 57163313 NM_183227 NP_899050 C/T G207S plus 23349465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6p11 "RAB23, member RAS oncogene family" 9133 rs1040835 GOLGA5 9950 14 92346407 NM_005113 NP_005104 A/G F350L minus 1507380 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 9134 rs1040835 GOLGA5 9950 14 92346407 NM_005113 NP_005104 A/G F350L minus 1507380 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 9135 rs1040835 GOLGA5 9950 14 92346407 NM_005113 NP_005104 A/G F350L minus 24600610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 9136 rs1040835 GOLGA5 9950 14 92346407 NM_005113 NP_005104 A/G F350L minus 24600610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 9137 rs1040835 GOLGA5 9950 14 92346407 NM_005113 NP_005104 A/G F350L minus 24600610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 9138 rs1041073 B3GTL 145173 13 30789746 NM_194318 NP_919299 C/T E370K minus 1507640 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 13q12.3 beta 3-glycosyltransferase-like 9139 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 1507713 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9140 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 12676055 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9141 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 16361875 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9142 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 24074448 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9143 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 24074448 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9144 rs1041135 ITGA8 8516 10 15613056 XM_167711 XP_167711 C/T V1124A minus 24074448 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 10p13 "integrin, alpha 8" 9145 rs1041935 LGALS8 3964 1 233026898 NM_006499 NP_006490 C/T R36C plus 4040243 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9146 rs1041935 LGALS8 3964 1 233026898 NM_006499 NP_006490 C/T R36C plus 23227314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9147 rs1041935 LGALS8 3964 1 233026898 NM_006499 NP_006490 C/T R36C plus 23227314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9148 rs1041935 LGALS8 3964 1 233026898 NM_006499 NP_006490 C/T R36C plus 23227314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9149 rs1041935 LGALS8 3964 1 233026898 NM_201543 NP_963837 C/T R36C plus 4040243 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9150 rs1041935 LGALS8 3964 1 233026898 NM_201543 NP_963837 C/T R36C plus 23227314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9151 rs1041935 LGALS8 3964 1 233026898 NM_201543 NP_963837 C/T R36C plus 23227314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9152 rs1041935 LGALS8 3964 1 233026898 NM_201543 NP_963837 C/T R36C plus 23227314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9153 rs1041935 LGALS8 3964 1 233026898 NM_201544 NP_963838 C/T R36C plus 4040243 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9154 rs1041935 LGALS8 3964 1 233026898 NM_201544 NP_963838 C/T R36C plus 23227314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9155 rs1041935 LGALS8 3964 1 233026898 NM_201544 NP_963838 C/T R36C plus 23227314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9156 rs1041935 LGALS8 3964 1 233026898 NM_201544 NP_963838 C/T R36C plus 23227314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9157 rs1041935 LGALS8 3964 1 233026898 NM_201545 NP_963839 C/T R36C plus 4040243 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9158 rs1041935 LGALS8 3964 1 233026898 NM_201545 NP_963839 C/T R36C plus 23227314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9159 rs1041935 LGALS8 3964 1 233026898 NM_201545 NP_963839 C/T R36C plus 23227314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9160 rs1041935 LGALS8 3964 1 233026898 NM_201545 NP_963839 C/T R36C plus 23227314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9161 rs1041937 LGALS8 3964 1 233028251 NM_006499 NP_006490 A/G M56V plus 20447571 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9162 rs1041937 LGALS8 3964 1 233028251 NM_201543 NP_963837 A/G M56V plus 20447571 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9163 rs1041937 LGALS8 3964 1 233028251 NM_201544 NP_963838 A/G M56V plus 20447571 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9164 rs1041937 LGALS8 3964 1 233028251 NM_201545 NP_963839 A/G M56V plus 20447571 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 9165 rs1041951 FECH 2235 18 53391503 NM_000140 NP_000131 C/T R96Q plus 2653239 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,freq" 18q21.3 ferrochelatase (protoporphyria) 9166 rs1041951 FECH 2235 18 53391503 NM_000140 NP_000131 C/T R96Q plus 2653239 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,freq" 18q21.3 ferrochelatase (protoporphyria) 9167 rs1041951 FECH 2235 18 53391503 NM_000140 NP_000131 C/T R96Q plus 3176108 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.08 121 "HapMap,freq" 18q21.3 ferrochelatase (protoporphyria) 9168 rs1041970 CDH2 1000 18 23843794 NM_001792 NP_001783 C/G S196T minus 1508821 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 18q11.2 "cadherin 2, type 1, N-cadherin (neuronal)" 9169 rs1041972 CDH2 1000 18 23843747 NM_001792 NP_001783 A/C I212L minus 1508825 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 HapMap 18q11.2 "cadherin 2, type 1, N-cadherin (neuronal)" 9170 rs1041972 CDH2 1000 18 23843747 NM_001792 NP_001783 A/C I212L minus 1508825 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 18q11.2 "cadherin 2, type 1, N-cadherin (neuronal)" 9171 rs1041973 IL1RL1 9173 2 102413986 NM_003856 NP_003847 A/C A78E plus 3248932 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9172 rs1041973 IL1RL1 9173 2 102413986 NM_003856 NP_003847 A/C A78E plus 14469027 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9173 rs1041973 IL1RL1 9173 2 102413986 NM_003856 NP_003847 A/C A78E plus 23213566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9174 rs1041973 IL1RL1 9173 2 102413986 NM_003856 NP_003847 A/C A78E plus 23213566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9175 rs1041973 IL1RL1 9173 2 102413986 NM_003856 NP_003847 A/C A78E plus 23213566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9176 rs1041973 IL1RL1 9173 2 102413986 NM_016232 NP_057316 A/C A78E plus 3248932 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9177 rs1041973 IL1RL1 9173 2 102413986 NM_016232 NP_057316 A/C A78E plus 14469027 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9178 rs1041973 IL1RL1 9173 2 102413986 NM_016232 NP_057316 A/C A78E plus 23213566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9179 rs1041973 IL1RL1 9173 2 102413986 NM_016232 NP_057316 A/C A78E plus 23213566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9180 rs1041973 IL1RL1 9173 2 102413986 NM_016232 NP_057316 A/C A78E plus 23213566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9181 rs1041973 IL1RL1 9173 2 102413986 NM_173459 NP_775661 A/C A78E plus 3248932 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.2 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9182 rs1041973 IL1RL1 9173 2 102413986 NM_173459 NP_775661 A/C A78E plus 14469027 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9183 rs1041973 IL1RL1 9173 2 102413986 NM_173459 NP_775661 A/C A78E plus 23213566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9184 rs1041973 IL1RL1 9173 2 102413986 NM_173459 NP_775661 A/C A78E plus 23213566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9185 rs1041973 IL1RL1 9173 2 102413986 NM_173459 NP_775661 A/C A78E plus 23213566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 1 9186 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 2984238 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.36 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9187 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 4328795 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.48 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9188 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 4328795 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.36 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9189 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 6312883 693 EGP_SNPS PDR90 NIHPDR 172 0.38 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9190 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 16360682 649 FHCRC POPU1 USA (20) 40 0.38 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9191 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 16360732 649 FHCRC POPU1 USA (20) 40 0.38 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9192 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 23323156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9193 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 23323156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9194 rs1041981 LTA 4049 6 31648763 NM_000595 NP_000586 A/C T60N plus 23323156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 9195 rs1042007 DNM1 1759 9 128092101 NM_004408 NP_004399 A/G D744N plus 1508887 1303 SEQUENOM CEPH CEPH (92) 92 0.47 106 by freq 9q34 dynamin 1 9196 rs1042017 SREBF1 6720 17 17657712 NM_004176 NP_004167 A/G T1000A minus 1508900 1303 SEQUENOM CEPH CEPH (92) 92 0.45 86 by freq 17p11.2 sterol regulatory element binding transcription factor 1 9197 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 6312533 583 KIDDLAB PO000020C 180 0.16 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9198 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 6312533 827 KIDDLAB PO000008I 240 0.35 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9199 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 6312533 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9200 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 6312533 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9201 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 20419019 889 PHARMGKB_PARC PA128275074 94 0.18 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9202 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 24242162 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9203 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 24242162 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9204 rs1042031 APOB 338 2 21137405 NM_000384 NP_000375 A/G E4181K minus 24242162 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9205 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 3290027 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9206 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 8819680 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.31 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9207 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 8819680 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.19 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9208 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 8819680 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9209 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 8819680 777 SNP500CANCER HISP1 Hispanic (23) 44 0.34 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9210 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 8819680 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.35 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9211 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 20419026 889 PHARMGKB_PARC PA128275074 94 0.18 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9212 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 23841045 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9213 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 23841045 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9214 rs1042034 APOB 338 2 21136933 NM_000384 NP_000375 A/G S4338N minus 23841045 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 9215 rs1042038 PSCDBP 9595 2 158125932 NM_004288 NP_004279 A/G D37N minus 1508934 1303 SEQUENOM CEPH CEPH (92) 92 0.2 86 by freq 2q11.2 "pleckstrin homology, Sec7 and coiled-coil domains, binding protein" 9216 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 12587300 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.44 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9217 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 14323098 693 EGP_SNPS PDR90 NIHPDR 142 0.41 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9218 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 14323098 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9219 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 23426761 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9220 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 23426761 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9221 rs1042044 GLP1R 2740 6 39149480 NM_002062 NP_002053 A/C L260F plus 23426761 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 9222 rs1042057 TYRO3 7301 15 39657537 NM_006293 NP_006284 C/T A815V plus 1508967 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 15q15.1-q21.1 TYRO3 protein tyrosine kinase 9223 rs1042114 OPRD1 4985 1 28959591 NM_000911 NP_000902 G/T C27F plus 9859901 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 "by cluster,freq" 1p36.1-p34.3 "opioid receptor, delta 1" 9224 rs1042117 HLA-DPB1 3115 6 33156517 NM_002121 NP_002112 A/T F64Y plus 24818414 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9225 rs1042121 HLA-DPB1 3115 6 33156520 NM_002121 NP_002112 C/T A65V plus 20422248 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9226 rs1042121 HLA-DPB1 3115 6 33156520 NM_002121 NP_002112 C/T A65V plus 24796300 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9227 rs1042131 HLA-DPB1 3115 6 33156580 NM_002121 NP_002112 A/C A85E plus 20422253 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9228 rs1042133 HLA-DPB1 3115 6 33156584 NM_002121 NP_002112 C/G E86D plus 24796301 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9229 rs1042140 HLA-DPB1 3115 6 33156618 NM_002121 NP_002112 A/G K98E plus 20422260 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 9230 rs1042164 IER2 9592 19 13125398 NM_004907 NP_004898 C/T A133V plus 1509132 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 by freq 19p13.13 immediate early response 2 9231 rs1042178 HLA-DPA1 3113 6 33145500 NM_033554 NP_291032 A/G Q81R minus 23718763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9232 rs1042178 HLA-DPA1 3113 6 33145500 NM_033554 NP_291032 A/G Q81R minus 23718763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9233 rs1042178 HLA-DPA1 3113 6 33145500 NM_033554 NP_291032 A/G Q81R minus 23718763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9234 rs1042178 HLA-DPA1 3113 6 33145500 NM_033554 NP_291032 A/G Q81R minus 24819982 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9235 rs1042190 HLA-DPA1 3113 6 33144977 NM_033554 NP_291032 A/G K142R minus 24796298 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9236 rs1042190 HLA-DPA1 3113 6 33144977 NM_033554 NP_291032 A/G K142R minus 24820641 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 by freq 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9237 rs1042206 FCGR3A 2214 1 158326014 NM_000569 NP_000560 C/T F239S minus 16417111 1303 SEQUENOM CEPH CEPH (92) 92 0.48 120 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)" 9238 rs1042229 FPR1 2357 19 56941484 NM_002029 NP_002020 G/T N192K minus 2984095 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1456 0.42 119 "by submitter,freq,cluster" 19q13.4 formyl peptide receptor 1 9239 rs1042229 FPR1 2357 19 56941484 NM_002029 NP_002020 G/T N192K minus 14699224 1303 SEQUENOM CEPH CEPH (92) 92 0.48 119 "by submitter,freq,cluster" 19q13.4 formyl peptide receptor 1 9240 rs1042303 GPLD1 2822 6 24545437 NM_001503 NP_001494 C/T M694V plus 2632160 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 9241 rs1042303 GPLD1 2822 6 24545437 NM_001503 NP_001494 C/T M694V plus 3239466 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.24 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 9242 rs1042303 GPLD1 2822 6 24545437 NM_001503 NP_001494 C/T M694V plus 24425828 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 9243 rs1042303 GPLD1 2822 6 24545437 NM_001503 NP_001494 C/T M694V plus 24425828 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 9244 rs1042303 GPLD1 2822 6 24545437 NM_001503 NP_001494 C/T M694V plus 24425828 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 9245 rs1042308 HLA-DPA1 3113 6 33144831 NM_033554 NP_291032 G/T F191V minus 23718761 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9246 rs1042308 HLA-DPA1 3113 6 33144831 NM_033554 NP_291032 G/T F191V minus 23718761 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9247 rs1042308 HLA-DPA1 3113 6 33144831 NM_033554 NP_291032 G/T F191V minus 23718761 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9248 rs1042308 HLA-DPA1 3113 6 33144831 NM_033554 NP_291032 G/T F191V minus 24796297 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9249 rs1042308 HLA-DPA1 3113 6 33144831 NM_033554 NP_291032 G/T F191V minus 24813046 1303 SEQUENOM CEPH CEPH (92) 184 0.2 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DP alpha 1" 9250 rs1042337 HLA-DMB 3109 6 33012959 NM_002118 NP_002109 C/T T197I minus 2985215 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.29 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DM beta" 9251 rs1042337 HLA-DMB 3109 6 33012959 NM_002118 NP_002109 C/T T197I minus 12702360 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DM beta" 9252 rs1042337 HLA-DMB 3109 6 33012959 NM_002118 NP_002109 C/T T197I minus 24652764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DM beta" 9253 rs1042337 HLA-DMB 3109 6 33012959 NM_002118 NP_002109 C/T T197I minus 24652764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DM beta" 9254 rs1042337 HLA-DMB 3109 6 33012959 NM_002118 NP_002109 C/T T197I minus 24652764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DM beta" 9255 rs1042339 GRIN2B 2904 12 13607940 NM_000834 NP_000825 A/G V1167I minus 1509468 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 12p12 "glutamate receptor, ionotropic, N-methyl D-aspartate 2B" 9256 rs1042339 GRIN2B 2904 12 13607940 NM_000834 NP_000825 A/G V1167I minus 1509468 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 12p12 "glutamate receptor, ionotropic, N-methyl D-aspartate 2B" 9257 rs1042339 GRIN2B 2904 12 13607940 NM_000834 NP_000825 A/G V1167I minus 1509468 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 12p12 "glutamate receptor, ionotropic, N-methyl D-aspartate 2B" 9258 rs1042339 GRIN2B 2904 12 13607940 NM_000834 NP_000825 A/G V1167I minus 1509468 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 12p12 "glutamate receptor, ionotropic, N-methyl D-aspartate 2B" 9259 rs1042364 ADH4 127 4 100402752 NM_000670 NP_000661 A/G R388G minus 10157120 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 121 "HapMap,submitter,freq,cluster" 4q22 "alcohol dehydrogenase 4 (class II), pi polypeptide" 9260 rs1042364 ADH4 127 4 100402752 NM_000670 NP_000661 A/G R388G minus 10157120 1303 SEQUENOM CEPH CEPH (92) 92 0.29 121 "HapMap,submitter,freq,cluster" 4q22 "alcohol dehydrogenase 4 (class II), pi polypeptide" 9261 rs1042379 CACNA1S 779 1 197740718 NM_000069 NP_000060 C/G E1840D minus 1509554 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 by freq 1q32 "calcium channel, voltage-dependent, L type, alpha 1S subunit" 9262 rs1042381 SDC2 6383 8 97683837 NM_002998 NP_002989 A/T S71T plus 10436597 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 9263 rs1042381 SDC2 6383 8 97683837 NM_002998 NP_002989 A/T S71T plus 10436597 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 9264 rs1042381 SDC2 6383 8 97683837 NM_002998 NP_002989 A/T S71T plus 23505455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 9265 rs1042381 SDC2 6383 8 97683837 NM_002998 NP_002989 A/T S71T plus 23505455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 9266 rs1042381 SDC2 6383 8 97683837 NM_002998 NP_002989 A/T S71T plus 23505455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 9267 rs1042391 GMPR 2766 6 16398740 NM_006877 NP_006868 A/T F256I plus 10319972 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.37 123 "HapMap,doubleHit,freq,cluster" 6p23 guanosine monophosphate reductase 9268 rs1042391 GMPR 2766 6 16398740 NM_006877 NP_006868 A/T F256I plus 10319972 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,freq,cluster" 6p23 guanosine monophosphate reductase 9269 rs1042391 GMPR 2766 6 16398740 NM_006877 NP_006868 A/T F256I plus 24374803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 6p23 guanosine monophosphate reductase 9270 rs1042391 GMPR 2766 6 16398740 NM_006877 NP_006868 A/T F256I plus 24374803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 6p23 guanosine monophosphate reductase 9271 rs1042391 GMPR 2766 6 16398740 NM_006877 NP_006868 A/T F256I plus 24374803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 6p23 guanosine monophosphate reductase 9272 rs1042393 GAA 2548 17 75694192 NM_000152 NP_000143 A/G H199R plus 3176214 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.35 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 9273 rs1042393 GAA 2548 17 75694192 NM_000152 NP_000143 A/G H199R plus 3251873 738 YUSUKE JBIC-ALLELE Japanese (752) 1230 0.44 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 9274 rs1042393 GAA 2548 17 75694192 NM_000152 NP_000143 A/G H199R plus 24796552 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 9275 rs1042401 GLTSCR2 29997 19 52940676 NM_015710 NP_056525 A/C S16R plus 23622488 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 19q13.3 glioma tumor suppressor candidate region gene 2 9276 rs1042401 GLTSCR2 29997 19 52940676 NM_015710 NP_056525 A/C S16R plus 23622488 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 19q13.3 glioma tumor suppressor candidate region gene 2 9277 rs1042401 GLTSCR2 29997 19 52940676 NM_015710 NP_056525 A/C S16R plus 23622488 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 19q13.3 glioma tumor suppressor candidate region gene 2 9278 rs1042445 HRG 3273 3 187878138 NM_000412 NP_000403 C/T R448C plus 1509688 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,submitter,freq,cluster" 3q27 histidine-rich glycoprotein 9279 rs1042445 HRG 3273 3 187878138 NM_000412 NP_000403 C/T R448C plus 1509688 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,submitter,freq,cluster" 3q27 histidine-rich glycoprotein 9280 rs1042445 HRG 3273 3 187878138 NM_000412 NP_000403 C/T R448C plus 23287771 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "HapMap,submitter,freq,cluster" 3q27 histidine-rich glycoprotein 9281 rs1042445 HRG 3273 3 187878138 NM_000412 NP_000403 C/T R448C plus 23287771 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,submitter,freq,cluster" 3q27 histidine-rich glycoprotein 9282 rs1042445 HRG 3273 3 187878138 NM_000412 NP_000403 C/T R448C plus 23287771 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 3q27 histidine-rich glycoprotein 9283 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 3172905 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.37 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9284 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 901 AFFY AfAm 12 0.42 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9285 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 902 AFFY Caucasian 22 0.41 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9286 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 903 AFFY Asian 12 0.42 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9287 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 904 AFFY CEPH 10 0.2 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9288 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 905 AFFY PDpanel 40 0.3 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9289 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 10078370 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9290 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 24333187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9291 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 24333187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9292 rs1042464 HRG 3273 3 187878274 NM_000412 NP_000403 A/T N493I plus 24333187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 9293 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 2463129 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9294 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 2463129 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9295 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 3176059 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.33 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9296 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 5586947 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.46 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9297 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 5586947 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.27 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9298 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 5586947 776 SNP500CANCER AFR1 African / African-American (24) 48 0.29 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9299 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 5586947 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9300 rs1042522 TP53 7157 17 7520197 NM_000546 NP_000537 C/G P72R minus 5586947 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 121 "HapMap,doubleHit,freq,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 9301 rs1042579 THBD 7056 20 22976724 NM_000361 NP_000352 C/T A473V minus 4388264 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.15 121 "by cluster,freq" 20p12-cen thrombomodulin 9302 rs1042579 THBD 7056 20 22976724 NM_000361 NP_000352 C/T A473V minus 4388264 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.13 121 "by cluster,freq" 20p12-cen thrombomodulin 9303 rs1042579 THBD 7056 20 22976724 NM_000361 NP_000352 C/T A473V minus 4388264 1303 SEQUENOM CEPH CEPH (92) 92 0.38 121 "by cluster,freq" 20p12-cen thrombomodulin 9304 rs1042589 TPO 7173 2 1525334 NM_175720 NP_783651 C/G P918R plus 23877133 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 2p25 thyroid peroxidase 9305 rs1042589 TPO 7173 2 1525334 NM_175720 NP_783651 C/G P918R plus 23877133 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 2p25 thyroid peroxidase 9306 rs1042589 TPO 7173 2 1525334 NM_175720 NP_783651 C/G P918R plus 23877133 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 2p25 thyroid peroxidase 9307 rs1042589 TPO 7173 2 1525334 NM_175720 NP_783651 C/G P918R plus 24815828 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 "by doubleHit,freq,cluster" 2p25 thyroid peroxidase 9308 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 1509962 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9309 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 1509962 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9310 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 700 PSU-ANTH NIGERIA_(BENIN) Nigerian 46 1 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9311 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 701 PSU-ANTH NIGERIA_(IBADAN) Nigerian 46 1 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9312 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 702 PSU-ANTH SIERRA_LEONE_(MENDE) Sierra Leone 183 1 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9313 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 704 PSU-ANTH CENTRAL_AFRICAN_REPUBLIC Central African Republic 52 0.02 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9314 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 705 PSU-ANTH GERMANY German 30 0.41 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9315 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 706 PSU-ANTH SPAIN Spanish 79 0.49 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9316 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 709 PSU-ANTH MAYAN Mexico 96 0.03 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9317 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 4387030 710 PSU-ANTH SOUTH-WESTERN_NATIVE_AMERICANS USA 88 0.09 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9318 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 24427553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9319 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 24427553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9320 rs1042602 TYR 7299 11 88551344 NM_000372 NP_000363 A/C S192Y plus 24427553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 11q14-q21 tyrosinase (oculocutaneous albinism IA) 9321 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 4990984 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.45 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9322 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 5606249 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.17 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9323 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 5606249 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.07 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9324 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 5606249 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9325 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 5606249 777 SNP500CANCER HISP1 Hispanic (23) 46 0.17 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9326 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 5606249 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.42 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9327 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 22030142 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9328 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 23901762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9329 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 23901762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9330 rs1042636 CASR 846 3 123486459 NM_000388 NP_000379 A/G R990G plus 23901762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 9331 rs1042703 MMP14 4323 14 22375888 NM_004995 NP_004986 C/T P8S plus 2414700 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 9332 rs1042703 MMP14 4323 14 22375888 NM_004995 NP_004986 C/T P8S plus 23815139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 9333 rs1042703 MMP14 4323 14 22375888 NM_004995 NP_004986 C/T P8S plus 23815139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 9334 rs1042703 MMP14 4323 14 22375888 NM_004995 NP_004986 C/T P8S plus 23815139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 9335 rs1042704 MMP14 4323 14 22382434 NM_004995 NP_004986 A/G D273N plus 1510165 1303 SEQUENOM CEPH CEPH (92) 92 0.49 106 by freq 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 9336 rs1042708 UGT1A6 54578 2 234383859 NM_001072 NP_001063 A/C S70Y plus 1510170 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9337 rs1042708 UGT1A6 54578 2 234383859 NM_001072 NP_001063 A/C S70Y plus 1510170 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9338 rs1042709 UGT1A1 54658 2 234463134 NM_000463 NP_000454 C/G A511P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A1" 9339 rs1042709 UGT1A1 54658 2 234463134 NM_000463 NP_000454 C/G A511P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A1" 9340 rs1042709 UGT1A6 54578 2 234463134 NM_001072 NP_001063 C/G A510P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9341 rs1042709 UGT1A6 54578 2 234463134 NM_001072 NP_001063 C/G A510P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9342 rs1042709 UGT1A4 54657 2 234463134 NM_007120 NP_009051 C/G A512P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A4" 9343 rs1042709 UGT1A4 54657 2 234463134 NM_007120 NP_009051 C/G A512P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A4" 9344 rs1042709 UGT1A10 54575 2 234463134 NM_019075 NP_061948 C/G A508P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A10" 9345 rs1042709 UGT1A10 54575 2 234463134 NM_019075 NP_061948 C/G A508P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A10" 9346 rs1042709 UGT1A8 54576 2 234463134 NM_019076 NP_061949 C/G A508P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 9347 rs1042709 UGT1A8 54576 2 234463134 NM_019076 NP_061949 C/G A508P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 9348 rs1042709 UGT1A7 54577 2 234463134 NM_019077 NP_061950 C/G A508P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A7" 9349 rs1042709 UGT1A7 54577 2 234463134 NM_019077 NP_061950 C/G A508P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A7" 9350 rs1042709 UGT1A5 54579 2 234463134 NM_019078 NP_061951 C/G A512P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 9351 rs1042709 UGT1A5 54579 2 234463134 NM_019078 NP_061951 C/G A512P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 9352 rs1042709 UGT1A3 54659 2 234463134 NM_019093 NP_061966 C/G A512P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A3" 9353 rs1042709 UGT1A3 54659 2 234463134 NM_019093 NP_061966 C/G A512P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A3" 9354 rs1042709 UGT1A9 54600 2 234463134 NM_021027 NP_066307 C/G A508P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A9" 9355 rs1042709 UGT1A9 54600 2 234463134 NM_021027 NP_066307 C/G A508P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A9" 9356 rs1042709 UGT1A6 54578 2 234463134 NM_205862 NP_995584 C/G A243P plus 1510171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9357 rs1042709 UGT1A6 54578 2 234463134 NM_205862 NP_995584 C/G A243P plus 1510171 1303 SEQUENOM CEPH CEPH (92) 92 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 9358 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 3172964 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.3 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9359 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 12586695 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9360 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 24195702 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9361 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 24195702 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9362 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 24195702 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9363 rs1042713 ADRB2 154 5 148186633 NM_000024 NP_000015 A/G G16R plus 24795951 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9364 rs1042714 ADRB2 154 5 148186666 NM_000024 NP_000015 C/G E27Q plus 12586696 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9365 rs1042714 ADRB2 154 5 148186666 NM_000024 NP_000015 C/G E27Q plus 24683414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9366 rs1042714 ADRB2 154 5 148186666 NM_000024 NP_000015 C/G E27Q plus 24683414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9367 rs1042714 ADRB2 154 5 148186666 NM_000024 NP_000015 C/G E27Q plus 24683414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 5q31-q32 "adrenergic, beta-2-, receptor, surface" 9368 rs1042767 FMO4 2329 1 168035348 NM_002022 NP_002013 C/T V323A plus 3177384 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.13 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 4 9369 rs1042767 FMO4 2329 1 168035348 NM_002022 NP_002013 C/T V323A plus 3177384 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 4 9370 rs1042767 FMO4 2329 1 168035348 NM_002022 NP_002013 C/T V323A plus 23199714 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 4 9371 rs1042767 FMO4 2329 1 168035348 NM_002022 NP_002013 C/T V323A plus 23199714 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 4 9372 rs1042767 FMO4 2329 1 168035348 NM_002022 NP_002013 C/T V323A plus 23199714 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 4 9373 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 3227378 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.48 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9374 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 19520909 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9375 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 19520909 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9376 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 24349623 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9377 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 24349623 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9378 rs1042779 ITIH1 3697 3 52796051 NM_002215 NP_002206 A/G Q595R plus 24349623 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 3p21.2-p21.1 inter-alpha (globulin) inhibitor H1 9379 rs1042780 ME3 10873 11 85839036 NM_006680 NP_006671 C/G K324N minus 1510291 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 120 "HapMap,submitter,freq" 11cen-q22.3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" 9380 rs1042780 ME3 10873 11 85839036 NM_006680 NP_006671 C/G K324N minus 1510291 1303 SEQUENOM CEPH CEPH (92) 92 0.42 120 "HapMap,submitter,freq" 11cen-q22.3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" 9381 rs1042821 MSH6 2956 2 47922139 NM_000179 NP_000170 C/T G39E minus 4384481 693 EGP_SNPS PDR90 NIHPDR 152 0.16 123 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 9382 rs1042838 PGR 5241 11 100438622 NM_000926 NP_000917 G/T V660L minus 16343470 693 EGP_SNPS PDR90 NIHPDR 180 0.1 123 "by submitter,freq,cluster" 11q22-q23 progesterone receptor 9383 rs1042838 PGR 5241 11 100438622 NM_000926 NP_000917 G/T V660L minus 16343470 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 11q22-q23 progesterone receptor 9384 rs1042838 PGR 5241 11 100438622 NM_000926 NP_000917 G/T V660L minus 24586705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by submitter,freq,cluster" 11q22-q23 progesterone receptor 9385 rs1042838 PGR 5241 11 100438622 NM_000926 NP_000917 G/T V660L minus 24586705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 11q22-q23 progesterone receptor 9386 rs1042838 PGR 5241 11 100438622 NM_000926 NP_000917 G/T V660L minus 24586705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 11q22-q23 progesterone receptor 9387 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 4020165 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.29 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9388 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 19494050 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9389 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 24531262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9390 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 24531262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9391 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 24531262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9392 rs1042917 COL6A2 1292 21 46370196 NM_001849 NP_001840 A/G R680H plus 24816818 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9393 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 4020165 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.29 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9394 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 19494050 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9395 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 24531262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9396 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 24531262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9397 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 24531262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9398 rs1042917 COL6A2 1292 21 46370196 NM_058174 NP_478054 A/G R680H plus 24816818 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9399 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 4020165 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.29 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9400 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 19494050 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9401 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 24531262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9402 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 24531262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9403 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 24531262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9404 rs1042917 COL6A2 1292 21 46370196 NM_058175 NP_478055 A/G R680H plus 24816818 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by doubleHit,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 9405 rs1043149 LGICZ 353174 17 71589392 NM_180990 NP_851321 A/G Q280X minus 3232047 738 YUSUKE JBIC-ALLELE Japanese (752) 706 0.28 100 "HapMap,freq,cluster" 17q25.3 ligand-gated ion channel subunit 9406 rs1043149 LGICZ 353174 17 71589392 NM_180990 NP_851321 A/G Q280X minus 3232047 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 100 "HapMap,freq,cluster" 17q25.3 ligand-gated ion channel subunit 9407 rs1043261 IL17RB 55540 3 53874316 NM_018725 NP_061195 C/T Q484X plus 4960686 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.1 123 "HapMap,doubleHit,freq,cluster" 3p21.1 interleukin 17 receptor B 9408 rs1043261 IL17RB 55540 3 53874316 NM_018725 NP_061195 C/T Q484X plus 10050330 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,freq,cluster" 3p21.1 interleukin 17 receptor B 9409 rs1043261 IL17RB 55540 3 53874316 NM_018725 NP_061195 C/T Q484X plus 23945774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 3p21.1 interleukin 17 receptor B 9410 rs1043261 IL17RB 55540 3 53874316 NM_018725 NP_061195 C/T Q484X plus 23945774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 3p21.1 interleukin 17 receptor B 9411 rs1043261 IL17RB 55540 3 53874316 NM_018725 NP_061195 C/T Q484X plus 23945774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 3p21.1 interleukin 17 receptor B 9412 rs1043307 PSMD9 5715 12 120816516 NM_002813 NP_002804 A/G E197G plus 1511360 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 9413 rs1043307 PSMD9 5715 12 120816516 NM_002813 NP_002804 A/G E197G plus 23934828 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 9414 rs1043307 PSMD9 5715 12 120816516 NM_002813 NP_002804 A/G E197G plus 23934828 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 9415 rs1043307 PSMD9 5715 12 120816516 NM_002813 NP_002804 A/G E197G plus 23934828 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 9416 rs1043424 PINK1 65018 1 20722306 NM_032409 NP_115785 A/C N521T plus 1511554 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36 PTEN induced putative kinase 1 9417 rs1043424 PINK1 65018 1 20722306 NM_032409 NP_115785 A/C N521T plus 15414508 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36 PTEN induced putative kinase 1 9418 rs1043424 PINK1 65018 1 20722306 NM_032409 NP_115785 A/C N521T plus 23842660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36 PTEN induced putative kinase 1 9419 rs1043424 PINK1 65018 1 20722306 NM_032409 NP_115785 A/C N521T plus 23842660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36 PTEN induced putative kinase 1 9420 rs1043424 PINK1 65018 1 20722306 NM_032409 NP_115785 A/C N521T plus 23842660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36 PTEN induced putative kinase 1 9421 rs1043673 NALP2 55655 19 60204044 NM_017852 NP_060322 A/C A1052E plus 3252806 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.22 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 9422 rs1043673 NALP2 55655 19 60204044 NM_017852 NP_060322 A/C A1052E plus 3252806 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 9423 rs1043673 NALP2 55655 19 60204044 NM_017852 NP_060322 A/C A1052E plus 24694089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 9424 rs1043673 NALP2 55655 19 60204044 NM_017852 NP_060322 A/C A1052E plus 24694089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 9425 rs1043673 NALP2 55655 19 60204044 NM_017852 NP_060322 A/C A1052E plus 24694089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 9426 rs1043879 NPD014 57035 1 25315387 NM_020317 NP_064713 A/G E239G minus 20516951 1303 SEQUENOM CEPH CEPH (92) 92 0.26 121 "by submitter,freq" 1p36.13-p35.1 NPD014 protein 9427 rs1043942 TU3A 11170 3 58528037 NM_007177 NP_009108 G/T A89S minus 24820814 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 by freq 3p21.1 TU3A protein 9428 rs1043963 USHBP1 83878 19 17222116 NM_031941 NP_114147 C/T A677V minus 1512609 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 by freq 19p13 Usher syndrome 1C binding protein 1 9429 rs1044009 NOTCH3 4854 19 15132771 NM_000435 NP_000426 C/T A2223V minus 2990861 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.4 123 "by cluster,freq" 19p13.2-p13.1 Notch homolog 3 (Drosophila) 9430 rs1044009 NOTCH3 4854 19 15132771 NM_000435 NP_000426 C/T A2223V minus 2990861 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "by cluster,freq" 19p13.2-p13.1 Notch homolog 3 (Drosophila) 9431 rs1044009 NOTCH3 4854 19 15132771 NM_000435 NP_000426 C/T A2223V minus 23538988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 19p13.2-p13.1 Notch homolog 3 (Drosophila) 9432 rs1044009 NOTCH3 4854 19 15132771 NM_000435 NP_000426 C/T A2223V minus 23538988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 19p13.2-p13.1 Notch homolog 3 (Drosophila) 9433 rs1044009 NOTCH3 4854 19 15132771 NM_000435 NP_000426 C/T A2223V minus 23538988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 19p13.2-p13.1 Notch homolog 3 (Drosophila) 9434 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 3231124 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.44 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9435 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 3231124 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9436 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 3231124 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9437 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 24022117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9438 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 24022117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9439 rs1044032 SQRDL 58472 15 43755727 NM_021199 NP_067022 C/T I264T plus 24022117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 15q15 sulfide quinone reductase-like (yeast) 9440 rs1044057 STX7 8417 6 132866329 NM_003569 NP_003560 A/G A12T minus 1512787 1303 SEQUENOM CEPH CEPH (92) 92 0.24 86 by freq 6q23.1 syntaxin 7 9441 rs1044128 STATIP1 55250 18 32008538 NM_018255 NP_060725 A/C H806P plus 1512937 1303 SEQUENOM CEPH CEPH (92) 92 0.02 106 by freq 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 9442 rs1044134 STATIP1 55250 18 32008564 NM_018255 NP_060725 A/C T815P plus 1512947 1303 SEQUENOM CEPH CEPH (92) 92 0.43 106 by freq 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 9443 rs1044141 STK17A 9263 7 43437520 NM_004760 NP_004751 A/G K362E plus 2989595 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.29 123 "by doubleHit,freq,cluster" 7p12-p14 serine/threonine kinase 17a (apoptosis-inducing) 9444 rs1044141 STK17A 9263 7 43437520 NM_004760 NP_004751 A/G K362E plus 10414990 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq,cluster" 7p12-p14 serine/threonine kinase 17a (apoptosis-inducing) 9445 rs1044141 STK17A 9263 7 43437520 NM_004760 NP_004751 A/G K362E plus 23968531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 7p12-p14 serine/threonine kinase 17a (apoptosis-inducing) 9446 rs1044141 STK17A 9263 7 43437520 NM_004760 NP_004751 A/G K362E plus 23968531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7p12-p14 serine/threonine kinase 17a (apoptosis-inducing) 9447 rs1044141 STK17A 9263 7 43437520 NM_004760 NP_004751 A/G K362E plus 23968531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 7p12-p14 serine/threonine kinase 17a (apoptosis-inducing) 9448 rs1044190 VAPA 9218 18 9940468 NM_003574 NP_003565 C/T V203A plus 1513071 1303 SEQUENOM CEPH CEPH (92) 92 0.02 106 by freq 18p11.22 "VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa" 9449 rs1044190 VAPA 9218 18 9940468 NM_194434 NP_919415 C/T V158A plus 1513071 1303 SEQUENOM CEPH CEPH (92) 92 0.02 106 by freq 18p11.22 "VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa" 9450 rs1044240 ALCAM 214 3 106741551 NM_001627 NP_001618 A/G N258S plus 24796196 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 3q13.1 activated leukocyte cell adhesion molecule 9451 rs1044243 ALCAM 214 3 106743210 NM_001627 NP_001618 C/T T301M plus 14169589 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by cluster,freq" 3q13.1 activated leukocyte cell adhesion molecule 9452 rs1044243 ALCAM 214 3 106743210 NM_001627 NP_001618 C/T T301M plus 24308750 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 3q13.1 activated leukocyte cell adhesion molecule 9453 rs1044243 ALCAM 214 3 106743210 NM_001627 NP_001618 C/T T301M plus 24308750 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.08 123 "by cluster,freq" 3q13.1 activated leukocyte cell adhesion molecule 9454 rs1044243 ALCAM 214 3 106743210 NM_001627 NP_001618 C/T T301M plus 24308750 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 3q13.1 activated leukocyte cell adhesion molecule 9455 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 3250358 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.14 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9456 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 3250358 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9457 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 3250358 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9458 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 24535140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9459 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 24535140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9460 rs1044250 ANGPTL4 51129 19 8342164 NM_016109 NP_057193 C/T T266M plus 24535140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9461 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 3250358 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.14 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9462 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 3250358 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9463 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 3250358 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9464 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 24535140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9465 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 24535140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9466 rs1044250 ANGPTL4 51129 19 8342164 NM_139314 NP_647475 C/T T266M plus 24535140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.3 angiopoietin-like 4 9467 rs1044261 IDI2 91734 10 1055710 NM_033261 NP_150286 C/T W144X plus 12109295 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "by cluster,freq" 10p15.3 isopentenyl-diphosphate delta isomerase 2 9468 rs1044261 IDI2 91734 10 1055710 NM_033261 NP_150286 C/T W144X plus 24623784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 10p15.3 isopentenyl-diphosphate delta isomerase 2 9469 rs1044261 IDI2 91734 10 1055710 NM_033261 NP_150286 C/T W144X plus 24623784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 10p15.3 isopentenyl-diphosphate delta isomerase 2 9470 rs1044261 IDI2 91734 10 1055710 NM_033261 NP_150286 C/T W144X plus 24623784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10p15.3 isopentenyl-diphosphate delta isomerase 2 9471 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.21 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9472 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9473 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 901 AFFY AfAm 12 0.33 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9474 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 902 AFFY Caucasian 20 0.15 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9475 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 903 AFFY Asian 10 0.2 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9476 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 904 AFFY CEPH 12 0.17 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9477 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 4935032 905 AFFY PDpanel 42 0.1 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9478 rs1044280 KIDINS220 57498 2 8821940 XM_291015 XP_291015 G/T Q1609H minus 21646842 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "HapMap,freq,cluster" 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 9479 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 901 AFFY AfAm 12 1 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9480 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 902 AFFY Caucasian 22 0.09 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9481 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9482 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 904 AFFY CEPH 12 0.17 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9483 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 905 AFFY PDpanel 46 0.13 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9484 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 10331608 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9485 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 23373832 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9486 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 23373832 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9487 rs1044418 REPS1 85021 6 139271565 NM_031922 NP_114128 A/G V664I minus 23373832 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q23.1-q24.1 RALBP1 associated Eps domain containing 1 9488 rs1044463 SNX2 6643 5 122182555 NM_003100 NP_003091 G/T A384S plus 1513662 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 by freq 5q23 sorting nexin 2 9489 rs1044463 SNX2 6643 5 122182555 NM_003100 NP_003091 G/T A384S plus 24812816 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 5q23 sorting nexin 2 9490 rs1044498 ENPP1 5167 6 132214061 NM_006208 NP_006199 A/C K121Q plus 12587306 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.15 123 "by doubleHit,freq,cluster" 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 9491 rs1044498 ENPP1 5167 6 132214061 NM_006208 NP_006199 A/C K121Q plus 22481659 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 9492 rs1044498 ENPP1 5167 6 132214061 NM_006208 NP_006199 A/C K121Q plus 23404875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 9493 rs1044498 ENPP1 5167 6 132214061 NM_006208 NP_006199 A/C K121Q plus 23404875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 9494 rs1044498 ENPP1 5167 6 132214061 NM_006208 NP_006199 A/C K121Q plus 23404875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 9495 rs1044565 BC-2 27243 19 63757354 NM_014453 NP_055268 A/G E13G minus 1513920 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 19q putative breast adenocarcinoma marker (32kD) 9496 rs1044565 BC-2 27243 19 63757354 NM_198426 NP_940818 A/G E13G minus 1513920 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 19q putative breast adenocarcinoma marker (32kD) 9497 rs1044575 MRPL30 51263 2 99270588 NM_145212 NP_660213 A/G A130T plus 16843524 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,submitter,freq,cluster" 2q11.2 mitochondrial ribosomal protein L30 9498 rs1044575 MRPL30 51263 2 99270588 NM_145213 NP_660214 A/G A130T plus 16843524 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,submitter,freq,cluster" 2q11.2 mitochondrial ribosomal protein L30 9499 rs1044808 CGI-143 51027 1 146684978 NM_016074 NP_057158 C/G G98A plus 1514415 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 1p36.13-q31.3 CGI-143 protein 9500 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 4928574 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9501 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 4928574 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9502 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 16656589 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9503 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 24588894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9504 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 24588894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9505 rs1045002 FBXO34 55030 14 54888270 NM_017943 NP_060413 A/T I470N plus 24588894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 14q22.2 F-box protein 34 9506 rs1045012 ARPC1B 10095 7 98629005 NM_005720 NP_005711 C/G K37N minus 14546249 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 7q22.1 "actin related protein 2/3 complex, subunit 1B, 41kDa" 9507 rs1045012 ARPC1B 10095 7 98629005 NM_005720 NP_005711 C/G K37N minus 23476794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 7q22.1 "actin related protein 2/3 complex, subunit 1B, 41kDa" 9508 rs1045012 ARPC1B 10095 7 98629005 NM_005720 NP_005711 C/G K37N minus 23476794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 7q22.1 "actin related protein 2/3 complex, subunit 1B, 41kDa" 9509 rs1045012 ARPC1B 10095 7 98629005 NM_005720 NP_005711 C/G K37N minus 23476794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 7q22.1 "actin related protein 2/3 complex, subunit 1B, 41kDa" 9510 rs1045102 CNKSR1 10256 1 26199991 NM_006314 NP_006305 A/T K651M plus 1514971 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.06 86 by freq 1p35.3 connector enhancer of kinase suppressor of Ras 1 9511 rs1045102 CNKSR1 10256 1 26199991 NM_006314 NP_006305 A/T K651M plus 1514971 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.06 86 by freq 1p35.3 connector enhancer of kinase suppressor of Ras 1 9512 rs1045102 CNKSR1 10256 1 26199991 NM_006314 NP_006305 A/T K651M plus 1514971 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 1p35.3 connector enhancer of kinase suppressor of Ras 1 9513 rs1045102 CNKSR1 10256 1 26199991 NM_006314 NP_006305 A/T K651M plus 1514971 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 1p35.3 connector enhancer of kinase suppressor of Ras 1 9514 rs1045105 CNKSR1 10256 1 26200098 NM_006314 NP_006305 A/C H687N plus 1514976 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.25 106 "HapMap,submitter,freq" 1p35.3 connector enhancer of kinase suppressor of Ras 1 9515 rs1045105 CNKSR1 10256 1 26200098 NM_006314 NP_006305 A/C H687N plus 1514976 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.18 106 "HapMap,submitter,freq" 1p35.3 connector enhancer of kinase suppressor of Ras 1 9516 rs1045105 CNKSR1 10256 1 26200098 NM_006314 NP_006305 A/C H687N plus 1514976 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.31 106 "HapMap,submitter,freq" 1p35.3 connector enhancer of kinase suppressor of Ras 1 9517 rs1045105 CNKSR1 10256 1 26200098 NM_006314 NP_006305 A/C H687N plus 1514976 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 106 "HapMap,submitter,freq" 1p35.3 connector enhancer of kinase suppressor of Ras 1 9518 rs1045105 CNKSR1 10256 1 26200098 NM_006314 NP_006305 A/C H687N plus 1514976 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 "HapMap,submitter,freq" 1p35.3 connector enhancer of kinase suppressor of Ras 1 9519 rs1045142 ROCK1 6093 18 16788810 NM_005406 NP_005397 A/G R1262Q minus 3757429 1303 SEQUENOM CEPH CEPH (92) 92 0.02 106 by freq 18q11.2 "Rho-associated, coiled-coil containing protein kinase 1" 9520 rs1045216 PLEKHA1 59338 10 124179187 NM_021622 NP_067635 A/G T320A plus 10582713 1303 SEQUENOM CEPH CEPH (92) 46 0.5 121 "by cluster,freq" 10q26.13 "pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1" 9521 rs1045288 PSMD13 5719 11 227087 NM_002817 NP_002808 A/G N13S plus 3207719 738 YUSUKE JBIC-ALLELE Japanese (752) 718 0.16 121 "by doubleHit,freq,cluster" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 9522 rs1045288 PSMD13 5719 11 227087 NM_002817 NP_002808 A/G N13S plus 15814939 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 9523 rs1045332 CGI-105 51011 2 95498556 NM_016044 NP_057128 C/T M198T plus 3270027 1303 SEQUENOM CEPH CEPH (92) 92 0.21 100 by freq 2p24.3-p11.2 CGI-105 protein 9524 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.12 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9525 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9526 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 776 SNP500CANCER AFR1 African / African-American (24) 48 0.21 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9527 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9528 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9529 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9530 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 5586324 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9531 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 24275316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.28 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9532 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 24275316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.03 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9533 rs1045485 CASP8 841 2 201975095 NM_001228 NP_001219 C/G D302H plus 24275316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9534 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.12 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9535 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9536 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 776 SNP500CANCER AFR1 African / African-American (24) 48 0.21 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9537 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9538 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9539 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9540 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 5586324 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9541 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 24275316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.28 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9542 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 24275316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.03 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9543 rs1045485 CASP8 841 2 201975095 NM_033355 NP_203519 C/G D285H plus 24275316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9544 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.12 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9545 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9546 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 776 SNP500CANCER AFR1 African / African-American (24) 48 0.21 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9547 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9548 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9549 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9550 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 5586324 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9551 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 24275316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.28 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9552 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 24275316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.03 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9553 rs1045485 CASP8 841 2 201975095 NM_033356 NP_203520 C/G D270H plus 24275316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2q33-q34 "caspase 8, apoptosis-related cysteine protease" 9554 rs1045546 TAPBPL 55080 12 6438168 NM_018009 NP_060479 A/G T334M minus 1515844 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 by freq 12p13.31 TAP binding protein-like 9555 rs1045546 TAPBPL 55080 12 6438168 NM_018009 NP_060479 A/G T334M minus 24697367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 12p13.31 TAP binding protein-like 9556 rs1045546 TAPBPL 55080 12 6438168 NM_018009 NP_060479 A/G T334M minus 24697367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12p13.31 TAP binding protein-like 9557 rs1045546 TAPBPL 55080 12 6438168 NM_018009 NP_060479 A/G T334M minus 24697367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12p13.31 TAP binding protein-like 9558 rs1045644 COCH 1690 14 30424847 NM_004086 NP_004077 C/G T352S plus 19991809 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by cluster,freq" 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 9559 rs1045644 COCH 1690 14 30424847 NM_004086 NP_004077 C/G T352S plus 24543831 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 9560 rs1045644 COCH 1690 14 30424847 NM_004086 NP_004077 C/G T352S plus 24543831 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 9561 rs1045644 COCH 1690 14 30424847 NM_004086 NP_004077 C/G T352S plus 24543831 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 9562 rs1045706 PJA2 9867 5 108742197 NM_014819 NP_055634 A/G Q297R minus 19608392 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 9563 rs1045706 PJA2 9867 5 108742197 NM_014819 NP_055634 A/G Q297R minus 24349022 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 9564 rs1045706 PJA2 9867 5 108742197 NM_014819 NP_055634 A/G Q297R minus 24349022 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 9565 rs1045706 PJA2 9867 5 108742197 NM_014819 NP_055634 A/G Q297R minus 24349022 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,submitter,freq,cluster" 5q22.1 "praja 2, RING-H2 motif containing" 9566 rs1045861 CHORDC1 26973 11 89575234 NM_012124 NP_036256 A/C A329D minus 12132352 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 11q14.3 "cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1" 9567 rs1045861 CHORDC1 26973 11 89575234 NM_012124 NP_036256 A/C A329D minus 23393424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 11q14.3 "cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1" 9568 rs1045861 CHORDC1 26973 11 89575234 NM_012124 NP_036256 A/C A329D minus 23393424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 11q14.3 "cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1" 9569 rs1045861 CHORDC1 26973 11 89575234 NM_012124 NP_036256 A/C A329D minus 23393424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.33 123 "by doubleHit,freq,cluster" 11q14.3 "cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1" 9570 rs1045922 RNASE6 6039 14 20319964 NM_005615 NP_005606 A/G R89Q plus 1516639 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 by freq 14q11.2 "ribonuclease, RNase A family, k6" 9571 rs1046080 BAT2 7916 6 31703861 NM_004638 NP_004629 A/C T532K plus 23370040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9572 rs1046080 BAT2 7916 6 31703861 NM_004638 NP_004629 A/C T532K plus 23370040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9573 rs1046080 BAT2 7916 6 31703861 NM_004638 NP_004629 A/C T532K plus 23370040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9574 rs1046080 BAT2 7916 6 31703861 NM_004638 NP_004629 A/C T532K plus 24815449 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9575 rs1046080 BAT2 7916 6 31703861 NM_080686 NP_542417 A/C T544K plus 23370040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9576 rs1046080 BAT2 7916 6 31703861 NM_080686 NP_542417 A/C T544K plus 23370040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9577 rs1046080 BAT2 7916 6 31703861 NM_080686 NP_542417 A/C T544K plus 23370040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9578 rs1046080 BAT2 7916 6 31703861 NM_080686 NP_542417 A/C T544K plus 24815449 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9579 rs1046088 EP300 2033 22 39898883 NM_001429 NP_001420 A/C Q2223P plus 13361762 1303 SEQUENOM CEPH CEPH (92) 92 0.2 119 by freq 22q13.2 E1A binding protein p300 9580 rs1046089 BAT2 7916 6 31710946 NM_004638 NP_004629 A/G R1728H plus 3219075 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.33 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9581 rs1046089 BAT2 7916 6 31710946 NM_004638 NP_004629 A/G R1728H plus 23370207 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9582 rs1046089 BAT2 7916 6 31710946 NM_004638 NP_004629 A/G R1728H plus 23370207 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9583 rs1046089 BAT2 7916 6 31710946 NM_004638 NP_004629 A/G R1728H plus 23370207 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9584 rs1046089 BAT2 7916 6 31710946 NM_004638 NP_004629 A/G R1728H plus 24796276 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9585 rs1046089 BAT2 7916 6 31710946 NM_080686 NP_542417 A/G R1740H plus 3219075 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.33 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9586 rs1046089 BAT2 7916 6 31710946 NM_080686 NP_542417 A/G R1740H plus 23370207 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9587 rs1046089 BAT2 7916 6 31710946 NM_080686 NP_542417 A/G R1740H plus 23370207 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9588 rs1046089 BAT2 7916 6 31710946 NM_080686 NP_542417 A/G R1740H plus 23370207 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9589 rs1046089 BAT2 7916 6 31710946 NM_080686 NP_542417 A/G R1740H plus 24796276 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 9590 rs1046097 TUBG2 27175 17 38072225 NM_016437 NP_057521 A/G M413V plus 3235547 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.47 121 "by doubleHit,freq,cluster" 17q21 "tubulin, gamma 2" 9591 rs1046097 TUBG2 27175 17 38072225 NM_016437 NP_057521 A/G M413V plus 10856512 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 17q21 "tubulin, gamma 2" 9592 rs1046116 PKP2 5318 12 32913201 NM_004572 NP_004563 C/T L366P minus 12223634 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,submitter,freq,cluster" 12p11 plakophilin 2 9593 rs1046116 PKP2 5318 12 32913201 NM_004572 NP_004563 C/T L366P minus 12223634 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "HapMap,doubleHit,submitter,freq,cluster" 12p11 plakophilin 2 9594 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 1517248 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9595 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 2981655 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9596 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 2981655 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.17 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9597 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 24607243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9598 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 24607243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9599 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 24607243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9600 rs1046248 BDKRB2 624 14 95773237 NM_000623 NP_000614 C/T R14C plus 24795976 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 by freq 14q32.1-q32.2 bradykinin receptor B2 9601 rs1046268 TJP3 27134 19 3701615 NM_014428 NP_055243 C/T M931T plus 12469289 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by doubleHit,freq,cluster" 19p13.3 tight junction protein 3 (zona occludens 3) 9602 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 8830032 693 EGP_SNPS PDR90 NIHPDR 154 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9603 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 8830032 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9604 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 8830032 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9605 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 24601599 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9606 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 24601599 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9607 rs1046428 GSTZ1 2954 14 76864036 NM_001513 NP_001504 C/T M27T plus 24601599 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9608 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 8830032 693 EGP_SNPS PDR90 NIHPDR 154 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9609 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 8830032 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9610 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 8830032 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9611 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 24601599 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9612 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 24601599 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9613 rs1046428 GSTZ1 2954 14 76864036 NM_145870 NP_665877 C/T M82T plus 24601599 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 9614 rs1046515 ADCK2 90956 7 139847771 NM_052853 NP_443085 C/T P622L plus 3248713 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.06 111 "by doubleHit,freq,cluster" 7q32-q34 aarF domain containing kinase 2 9615 rs1046515 ADCK2 90956 7 139847771 NM_052853 NP_443085 C/T P622L plus 6514999 1303 SEQUENOM CEPH CEPH (92) 92 0.11 111 "by doubleHit,freq,cluster" 7q32-q34 aarF domain containing kinase 2 9616 rs1046658 RECK 8434 9 36073430 NM_021111 NP_066934 C/T R170X plus 1518040 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 by freq 9p13-p12 reversion-inducing-cysteine-rich protein with kazal motifs 9617 rs1046668 TNFAIP6 7130 2 152052078 NM_007115 NP_009046 A/G Q144R plus 3296528 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,doubleHit,freq,cluster" 2q24.1 "tumor necrosis factor, alpha-induced protein 6" 9618 rs1046668 TNFAIP6 7130 2 152052078 NM_007115 NP_009046 A/G Q144R plus 3296528 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,freq,cluster" 2q24.1 "tumor necrosis factor, alpha-induced protein 6" 9619 rs1046668 TNFAIP6 7130 2 152052078 NM_007115 NP_009046 A/G Q144R plus 23253087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 2q24.1 "tumor necrosis factor, alpha-induced protein 6" 9620 rs1046668 TNFAIP6 7130 2 152052078 NM_007115 NP_009046 A/G Q144R plus 23253087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 2q24.1 "tumor necrosis factor, alpha-induced protein 6" 9621 rs1046668 TNFAIP6 7130 2 152052078 NM_007115 NP_009046 A/G Q144R plus 23253087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 2q24.1 "tumor necrosis factor, alpha-induced protein 6" 9622 rs1046712 F5 2153 1 166242133 NM_000130 NP_000121 A/C L1285I minus 12674300 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.13 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 9623 rs1046712 F5 2153 1 166242133 NM_000130 NP_000121 A/C L1285I minus 12674300 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 36 0.17 123 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 9624 rs1046974 SAG 6295 2 234037547 NM_000541 NP_000532 A/G V403I plus 16874051 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,submitter,freq,cluster" 2q37.1 S-antigen; retina and pineal gland (arrestin) 9625 rs1046984 BRCA2 675 13 31805411 NM_000059 NP_000050 C/T S599F plus 1518650 1303 SEQUENOM CEPH CEPH (92) 92 0.14 86 by freq 13q12.3 "breast cancer 2, early onset" 9626 rs1047099 SLCO4A1 28231 20 60758483 NM_016354 NP_057438 A/G V78I plus 1518857 1303 SEQUENOM CEPH CEPH (92) 92 0.34 86 by freq 20q13.33 "solute carrier organic anion transporter family, member 4A1" 9627 rs1047286 C3 718 19 6664262 NM_000064 NP_000055 C/T P314L minus 3177315 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.19 102 by freq 19p13.3-p13.2 complement component 3 9628 rs1047303 HSD3B1 3283 1 119769288 NM_000862 NP_000853 A/C T367N plus 2984296 738 YUSUKE JBIC-ALLELE Japanese (752) 1378 0.06 121 "by doubleHit,freq,cluster" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 9629 rs1047303 HSD3B1 3283 1 119769288 NM_000862 NP_000853 A/C T367N plus 6413600 1303 SEQUENOM CEPH CEPH (92) 92 0.48 121 "by doubleHit,freq,cluster" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 9630 rs1047325 S100A2 6273 1 150347100 NM_005978 NP_005969 A/G S61N minus 15433527 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by cluster,freq" 1q21 S100 calcium binding protein A2 9631 rs1047325 S100A2 6273 1 150347100 NM_005978 NP_005969 A/G S61N minus 23213597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q21 S100 calcium binding protein A2 9632 rs1047325 S100A2 6273 1 150347100 NM_005978 NP_005969 A/G S61N minus 23213597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by cluster,freq" 1q21 S100 calcium binding protein A2 9633 rs1047325 S100A2 6273 1 150347100 NM_005978 NP_005969 A/G S61N minus 23213597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 1q21 S100 calcium binding protein A2 9634 rs1047372 PCDHB2 56133 5 140456837 NM_018936 NP_061759 A/G G760D plus 24815868 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 "by cluster,freq" 5q31 protocadherin beta 2 9635 rs1047376 ABCA4 24 1 94218931 NM_000350 NP_000341 A/T L1126H minus 1519393 1303 SEQUENOM CEPH CEPH (92) 92 0.16 86 by freq 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 9636 rs1047552 PSFL 83464 15 61384910 NM_031301 NP_112591 G/T F217L plus 1519714 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by cluster,freq" 15q22.1 anterior pharynx defective 1B-like 9637 rs1047552 PSFL 83464 15 61384910 NM_031301 NP_112591 G/T F217L plus 24050153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 15q22.1 anterior pharynx defective 1B-like 9638 rs1047552 PSFL 83464 15 61384910 NM_031301 NP_112591 G/T F217L plus 24050153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 15q22.1 anterior pharynx defective 1B-like 9639 rs1047552 PSFL 83464 15 61384910 NM_031301 NP_112591 G/T F217L plus 24050153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 15q22.1 anterior pharynx defective 1B-like 9640 rs1047626 SLC30A9 10463 4 41844599 NM_006345 NP_006336 A/G M50V plus 24655325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 4p13-p12 "solute carrier family 30 (zinc transporter), member 9" 9641 rs1047626 SLC30A9 10463 4 41844599 NM_006345 NP_006336 A/G M50V plus 24655325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 4p13-p12 "solute carrier family 30 (zinc transporter), member 9" 9642 rs1047626 SLC30A9 10463 4 41844599 NM_006345 NP_006336 A/G M50V plus 24655325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 4p13-p12 "solute carrier family 30 (zinc transporter), member 9" 9643 rs1047640 SP3 6670 2 174646257 NM_003111 NP_003102 A/G T164A minus 5007331 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.32 121 "by doubleHit,freq,cluster" 2q31 Sp3 transcription factor 9644 rs1047640 SP3 6670 2 174646257 NM_003111 NP_003102 A/G T164A minus 16844292 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq,cluster" 2q31 Sp3 transcription factor 9645 rs1047699 PRR4 11272 12 10890975 NM_007244 NP_009175 C/T Q120R plus 20970444 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 12p13 proline rich 4 (lacrimal) 9646 rs1047699 PRR4 11272 12 10890975 NM_007244 NP_009175 C/T Q120R plus 23788061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 12p13 proline rich 4 (lacrimal) 9647 rs1047699 PRR4 11272 12 10890975 NM_007244 NP_009175 C/T Q120R plus 23788061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 12p13 proline rich 4 (lacrimal) 9648 rs1047699 PRR4 11272 12 10890975 NM_007244 NP_009175 C/T Q120R plus 23788061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 12p13 proline rich 4 (lacrimal) 9649 rs1047740 KDELC1 79070 13 102247203 NM_024089 NP_076994 A/G I114V minus 12251640 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 121 "HapMap,doubleHit,submitter,freq,cluster" 13q33 KDEL (Lys-Asp-Glu-Leu) containing 1 9650 rs1047740 KDELC1 79070 13 102247203 NM_024089 NP_076994 A/G I114V minus 12251640 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "HapMap,doubleHit,submitter,freq,cluster" 13q33 KDEL (Lys-Asp-Glu-Leu) containing 1 9651 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 5605242 693 EGP_SNPS PDR90 NIHPDR 178 0.03 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9652 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 5605242 1303 SEQUENOM CEPH CEPH (92) 92 0.02 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9653 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 12675394 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.03 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9654 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 12675394 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.05 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9655 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 12675394 776 SNP500CANCER AFR1 African / African-American (24) 46 1 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9656 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 12675394 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9657 rs1047769 ERCC5 2073 13 102311945 NM_000123 NP_000114 A/G M254V plus 12675394 778 SNP500CANCER PAC1 Pacific Rim (24) 42 1 118 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 9658 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 5604842 693 EGP_SNPS PDR90 NIHPDR 178 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9659 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 5604842 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9660 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 5604842 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9661 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 23693803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9662 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 23693803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9663 rs1047840 EXO1 9156 1 238368342 NM_003686 NP_003677 A/G E589K plus 23693803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9664 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 5604842 693 EGP_SNPS PDR90 NIHPDR 178 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9665 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 5604842 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9666 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 5604842 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9667 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 23693803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9668 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 23693803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9669 rs1047840 EXO1 9156 1 238368342 NM_006027 NP_006018 A/G E589K plus 23693803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9670 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 5604842 693 EGP_SNPS PDR90 NIHPDR 178 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9671 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 5604842 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9672 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 5604842 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9673 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 23693803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9674 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 23693803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9675 rs1047840 EXO1 9156 1 238368342 NM_130398 NP_569082 A/G E589K plus 23693803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 9676 rs1047855 ENTPD3 956 3 40443900 NM_001248 NP_001239 C/T A496V plus 16972678 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 120 "HapMap,freq,cluster" 3p21.3 ectonucleoside triphosphate diphosphohydrolase 3 9677 rs1047911 MRPL53 116540 2 74611433 NM_053050 NP_444278 G/T A4S minus 3226627 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 120 "HapMap,doubleHit,freq,cluster" 2p13.1 mitochondrial ribosomal protein L53 9678 rs1047911 MRPL53 116540 2 74611433 NM_053050 NP_444278 G/T A4S minus 9975488 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 120 "HapMap,doubleHit,freq,cluster" 2p13.1 mitochondrial ribosomal protein L53 9679 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9680 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9681 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9682 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9683 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9684 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9685 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9686 rs1047972 STK6 6790 20 54394870 NM_003600 NP_003591 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9687 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9688 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9689 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9690 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9691 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9692 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9693 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9694 rs1047972 STK6 6790 20 54394870 NM_198433 NP_940835 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9695 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9696 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9697 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9698 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9699 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9700 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9701 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9702 rs1047972 STK6 6790 20 54394870 NM_198434 NP_940836 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9703 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9704 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9705 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9706 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9707 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9708 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9709 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9710 rs1047972 STK6 6790 20 54394870 NM_198435 NP_940837 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9711 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9712 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9713 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9714 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9715 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9716 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9717 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9718 rs1047972 STK6 6790 20 54394870 NM_198436 NP_940838 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9719 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 3177916 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9720 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 3209034 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9721 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 901 AFFY AfAm 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9722 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 902 AFFY Caucasian 24 0.04 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9723 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 903 AFFY Asian 12 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9724 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 904 AFFY CEPH 12 1 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9725 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 905 AFFY PDpanel 48 0.08 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9726 rs1047972 STK6 6790 20 54394870 NM_198437 NP_940839 A/G I57V minus 8328343 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 9727 rs1047991 PAPD1 55149 10 30669232 NM_018109 NP_060579 A/G R162C plus 20687231 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq" 10p12.1 PAP associated domain containing 1 9728 rs1047991 PAPD1 55149 10 30669232 NM_018109 NP_060579 A/G R162C plus 20687231 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq" 10p12.1 PAP associated domain containing 1 9729 rs1047991 PAPD1 55149 10 30669232 NM_018109 NP_060579 A/G R162C plus 24624214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq" 10p12.1 PAP associated domain containing 1 9730 rs1047991 PAPD1 55149 10 30669232 NM_018109 NP_060579 A/G R162C plus 24624214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq" 10p12.1 PAP associated domain containing 1 9731 rs1047991 PAPD1 55149 10 30669232 NM_018109 NP_060579 A/G R162C plus 24624214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq" 10p12.1 PAP associated domain containing 1 9732 rs1048046 SLC22A18 5002 11 2881167 NM_002555 NP_002546 A/G A6T plus 16547061 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 "by doubleHit,freq,cluster" 11p15.5 "solute carrier family 22 (organic cation transporter), member 18" 9733 rs1048046 SLC22A18 5002 11 2881167 NM_183233 NP_899056 A/G A6T plus 16547061 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 "by doubleHit,freq,cluster" 11p15.5 "solute carrier family 22 (organic cation transporter), member 18" 9734 rs1048047 SLC22A18 5002 11 2881186 NM_002555 NP_002546 A/G R12Q plus 3550951 1303 SEQUENOM CEPH CEPH (92) 92 0.24 121 "by doubleHit,freq,cluster" 11p15.5 "solute carrier family 22 (organic cation transporter), member 18" 9735 rs1048047 SLC22A18 5002 11 2881186 NM_183233 NP_899056 A/G R12Q plus 3550951 1303 SEQUENOM CEPH CEPH (92) 92 0.24 121 "by doubleHit,freq,cluster" 11p15.5 "solute carrier family 22 (organic cation transporter), member 18" 9736 rs1048101 ADRA1A 148 8 26683945 NM_000680 NP_000671 C/T C347R minus 2324495 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9737 rs1048101 ADRA1A 148 8 26683945 NM_000680 NP_000671 C/T C347R minus 2324495 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9738 rs1048101 ADRA1A 148 8 26683945 NM_000680 NP_000671 C/T C347R minus 24539641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9739 rs1048101 ADRA1A 148 8 26683945 NM_000680 NP_000671 C/T C347R minus 24539641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9740 rs1048101 ADRA1A 148 8 26683945 NM_000680 NP_000671 C/T C347R minus 24539641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9741 rs1048101 ADRA1A 148 8 26683945 NM_033302 NP_150645 C/T C347R minus 2324495 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9742 rs1048101 ADRA1A 148 8 26683945 NM_033302 NP_150645 C/T C347R minus 2324495 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9743 rs1048101 ADRA1A 148 8 26683945 NM_033302 NP_150645 C/T C347R minus 24539641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9744 rs1048101 ADRA1A 148 8 26683945 NM_033302 NP_150645 C/T C347R minus 24539641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9745 rs1048101 ADRA1A 148 8 26683945 NM_033302 NP_150645 C/T C347R minus 24539641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9746 rs1048101 ADRA1A 148 8 26683945 NM_033304 NP_150647 C/T C347R minus 2324495 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9747 rs1048101 ADRA1A 148 8 26683945 NM_033304 NP_150647 C/T C347R minus 2324495 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9748 rs1048101 ADRA1A 148 8 26683945 NM_033304 NP_150647 C/T C347R minus 24539641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9749 rs1048101 ADRA1A 148 8 26683945 NM_033304 NP_150647 C/T C347R minus 24539641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9750 rs1048101 ADRA1A 148 8 26683945 NM_033304 NP_150647 C/T C347R minus 24539641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 9751 rs1048108 BARD1 580 2 215499730 NM_000465 NP_000456 C/T P24S minus 1520704 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 9752 rs1048108 BARD1 580 2 215499730 NM_000465 NP_000456 C/T P24S minus 23927969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 9753 rs1048108 BARD1 580 2 215499730 NM_000465 NP_000456 C/T P24S minus 23927969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 9754 rs1048108 BARD1 580 2 215499730 NM_000465 NP_000456 C/T P24S minus 23927969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 9755 rs1048135 NMI 9111 2 151964924 NM_004688 NP_004679 C/T S16L minus 21598065 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 by freq 2p24.3-q21.3 N-myc (and STAT) interactor 9756 rs1048135 NMI 9111 2 151964924 NM_004688 NP_004679 C/T S16L minus 24309331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 2p24.3-q21.3 N-myc (and STAT) interactor 9757 rs1048135 NMI 9111 2 151964924 NM_004688 NP_004679 C/T S16L minus 24309331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 2p24.3-q21.3 N-myc (and STAT) interactor 9758 rs1048135 NMI 9111 2 151964924 NM_004688 NP_004679 C/T S16L minus 24309331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 2p24.3-q21.3 N-myc (and STAT) interactor 9759 rs1048152 CSN3 1448 4 71295716 NM_005212 NP_005203 G/T R110L plus 4961808 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by cluster,freq" 4q21.1 casein kappa 9760 rs1048152 CSN3 1448 4 71295716 NM_005212 NP_005203 G/T R110L plus 23953512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "by cluster,freq" 4q21.1 casein kappa 9761 rs1048152 CSN3 1448 4 71295716 NM_005212 NP_005203 G/T R110L plus 23953512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 4q21.1 casein kappa 9762 rs1048152 CSN3 1448 4 71295716 NM_005212 NP_005203 G/T R110L plus 23953512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by cluster,freq" 4q21.1 casein kappa 9763 rs1048167 EFG2 84340 5 74053255 NM_032380 NP_115756 C/T R774Q plus 10269010 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9764 rs1048167 EFG2 84340 5 74053255 NM_032380 NP_115756 C/T R774Q plus 10269010 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9765 rs1048167 EFG2 84340 5 74053255 NM_032380 NP_115756 C/T R774Q plus 23750377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9766 rs1048167 EFG2 84340 5 74053255 NM_032380 NP_115756 C/T R774Q plus 23750377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9767 rs1048167 EFG2 84340 5 74053255 NM_032380 NP_115756 C/T R774Q plus 23750377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9768 rs1048167 EFG2 84340 5 74053255 NM_170691 NP_733792 C/T R727Q plus 10269010 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9769 rs1048167 EFG2 84340 5 74053255 NM_170691 NP_733792 C/T R727Q plus 10269010 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9770 rs1048167 EFG2 84340 5 74053255 NM_170691 NP_733792 C/T R727Q plus 23750377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9771 rs1048167 EFG2 84340 5 74053255 NM_170691 NP_733792 C/T R727Q plus 23750377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9772 rs1048167 EFG2 84340 5 74053255 NM_170691 NP_733792 C/T R727Q plus 23750377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q13 mitochondrial elongation factor G2 9773 rs1048197 SMPD2 6610 6 109869025 NM_003080 NP_003071 A/G P3L minus 1520899 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 9774 rs1048197 SMPD2 6610 6 109869025 NM_003080 NP_003071 A/G P3L minus 1520899 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,submitter,freq" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 9775 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.48 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9776 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9777 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 902 AFFY Caucasian 24 0.21 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9778 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 903 AFFY Asian 12 0.33 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9779 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9780 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 4990544 905 AFFY PDpanel 46 0.22 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9781 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 23925765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9782 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 23925765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9783 rs1048201 NUDT6 11162 4 124171913 NM_007083 NP_009014 C/T R209Q plus 23925765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9784 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.48 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9785 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9786 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 902 AFFY Caucasian 24 0.21 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9787 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 903 AFFY Asian 12 0.33 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9788 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9789 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 4990544 905 AFFY PDpanel 46 0.22 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9790 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 23925765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9791 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 23925765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9792 rs1048201 NUDT6 11162 4 124171913 NM_198041 NP_932158 C/T R40Q plus 23925765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 9793 rs1048218 BDNF 627 11 27636463 NM_001709 NP_001700 G/T Q75H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9794 rs1048218 BDNF 627 11 27636463 NM_001709 NP_001700 G/T Q75H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9795 rs1048218 BDNF 627 11 27636463 NM_001709 NP_001700 G/T Q75H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9796 rs1048218 BDNF 627 11 27636463 NM_001709 NP_001700 G/T Q75H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9797 rs1048218 BDNF 627 11 27636463 NM_170731 NP_733927 G/T Q83H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9798 rs1048218 BDNF 627 11 27636463 NM_170731 NP_733927 G/T Q83H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9799 rs1048218 BDNF 627 11 27636463 NM_170731 NP_733927 G/T Q83H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9800 rs1048218 BDNF 627 11 27636463 NM_170731 NP_733927 G/T Q83H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9801 rs1048218 BDNF 627 11 27636463 NM_170732 NP_733928 G/T Q75H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9802 rs1048218 BDNF 627 11 27636463 NM_170732 NP_733928 G/T Q75H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9803 rs1048218 BDNF 627 11 27636463 NM_170732 NP_733928 G/T Q75H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9804 rs1048218 BDNF 627 11 27636463 NM_170732 NP_733928 G/T Q75H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9805 rs1048218 BDNF 627 11 27636463 NM_170733 NP_733929 G/T Q75H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9806 rs1048218 BDNF 627 11 27636463 NM_170733 NP_733929 G/T Q75H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9807 rs1048218 BDNF 627 11 27636463 NM_170733 NP_733929 G/T Q75H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9808 rs1048218 BDNF 627 11 27636463 NM_170733 NP_733929 G/T Q75H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9809 rs1048218 BDNF 627 11 27636463 NM_170734 NP_733930 G/T Q90H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9810 rs1048218 BDNF 627 11 27636463 NM_170734 NP_733930 G/T Q90H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9811 rs1048218 BDNF 627 11 27636463 NM_170734 NP_733930 G/T Q90H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9812 rs1048218 BDNF 627 11 27636463 NM_170734 NP_733930 G/T Q90H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9813 rs1048218 BDNF 627 11 27636463 NM_170735 NP_733931 G/T Q75H minus 1520953 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9814 rs1048218 BDNF 627 11 27636463 NM_170735 NP_733931 G/T Q75H minus 1520953 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9815 rs1048218 BDNF 627 11 27636463 NM_170735 NP_733931 G/T Q75H minus 1520953 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.03 86 by freq 11p13 brain-derived neurotrophic factor 9816 rs1048218 BDNF 627 11 27636463 NM_170735 NP_733931 G/T Q75H minus 1520953 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 11p13 brain-derived neurotrophic factor 9817 rs1048220 BDNF 627 11 27636314 NM_001709 NP_001700 G/T R125M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9818 rs1048220 BDNF 627 11 27636314 NM_001709 NP_001700 G/T R125M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9819 rs1048220 BDNF 627 11 27636314 NM_001709 NP_001700 G/T R125M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9820 rs1048220 BDNF 627 11 27636314 NM_001709 NP_001700 G/T R125M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9821 rs1048220 BDNF 627 11 27636314 NM_170731 NP_733927 G/T R133M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9822 rs1048220 BDNF 627 11 27636314 NM_170731 NP_733927 G/T R133M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9823 rs1048220 BDNF 627 11 27636314 NM_170731 NP_733927 G/T R133M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9824 rs1048220 BDNF 627 11 27636314 NM_170731 NP_733927 G/T R133M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9825 rs1048220 BDNF 627 11 27636314 NM_170732 NP_733928 G/T R125M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9826 rs1048220 BDNF 627 11 27636314 NM_170732 NP_733928 G/T R125M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9827 rs1048220 BDNF 627 11 27636314 NM_170732 NP_733928 G/T R125M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9828 rs1048220 BDNF 627 11 27636314 NM_170732 NP_733928 G/T R125M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9829 rs1048220 BDNF 627 11 27636314 NM_170733 NP_733929 G/T R125M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9830 rs1048220 BDNF 627 11 27636314 NM_170733 NP_733929 G/T R125M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9831 rs1048220 BDNF 627 11 27636314 NM_170733 NP_733929 G/T R125M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9832 rs1048220 BDNF 627 11 27636314 NM_170733 NP_733929 G/T R125M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9833 rs1048220 BDNF 627 11 27636314 NM_170734 NP_733930 G/T R140M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9834 rs1048220 BDNF 627 11 27636314 NM_170734 NP_733930 G/T R140M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9835 rs1048220 BDNF 627 11 27636314 NM_170734 NP_733930 G/T R140M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9836 rs1048220 BDNF 627 11 27636314 NM_170734 NP_733930 G/T R140M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9837 rs1048220 BDNF 627 11 27636314 NM_170735 NP_733931 G/T R125M minus 1520956 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9838 rs1048220 BDNF 627 11 27636314 NM_170735 NP_733931 G/T R125M minus 1520956 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9839 rs1048220 BDNF 627 11 27636314 NM_170735 NP_733931 G/T R125M minus 1520956 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 11p13 brain-derived neurotrophic factor 9840 rs1048220 BDNF 627 11 27636314 NM_170735 NP_733931 G/T R125M minus 1520956 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 11p13 brain-derived neurotrophic factor 9841 rs1048328 KLK11 11012 19 56219176 NM_006853 NP_006844 C/T R134C minus 16787054 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "by cluster,freq" 19q13.3-q13.4 kallikrein 11 9842 rs1048328 KLK11 11012 19 56219176 NM_144947 NP_659196 C/T R166C minus 16787054 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "by cluster,freq" 19q13.3-q13.4 kallikrein 11 9843 rs1048425 GBP1 2633 1 89234667 NM_002053 NP_002044 C/G T349S minus 3177462 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.27 98 "by doubleHit,freq" 1p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa" 9844 rs1048430 HLA-DQA1 3117 6 32718465 NM_002122 NP_002113 C/G F238L plus 24816176 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 9845 rs1048443 GBP1 2633 1 89233862 NM_002053 NP_002044 C/G A409G plus 2920698 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.44 123 "by doubleHit,freq" 1p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa" 9846 rs1048443 GBP1 2633 1 89233862 NM_002053 NP_002044 C/G A409G plus 2920698 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 123 "by doubleHit,freq" 1p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa" 9847 rs1048443 GBP1 2633 1 89233862 NM_002053 NP_002044 C/G A409G plus 2920698 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.16 123 "by doubleHit,freq" 1p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa" 9848 rs1048443 GBP1 2633 1 89233862 NM_002053 NP_002044 C/G A409G plus 24816179 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by doubleHit,freq" 1p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa" 9849 rs1048478 ZNF324 25799 19 63674911 NM_014347 NP_055162 A/T K414X plus 1521425 1303 SEQUENOM CEPH CEPH (92) 92 0.38 86 by freq 19q13.43 zinc finger protein 324 9850 rs1048621 SDCBP2 27111 20 1241046 NM_015685 NP_056500 C/T R138C minus 3209596 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9851 rs1048621 SDCBP2 27111 20 1241046 NM_015685 NP_056500 C/T R138C minus 8430877 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9852 rs1048621 SDCBP2 27111 20 1241046 NM_015685 NP_056500 C/T R138C minus 24596226 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9853 rs1048621 SDCBP2 27111 20 1241046 NM_015685 NP_056500 C/T R138C minus 24596226 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9854 rs1048621 SDCBP2 27111 20 1241046 NM_015685 NP_056500 C/T R138C minus 24596226 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9855 rs1048621 SDCBP2 27111 20 1241046 NM_080489 NP_536737 C/T R138C minus 3209596 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9856 rs1048621 SDCBP2 27111 20 1241046 NM_080489 NP_536737 C/T R138C minus 8430877 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9857 rs1048621 SDCBP2 27111 20 1241046 NM_080489 NP_536737 C/T R138C minus 24596226 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9858 rs1048621 SDCBP2 27111 20 1241046 NM_080489 NP_536737 C/T R138C minus 24596226 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9859 rs1048621 SDCBP2 27111 20 1241046 NM_080489 NP_536737 C/T R138C minus 24596226 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 9860 rs1048661 LOXL1 4016 15 72006599 NM_005576 NP_005567 G/T R141L plus 4929216 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.44 108 "by cluster,freq" 15q22 lysyl oxidase-like 1 9861 rs1048661 LOXL1 4016 15 72006599 NM_005576 NP_005567 G/T R141L plus 4929216 1303 SEQUENOM CEPH CEPH (92) 92 0.04 108 "by cluster,freq" 15q22 lysyl oxidase-like 1 9862 rs1048714 CDC14A 8556 1 100633008 NM_003672 NP_003663 G/T W182C plus 1521862 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9863 rs1048714 CDC14A 8556 1 100633008 NM_003672 NP_003663 G/T W182C plus 1521862 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9864 rs1048714 CDC14A 8556 1 100633008 NM_033312 NP_201569 G/T W182C plus 1521862 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9865 rs1048714 CDC14A 8556 1 100633008 NM_033312 NP_201569 G/T W182C plus 1521862 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9866 rs1048714 CDC14A 8556 1 100633008 NM_033313 NP_201570 G/T W182C plus 1521862 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9867 rs1048714 CDC14A 8556 1 100633008 NM_033313 NP_201570 G/T W182C plus 1521862 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 1p21 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 9868 rs1048719 GM2A 2760 5 150613025 NM_000405 NP_000396 A/G A19T plus 3213721 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.19 123 "HapMap,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 9869 rs1048719 GM2A 2760 5 150613025 NM_000405 NP_000396 A/G A19T plus 3213721 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 5q31.3-q33.1 GM2 ganglioside activator 9870 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 3238833 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.47 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9871 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 14386151 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9872 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 14386151 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9873 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 24599881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9874 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 24599881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9875 rs1048755 MJD 4287 14 91618538 NM_004993 NP_004984 A/G V212M minus 24599881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9876 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 3238833 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.47 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9877 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 14386151 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9878 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 14386151 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9879 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 24599881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9880 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 24599881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9881 rs1048755 MJD 4287 14 91618538 NM_030660 NP_109376 A/G V157M minus 24599881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 14q24.3-q32.2 "Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3)" 9882 rs1048801 LILRB4 11006 19 59871176 NM_006847 NP_006838 A/G Q414R plus 3209922 738 YUSUKE JBIC-ALLELE Japanese (752) 712 0.31 108 "by cluster,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 9883 rs1048889 DDX54 79039 12 112059586 NM_024072 NP_076977 C/T P822L minus 1522193 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 by freq 12q24.21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 9884 rs1048906 IKIP 121457 12 97510091 NM_201612 NP_963906 A/G G265S minus 12192317 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.1 IKK interacting protein 9885 rs1048906 IKIP 121457 12 97510091 NM_201612 NP_963906 A/G G265S minus 12192317 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.1 IKK interacting protein 9886 rs1048906 IKIP 121457 12 97510091 NM_201612 NP_963906 A/G G265S minus 23431088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.1 IKK interacting protein 9887 rs1048906 IKIP 121457 12 97510091 NM_201612 NP_963906 A/G G265S minus 23431088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.1 IKK interacting protein 9888 rs1048906 IKIP 121457 12 97510091 NM_201612 NP_963906 A/G G265S minus 23431088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.1 IKK interacting protein 9889 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 1522321 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9890 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 1522321 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9891 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 1522321 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.27 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9892 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 3176140 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.02 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9893 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 4044521 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9894 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 5586386 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.12 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9895 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 5586386 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.12 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9896 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 5586386 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9897 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 5586386 777 SNP500CANCER HISP1 Hispanic (23) 44 0.18 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9898 rs1048943 CYP1A1 1543 15 72800038 NM_000499 NP_000490 A/G I462V minus 5586386 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.17 116 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 9899 rs1048944 RAI14 26064 5 34860312 NM_015577 NP_056392 G/T A870S plus 1522325 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 by freq 5p13.3-p13.2 retinoic acid induced 14 9900 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 3255334 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9901 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 4385204 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9902 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9903 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9904 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9905 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9906 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9907 rs1048945 APEX1 328 14 19994007 NM_001641 NP_001632 C/G Q51H plus 5586241 1303 SEQUENOM CEPH CEPH (92) 92 0.06 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9908 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 3255334 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9909 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 4385204 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9910 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9911 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9912 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9913 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9914 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9915 rs1048945 APEX1 328 14 19994007 NM_080648 NP_542379 C/G Q51H plus 5586241 1303 SEQUENOM CEPH CEPH (92) 92 0.06 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9916 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 3255334 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9917 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 4385204 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9918 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9919 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9920 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9921 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9922 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9923 rs1048945 APEX1 328 14 19994007 NM_080649 NP_542380 C/G Q51H plus 5586241 1303 SEQUENOM CEPH CEPH (92) 92 0.06 116 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 9924 rs1049110 HLA-DQB2 3120 6 32834781 NM_182549 NP_872355 A/G R161Q minus 4474154 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.3 123 "by doubleHit,freq,cluster" 6p21 "major histocompatibility complex, class II, DQ beta 2" 9925 rs1049125 PNLIPRP1 5407 10 118358596 NM_006229 NP_006220 C/T L461P plus 19174353 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 10q26.12 pancreatic lipase-related protein 1 9926 rs1049125 PNLIPRP1 5407 10 118358596 NM_006229 NP_006220 C/T L461P plus 24600233 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 10q26.12 pancreatic lipase-related protein 1 9927 rs1049125 PNLIPRP1 5407 10 118358596 NM_006229 NP_006220 C/T L461P plus 24600233 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q26.12 pancreatic lipase-related protein 1 9928 rs1049125 PNLIPRP1 5407 10 118358596 NM_006229 NP_006220 C/T L461P plus 24600233 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 10q26.12 pancreatic lipase-related protein 1 9929 rs1049205 PPL 5493 16 4882100 NM_002705 NP_002696 A/G R589Q minus 1522760 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 121 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 periplakin 9930 rs1049205 PPL 5493 16 4882100 NM_002705 NP_002696 A/G R589Q minus 16724521 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 periplakin 9931 rs1049254 CYBA 1535 16 87237329 NM_000101 NP_000092 C/T V174A minus 24694530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 9932 rs1049254 CYBA 1535 16 87237329 NM_000101 NP_000092 C/T V174A minus 24694530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.18 123 "by doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 9933 rs1049254 CYBA 1535 16 87237329 NM_000101 NP_000092 C/T V174A minus 24694530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by doubleHit,freq,cluster" 16q24 "cytochrome b-245, alpha polypeptide" 9934 rs1049296 TF 7018 3 134977052 NM_001063 NP_001054 C/T P589S plus 8820437 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.07 120 "by cluster,freq" 3q22.1 transferrin 9935 rs1049296 TF 7018 3 134977052 NM_001063 NP_001054 C/T P589S plus 8820437 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 120 "by cluster,freq" 3q22.1 transferrin 9936 rs1049296 TF 7018 3 134977052 NM_001063 NP_001054 C/T P589S plus 8820437 1303 SEQUENOM CEPH CEPH (92) 92 0.12 120 "by cluster,freq" 3q22.1 transferrin 9937 rs1049306 PDHX 8050 11 34894845 NM_003477 NP_003468 C/T R23C plus 12148948 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 11p13 "pyruvate dehydrogenase complex, component X" 9938 rs1049306 PDHX 8050 11 34894845 NM_003477 NP_003468 C/T R23C plus 24797023 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 11p13 "pyruvate dehydrogenase complex, component X" 9939 rs1049306 PDHX 8050 11 34894845 NM_003477 NP_003468 C/T R23C plus 24816514 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 11p13 "pyruvate dehydrogenase complex, component X" 9940 rs1049416 SEC14L1 6397 17 72698525 NM_003003 NP_002994 A/G V37M plus 1523161 1303 SEQUENOM CEPH CEPH (92) 92 0.18 106 by freq 17q25.1-17q25.2 SEC14-like 1 (S. cerevisiae) 9941 rs1049434 SLC16A1 6566 1 113168588 NM_003051 NP_003042 A/T D490E minus 4975961 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.35 123 "by doubleHit,freq,cluster" 1p12 "solute carrier family 16 (monocarboxylic acid transporters), member 1" 9942 rs1049434 SLC16A1 6566 1 113168588 NM_003051 NP_003042 A/T D490E minus 9818215 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by doubleHit,freq,cluster" 1p12 "solute carrier family 16 (monocarboxylic acid transporters), member 1" 9943 rs1049434 SLC16A1 6566 1 113168588 NM_003051 NP_003042 A/T D490E minus 23849258 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p12 "solute carrier family 16 (monocarboxylic acid transporters), member 1" 9944 rs1049434 SLC16A1 6566 1 113168588 NM_003051 NP_003042 A/T D490E minus 23849258 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1p12 "solute carrier family 16 (monocarboxylic acid transporters), member 1" 9945 rs1049434 SLC16A1 6566 1 113168588 NM_003051 NP_003042 A/T D490E minus 23849258 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 1p12 "solute carrier family 16 (monocarboxylic acid transporters), member 1" 9946 rs1049544 SPARCL1 8404 4 88772815 NM_004684 NP_004675 C/G H106D minus 4949430 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 9947 rs1049544 SPARCL1 8404 4 88772815 NM_004684 NP_004675 C/G H106D minus 23881462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 9948 rs1049544 SPARCL1 8404 4 88772815 NM_004684 NP_004675 C/G H106D minus 23881462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 9949 rs1049544 SPARCL1 8404 4 88772815 NM_004684 NP_004675 C/G H106D minus 23881462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 9950 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 3173106 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.2 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9951 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 3190997 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.37 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9952 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 3613971 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9953 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 3613971 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9954 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 24578013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9955 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 24578013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9956 rs1049550 ANXA11 311 10 81916682 NM_001157 NP_001148 C/T R230C minus 24578013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9957 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 3173106 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.2 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9958 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 3190997 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.37 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9959 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 3613971 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9960 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 3613971 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9961 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 24578013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9962 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 24578013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9963 rs1049550 ANXA11 311 10 81916682 NM_145868 NP_665875 C/T R230C minus 24578013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9964 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 3173106 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.2 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9965 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 3190997 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.37 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9966 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 3613971 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9967 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 3613971 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9968 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 24578013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9969 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 24578013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9970 rs1049550 ANXA11 311 10 81916682 NM_145869 NP_665876 C/T R230C minus 24578013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 10q23 annexin A11 9971 rs1049564 NP 4860 14 20010446 NM_000270 NP_000261 C/T G51S minus 23617308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 14q13.1 nucleoside phosphorylase 9972 rs1049564 NP 4860 14 20010446 NM_000270 NP_000261 C/T G51S minus 23617308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 14q13.1 nucleoside phosphorylase 9973 rs1049564 NP 4860 14 20010446 NM_000270 NP_000261 C/T G51S minus 23617308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 14q13.1 nucleoside phosphorylase 9974 rs1049674 ASNS 440 7 97133220 NM_001673 NP_001664 A/T V210E minus 1523619 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9975 rs1049674 ASNS 440 7 97133220 NM_001673 NP_001664 A/T V210E minus 1523619 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9976 rs1049674 ASNS 440 7 97133220 NM_133436 NP_597680 A/T V210E minus 1523619 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9977 rs1049674 ASNS 440 7 97133220 NM_133436 NP_597680 A/T V210E minus 1523619 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9978 rs1049674 ASNS 440 7 97133220 NM_183356 NP_899199 A/T V210E minus 1523619 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9979 rs1049674 ASNS 440 7 97133220 NM_183356 NP_899199 A/T V210E minus 1523619 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,submitter,freq" 7q21.3 asparagine synthetase 9980 rs1049683 CABYR 26256 18 19990931 NM_012189 NP_036321 A/C S490A minus 23800433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9981 rs1049683 CABYR 26256 18 19990931 NM_012189 NP_036321 A/C S490A minus 23800433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9982 rs1049683 CABYR 26256 18 19990931 NM_012189 NP_036321 A/C S490A minus 23800433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9983 rs1049683 CABYR 26256 18 19990931 NM_153768 NP_722452 A/C S472A minus 23800433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9984 rs1049683 CABYR 26256 18 19990931 NM_153768 NP_722452 A/C S472A minus 23800433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9985 rs1049683 CABYR 26256 18 19990931 NM_153768 NP_722452 A/C S472A minus 23800433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 9986 rs1049742 ABP1 26 7 149992201 NM_001091 NP_001082 C/T S332F plus 17939745 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,freq,cluster" 7q34-q36 amiloride binding protein 1 (amine oxidase (copper-containing)) 9987 rs1049925 PHC1 1911 12 8978165 NM_004426 NP_004417 C/T T693A minus 24698787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 12p13 polyhomeotic-like 1 (Drosophila) 9988 rs1049925 PHC1 1911 12 8978165 NM_004426 NP_004417 C/T T693A minus 24698787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 12p13 polyhomeotic-like 1 (Drosophila) 9989 rs1049925 PHC1 1911 12 8978165 NM_004426 NP_004417 C/T T693A minus 24698787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 12p13 polyhomeotic-like 1 (Drosophila) 9990 rs1049925 PHC1 1911 12 8978165 NM_004426 NP_004417 C/T T693A minus 24796441 1303 SEQUENOM CEPH CEPH (92) 184 0.21 123 "by doubleHit,submitter,freq,cluster" 12p13 polyhomeotic-like 1 (Drosophila) 9991 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9992 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9993 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9994 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9995 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9996 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9997 rs1049968 CYP11A1 1583 15 72422458 NM_000781 NP_000772 C/G I301M minus 5586367 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,cluster" 15q23-q24 "cytochrome P450, family 11, subfamily A, polypeptide 1" 9998 rs1049970 CDH5 1003 16 64989924 NM_001795 NP_001786 C/T I517T plus 14254569 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,freq,cluster" 16q22.1 "cadherin 5, type 2, VE-cadherin (vascular epithelium)" 9999 rs1050101 SMARCD3 6604 7 150377286 NM_003078 NP_003069 C/T P157S minus 1524412 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 7q35-q36 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3" 10000 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 4928179 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.28 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10001 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.44 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10002 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10003 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10004 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10005 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10006 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 901 AFFY AfAm 12 0.25 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10007 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 902 AFFY Caucasian 24 0.25 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10008 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 903 AFFY Asian 12 0.25 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10009 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 904 AFFY CEPH 12 0.25 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10010 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 905 AFFY PDpanel 46 0.35 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10011 rs1050110 ADPRTL1 143 13 23907485 NM_006437 NP_006428 C/G G1265A minus 5586211 1303 SEQUENOM CEPH CEPH (92) 92 0.49 116 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10012 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 4928181 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.29 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10013 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.44 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10014 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10015 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10016 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10017 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10018 rs1050112 ADPRTL1 143 13 23907297 NM_006437 NP_006428 A/C P1328T minus 5586216 1303 SEQUENOM CEPH CEPH (92) 46 0.5 120 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10019 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.06 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10020 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10021 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10022 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10023 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10024 rs1050114 ADPRTL1 143 13 23907288 NM_006437 NP_006428 A/G A1331T minus 5586217 1303 SEQUENOM CEPH CEPH (92) 92 0.06 113 "by cluster,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 10025 rs1050152 SLC22A4 6583 5 131704219 NM_003059 NP_003050 C/T L503F plus 16339650 1141 PHARMGKB_PMT PA129593643 552 0.19 123 "by cluster,freq" 5q31.1 "solute carrier family 22 (organic cation transporter), member 4" 10026 rs1050152 SLC22A4 6583 5 131704219 NM_003059 NP_003050 C/T L503F plus 24379843 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 5q31.1 "solute carrier family 22 (organic cation transporter), member 4" 10027 rs1050152 SLC22A4 6583 5 131704219 NM_003059 NP_003050 C/T L503F plus 24379843 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 5q31.1 "solute carrier family 22 (organic cation transporter), member 4" 10028 rs1050152 SLC22A4 6583 5 131704219 NM_003059 NP_003050 C/T L503F plus 24379843 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q31.1 "solute carrier family 22 (organic cation transporter), member 4" 10029 rs1050160 GLUD1 2746 10 88844232 NM_005271 NP_005262 A/G R92Q minus 24797030 1303 SEQUENOM CEPH CEPH (92) 184 0.28 123 by freq 10q23.3 glutamate dehydrogenase 1 10030 rs1050348 LAMA4 3910 6 112600565 NM_002290 NP_002281 C/T Y491H minus 3156356 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 6q21 "laminin, alpha 4" 10031 rs1050348 LAMA4 3910 6 112600565 NM_002290 NP_002281 C/T Y491H minus 24413213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 6q21 "laminin, alpha 4" 10032 rs1050348 LAMA4 3910 6 112600565 NM_002290 NP_002281 C/T Y491H minus 24413213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6q21 "laminin, alpha 4" 10033 rs1050348 LAMA4 3910 6 112600565 NM_002290 NP_002281 C/T Y491H minus 24413213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 6q21 "laminin, alpha 4" 10034 rs1050349 LAMA4 3910 6 112564076 NM_002290 NP_002281 C/G P1112R minus 2941526 1303 SEQUENOM CEPH CEPH (92) 92 0.15 116 "by doubleHit,submitter,cluster" 6q21 "laminin, alpha 4" 10035 rs1050354 PPIG 9360 2 170318610 NM_004792 NP_004783 A/T D445E plus 11496510 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 10036 rs1050354 PPIG 9360 2 170318610 NM_004792 NP_004783 A/T D445E plus 11496510 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 10037 rs1050354 PPIG 9360 2 170318610 NM_004792 NP_004783 A/T D445E plus 24369174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 10038 rs1050354 PPIG 9360 2 170318610 NM_004792 NP_004783 A/T D445E plus 24369174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 10039 rs1050354 PPIG 9360 2 170318610 NM_004792 NP_004783 A/T D445E plus 24369174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31.1 peptidyl-prolyl isomerase G (cyclophilin G) 10040 rs1050379 HLA-B 3106 6 31432133 NM_005514 NP_005505 C/T H137Y minus 20421909 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class I, B" 10041 rs1050388 HLA-B 3106 6 31432485 NM_005514 NP_005505 A/G S101N minus 24796266 1303 SEQUENOM CEPH CEPH (92) 184 0.26 123 by freq 6p21.3 "major histocompatibility complex, class I, B" 10042 rs1050388 HLA-B 3106 6 31432485 NM_005514 NP_005505 A/G S101N minus 24797038 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 by freq 6p21.3 "major histocompatibility complex, class I, B" 10043 rs1050388 HLA-B 3106 6 31432485 NM_005514 NP_005505 A/G S101N minus 24798299 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 6p21.3 "major histocompatibility complex, class I, B" 10044 rs1050418 SRPK2 6733 7 104360685 NM_182691 NP_872633 A/C L615I minus 1525069 1303 SEQUENOM CEPH CEPH (92) 92 0.27 106 by freq 7q22-q31.1 SFRS protein kinase 2 10045 rs1050418 SRPK2 6733 7 104360685 NM_182692 NP_872634 A/C L626I minus 1525069 1303 SEQUENOM CEPH CEPH (92) 92 0.27 106 by freq 7q22-q31.1 SFRS protein kinase 2 10046 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 5586547 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10047 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 5586547 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.19 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10048 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 5586547 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10049 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 5586547 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10050 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 5586547 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10051 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 12568572 693 EGP_SNPS PDR90 NIHPDR 178 0.17 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10052 rs1050450 GPX1 2876 3 49369838 NM_000581 NP_000572 C/T P200L minus 24787925 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 10053 rs1050457 PALM 5064 19 682144 NM_002579 NP_002570 A/G T107A plus 14705029 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "by doubleHit,freq,cluster" 19p13.3 paralemmin 10054 rs1050501 FCGR2B 2213 1 158375465 NM_004001 NP_003992 C/T I225T plus 19838944 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIb, receptor for (CD32)" 10055 rs1050501 FCGR2B 2213 1 158375465 NM_004001 NP_003992 C/T I225T plus 23842385 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIb, receptor for (CD32)" 10056 rs1050501 FCGR2B 2213 1 158375465 NM_004001 NP_003992 C/T I225T plus 23842385 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIb, receptor for (CD32)" 10057 rs1050501 FCGR2B 2213 1 158375465 NM_004001 NP_003992 C/T I225T plus 23842385 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIb, receptor for (CD32)" 10058 rs1050501 FCGR2C 9103 1 158375465 NM_201563 NP_963857 C/T I205T plus 19838944 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by doubleHit,freq,cluster" 1 "Fc fragment of IgG, low affinity IIc, receptor for (CD32)" 10059 rs1050501 FCGR2C 9103 1 158375465 NM_201563 NP_963857 C/T I205T plus 23842385 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1 "Fc fragment of IgG, low affinity IIc, receptor for (CD32)" 10060 rs1050501 FCGR2C 9103 1 158375465 NM_201563 NP_963857 C/T I205T plus 23842385 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1 "Fc fragment of IgG, low affinity IIc, receptor for (CD32)" 10061 rs1050501 FCGR2C 9103 1 158375465 NM_201563 NP_963857 C/T I205T plus 23842385 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1 "Fc fragment of IgG, low affinity IIc, receptor for (CD32)" 10062 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 3217070 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.18 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10063 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 3217070 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.3 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10064 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 3217070 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10065 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 24705757 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10066 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 24705757 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10067 rs1050565 BLMH 642 17 25600202 NM_000386 NP_000377 A/G I443V minus 24705757 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 17q11.2 bleomycin hydrolase 10068 rs1050710 NELL2 4753 12 43203447 NM_006159 NP_006150 C/T P631L minus 1525610 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 106 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 10069 rs1050710 NELL2 4753 12 43203447 NM_006159 NP_006150 C/T P631L minus 1525610 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 106 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 10070 rs1050710 NELL2 4753 12 43203447 NM_006159 NP_006150 C/T P631L minus 1525610 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 106 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 10071 rs1050710 NELL2 4753 12 43203447 NM_006159 NP_006150 C/T P631L minus 1525610 1303 SEQUENOM CEPH CEPH (92) 92 1 106 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 10072 rs1050767 MKI67 4288 10 129791936 NM_002417 NP_002408 A/C T2720P minus 14315599 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 10073 rs1050784 KRT15 3866 17 36928167 NM_002275 NP_002266 A/G T147A minus 14280266 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 17q21.2 keratin 15 10074 rs1050784 KRT15 3866 17 36928167 NM_002275 NP_002266 A/G T147A minus 23597939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 17q21.2 keratin 15 10075 rs1050784 KRT15 3866 17 36928167 NM_002275 NP_002266 A/G T147A minus 23597939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 17q21.2 keratin 15 10076 rs1050784 KRT15 3866 17 36928167 NM_002275 NP_002266 A/G T147A minus 23597939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 17q21.2 keratin 15 10077 rs1050916 BLVRA 644 7 43604120 NM_000712 NP_000703 A/G Q56R plus 1525956 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 106 "HapMap,freq" 7p14-cen biliverdin reductase A 10078 rs1050916 BLVRA 644 7 43604120 NM_000712 NP_000703 A/G Q56R plus 1525956 1303 SEQUENOM CEPH CEPH (92) 92 1 106 "HapMap,freq" 7p14-cen biliverdin reductase A 10079 rs1050998 CXCL16 58191 17 4585486 NM_022059 NP_071342 C/T I142T minus 3214611 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.41 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 10080 rs1050998 CXCL16 58191 17 4585486 NM_022059 NP_071342 C/T I142T minus 12391137 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 10081 rs1050998 CXCL16 58191 17 4585486 NM_022059 NP_071342 C/T I142T minus 24213400 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 10082 rs1050998 CXCL16 58191 17 4585486 NM_022059 NP_071342 C/T I142T minus 24213400 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 10083 rs1050998 CXCL16 58191 17 4585486 NM_022059 NP_071342 C/T I142T minus 24213400 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 10084 rs1051006 MADD 8567 11 47263161 NM_003682 NP_003673 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10085 rs1051006 MADD 8567 11 47263161 NM_003682 NP_003673 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10086 rs1051006 MADD 8567 11 47263161 NM_003682 NP_003673 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10087 rs1051006 MADD 8567 11 47263161 NM_003682 NP_003673 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10088 rs1051006 MADD 8567 11 47263161 NM_003682 NP_003673 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10089 rs1051006 MADD 8567 11 47263161 NM_130470 NP_569826 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10090 rs1051006 MADD 8567 11 47263161 NM_130470 NP_569826 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10091 rs1051006 MADD 8567 11 47263161 NM_130470 NP_569826 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10092 rs1051006 MADD 8567 11 47263161 NM_130470 NP_569826 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10093 rs1051006 MADD 8567 11 47263161 NM_130470 NP_569826 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10094 rs1051006 MADD 8567 11 47263161 NM_130471 NP_569827 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10095 rs1051006 MADD 8567 11 47263161 NM_130471 NP_569827 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10096 rs1051006 MADD 8567 11 47263161 NM_130471 NP_569827 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10097 rs1051006 MADD 8567 11 47263161 NM_130471 NP_569827 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10098 rs1051006 MADD 8567 11 47263161 NM_130471 NP_569827 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10099 rs1051006 MADD 8567 11 47263161 NM_130472 NP_569828 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10100 rs1051006 MADD 8567 11 47263161 NM_130472 NP_569828 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10101 rs1051006 MADD 8567 11 47263161 NM_130472 NP_569828 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10102 rs1051006 MADD 8567 11 47263161 NM_130472 NP_569828 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10103 rs1051006 MADD 8567 11 47263161 NM_130472 NP_569828 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10104 rs1051006 MADD 8567 11 47263161 NM_130473 NP_569829 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10105 rs1051006 MADD 8567 11 47263161 NM_130473 NP_569829 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10106 rs1051006 MADD 8567 11 47263161 NM_130473 NP_569829 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10107 rs1051006 MADD 8567 11 47263161 NM_130473 NP_569829 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10108 rs1051006 MADD 8567 11 47263161 NM_130473 NP_569829 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10109 rs1051006 MADD 8567 11 47263161 NM_130474 NP_569830 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10110 rs1051006 MADD 8567 11 47263161 NM_130474 NP_569830 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10111 rs1051006 MADD 8567 11 47263161 NM_130474 NP_569830 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10112 rs1051006 MADD 8567 11 47263161 NM_130474 NP_569830 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10113 rs1051006 MADD 8567 11 47263161 NM_130474 NP_569830 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10114 rs1051006 MADD 8567 11 47263161 NM_130475 NP_569831 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10115 rs1051006 MADD 8567 11 47263161 NM_130475 NP_569831 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10116 rs1051006 MADD 8567 11 47263161 NM_130475 NP_569831 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10117 rs1051006 MADD 8567 11 47263161 NM_130475 NP_569831 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10118 rs1051006 MADD 8567 11 47263161 NM_130475 NP_569831 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10119 rs1051006 MADD 8567 11 47263161 NM_130476 NP_569832 A/G V751M plus 4922101 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10120 rs1051006 MADD 8567 11 47263161 NM_130476 NP_569832 A/G V751M plus 4922101 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10121 rs1051006 MADD 8567 11 47263161 NM_130476 NP_569832 A/G V751M plus 24181343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10122 rs1051006 MADD 8567 11 47263161 NM_130476 NP_569832 A/G V751M plus 24181343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10123 rs1051006 MADD 8567 11 47263161 NM_130476 NP_569832 A/G V751M plus 24181343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p11.2 MAP-kinase activating death domain 10124 rs1051042 OAS1 4938 12 111819957 NM_016816 NP_058132 C/G R361T plus 16591428 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 10125 rs1051042 OAS1 4938 12 111819957 NM_016816 NP_058132 C/G R361T plus 24415249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 10126 rs1051042 OAS1 4938 12 111819957 NM_016816 NP_058132 C/G R361T plus 24415249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 10127 rs1051042 OAS1 4938 12 111819957 NM_016816 NP_058132 C/G R361T plus 24415249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 10128 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 4474748 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.43 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10129 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 4474748 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10130 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 4474748 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10131 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 23899502 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10132 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 23899502 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10133 rs1051061 VRK2 7444 2 58228465 NM_006296 NP_006287 A/G I167V plus 23899502 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,submitter,freq,cluster" 2p16-p15 vaccinia related kinase 2 10134 rs1051130 CCND3 896 6 42011760 NM_001760 NP_001751 G/T S259A minus 3177789 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.23 121 "by doubleHit,freq,cluster" 6p21 cyclin D3 10135 rs1051130 CCND3 896 6 42011760 NM_001760 NP_001751 G/T S259A minus 3220732 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.46 121 "by doubleHit,freq,cluster" 6p21 cyclin D3 10136 rs1051130 CCND3 896 6 42011760 NM_001760 NP_001751 G/T S259A minus 4479170 693 EGP_SNPS PDR90 NIHPDR 170 0.36 121 "by doubleHit,freq,cluster" 6p21 cyclin D3 10137 rs1051130 CCND3 896 6 42011760 NM_001760 NP_001751 G/T S259A minus 4479170 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 6p21 cyclin D3 10138 rs1051168 NMB 4828 15 83001524 NM_021077 NP_066563 A/C P73T minus 5207787 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 "by doubleHit,freq" 15q22-qter neuromedin B 10139 rs1051168 NMB 4828 15 83001524 NM_205858 NP_995580 A/C P73T minus 5207787 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 "by doubleHit,freq" 15q22-qter neuromedin B 10140 rs1051193 SEL1L 6400 14 81015744 NM_005065 NP_005056 A/G V714I minus 1526538 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 14q24.3-q31 sel-1 suppressor of lin-12-like (C. elegans) 10141 rs1051266 SLC19A1 6573 21 45782222 NM_194255 NP_919231 A/G H27R minus 3177864 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.13 121 "by doubleHit,freq,cluster" 21q22.3 "solute carrier family 19 (folate transporter), member 1" 10142 rs1051266 SLC19A1 6573 21 45782222 NM_194255 NP_919231 A/G H27R minus 16339022 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.44 121 "by doubleHit,freq,cluster" 21q22.3 "solute carrier family 19 (folate transporter), member 1" 10143 rs1051266 SLC19A1 6573 21 45782222 NM_194255 NP_919231 A/G H27R minus 21819753 1303 SEQUENOM CEPH CEPH (92) 92 0.33 121 "by doubleHit,freq,cluster" 21q22.3 "solute carrier family 19 (folate transporter), member 1" 10144 rs1051309 ANKHD1 54882 5 139886028 NM_017747 NP_060217 A/G G1586S plus 1526754 1303 SEQUENOM CEPH CEPH (92) 92 0.03 106 by freq 5q31.3 ankyrin repeat and KH domain containing 1 10145 rs1051309 MASK-BP3 404734 5 139886028 NM_020690 NP_065741 A/G G1586S plus 1526754 1303 SEQUENOM CEPH CEPH (92) 92 0.03 106 by freq 5q31.3 MASK-4E-BP3 alternate reading frame gene 10146 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 3176256 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.3 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10147 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 3500320 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10148 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 3500320 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10149 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 24085876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10150 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 24085876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10151 rs1051338 LIPA 3988 10 90997340 NM_000235 NP_000226 A/C T16P minus 24085876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "HapMap,submitter,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 10152 rs1051347 CACNA1C 775 12 2484295 NM_000719 NP_000710 A/G W380X plus 1526833 1303 SEQUENOM CEPH CEPH (92) 92 0.04 106 by freq 12p13.3 "calcium channel, voltage-dependent, L type, alpha 1C subunit" 10153 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 1673280 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10154 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 2588301 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.29 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10155 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 2588301 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.41 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10156 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 2588301 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10157 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 2588301 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.09 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10158 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 4920719 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.29 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10159 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 23495927 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10160 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 23495927 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10161 rs1051484 PREP 5550 6 105832729 NM_002726 NP_002717 C/T V706I plus 23495927 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q22 prolyl endopeptidase 10162 rs1051488 HLA-B 3106 6 31430890 NM_005514 NP_005505 A/G A329T minus 20422010 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class I, B" 10163 rs1051488 HLA-B 3106 6 31430890 NM_005514 NP_005505 A/G A329T minus 24796270 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class I, B" 10164 rs1051489 ZFR 51663 5 32436023 NM_016107 NP_057191 C/T I520T minus 3249658 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 121 "HapMap,submitter,freq,cluster" 5p13.3 zinc finger RNA binding protein 10165 rs1051489 ZFR 51663 5 32436023 NM_016107 NP_057191 C/T I520T minus 22301778 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "HapMap,submitter,freq,cluster" 5p13.3 zinc finger RNA binding protein 10166 rs1051505 ARID3A 1820 19 922949 NM_005224 NP_005215 A/G G556S plus 12474446 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "by doubleHit,freq,cluster" 19p13.3 AT rich interactive domain 3A (BRIGHT- like) 10167 rs1051566 GSTA1 2938 6 52771991 NM_145740 NP_665683 A/G A12T minus 1527223 1303 SEQUENOM CEPH CEPH (92) 92 0.28 106 by freq 6p12.1 glutathione S-transferase A1 10168 rs1051577 GPR18 2841 13 98705299 NM_005292 NP_005283 A/C L277I minus 1527242 1303 SEQUENOM CEPH CEPH (92) 92 0.15 86 by freq 13q32 G protein-coupled receptor 18 10169 rs1051578 GSTA1 2938 6 52771969 NM_145740 NP_665683 C/T T19I minus 1527259 1303 SEQUENOM CEPH CEPH (92) 92 0.04 106 by freq 6p12.1 glutathione S-transferase A1 10170 rs1051612 POU1F1 5449 3 87408292 NM_000306 NP_000297 C/T Q4R plus 1527313 1303 SEQUENOM CEPH CEPH (92) 92 0.12 106 by freq 3p11 "POU domain, class 1, transcription factor 1 (Pit1, growth hormone factor 1)" 10171 rs1051623 CDH17 1015 8 95212362 NM_004063 NP_004054 C/G E734D minus 3523876 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10172 rs1051623 CDH17 1015 8 95212362 NM_004063 NP_004054 C/G E734D minus 24044309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10173 rs1051623 CDH17 1015 8 95212362 NM_004063 NP_004054 C/G E734D minus 24044309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10174 rs1051623 CDH17 1015 8 95212362 NM_004063 NP_004054 C/G E734D minus 24044309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10175 rs1051624 CDH17 1015 8 95212348 NM_004063 NP_004054 A/C E739A minus 3525064 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10176 rs1051624 CDH17 1015 8 95212348 NM_004063 NP_004054 A/C E739A minus 3525064 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10177 rs1051624 CDH17 1015 8 95212348 NM_004063 NP_004054 A/C E739A minus 24497817 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10178 rs1051624 CDH17 1015 8 95212348 NM_004063 NP_004054 A/C E739A minus 24497817 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10179 rs1051624 CDH17 1015 8 95212348 NM_004063 NP_004054 A/C E739A minus 24497817 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 10180 rs1051695 AKAP6 9472 14 32362873 NM_004274 NP_004265 A/G N2035D plus 19298340 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 10181 rs1051695 AKAP6 9472 14 32362873 NM_004274 NP_004265 A/G N2035D plus 24554517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 10182 rs1051695 AKAP6 9472 14 32362873 NM_004274 NP_004265 A/G N2035D plus 24554517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 10183 rs1051695 AKAP6 9472 14 32362873 NM_004274 NP_004265 A/G N2035D plus 24554517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 10184 rs1051738 PDE4A 5141 19 10438843 NM_006202 NP_006193 A/C A497E plus 1527521 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,submitter,freq,cluster" 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 10185 rs1051738 PDE4A 5141 19 10438843 NM_006202 NP_006193 A/C A497E plus 14728683 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,submitter,freq,cluster" 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 10186 rs1051738 PDE4A 5141 19 10438843 NM_006202 NP_006193 A/C A497E plus 23646751 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "HapMap,submitter,freq,cluster" 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 10187 rs1051738 PDE4A 5141 19 10438843 NM_006202 NP_006193 A/C A497E plus 23646751 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "HapMap,submitter,freq,cluster" 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 10188 rs1051738 PDE4A 5141 19 10438843 NM_006202 NP_006193 A/C A497E plus 23646751 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.15 123 "HapMap,submitter,freq,cluster" 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 10189 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 1527524 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.24 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10190 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 1527524 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.29 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10191 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 1527524 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.38 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10192 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 4041372 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10193 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 5586496 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.36 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10194 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 5586496 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.39 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10195 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 5586496 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10196 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 5586496 777 SNP500CANCER HISP1 Hispanic (23) 46 0.41 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10197 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 5586496 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.43 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10198 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 23857114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10199 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 23857114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10200 rs1051740 EPHX1 2052 1 222326368 NM_000120 NP_000111 C/T Y113H plus 23857114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 10201 rs1051858 ARID4A 5926 14 57900895 NM_002892 NP_002883 A/G T779A plus 12279843 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10202 rs1051858 ARID4A 5926 14 57900895 NM_002892 NP_002883 A/G T779A plus 12279843 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10203 rs1051858 ARID4A 5926 14 57900895 NM_002892 NP_002883 A/G T779A plus 24721594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10204 rs1051858 ARID4A 5926 14 57900895 NM_002892 NP_002883 A/G T779A plus 24721594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10205 rs1051858 ARID4A 5926 14 57900895 NM_002892 NP_002883 A/G T779A plus 24721594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10206 rs1051858 ARID4A 5926 14 57900895 NM_023000 NP_075376 A/G T779A plus 12279843 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10207 rs1051858 ARID4A 5926 14 57900895 NM_023000 NP_075376 A/G T779A plus 12279843 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10208 rs1051858 ARID4A 5926 14 57900895 NM_023000 NP_075376 A/G T779A plus 24721594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10209 rs1051858 ARID4A 5926 14 57900895 NM_023000 NP_075376 A/G T779A plus 24721594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10210 rs1051858 ARID4A 5926 14 57900895 NM_023000 NP_075376 A/G T779A plus 24721594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10211 rs1051858 ARID4A 5926 14 57900895 NM_023001 NP_075377 A/G T779A plus 12279843 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10212 rs1051858 ARID4A 5926 14 57900895 NM_023001 NP_075377 A/G T779A plus 12279843 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10213 rs1051858 ARID4A 5926 14 57900895 NM_023001 NP_075377 A/G T779A plus 24721594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10214 rs1051858 ARID4A 5926 14 57900895 NM_023001 NP_075377 A/G T779A plus 24721594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10215 rs1051858 ARID4A 5926 14 57900895 NM_023001 NP_075377 A/G T779A plus 24721594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 10216 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 4478804 693 EGP_SNPS PDR90 NIHPDR 174 0.07 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10217 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 4478804 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10218 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 4478804 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10219 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 23305762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10220 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 23305762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10221 rs1051881 EXOSC9 5393 4 123095570 NM_005033 NP_005024 C/G S341T plus 23305762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 10222 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 2226119 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10223 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 2226119 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10224 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 3249278 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.09 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10225 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 23675802 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10226 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 23675802 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10227 rs1051931 PLA2G7 7941 6 46780902 NM_005084 NP_005075 A/G V379A plus 23675802 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by doubleHit,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 10228 rs1051992 PRKCDBP 112464 11 6297282 NM_145040 NP_659477 C/T L158P minus 16104065 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 11p15.4 "protein kinase C, delta binding protein" 10229 rs1051992 PRKCDBP 112464 11 6297282 NM_145040 NP_659477 C/T L158P minus 24514153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11p15.4 "protein kinase C, delta binding protein" 10230 rs1051992 PRKCDBP 112464 11 6297282 NM_145040 NP_659477 C/T L158P minus 24514153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "protein kinase C, delta binding protein" 10231 rs1051992 PRKCDBP 112464 11 6297282 NM_145040 NP_659477 C/T L158P minus 24514153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 11p15.4 "protein kinase C, delta binding protein" 10232 rs1052030 MYO7A 4647 11 76531431 NM_000260 NP_000251 C/T L16S plus 4926764 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.49 116 "HapMap,doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 10233 rs1052030 MYO7A 4647 11 76531431 NM_000260 NP_000251 C/T L16S plus 10652328 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 116 "HapMap,doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 10234 rs1052053 PMF1 11243 1 153015246 NM_007221 NP_009152 A/G Q35R plus 3239834 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.36 123 "by doubleHit,freq,cluster" 1q12 polyamine-modulated factor 1 10235 rs1052053 PMF1 11243 1 153015246 NM_007221 NP_009152 A/G Q35R plus 3895211 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 1q12 polyamine-modulated factor 1 10236 rs1052053 PMF1 11243 1 153015246 NM_007221 NP_009152 A/G Q35R plus 23697663 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1q12 polyamine-modulated factor 1 10237 rs1052053 PMF1 11243 1 153015246 NM_007221 NP_009152 A/G Q35R plus 23697663 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 1q12 polyamine-modulated factor 1 10238 rs1052053 PMF1 11243 1 153015246 NM_007221 NP_009152 A/G Q35R plus 23697663 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q12 polyamine-modulated factor 1 10239 rs1052065 MRPL35 51318 2 86349421 NM_016622 NP_057706 A/G Y180C plus 1528107 1303 SEQUENOM CEPH CEPH (92) 92 0.45 86 by freq 2p11.2 mitochondrial ribosomal protein L35 10240 rs1052067 PMF1 11243 1 153019194 NM_007221 NP_009152 A/G M97I plus 3239836 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.27 123 "by doubleHit,submitter,freq,cluster" 1q12 polyamine-modulated factor 1 10241 rs1052067 PMF1 11243 1 153019194 NM_007221 NP_009152 A/G M97I plus 3863214 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,submitter,freq,cluster" 1q12 polyamine-modulated factor 1 10242 rs1052067 PMF1 11243 1 153019194 NM_007221 NP_009152 A/G M97I plus 24638412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 1q12 polyamine-modulated factor 1 10243 rs1052067 PMF1 11243 1 153019194 NM_007221 NP_009152 A/G M97I plus 24638412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 1q12 polyamine-modulated factor 1 10244 rs1052067 PMF1 11243 1 153019194 NM_007221 NP_009152 A/G M97I plus 24638412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 1q12 polyamine-modulated factor 1 10245 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 2667789 506 NCBI NIHPDR NIHPDR 756 0.29 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10246 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 4480379 693 EGP_SNPS PDR90 NIHPDR 154 0.32 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10247 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 4480379 1303 SEQUENOM CEPH CEPH (92) 92 0.18 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10248 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 5586810 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.22 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10249 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 5586810 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.22 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10250 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 5586810 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10251 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 5586810 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10252 rs1052133 OGG1 4968 3 9773773 NM_002542 NP_002533 C/G S326C plus 5586810 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.38 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10253 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 2667789 506 NCBI NIHPDR NIHPDR 756 0.29 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10254 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 4480379 693 EGP_SNPS PDR90 NIHPDR 154 0.32 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10255 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 4480379 1303 SEQUENOM CEPH CEPH (92) 92 0.18 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10256 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 5586810 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.22 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10257 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 5586810 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.22 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10258 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 5586810 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10259 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 5586810 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10260 rs1052133 OGG1 4968 3 9773773 NM_016820 NP_058213 C/G P332A plus 5586810 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.38 121 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 10261 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 2088692 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10262 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 2088692 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 0.21 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10263 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 2088692 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.08 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10264 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 3207032 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10265 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 5749139 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10266 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 5749139 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10267 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 16338492 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 76 0.46 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10268 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 24629381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10269 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 24629381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10270 rs1052161 ALMS1 7840 2 73740193 NM_015120 NP_055935 C/T R4029K minus 24629381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 10271 rs1052200 CPVL 54504 7 28843560 NM_019029 NP_061902 A/G R398H minus 2986161 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10272 rs1052200 CPVL 54504 7 28843560 NM_019029 NP_061902 A/G R398H minus 2986161 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10273 rs1052200 CPVL 54504 7 28843560 NM_019029 NP_061902 A/G R398H minus 24037188 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10274 rs1052200 CPVL 54504 7 28843560 NM_019029 NP_061902 A/G R398H minus 24037188 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10275 rs1052200 CPVL 54504 7 28843560 NM_019029 NP_061902 A/G R398H minus 24037188 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10276 rs1052200 CPVL 54504 7 28843560 NM_031311 NP_112601 A/G R398H minus 2986161 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10277 rs1052200 CPVL 54504 7 28843560 NM_031311 NP_112601 A/G R398H minus 2986161 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10278 rs1052200 CPVL 54504 7 28843560 NM_031311 NP_112601 A/G R398H minus 24037188 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10279 rs1052200 CPVL 54504 7 28843560 NM_031311 NP_112601 A/G R398H minus 24037188 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10280 rs1052200 CPVL 54504 7 28843560 NM_031311 NP_112601 A/G R398H minus 24037188 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 7p15-p14 "carboxypeptidase, vitellogenic-like" 10281 rs1052420 ANKRD16 54522 10 5960127 XM_166138 XP_166138 A/G Q353R minus 4148224 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 "by doubleHit,freq,cluster" 10p15.1 ankyrin repeat domain 16 10282 rs1052420 ANKRD16 54522 10 5960127 XM_166138 XP_166138 A/G Q353R minus 4936681 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.15 121 "by doubleHit,freq,cluster" 10p15.1 ankyrin repeat domain 16 10283 rs1052486 BAT3 7917 6 31718665 NM_004639 NP_004630 C/T S625P minus 24796278 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10284 rs1052486 BAT3 7917 6 31718665 NM_004639 NP_004630 C/T S625P minus 24817387 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10285 rs1052486 BAT3 7917 6 31718665 NM_080702 NP_542433 C/T S619P minus 24796278 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10286 rs1052486 BAT3 7917 6 31718665 NM_080702 NP_542433 C/T S619P minus 24817387 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10287 rs1052486 BAT3 7917 6 31718665 NM_080703 NP_542434 C/T S619P minus 24796278 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10288 rs1052486 BAT3 7917 6 31718665 NM_080703 NP_542434 C/T S619P minus 24817387 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 3 10289 rs1052571 CASP9 842 1 15595919 NM_001229 NP_001220 C/T A28V minus 6310786 693 EGP_SNPS PDR90 NIHPDR 122 0.49 120 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10290 rs1052571 CASP9 842 1 15595919 NM_001229 NP_001220 C/T A28V minus 6310786 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10291 rs1052571 CASP9 842 1 15595919 NM_032996 NP_127463 C/T A28V minus 6310786 693 EGP_SNPS PDR90 NIHPDR 122 0.49 120 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10292 rs1052571 CASP9 842 1 15595919 NM_032996 NP_127463 C/T A28V minus 6310786 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10293 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 2924012 506 NCBI NIHPDR NIHPDR 826 0.45 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10294 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6310866 693 EGP_SNPS PDR90 NIHPDR 170 0.48 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10295 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6903699 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.47 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10296 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6903699 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.43 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10297 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6903699 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10298 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6903699 777 SNP500CANCER HISP1 Hispanic (23) 46 0.5 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10299 rs1052576 CASP9 842 1 15577849 NM_001229 NP_001220 A/G Q221R minus 6903699 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.48 121 "by doubleHit,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 10300 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 2698810 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10301 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 2698810 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10302 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 2698810 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10303 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 2698810 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10304 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 23288694 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10305 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 23288694 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10306 rs1052618 TMEM22 80723 3 138057199 NM_025246 NP_079522 A/G K400R plus 23288694 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 3q22.3 transmembrane protein 22 10307 rs1052637 DDX18 8886 2 118291445 NM_006773 NP_006764 C/G T94S minus 2154612 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 2q14.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 10308 rs1052637 DDX18 8886 2 118291445 NM_006773 NP_006764 C/G T94S minus 3213296 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.11 123 "HapMap,doubleHit,freq,cluster" 2q14.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 10309 rs1052637 DDX18 8886 2 118291445 NM_006773 NP_006764 C/G T94S minus 23326927 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 2q14.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 10310 rs1052637 DDX18 8886 2 118291445 NM_006773 NP_006764 C/G T94S minus 23326927 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2q14.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 10311 rs1052637 DDX18 8886 2 118291445 NM_006773 NP_006764 C/G T94S minus 23326927 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 2q14.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 10312 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 3195626 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.24 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10313 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 3195626 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10314 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 3195626 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10315 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 24701578 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10316 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 24701578 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.12 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10317 rs1052763 STK22B 23617 22 17494305 NM_053006 NP_443732 C/T T280M plus 24701578 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "HapMap,freq,cluster" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 10318 rs1052867 INVS 27130 9 100134758 NM_014425 NP_055240 A/T S888R plus 1529612 1303 SEQUENOM CEPH CEPH (92) 92 0.03 106 by freq 9q31 inversin 10319 rs1052976 RRBP1 6238 20 17548357 NM_004587 NP_004578 C/T S766L minus 1529828 1303 SEQUENOM CEPH CEPH (92) 92 0.3 106 by freq 20p12 ribosome binding protein 1 homolog 180kDa (dog) 10320 rs1053228 CIDE-3 63924 3 9883875 NM_022094 NP_071377 G/T Q220H minus 24817567 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 3p25.3 cell death activator CIDE-3 10321 rs1053230 KMO 8564 1 238081389 NM_003679 NP_003670 A/G R452C minus 11391586 1303 SEQUENOM CEPH CEPH (92) 92 0.3 116 "by submitter,freq,cluster" 1q42-q44 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 10322 rs1053262 TUBB5 10382 19 6447045 NM_006087 NP_006078 C/G I155M minus 1530311 1303 SEQUENOM CEPH CEPH (92) 92 0.1 86 by freq 19p13.3 "tubulin, beta, 5" 10323 rs1053266 CCDC6 8030 10 61222698 NM_005436 NP_005427 A/C P470T minus 4936829 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.43 123 "by doubleHit,freq,cluster" 10q21 coiled-coil domain containing 6 10324 rs1053266 CCDC6 8030 10 61222698 NM_005436 NP_005427 A/C P470T minus 17388694 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 10q21 coiled-coil domain containing 6 10325 rs1053266 CCDC6 8030 10 61222698 NM_005436 NP_005427 A/C P470T minus 24053150 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 10q21 coiled-coil domain containing 6 10326 rs1053266 CCDC6 8030 10 61222698 NM_005436 NP_005427 A/C P470T minus 24053150 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 10q21 coiled-coil domain containing 6 10327 rs1053266 CCDC6 8030 10 61222698 NM_005436 NP_005427 A/C P470T minus 24053150 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q21 coiled-coil domain containing 6 10328 rs1053312 COL6A1 1291 21 46247817 NM_001848 NP_001839 A/G R850H plus 1530395 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq" 21q22.3 "collagen, type VI, alpha 1" 10329 rs1053312 COL6A1 1291 21 46247817 NM_001848 NP_001839 A/G R850H plus 24817592 1303 SEQUENOM CEPH CEPH (92) 184 0.3 123 "by doubleHit,freq" 21q22.3 "collagen, type VI, alpha 1" 10330 rs1053338 SCA7 6314 3 63942940 NM_000333 NP_000324 A/G K264R plus 4951073 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.13 108 "by cluster,freq" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 10331 rs1053593 HMG2L1 10042 22 33985429 NM_005487 NP_005478 G/T G56V plus 3189174 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.46 121 "HapMap,doubleHit,freq,cluster" 22q13.1 high-mobility group protein 2-like 1 10332 rs1053593 HMG2L1 10042 22 33985429 NM_005487 NP_005478 G/T G56V plus 8006120 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 121 "HapMap,doubleHit,freq,cluster" 22q13.1 high-mobility group protein 2-like 1 10333 rs1053593 HMG2L1 10042 22 33985429 NM_005487 NP_005478 G/T G56V plus 8006120 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "HapMap,doubleHit,freq,cluster" 22q13.1 high-mobility group protein 2-like 1 10334 rs1053655 ERF 2077 19 47445490 NM_006494 NP_006485 A/G R205H minus 1531069 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 19q13 Ets2 repressor factor 10335 rs1053668 CAMK2D 817 4 114736141 NM_001221 NP_001212 C/G Q463E minus 1531091 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 4q26 calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 10336 rs1053668 CAMK2D 817 4 114736141 NM_172115 NP_742113 C/G Q463E minus 1531091 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 4q26 calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 10337 rs1053668 CAMK2D 817 4 114736141 NM_172127 NP_742125 C/G Q463E minus 1531091 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 4q26 calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 10338 rs1053668 CAMK2D 817 4 114736141 NM_172128 NP_742126 C/G Q463E minus 1531091 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 4q26 calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 10339 rs1053783 DEFB129 140881 20 158306 NM_080831 NP_543021 C/G T149S plus 8400380 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "defensin, beta 129" 10340 rs1053783 DEFB129 140881 20 158306 NM_080831 NP_543021 C/G T149S plus 8400380 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "defensin, beta 129" 10341 rs1053783 DEFB129 140881 20 158306 NM_080831 NP_543021 C/G T149S plus 23634672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "defensin, beta 129" 10342 rs1053783 DEFB129 140881 20 158306 NM_080831 NP_543021 C/G T149S plus 23634672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "defensin, beta 129" 10343 rs1053783 DEFB129 140881 20 158306 NM_080831 NP_543021 C/G T149S plus 23634672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "defensin, beta 129" 10344 rs1053808 TTC3 7267 21 37447226 NM_003316 NP_003307 C/T M840T plus 4015346 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.47 121 "by doubleHit,freq,cluster" 21q22.2 tetratricopeptide repeat domain 3 10345 rs1053808 TTC3 7267 21 37447226 NM_003316 NP_003307 C/T M840T plus 10975538 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,freq,cluster" 21q22.2 tetratricopeptide repeat domain 3 10346 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 2983945 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.44 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10347 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 8819957 506 NCBI NIHPDR NIHPDR 146 0.42 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10348 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 8819957 720 UWGC LupusClinical 166 0.41 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10349 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 14265220 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10350 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 24217047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10351 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 24217047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10352 rs1053874 DNASE1 1773 16 3647748 NM_005223 NP_005214 A/G R244Q plus 24217047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 16p13.3 deoxyribonuclease I 10353 rs1053926 PTPLA 9200 10 17676315 NM_014241 NP_055056 C/T H227Y minus 3207171 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 123 "by doubleHit,submitter,freq,cluster" 10p14-p13 "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" 10354 rs1053926 PTPLA 9200 10 17676315 NM_014241 NP_055056 C/T H227Y minus 16506678 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,submitter,freq,cluster" 10p14-p13 "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" 10355 rs1053926 PTPLA 9200 10 17676315 NM_014241 NP_055056 C/T H227Y minus 23574658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 10p14-p13 "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" 10356 rs1053926 PTPLA 9200 10 17676315 NM_014241 NP_055056 C/T H227Y minus 23574658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 10p14-p13 "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" 10357 rs1053926 PTPLA 9200 10 17676315 NM_014241 NP_055056 C/T H227Y minus 23574658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 10p14-p13 "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" 10358 rs1053966 TTC3 7267 21 37489879 NM_003316 NP_003307 C/G D1751H plus 4015382 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.33 121 "by doubleHit,freq,cluster" 21q22.2 tetratricopeptide repeat domain 3 10359 rs1053966 TTC3 7267 21 37489879 NM_003316 NP_003307 C/G D1751H plus 10983786 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,freq,cluster" 21q22.2 tetratricopeptide repeat domain 3 10360 rs1054421 TRA2A 29896 7 23334669 NM_013293 NP_037425 G/T G23X minus 1532363 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 106 HapMap 7p15.3 transformer-2 alpha 10361 rs1054421 TRA2A 29896 7 23334669 NM_013293 NP_037425 G/T G23X minus 1532363 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 7p15.3 transformer-2 alpha 10362 rs1054423 IPO8 10526 12 30739833 NM_006390 NP_006381 A/T I6F minus 1532365 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 12p11.22 importin 8 10363 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 3250293 738 YUSUKE JBIC-ALLELE Japanese (752) 722 0.37 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10364 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 3250293 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10365 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 3250293 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10366 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 24377049 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10367 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 24377049 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10368 rs1054480 ADAMTS2 9509 5 178473581 NM_014244 NP_055059 C/T P1177S minus 24377049 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,submitter,freq,cluster" 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 10369 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 2403666 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10370 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 2403666 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.46 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10371 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 2403666 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10372 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 2403666 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.44 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10373 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 2403666 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10374 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 23559053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10375 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 23559053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10376 rs1054485 ZNF415 55786 19 58304569 NM_018355 NP_060825 A/C I181L minus 23559053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 19q13.42 zinc finger protein 415 10377 rs1054533 CPAMD8 27151 19 16865049 NM_015692 NP_056507 A/G Q1843R minus 3171901 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.11 120 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 10378 rs1054533 CPAMD8 27151 19 16865049 NM_015692 NP_056507 A/G Q1843R minus 3171901 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.33 120 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 10379 rs1054533 CPAMD8 27151 19 16865049 NM_015692 NP_056507 A/G Q1843R minus 3171901 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.4 120 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 10380 rs1054533 CPAMD8 27151 19 16865049 NM_015692 NP_056507 A/G Q1843R minus 3171901 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "HapMap,doubleHit,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 10381 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 1532622 901 AFFY AfAm 4 0.5 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10382 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 1532622 902 AFFY Caucasian 20 0.45 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10383 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 1532622 903 AFFY Asian 6 0.5 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10384 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 1532622 904 AFFY CEPH 10 0.2 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10385 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 1532622 905 AFFY PDpanel 42 0.36 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10386 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 17649564 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10387 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 24162633 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10388 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 24162633 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10389 rs1054565 TAF1B 9014 2 10001558 NM_005680 NP_005671 A/G T351A plus 24162633 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 10390 rs1054627 IBSP 3381 4 89089871 NM_004967 NP_004958 A/G G195E plus 22189279 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10391 rs1054627 IBSP 3381 4 89089871 NM_004967 NP_004958 A/G G195E plus 24294784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10392 rs1054627 IBSP 3381 4 89089871 NM_004967 NP_004958 A/G G195E plus 24294784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10393 rs1054627 IBSP 3381 4 89089871 NM_004967 NP_004958 A/G G195E plus 24294784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10394 rs1054628 IBSP 3381 4 89090090 NM_004967 NP_004958 C/T A268V plus 11648131 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by cluster,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10395 rs1054628 IBSP 3381 4 89090090 NM_004967 NP_004958 C/T A268V plus 23231610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10396 rs1054628 IBSP 3381 4 89090090 NM_004967 NP_004958 C/T A268V plus 23231610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by cluster,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10397 rs1054628 IBSP 3381 4 89090090 NM_004967 NP_004958 C/T A268V plus 23231610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by cluster,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10398 rs1054629 IBSP 3381 4 89090097 NM_004967 NP_004958 A/T E270D plus 22189524 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.29 123 "HapMap,submitter,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10399 rs1054629 IBSP 3381 4 89090097 NM_004967 NP_004958 A/T E270D plus 22189524 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,submitter,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10400 rs1054629 IBSP 3381 4 89090097 NM_004967 NP_004958 A/T E270D plus 24294822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,submitter,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10401 rs1054629 IBSP 3381 4 89090097 NM_004967 NP_004958 A/T E270D plus 24294822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10402 rs1054629 IBSP 3381 4 89090097 NM_004967 NP_004958 A/T E270D plus 24294822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "HapMap,submitter,freq" 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 10403 rs1054644 CACNA1H 8912 16 1210112 NM_021098 NP_066921 A/G R2060H plus 2376204 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 by freq 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10404 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 4937917 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10405 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 5164547 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10406 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 5164547 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10407 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 24400103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10408 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 24400103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10409 rs1054645 CACNA1H 8912 16 1210163 NM_021098 NP_066921 A/G R2077H plus 24400103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 10410 rs1054940 EPS8L1 54869 19 60290536 NM_017729 NP_060199 A/G K542R plus 3663159 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 19q13.42 EPS8-like 1 10411 rs1054940 EPS8L1 54869 19 60290536 NM_133180 NP_573441 A/G K669R plus 3663159 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,freq,cluster" 19q13.42 EPS8-like 1 10412 rs1055138 CYP4V2 285440 4 187488190 NM_207352 NP_997235 C/G L22V minus 2194574 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "by doubleHit,freq,cluster" 4q35.1 "cytochrome P450, family 4, subfamily v, polypeptide 2" 10413 rs1055153 TAZ 25937 3 150857571 NM_015472 NP_056287 G/T P74Q plus 1533650 1303 SEQUENOM CEPH CEPH (92) 92 0.01 120 "by cluster,freq" 3q23-q24 transcriptional co-activator with PDZ-binding motif (TAZ) 10414 rs1055153 TAZ 25937 3 150857571 NM_015472 NP_056287 G/T P74Q plus 16338522 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 14 0.14 120 "by cluster,freq" 3q23-q24 transcriptional co-activator with PDZ-binding motif (TAZ) 10415 rs1055246 BCAS1 8537 20 51994876 NM_003657 NP_003648 C/T S583P minus 1533817 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 10416 rs1055246 BCAS1 8537 20 51994876 NM_003657 NP_003648 C/T S583P minus 24094423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 10417 rs1055246 BCAS1 8537 20 51994876 NM_003657 NP_003648 C/T S583P minus 24094423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 10418 rs1055246 BCAS1 8537 20 51994876 NM_003657 NP_003648 C/T S583P minus 24094423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 20q13.2-q13.3 breast carcinoma amplified sequence 1 10419 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 1534791 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10420 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 1534791 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10421 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 1534791 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10422 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 1534791 1303 SEQUENOM CEPH CEPH (92) 92 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10423 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 2422868 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10424 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 2422868 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10425 rs1055806 BNIP3L 665 8 26304780 NM_004331 NP_004322 G/T G69X plus 2422868 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 106 by freq 8p21 BCL2/adenovirus E1B 19kDa interacting protein 3-like 10426 rs1055851 ERO1LB 56605 1 232707866 NM_019891 NP_063944 C/G H465Q plus 2812728 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.22 123 "by doubleHit,freq,cluster" 1q42.2-q43 ERO1-like beta (S. cerevisiae) 10427 rs1055851 ERO1LB 56605 1 232707866 NM_019891 NP_063944 C/G H465Q plus 2812728 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 1q42.2-q43 ERO1-like beta (S. cerevisiae) 10428 rs1055935 SPRR3 6707 1 149789014 NM_005416 NP_005407 C/G L149V minus 2379813 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by submitter,freq,cluster" 1q21-q22 small proline-rich protein 3 10429 rs1055935 SPRR3 6707 1 149789014 NM_005416 NP_005407 C/G L149V minus 24280312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by submitter,freq,cluster" 1q21-q22 small proline-rich protein 3 10430 rs1055935 SPRR3 6707 1 149789014 NM_005416 NP_005407 C/G L149V minus 24280312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by submitter,freq,cluster" 1q21-q22 small proline-rich protein 3 10431 rs1055935 SPRR3 6707 1 149789014 NM_005416 NP_005407 C/G L149V minus 24280312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq,cluster" 1q21-q22 small proline-rich protein 3 10432 rs1056042 SPATA6 54558 1 48476439 NM_019073 NP_061946 A/G C478Y minus 1535490 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 120 "HapMap,submitter,freq,cluster" 1p33 spermatogenesis associated 6 10433 rs1056042 SPATA6 54558 1 48476439 NM_019073 NP_061946 A/G C478Y minus 19116490 1303 SEQUENOM CEPH CEPH (92) 92 0.4 120 "HapMap,submitter,freq,cluster" 1p33 spermatogenesis associated 6 10434 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 5007571 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.33 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10435 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 5007571 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10436 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 19418274 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10437 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 23892436 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10438 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 23892436 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10439 rs1056104 GEMIN6 79833 2 38920600 NM_024775 NP_079051 A/G G140D plus 23892436 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 2p22.3 gem (nuclear organelle) associated protein 6 10440 rs1056148 GLI4 2738 8 144429756 NM_138465 NP_612474 A/G A180T plus 1535681 1303 SEQUENOM CEPH CEPH (92) 92 0.37 120 "by doubleHit,freq" 8q24.3 GLI-Kruppel family member GLI4 10441 rs1056149 SH3RF2 153769 5 145422396 NM_152550 NP_689763 C/G G710A plus 4174147 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 10442 rs1056149 SH3RF2 153769 5 145422396 NM_152550 NP_689763 C/G G710A plus 24609614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 10443 rs1056149 SH3RF2 153769 5 145422396 NM_152550 NP_689763 C/G G710A plus 24609614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 10444 rs1056149 SH3RF2 153769 5 145422396 NM_152550 NP_689763 C/G G710A plus 24609614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 5q32 SH3 domain containing ring finger 2 10445 rs1056185 ZNF83 55769 19 57809343 NM_018300 NP_060770 A/G S96N minus 4972848 1303 SEQUENOM CEPH CEPH (92) 92 0.38 108 "by submitter,freq,cluster" 19q13.3 zinc finger protein 83 (HPF1) 10446 rs1056445 MTIF2 4528 2 55402470 NM_002453 NP_002444 A/C T59N minus 3638821 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 120 "HapMap,doubleHit,freq,cluster" 2p14-p16 mitochondrial translational initiation factor 2 10447 rs1056445 MTIF2 4528 2 55402470 NM_002453 NP_002444 A/C T59N minus 14514046 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "HapMap,doubleHit,freq,cluster" 2p14-p16 mitochondrial translational initiation factor 2 10448 rs1056464 KCNA5 3741 12 5024256 NM_002234 NP_002225 C/T P228S plus 1536243 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 5" 10449 rs1056513 INADL 10207 1 62092319 NM_005799 NP_005790 A/G G1178S plus 24796084 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq" 1p32.1 InaD-like protein 10450 rs1056513 INADL 10207 1 62092319 NM_176877 NP_795352 A/G G1178S plus 24796084 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq" 1p32.1 InaD-like protein 10451 rs1056513 INADL 10207 1 62092319 NM_176878 NP_795353 A/G G1178S plus 24796084 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq" 1p32.1 InaD-like protein 10452 rs1056522 CHST13 166012 3 127744043 NM_152889 NP_690849 C/T R317Q minus 21995839 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by doubleHit,freq,cluster" 3q21.3 carbohydrate (chondroitin 4) sulfotransferase 13 10453 rs1056685 ESPL1 9700 12 51972970 NM_012291 NP_036423 A/G R2037H plus 2746206 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 10454 rs1056685 ESPL1 9700 12 51972970 NM_012291 NP_036423 A/G R2037H plus 23365518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 10455 rs1056685 ESPL1 9700 12 51972970 NM_012291 NP_036423 A/G R2037H plus 23365518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 10456 rs1056685 ESPL1 9700 12 51972970 NM_012291 NP_036423 A/G R2037H plus 23365518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 10457 rs1056695 BCAN 63827 1 153435325 NM_021948 NP_068767 A/G E504K plus 4934596 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.35 123 "by doubleHit,freq,cluster" 1q31 brevican 10458 rs1056695 BCAN 63827 1 153435325 NM_198427 NP_940819 A/G E504K plus 4934596 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.35 123 "by doubleHit,freq,cluster" 1q31 brevican 10459 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 901 AFFY AfAm 12 0.08 106 by freq 4q12-q13.3 centromere protein C 1 10460 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 902 AFFY Caucasian 24 0.08 106 by freq 4q12-q13.3 centromere protein C 1 10461 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 903 AFFY Asian 12 1 106 by freq 4q12-q13.3 centromere protein C 1 10462 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 904 AFFY CEPH 12 1 106 by freq 4q12-q13.3 centromere protein C 1 10463 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 905 AFFY PDpanel 48 0.04 106 by freq 4q12-q13.3 centromere protein C 1 10464 rs1056787 CENPC1 1060 4 68208836 NM_001812 NP_001803 A/G G389D minus 1536890 1303 SEQUENOM CEPH CEPH (92) 92 0.14 106 by freq 4q12-q13.3 centromere protein C 1 10465 rs1056797 DGCR6L 85359 22 18676798 NM_033257 NP_150282 C/T S206L minus 2196109 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 by freq 22q11 DiGeorge syndrome critical region gene 6-like 10466 rs1056804 DGCR6L 85359 22 18676830 NM_033257 NP_150282 A/C N195K plus 24818851 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 22q11 DiGeorge syndrome critical region gene 6-like 10467 rs1056814 DGCR6L 85359 22 18677502 NM_033257 NP_150282 C/T I142V plus 24797152 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 22q11 DiGeorge syndrome critical region gene 6-like 10468 rs1056820 ELF1 1997 13 40413286 NM_172373 NP_758961 A/T T343S minus 11071279 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 10469 rs1056820 ELF1 1997 13 40413286 NM_172373 NP_758961 A/T T343S minus 11071279 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 10470 rs1056820 ELF1 1997 13 40413286 NM_172373 NP_758961 A/T T343S minus 24655863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 10471 rs1056820 ELF1 1997 13 40413286 NM_172373 NP_758961 A/T T343S minus 24655863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 10472 rs1056820 ELF1 1997 13 40413286 NM_172373 NP_758961 A/T T343S minus 24655863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 13q13 E74-like factor 1 (ets domain transcription factor) 10473 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.35 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10474 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10475 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10476 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 777 SNP500CANCER HISP1 Hispanic (23) 46 0.37 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10477 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10478 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12675382 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10479 rs1056827 CYP1B1 1545 2 38213828 NM_000104 NP_000095 G/T A119S minus 12724382 693 EGP_SNPS PDR90 NIHPDR 122 0.36 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10480 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 4917839 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.16 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10481 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 5586405 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.41 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10482 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 5586405 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.45 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10483 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 5586405 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10484 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 5586405 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10485 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 5586405 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.08 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10486 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 12724397 693 EGP_SNPS PDR90 NIHPDR 168 0.4 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10487 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 12724397 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10488 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 24639455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10489 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 24639455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10490 rs1056836 CYP1B1 1545 2 38209854 NM_000104 NP_000095 C/G V432L minus 24639455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 10491 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 3375972 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.44 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10492 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 3375972 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.28 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10493 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 3375972 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.41 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10494 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 3375972 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10495 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 6903700 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.32 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10496 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 6903700 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.25 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10497 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 6903700 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10498 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 6903700 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10499 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 6903700 778 SNP500CANCER PAC1 Pacific Rim (24) 44 0.27 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10500 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 23802318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.33 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10501 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 23802318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10502 rs1056892 CBR3 874 21 36440576 NM_001236 NP_001227 A/G V244M plus 23802318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 10503 rs1057027 IFI16 3428 1 155815450 NM_005531 NP_005522 A/C R409S plus 24818921 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by doubleHit,freq" 1q22 "interferon, gamma-inducible protein 16" 10504 rs1057028 IFI16 3428 1 155815462 NM_005531 NP_005522 A/T Y413N plus 20450122 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by doubleHit,freq" 1q22 "interferon, gamma-inducible protein 16" 10505 rs1057037 PFKL 5211 21 44558295 NM_002626 NP_002617 A/T D284V plus 1537373 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 by freq 21q22.3 "phosphofructokinase, liver" 10506 rs1057037 PFKL 5211 21 44558295 NM_002626 NP_002617 A/T D284V plus 24796628 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 21q22.3 "phosphofructokinase, liver" 10507 rs1057044 NFE2L2 4780 2 177921288 NM_006164 NP_006155 A/G R517K minus 1537384 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 10508 rs1057044 NFE2L2 4780 2 177921288 NM_006164 NP_006155 A/G R517K minus 1537384 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 10509 rs1057044 NFE2L2 4780 2 177921288 NM_006164 NP_006155 A/G R517K minus 1537384 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 10510 rs1057044 NFE2L2 4780 2 177921288 NM_006164 NP_006155 A/G R517K minus 1537384 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 10511 rs1057066 LRRC17 10234 7 102168871 NM_005824 NP_005815 C/G G187A plus 4921211 738 YUSUKE JBIC-ALLELE Japanese (752) 718 0.3 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 10512 rs1057066 LRRC17 10234 7 102168871 NM_005824 NP_005815 C/G G187A plus 4921211 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 10513 rs1057066 LRRC17 10234 7 102168871 NM_005824 NP_005815 C/G G187A plus 24014423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 10514 rs1057066 LRRC17 10234 7 102168871 NM_005824 NP_005815 C/G G187A plus 24014423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 10515 rs1057066 LRRC17 10234 7 102168871 NM_005824 NP_005815 C/G G187A plus 24014423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 10516 rs1057077 B7 10233 12 6892346 NM_201650 NP_964013 A/T V317E plus 4945386 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.29 116 "HapMap,doubleHit,freq,cluster" 12p13 B7 gene 10517 rs1057077 B7 10233 12 6892346 NM_201650 NP_964013 A/T V317E plus 12208190 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 116 "HapMap,doubleHit,freq,cluster" 12p13 B7 gene 10518 rs1057149 TAP1 6890 6 32922920 NM_000593 NP_000584 A/G R708Q minus 23718238 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 10519 rs1057149 TAP1 6890 6 32922920 NM_000593 NP_000584 A/G R708Q minus 23718238 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 10520 rs1057149 TAP1 6890 6 32922920 NM_000593 NP_000584 A/G R708Q minus 23718238 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 10521 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 3212493 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10522 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 3212493 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10523 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 19379007 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10524 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 23751580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10525 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 23751580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10526 rs1057251 MOCOS 55034 18 32102579 NM_017947 NP_060417 C/T V867A plus 23751580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 18q12 molybdenum cofactor sulfurase 10527 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 4930778 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.16 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10528 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 12395343 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10529 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 12395343 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10530 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 23790978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10531 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 23790978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10532 rs1057335 SERPINF2 5345 17 1604403 NM_000934 NP_000925 A/G R434K plus 23790978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 10533 rs1057353 UPK3A 7380 22 44003841 NM_006953 NP_008884 C/G A154P plus 4933258 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.22 123 "by doubleHit,freq,cluster" 22q13.31 uroplakin 3A 10534 rs1057353 UPK3A 7380 22 44003841 NM_006953 NP_008884 C/G A154P plus 8305402 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 22q13.31 uroplakin 3A 10535 rs1057353 UPK3A 7380 22 44003841 NM_006953 NP_008884 C/G A154P plus 24092731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 22q13.31 uroplakin 3A 10536 rs1057353 UPK3A 7380 22 44003841 NM_006953 NP_008884 C/G A154P plus 24092731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 22q13.31 uroplakin 3A 10537 rs1057353 UPK3A 7380 22 44003841 NM_006953 NP_008884 C/G A154P plus 24092731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 22q13.31 uroplakin 3A 10538 rs1057539 RNF39 80352 6 30147328 NM_025236 NP_079512 A/G D268N minus 1883392 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by cluster,freq" 6p21.3 ring finger protein 39 10539 rs1057539 RNF39 80352 6 30147328 NM_170769 NP_739575 A/G D268N minus 1883392 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by cluster,freq" 6p21.3 ring finger protein 39 10540 rs1057744 JAG2 3714 14 104688087 NM_002226 NP_002217 A/G E501K minus 3207758 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 120 "HapMap,freq,cluster" 14q32 jagged 2 10541 rs1057744 JAG2 3714 14 104688087 NM_002226 NP_002217 A/G E501K minus 16659530 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 120 "HapMap,freq,cluster" 14q32 jagged 2 10542 rs1057744 JAG2 3714 14 104688087 NM_002226 NP_002217 A/G E501K minus 16659530 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "HapMap,freq,cluster" 14q32 jagged 2 10543 rs1057744 JAG2 3714 14 104688087 NM_145159 NP_660142 A/G E463K minus 3207758 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 120 "HapMap,freq,cluster" 14q32 jagged 2 10544 rs1057744 JAG2 3714 14 104688087 NM_145159 NP_660142 A/G E463K minus 16659530 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 120 "HapMap,freq,cluster" 14q32 jagged 2 10545 rs1057744 JAG2 3714 14 104688087 NM_145159 NP_660142 A/G E463K minus 16659530 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "HapMap,freq,cluster" 14q32 jagged 2 10546 rs1057746 SSX2IP 117178 1 84825250 NM_014021 NP_054740 C/T C578R minus 20440201 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq" 1p22.3 "synovial sarcoma, X breakpoint 2 interacting protein" 10547 rs1057868 POR 5447 7 75259657 NM_000941 NP_000932 C/T A503V plus 3172746 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.25 123 "by cluster,freq" 7q11.2 P450 (cytochrome) oxidoreductase 10548 rs1057868 POR 5447 7 75259657 NM_000941 NP_000932 C/T A503V plus 3172746 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by cluster,freq" 7q11.2 P450 (cytochrome) oxidoreductase 10549 rs1057868 POR 5447 7 75259657 NM_000941 NP_000932 C/T A503V plus 3248702 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 123 "by cluster,freq" 7q11.2 P450 (cytochrome) oxidoreductase 10550 rs1057896 GTF2I 2969 7 73559374 NM_001518 NP_001509 G/T L174V plus 1538910 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 by freq 7q11.23 "general transcription factor II, i" 10551 rs1057896 GTF2I 2969 7 73559374 NM_032999 NP_127492 G/T L174V plus 1538910 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 by freq 7q11.23 "general transcription factor II, i" 10552 rs1057896 GTF2I 2969 7 73559374 NM_033000 NP_127493 G/T L174V plus 1538910 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 by freq 7q11.23 "general transcription factor II, i" 10553 rs1057896 GTF2I 2969 7 73559374 NM_033001 NP_127494 G/T L174V plus 1538910 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 by freq 7q11.23 "general transcription factor II, i" 10554 rs1057907 DDX23 9416 12 47517029 NM_004818 NP_004809 C/T L309F minus 1538929 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 12q13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 10555 rs1057907 DDX23 9416 12 47517029 NM_004818 NP_004809 C/T L309F minus 1538929 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 12q13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 10556 rs1057907 DDX23 9416 12 47517029 NM_004818 NP_004809 C/T L309F minus 1538929 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 12q13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 10557 rs1057907 DDX23 9416 12 47517029 NM_004818 NP_004809 C/T L309F minus 1538929 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 12q13.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 10558 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 5586419 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.04 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10559 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 5586419 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.1 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10560 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 5586419 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10561 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 5586419 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10562 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 5586419 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10563 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 12588583 693 EGP_SNPS PDR90 NIHPDR 176 0.04 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10564 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 12588583 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10565 rs1057910 CYP2C9 1559 10 96731043 NM_000771 NP_000762 A/C I359L plus 28461932 1343 PHARMGKB_PAT PA130478246 464 0.03 123 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 10566 rs1057933 BTN3A1 11119 6 26516115 NM_007048 NP_008979 A/G S224N plus 1538978 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 6p22.1 "butyrophilin, subfamily 3, member A1" 10567 rs1057933 BTN3A1 11119 6 26516115 NM_194441 NP_919423 A/G S224N plus 1538978 1303 SEQUENOM CEPH CEPH (92) 92 0.03 86 by freq 6p22.1 "butyrophilin, subfamily 3, member A1" 10568 rs1057942 GBA 2629 1 152020276 NM_000157 NP_000148 A/G S310G minus 24819275 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 "by cluster,freq" 1q21 "glucosidase, beta; acid (includes glucosylceramidase)" 10569 rs1057954 RANBP2 5903 2 108826855 NM_006267 NP_006258 G/T V548L plus 24819280 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 2q12.3 RAN binding protein 2 10570 rs1057957 RANBP2 5903 2 108826955 NM_006267 NP_006258 A/G C581Y plus 24819282 1303 SEQUENOM CEPH CEPH (92) 184 0.28 123 by freq 2q12.3 RAN binding protein 2 10571 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 4935042 738 YUSUKE JBIC-ALLELE Japanese (752) 892 0.46 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10572 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 4935042 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10573 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 15683309 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10574 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 23900407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10575 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 23900407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10576 rs1058180 HIBCH 26275 2 190987128 NM_014362 NP_055177 A/G T46A minus 23900407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10577 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 4935042 738 YUSUKE JBIC-ALLELE Japanese (752) 892 0.46 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10578 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 4935042 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10579 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 15683309 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10580 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 23900407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10581 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 23900407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10582 rs1058180 HIBCH 26275 2 190987128 NM_198047 NP_932164 A/G T46A minus 23900407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,freq,cluster" 2q32.3 3-hydroxyisobutyryl-Coenzyme A hydrolase 10583 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 3232182 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.17 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10584 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.16 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10585 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10586 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10587 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10588 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10589 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.17 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10590 rs1058219 MYO5A 4644 15 50430856 NM_000259 NP_000250 C/T R1246C minus 6903881 1303 SEQUENOM CEPH CEPH (92) 92 0.28 113 "HapMap,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 10591 rs1058223 PSG11 5680 19 48221003 NM_002785 NP_002776 C/T M43T minus 1539568 1303 SEQUENOM CEPH CEPH (92) 92 0.3 86 by freq 19q13.2 pregnancy specific beta-1-glycoprotein 11 10592 rs1058396 SLC14A1 6563 18 41573517 NM_015865 NP_056949 A/G D280N plus 16763615 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 10593 rs1058396 SLC14A1 6563 18 41573517 NM_015865 NP_056949 A/G D280N plus 24489820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 10594 rs1058396 SLC14A1 6563 18 41573517 NM_015865 NP_056949 A/G D280N plus 24489820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 10595 rs1058396 SLC14A1 6563 18 41573517 NM_015865 NP_056949 A/G D280N plus 24489820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 10596 rs1058402 PVR 5817 19 49842454 NM_006505 NP_006496 A/G A67T plus 3206987 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.18 106 "HapMap,submitter,freq,cluster" 19q13.2 poliovirus receptor 10597 rs1058402 PVR 5817 19 49842454 NM_006505 NP_006496 A/G A67T plus 3206987 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 106 "HapMap,submitter,freq,cluster" 19q13.2 poliovirus receptor 10598 rs1058402 PVR 5817 19 49842454 NM_006505 NP_006496 A/G A67T plus 3206987 1303 SEQUENOM CEPH CEPH (92) 92 1 106 "HapMap,submitter,freq,cluster" 19q13.2 poliovirus receptor 10599 rs1058576 HTR2A 3356 13 46307127 NM_000621 NP_000612 C/T S421F minus 1540240 1303 SEQUENOM CEPH CEPH (92) 92 0.39 106 by freq 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 10600 rs1058587 GDF15 9518 19 18360422 NM_004864 NP_004855 C/G H202D minus 1540261 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq" 19p13.1-13.2 growth differentiation factor 15 10601 rs1058587 GDF15 9518 19 18360422 NM_004864 NP_004855 C/G H202D minus 24196841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 19p13.1-13.2 growth differentiation factor 15 10602 rs1058587 GDF15 9518 19 18360422 NM_004864 NP_004855 C/G H202D minus 24196841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 19p13.1-13.2 growth differentiation factor 15 10603 rs1058587 GDF15 9518 19 18360422 NM_004864 NP_004855 C/G H202D minus 24196841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq" 19p13.1-13.2 growth differentiation factor 15 10604 rs1058768 TINAG 27283 6 54294106 NM_014464 NP_055279 C/T S158P plus 3242657 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.15 123 "by doubleHit,freq,cluster" 6p11.2-p12 tubulointerstitial nephritis antigen 10605 rs1058768 TINAG 27283 6 54294106 NM_014464 NP_055279 C/T S158P plus 10272044 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 6p11.2-p12 tubulointerstitial nephritis antigen 10606 rs1058768 TINAG 27283 6 54294106 NM_014464 NP_055279 C/T S158P plus 24372618 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6p11.2-p12 tubulointerstitial nephritis antigen 10607 rs1058768 TINAG 27283 6 54294106 NM_014464 NP_055279 C/T S158P plus 24372618 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6p11.2-p12 tubulointerstitial nephritis antigen 10608 rs1058768 TINAG 27283 6 54294106 NM_014464 NP_055279 C/T S158P plus 24372618 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p11.2-p12 tubulointerstitial nephritis antigen 10609 rs1058793 ATP10D 57205 4 47424974 NM_020453 NP_065186 A/G V1240I plus 4935610 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.43 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 10610 rs1058793 ATP10D 57205 4 47424974 NM_020453 NP_065186 A/G V1240I plus 24174249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.05 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 10611 rs1058793 ATP10D 57205 4 47424974 NM_020453 NP_065186 A/G V1240I plus 24174249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.41 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 10612 rs1058793 ATP10D 57205 4 47424974 NM_020453 NP_065186 A/G V1240I plus 24174249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 10613 rs1058793 ATP10D 57205 4 47424974 NM_020453 NP_065186 A/G V1240I plus 24796213 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 10614 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 3177859 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.41 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10615 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 3217949 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.49 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10616 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 5608583 693 EGP_SNPS PDR90 NIHPDR 170 0.48 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10617 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 5608583 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10618 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 5608583 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10619 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 24110922 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10620 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 24110922 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10621 rs1058808 ERBB2 2064 17 35137563 NM_004448 NP_004439 C/G P1170A plus 24110922 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 10622 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 3176157 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.17 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10623 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 4328211 649 FHCRC POPU1 USA (20) 40 0.25 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10624 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 4924762 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.39 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10625 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 16360973 649 FHCRC POPU1 USA (20) 40 0.38 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10626 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 19121109 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10627 rs1058885 CSF1 1435 1 110178508 NM_000757 NP_000748 C/T L408P plus 20421284 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 62 0.44 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10628 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 3176157 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.17 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10629 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 4328211 649 FHCRC POPU1 USA (20) 40 0.25 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10630 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 4924762 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.39 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10631 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 16360973 649 FHCRC POPU1 USA (20) 40 0.38 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10632 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 19121109 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10633 rs1058885 CSF1 1435 1 110178508 NM_172212 NP_757351 C/T L408P plus 20421284 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 62 0.44 121 "by doubleHit,freq,cluster" 1p21-p13 colony stimulating factor 1 (macrophage) 10634 rs1058930 CYP2C8 1558 10 96808109 NM_000770 NP_000761 C/G I264M minus 16356404 693 EGP_SNPS PDR90 NIHPDR 178 0.03 120 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 10635 rs1058930 CYP2C8 1558 10 96808109 NM_030878 NP_110518 C/G I264M minus 16356404 693 EGP_SNPS PDR90 NIHPDR 178 0.03 120 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 10636 rs1059060 PMS2 5395 7 5790581 NM_000535 NP_000526 A/G N775S minus 2667728 506 NCBI NIHPDR NIHPDR 74 0.41 106 "by cluster,freq" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 10637 rs1059060 PMS2 5395 7 5790581 NM_000535 NP_000526 A/G N775S minus 3172639 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.17 106 "by cluster,freq" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 10638 rs1059199 ZNF562 54811 19 9625128 NM_017656 NP_060126 A/G E188K minus 1541440 1303 SEQUENOM CEPH CEPH (92) 92 0.24 86 by freq 19p13.2 zinc finger protein 562 10639 rs1059240 HOMER3 9454 19 18901312 NM_004838 NP_004829 C/G S342R minus 16794995 1303 SEQUENOM CEPH CEPH (92) 92 0.1 121 "by cluster,freq" 19p13.11 homer homolog 3 (Drosophila) 10640 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 4932199 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.33 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10641 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.28 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10642 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.29 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10643 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 776 SNP500CANCER AFR1 African / African-American (24) 48 0.21 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10644 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 777 SNP500CANCER HISP1 Hispanic (23) 46 0.28 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10645 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10646 rs1059369 GDF15 9518 19 18358141 NM_004864 NP_004855 A/T S48T minus 8819829 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10647 rs1059463 HLA-A 3105 6 30018721 NM_002116 NP_002107 C/G Q94H plus 20421629 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "by cluster,freq" 6p21.3 "major histocompatibility complex, class I, A" 10648 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 6903942 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.19 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10649 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 6903942 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.29 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10650 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 6903942 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10651 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 6903942 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10652 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 6903942 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10653 rs1059491 SULT1A2 6799 16 28511156 NM_001054 NP_001045 A/C N235T minus 16341392 1166 PHARMGKB_PPII PA128747821 240 0.33 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10654 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 6903942 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.19 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10655 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 6903942 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.29 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10656 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 6903942 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10657 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 6903942 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10658 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 6903942 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10659 rs1059491 SULT1A2 6799 16 28511156 NM_177528 NP_803564 A/C N235T minus 16341392 1166 PHARMGKB_PPII PA128747821 240 0.33 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 10660 rs1059508 VPS41 27072 7 38539123 NM_014396 NP_055211 A/G R843H minus 1542069 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 7p14-p13 vacuolar protein sorting 41 (yeast) 10661 rs1059508 VPS41 27072 7 38539123 NM_080631 NP_542198 A/G R768H minus 1542069 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 7p14-p13 vacuolar protein sorting 41 (yeast) 10662 rs1059509 HLA-A 3105 6 30019133 NM_002116 NP_002107 A/C N151K plus 20421684 1303 SEQUENOM CEPH CEPH (92) 92 0.25 121 by freq 6p21.3 "major histocompatibility complex, class I, A" 10663 rs1059516 HLA-A 3105 6 30019177 NM_002116 NP_002107 C/T I166T plus 20421695 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 by freq 6p21.3 "major histocompatibility complex, class I, A" 10664 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 4932200 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.43 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10665 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.31 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10666 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10667 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10668 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 777 SNP500CANCER HISP1 Hispanic (23) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10669 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10670 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 6903896 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.4 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10671 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 24684769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10672 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 24684769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10673 rs1059519 GDF15 9518 19 18358024 NM_004864 NP_004855 C/G V9L minus 24684769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 19p13.1-13.2 growth differentiation factor 15 10674 rs1059539 HLA-A 3105 6 30019225 NM_002116 NP_002107 C/T A182V plus 24797204 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 6p21.3 "major histocompatibility complex, class I, A" 10675 rs1059576 HLA-DRB1 3123 6 32660050 NM_002124 NP_002115 A/C H62N minus 24796309 1303 SEQUENOM CEPH CEPH (92) 184 0.45 123 by freq 6p21.3 "major histocompatibility complex, class II, DR beta 1" 10676 rs1059779 WBSCR21 83451 7 72595162 NM_148914 NP_683712 A/G E125G minus 1542691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,submitter,freq,cluster" 7q11.23 Williams Beuren syndrome chromosome region 21 10677 rs1059779 WBSCR21 83451 7 72595162 NM_148914 NP_683712 A/G E125G minus 17153080 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "HapMap,submitter,freq,cluster" 7q11.23 Williams Beuren syndrome chromosome region 21 10678 rs1059780 TPM2 7169 9 35675107 NM_213674 NP_998839 A/G R198Q minus 1542692 1303 SEQUENOM CEPH CEPH (92) 92 0.14 86 by freq 9p13.2-p13.1 tropomyosin 2 (beta) 10679 rs1059854 MYH6 4624 14 22924045 NM_002471 NP_002462 A/T T1737S minus 1542883 1303 SEQUENOM CEPH CEPH (92) 92 0.12 106 by freq 14q12 "myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)" 10680 rs1059913 KLF4 9314 9 107329286 NM_004235 NP_004226 C/G T306S minus 1542982 1303 SEQUENOM CEPH CEPH (92) 92 0.02 86 by freq 9q31 Kruppel-like factor 4 (gut) 10681 rs1060105 SBNO1 55206 12 122331099 NM_018183 NP_060653 A/G S728N minus 20952993 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq" 12q24.31 "sno, strawberry notch homolog 1 (Drosophila)" 10682 rs1060105 SBNO1 55206 12 122331099 NM_018183 NP_060653 A/G S728N minus 24362690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 12q24.31 "sno, strawberry notch homolog 1 (Drosophila)" 10683 rs1060105 SBNO1 55206 12 122331099 NM_018183 NP_060653 A/G S728N minus 24362690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 12q24.31 "sno, strawberry notch homolog 1 (Drosophila)" 10684 rs1060105 SBNO1 55206 12 122331099 NM_018183 NP_060653 A/G S728N minus 24362690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 12q24.31 "sno, strawberry notch homolog 1 (Drosophila)" 10685 rs1060130 ANK1 286 8 41649489 NM_000037 NP_000028 A/G V1546I minus 1543349 1303 SEQUENOM CEPH CEPH (92) 92 0.25 86 by freq 8p11.1 "ankyrin 1, erythrocytic" 10686 rs1060130 ANK1 286 8 41649489 NM_020475 NP_065208 A/G V1546I minus 1543349 1303 SEQUENOM CEPH CEPH (92) 92 0.25 86 by freq 8p11.1 "ankyrin 1, erythrocytic" 10687 rs1060130 ANK1 286 8 41649489 NM_020476 NP_065209 A/G V1546I minus 1543349 1303 SEQUENOM CEPH CEPH (92) 92 0.25 86 by freq 8p11.1 "ankyrin 1, erythrocytic" 10688 rs1060242 ADHFE1 137872 8 67543082 NM_144650 NP_653251 C/T C401R plus 4925343 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.42 123 "by doubleHit,freq,cluster" 8q12.3 "alcohol dehydrogenase, iron containing, 1" 10689 rs1060242 ADHFE1 137872 8 67543082 NM_144650 NP_653251 C/T C401R plus 24538000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 8q12.3 "alcohol dehydrogenase, iron containing, 1" 10690 rs1060242 ADHFE1 137872 8 67543082 NM_144650 NP_653251 C/T C401R plus 24538000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 8q12.3 "alcohol dehydrogenase, iron containing, 1" 10691 rs1060242 ADHFE1 137872 8 67543082 NM_144650 NP_653251 C/T C401R plus 24538000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 8q12.3 "alcohol dehydrogenase, iron containing, 1" 10692 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 1544058 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.06 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10693 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 1544058 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.25 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10694 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 1544058 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.18 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10695 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 3177277 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.32 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10696 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 3177277 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10697 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 3177277 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10698 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 5007889 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.25 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10699 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 24240587 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10700 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 24240587 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10701 rs1060407 MAP4 4134 3 47933041 NM_002375 NP_002366 A/C S427Y minus 24240587 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,submitter,freq,cluster" 3p21 microtubule-associated protein 4 10702 rs1060463 CYP4F11 57834 19 15886176 NM_021187 NP_067010 A/G D446N minus 1544179 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,submitter,freq" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 11" 10703 rs1060463 CYP4F11 57834 19 15886176 NM_021187 NP_067010 A/G D446N minus 21506661 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,submitter,freq" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 11" 10704 rs1060622 CGI-100 50999 1 93332414 NM_016040 NP_057124 C/T T175I minus 2987583 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.33 120 "by doubleHit,freq,cluster" 1pter-q31.3 CGI-100 protein 10705 rs1060622 CGI-100 50999 1 93332414 NM_016040 NP_057124 C/T T175I minus 6696533 1303 SEQUENOM CEPH CEPH (92) 92 0.28 120 "by doubleHit,freq,cluster" 1pter-q31.3 CGI-100 protein 10706 rs1060742 WDR35 57539 2 20110643 NM_020779 NP_065830 C/T Q18R plus 4917653 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.19 120 "by doubleHit,freq,cluster" 2p24.3 WD repeat domain 35 10707 rs1060878 MGEA6 4253 14 38887896 NM_005930 NP_005921 A/G G738R plus 3240824 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10708 rs1060878 MGEA6 4253 14 38887896 NM_005930 NP_005921 A/G G738R plus 10751465 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10709 rs1060878 MGEA6 4253 14 38887896 NM_203354 NP_976229 A/G G726R plus 3240824 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10710 rs1060878 MGEA6 4253 14 38887896 NM_203354 NP_976229 A/G G726R plus 10751465 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10711 rs1060878 MGEA6 4253 14 38887896 NM_203355 NP_976230 A/G G695R plus 3240824 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10712 rs1060878 MGEA6 4253 14 38887896 NM_203355 NP_976230 A/G G695R plus 10751465 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10713 rs1060878 MGEA6 4253 14 38887896 NM_203356 NP_976231 A/G G709R plus 3240824 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10714 rs1060878 MGEA6 4253 14 38887896 NM_203356 NP_976231 A/G G709R plus 10751465 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10715 rs1060878 MGEA6 4253 14 38887896 NM_203357 NP_976232 A/G G663R plus 3240824 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10716 rs1060878 MGEA6 4253 14 38887896 NM_203357 NP_976232 A/G G663R plus 10751465 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 10717 rs1060896 SLC28A2 9153 15 43341559 NM_004212 NP_004203 A/C S75R plus 1545161 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.28 123 "HapMap,doubleHit,submitter,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 10718 rs1060896 SLC28A2 9153 15 43341559 NM_004212 NP_004203 A/C S75R plus 21265720 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,submitter,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 10719 rs1060896 SLC28A2 9153 15 43341559 NM_004212 NP_004203 A/C S75R plus 24467657 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 10720 rs1060896 SLC28A2 9153 15 43341559 NM_004212 NP_004203 A/C S75R plus 24467657 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 10721 rs1060896 SLC28A2 9153 15 43341559 NM_004212 NP_004203 A/C S75R plus 24467657 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 10722 rs1060900 TRIM16 10626 17 15472727 NM_006470 NP_006461 A/G N541S minus 24797218 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 17p11.2 tripartite motif-containing 16 10723 rs1061170 HF1 3075 1 193390894 NM_000186 NP_000177 C/T H402Y plus 20487092 1303 SEQUENOM CEPH CEPH (92) 92 0.38 121 "by doubleHit,freq" 1q32 H factor 1 (complement) 10724 rs1061305 NEB 4703 2 152172487 NM_004543 NP_004534 A/G I6546V minus 14495259 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 2q22 nebulin 10725 rs1061305 NEB 4703 2 152172487 NM_004543 NP_004534 A/G I6546V minus 24618893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 2q22 nebulin 10726 rs1061305 NEB 4703 2 152172487 NM_004543 NP_004534 A/G I6546V minus 24618893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 2q22 nebulin 10727 rs1061305 NEB 4703 2 152172487 NM_004543 NP_004534 A/G I6546V minus 24618893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 2q22 nebulin 10728 rs1061347 SENP6 26054 6 76445079 NM_015571 NP_056386 A/G E637K plus 1546156 1303 SEQUENOM CEPH CEPH (92) 92 0.32 106 by freq 6q13-q14.3 SUMO1/sentrin specific protease 6 10729 rs1061409 PLSCR4 57088 3 147400459 NM_020353 NP_065086 A/G I155V minus 4948724 738 YUSUKE JBIC-ALLELE Japanese (752) 1100 0.17 123 "by cluster,freq" 3q24 phospholipid scramblase 4 10730 rs1061409 PLSCR4 57088 3 147400459 NM_020353 NP_065086 A/G I155V minus 14169388 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by cluster,freq" 3q24 phospholipid scramblase 4 10731 rs1061409 PLSCR4 57088 3 147400459 NM_020353 NP_065086 A/G I155V minus 24340491 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 3q24 phospholipid scramblase 4 10732 rs1061409 PLSCR4 57088 3 147400459 NM_020353 NP_065086 A/G I155V minus 24340491 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 3q24 phospholipid scramblase 4 10733 rs1061409 PLSCR4 57088 3 147400459 NM_020353 NP_065086 A/G I155V minus 24340491 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 3q24 phospholipid scramblase 4 10734 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 5002983 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10735 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 6572349 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10736 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 6572349 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10737 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 24452272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10738 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 24452272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10739 rs1061436 DRIM 27340 12 100279464 NM_014503 NP_055318 C/G E2612Q plus 24452272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 12q23 down-regulated in metastasis 10740 rs1061472 ATP7B 540 13 51422489 NM_000053 NP_000044 A/G K832R minus 16621895 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 10741 rs1061472 ATP7B 540 13 51422489 NM_000053 NP_000044 A/G K832R minus 23438167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 10742 rs1061472 ATP7B 540 13 51422489 NM_000053 NP_000044 A/G K832R minus 23438167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 10743 rs1061472 ATP7B 540 13 51422489 NM_000053 NP_000044 A/G K832R minus 23438167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 10744 rs1061494 TNC 3371 9 114926134 NM_002160 NP_002151 C/T Q680R plus 2609198 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 10745 rs1061494 TNC 3371 9 114926134 NM_002160 NP_002151 C/T Q680R plus 2609198 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 10746 rs1061494 TNC 3371 9 114926134 NM_002160 NP_002151 C/T Q680R plus 23531666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 10747 rs1061494 TNC 3371 9 114926134 NM_002160 NP_002151 C/T Q680R plus 23531666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 10748 rs1061494 TNC 3371 9 114926134 NM_002160 NP_002151 C/T Q680R plus 23531666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 10749 rs1061502 IRF7 3665 11 604318 NM_001572 NP_001563 A/G K179E minus 19193690 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by cluster,freq" 11p15.5 interferon regulatory factor 7 10750 rs1061502 IRF7 3665 11 604318 NM_004029 NP_004020 A/G K179E minus 19193690 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by cluster,freq" 11p15.5 interferon regulatory factor 7 10751 rs1061502 IRF7 3665 11 604318 NM_004031 NP_004022 A/G K192E minus 19193690 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by cluster,freq" 11p15.5 interferon regulatory factor 7 10752 rs1061518 SDHA 6389 5 276630 NM_004168 NP_004159 G/T F33V plus 1546512 1303 SEQUENOM CEPH CEPH (92) 92 0.1 106 by freq 5p15 "succinate dehydrogenase complex, subunit A, flavoprotein (Fp)" 10753 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 3173181 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.13 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10754 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 7990727 693 EGP_SNPS PDR90 NIHPDR 172 0.13 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10755 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 7990727 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10756 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 12568611 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1841 0.2 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10757 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 23845243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10758 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 23845243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10759 rs1061622 TNFRSF1B 7133 1 12187221 NM_001066 NP_001057 G/T M196R plus 23845243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 10760 rs1061679 LILRB1 10859 19 59834895 NM_006669 NP_006660 C/T L68P plus 5363752 1303 SEQUENOM CEPH CEPH (92) 92 0.28 120 "by doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 10761 rs1061680 LILRB1 10859 19 59835264 NM_006669 NP_006660 C/T I142T plus 5363753 1303 SEQUENOM CEPH CEPH (92) 92 0.23 119 "by doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 10762 rs1061681 LILRB1 10859 19 59835303 NM_006669 NP_006660 G/T S155I plus 3035032 1303 SEQUENOM CEPH CEPH (92) 92 0.35 119 "by doubleHit,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1" 10763 rs1061768 ZNF283 284349 19 49044479 XM_371174 XP_371174 A/G R802H plus 1547014 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,submitter,freq,cluster" 19q13.32 zinc finger protein 283 10764 rs1061768 ZNF283 284349 19 49044479 XM_371174 XP_371174 A/G R802H plus 1547014 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,submitter,freq,cluster" 19q13.32 zinc finger protein 283 10765 rs1061768 ZNF283 284349 19 49044479 XM_371174 XP_371174 A/G R802H plus 23765062 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 19q13.32 zinc finger protein 283 10766 rs1061768 ZNF283 284349 19 49044479 XM_371174 XP_371174 A/G R802H plus 23765062 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 19q13.32 zinc finger protein 283 10767 rs1061768 ZNF283 284349 19 49044479 XM_371174 XP_371174 A/G R802H plus 23765062 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 19q13.32 zinc finger protein 283 10768 rs1061769 ZNF283 284349 19 49044506 XM_371174 XP_371174 A/G C811Y plus 24820782 1303 SEQUENOM CEPH CEPH (92) 184 0.3 123 "by doubleHit,freq,cluster" 19q13.32 zinc finger protein 283 10769 rs1061954 COL13A1 1305 10 71360257 NM_005203 NP_005194 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10770 rs1061954 COL13A1 1305 10 71360257 NM_080798 NP_542988 C/G H519Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10771 rs1061954 COL13A1 1305 10 71360257 NM_080799 NP_542989 C/G H514Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10772 rs1061954 COL13A1 1305 10 71360257 NM_080800 NP_542990 C/G H512Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10773 rs1061954 COL13A1 1305 10 71360257 NM_080801 NP_542991 C/G H509Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10774 rs1061954 COL13A1 1305 10 71360257 NM_080802 NP_542992 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10775 rs1061954 COL13A1 1305 10 71360257 NM_080803 NP_542993 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10776 rs1061954 COL13A1 1305 10 71360257 NM_080804 NP_542994 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10777 rs1061954 COL13A1 1305 10 71360257 NM_080805 NP_542995 C/G H502Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10778 rs1061954 COL13A1 1305 10 71360257 NM_080806 NP_542996 C/G H490Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10779 rs1061954 COL13A1 1305 10 71360257 NM_080807 NP_542997 C/G H512Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10780 rs1061954 COL13A1 1305 10 71360257 NM_080808 NP_542998 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10781 rs1061954 COL13A1 1305 10 71360257 NM_080809 NP_542999 C/G H531Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10782 rs1061954 COL13A1 1305 10 71360257 NM_080810 NP_543000 C/G H478Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10783 rs1061954 COL13A1 1305 10 71360257 NM_080811 NP_543001 C/G H509Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10784 rs1061954 COL13A1 1305 10 71360257 NM_080812 NP_543002 C/G H474Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10785 rs1061954 COL13A1 1305 10 71360257 NM_080813 NP_543003 C/G H471Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10786 rs1061954 COL13A1 1305 10 71360257 NM_080814 NP_543004 C/G H469Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10787 rs1061954 COL13A1 1305 10 71360257 NM_080815 NP_543005 C/G H480Q plus 1547451 1303 SEQUENOM CEPH CEPH (92) 92 0.06 86 by freq 10q22 "collagen, type XIII, alpha 1" 10788 rs1062062 TBC1D8 11138 2 101086443 NM_007063 NP_008994 A/G G711R minus 1547676 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,submitter,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 10789 rs1062062 TBC1D8 11138 2 101086443 NM_007063 NP_008994 A/G G711R minus 1547676 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,submitter,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 10790 rs1062062 TBC1D8 11138 2 101086443 NM_007063 NP_008994 A/G G711R minus 24285910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 10791 rs1062062 TBC1D8 11138 2 101086443 NM_007063 NP_008994 A/G G711R minus 24285910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 10792 rs1062062 TBC1D8 11138 2 101086443 NM_007063 NP_008994 A/G G711R minus 24285910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 10793 rs1062087 TBC1D4 9882 13 74782217 XM_375032 XP_375032 A/G V1063I minus 3241543 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.25 123 "by doubleHit,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 10794 rs1062087 TBC1D4 9882 13 74782217 XM_375032 XP_375032 A/G V1063I minus 11082378 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 10795 rs1062087 TBC1D4 9882 13 74782217 XM_375032 XP_375032 A/G V1063I minus 23547925 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by doubleHit,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 10796 rs1062087 TBC1D4 9882 13 74782217 XM_375032 XP_375032 A/G V1063I minus 23547925 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 10797 rs1062087 TBC1D4 9882 13 74782217 XM_375032 XP_375032 A/G V1063I minus 23547925 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "by doubleHit,freq,cluster" 13q21.33 "TBC1 domain family, member 4" 10798 rs1062398 ACTA2 59 10 90684976 NM_001613 NP_001604 A/C H373P minus 1548376 1303 SEQUENOM CEPH CEPH (92) 92 0.04 106 by freq 10q23.3 "actin, alpha 2, smooth muscle, aorta" 10799 rs1062465 MPHOSPH1 9585 10 91487611 NM_016195 NP_057279 A/T D971E plus 17401262 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 10800 rs1062465 MPHOSPH1 9585 10 91487611 NM_016195 NP_057279 A/T D971E plus 23580794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 10801 rs1062465 MPHOSPH1 9585 10 91487611 NM_016195 NP_057279 A/T D971E plus 23580794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 10802 rs1062465 MPHOSPH1 9585 10 91487611 NM_016195 NP_057279 A/T D971E plus 23580794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 10803 rs1062505 GPLD1 2822 6 24558061 NM_001503 NP_001494 A/G V461M minus 1548594 1303 SEQUENOM CEPH CEPH (92) 92 0.44 86 by freq 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 10804 rs1062553 EHHADH 1962 3 186435907 NM_001966 NP_001957 C/T T75I minus 1548675 1303 SEQUENOM CEPH CEPH (92) 92 0.13 86 by freq 3q26.3-q28 "enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" 10805 rs1062557 GRP 2922 18 55038487 NM_002091 NP_002082 A/C R4S plus 3198340 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.19 123 "by doubleHit,freq,cluster" 18q21.1-q21.32 gastrin-releasing peptide 10806 rs1062557 GRP 2922 18 55038487 NM_002091 NP_002082 A/C R4S plus 10910226 1303 SEQUENOM CEPH CEPH (92) 93 0.01 123 "by doubleHit,freq,cluster" 18q21.1-q21.32 gastrin-releasing peptide 10807 rs1062557 GRP 2922 18 55038487 NM_002091 NP_002082 A/C R4S plus 24203977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 18q21.1-q21.32 gastrin-releasing peptide 10808 rs1062557 GRP 2922 18 55038487 NM_002091 NP_002082 A/C R4S plus 24203977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 18q21.1-q21.32 gastrin-releasing peptide 10809 rs1062557 GRP 2922 18 55038487 NM_002091 NP_002082 A/C R4S plus 24203977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 18q21.1-q21.32 gastrin-releasing peptide 10810 rs1062571 IFNA4 3441 9 21177311 NM_021068 NP_066546 A/G A74T minus 4936508 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.15 121 "by doubleHit,freq,cluster" 9p22 "interferon, alpha 4" 10811 rs1062633 MST1R 4486 3 49899944 NM_002447 NP_002438 A/G R1335G minus 10069016 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 10812 rs1062633 MST1R 4486 3 49899944 NM_002447 NP_002438 A/G R1335G minus 10069016 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 10813 rs1062633 MST1R 4486 3 49899944 NM_002447 NP_002438 A/G R1335G minus 24276084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 10814 rs1062633 MST1R 4486 3 49899944 NM_002447 NP_002438 A/G R1335G minus 24276084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 10815 rs1062633 MST1R 4486 3 49899944 NM_002447 NP_002438 A/G R1335G minus 24276084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 10816 rs1062727 EPN2 22905 17 19175941 NM_014964 NP_055779 A/C P532T plus 1549060 1303 SEQUENOM CEPH CEPH (92) 92 0.18 106 by freq 17p11.2 epsin 2 10817 rs1062727 EPN2 22905 17 19175941 NM_148921 NP_683723 A/C P475T plus 1549060 1303 SEQUENOM CEPH CEPH (92) 92 0.18 106 by freq 17p11.2 epsin 2 10818 rs1062786 MKRN1 23608 7 139607634 NM_013446 NP_038474 C/T V439A minus 1549160 1303 SEQUENOM CEPH CEPH (92) 92 0.14 86 by freq 7q34 "makorin, ring finger protein, 1" 10819 rs1062863 NAT8 9027 2 73779875 NM_003960 NP_003951 A/C T179N minus 1549351 1303 SEQUENOM CEPH CEPH (92) 92 0.26 106 by freq 2p13.1-p12 N-acetyltransferase 8 (camello like) 10820 rs1062923 GEMIN4 50628 17 595817 NM_015721 NP_056536 C/T I739T minus 21431147 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 by freq 17p13 gem (nuclear organelle) associated protein 4 10821 rs1063135 RARRES1 5918 3 159911283 NM_002888 NP_002879 C/T L161F minus 1549937 1303 SEQUENOM CEPH CEPH (92) 92 0.11 89 by freq 3q25.32 retinoic acid receptor responder (tazarotene induced) 1 10822 rs1063135 RARRES1 5918 3 159911283 NM_206963 NP_996846 C/T L161F minus 1549937 1303 SEQUENOM CEPH CEPH (92) 92 0.11 89 by freq 3q25.32 retinoic acid receptor responder (tazarotene induced) 1 10823 rs1063156 ZNF85 7639 19 20923956 NM_003429 NP_003420 A/G T266A plus 1550003 1303 SEQUENOM CEPH CEPH (92) 92 0.13 86 by freq 19p13.1-p12 "zinc finger protein 85 (HPF4, HTF1)" 10824 rs1063193 PRR4 11272 12 10891047 NM_007244 NP_009175 C/T R96Q plus 3180330 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 proline rich 4 (lacrimal) 10825 rs1063193 PRR4 11272 12 10891047 NM_007244 NP_009175 C/T R96Q plus 20943199 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 proline rich 4 (lacrimal) 10826 rs1063193 PRR4 11272 12 10891047 NM_007244 NP_009175 C/T R96Q plus 24701286 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 proline rich 4 (lacrimal) 10827 rs1063193 PRR4 11272 12 10891047 NM_007244 NP_009175 C/T R96Q plus 24701286 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 proline rich 4 (lacrimal) 10828 rs1063193 PRR4 11272 12 10891047 NM_007244 NP_009175 C/T R96Q plus 24701286 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 proline rich 4 (lacrimal) 10829 rs1063257 EIF3S9 8662 7 2192307 NM_003751 NP_003742 A/C D793E plus 1550221 1303 SEQUENOM CEPH CEPH (92) 92 0.36 86 by freq 7p22.3 "eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa" 10830 rs1063257 EIF3S9 8662 7 2192307 NM_182712 NP_874371 A/C D754E plus 1550221 1303 SEQUENOM CEPH CEPH (92) 92 0.36 86 by freq 7p22.3 "eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa" 10831 rs1063273 PRSS3 5646 9 33788529 NM_002771 NP_002762 C/G T167S plus 1550260 1303 SEQUENOM CEPH CEPH (92) 92 0.17 86 by freq 9p11.2 "protease, serine, 3 (mesotrypsin)" 10832 rs1063310 GABRP 2568 5 170171690 NM_014211 NP_055026 A/C F391L plus 4991847 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,submitter,freq,cluster" 5q33-q34 "gamma-aminobutyric acid (GABA) A receptor, pi" 10833 rs1063310 GABRP 2568 5 170171690 NM_014211 NP_055026 A/C F391L plus 4991847 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,submitter,freq,cluster" 5q33-q34 "gamma-aminobutyric acid (GABA) A receptor, pi" 10834 rs1063310 GABRP 2568 5 170171690 NM_014211 NP_055026 A/C F391L plus 24675348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 5q33-q34 "gamma-aminobutyric acid (GABA) A receptor, pi" 10835 rs1063310 GABRP 2568 5 170171690 NM_014211 NP_055026 A/C F391L plus 24675348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,submitter,freq,cluster" 5q33-q34 "gamma-aminobutyric acid (GABA) A receptor, pi" 10836 rs1063310 GABRP 2568 5 170171690 NM_014211 NP_055026 A/C F391L plus 24675348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 5q33-q34 "gamma-aminobutyric acid (GABA) A receptor, pi" 10837 rs1063412 PIGC 5279 1 169142624 NM_002642 NP_002633 C/T P266S minus 3177605 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.32 121 "by doubleHit,submitter,freq,cluster" 1q23-q25 "phosphatidylinositol glycan, class C" 10838 rs1063412 PIGC 5279 1 169142624 NM_002642 NP_002633 C/T P266S minus 15411251 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,submitter,freq,cluster" 1q23-q25 "phosphatidylinositol glycan, class C" 10839 rs1063412 PIGC 5279 1 169142624 NM_153747 NP_714969 C/T P266S minus 3177605 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.32 121 "by doubleHit,submitter,freq,cluster" 1q23-q25 "phosphatidylinositol glycan, class C" 10840 rs1063412 PIGC 5279 1 169142624 NM_153747 NP_714969 C/T P266S minus 15411251 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,submitter,freq,cluster" 1q23-q25 "phosphatidylinositol glycan, class C" 10841 rs1063445 GANAB 23193 11 62156684 NM_014610 NP_055425 C/T R331C minus 23625747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10842 rs1063445 GANAB 23193 11 62156684 NM_014610 NP_055425 C/T R331C minus 23625747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10843 rs1063445 GANAB 23193 11 62156684 NM_014610 NP_055425 C/T R331C minus 23625747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10844 rs1063445 GANAB 23193 11 62156684 NM_198334 NP_938148 C/T R309C minus 23625747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10845 rs1063445 GANAB 23193 11 62156684 NM_198334 NP_938148 C/T R309C minus 23625747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10846 rs1063445 GANAB 23193 11 62156684 NM_198334 NP_938148 C/T R309C minus 23625747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10847 rs1063445 GANAB 23193 11 62156684 NM_198335 NP_938149 C/T R331C minus 23625747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10848 rs1063445 GANAB 23193 11 62156684 NM_198335 NP_938149 C/T R331C minus 23625747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10849 rs1063445 GANAB 23193 11 62156684 NM_198335 NP_938149 C/T R331C minus 23625747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q12.3 "glucosidase, alpha; neutral AB" 10850 rs1063456 INA 9118 10 105027403 NM_032727 NP_116116 C/G D149H plus 1550696 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 by freq 10q24.33 "internexin neuronal intermediate filament protein, alpha" 10851 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 2240338 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10852 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 2240338 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 20 0.15 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10853 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 2240338 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 86 0.12 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10854 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 2240338 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10855 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 2240338 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10856 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 24169460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10857 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 24169460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10858 rs1063478 HLA-DMA 3108 6 33025522 NM_006120 NP_006111 C/T V166I plus 24169460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq" 6p21.3 "major histocompatibility complex, class II, DM alpha" 10859 rs1063479 PLEK 5341 2 68534565 NM_002664 NP_002655 A/G R340K plus 9917732 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "by doubleHit,freq,cluster" 2p13.3 pleckstrin 10860 rs1063479 PLEK 5341 2 68534565 NM_002664 NP_002655 A/G R340K plus 24267407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 2p13.3 pleckstrin 10861 rs1063479 PLEK 5341 2 68534565 NM_002664 NP_002655 A/G R340K plus 24267407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 2p13.3 pleckstrin 10862 rs1063479 PLEK 5341 2 68534565 NM_002664 NP_002655 A/G R340K plus 24267407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 2p13.3 pleckstrin 10863 rs1063499 C7 730 5 40991318 NM_000587 NP_000578 C/G S389T minus 19642554 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 complement component 7 10864 rs1063499 C7 730 5 40991318 NM_000587 NP_000578 C/G S389T minus 19642554 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 complement component 7 10865 rs1063499 C7 730 5 40991318 NM_000587 NP_000578 C/G S389T minus 23978570 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 complement component 7 10866 rs1063499 C7 730 5 40991318 NM_000587 NP_000578 C/G S389T minus 23978570 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 complement component 7 10867 rs1063499 C7 730 5 40991318 NM_000587 NP_000578 C/G S389T minus 23978570 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 complement component 7 10868 rs1063535 MKI67 4288 10 129792271 NM_002417 NP_002408 C/T P2608L minus 12078765 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 10869 rs1063535 MKI67 4288 10 129792271 NM_002417 NP_002408 C/T P2608L minus 23644000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 10870 rs1063535 MKI67 4288 10 129792271 NM_002417 NP_002408 C/T P2608L minus 23644000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 10871 rs1063535 MKI67 4288 10 129792271 NM_002417 NP_002408 C/T P2608L minus 23644000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 10872 rs1063573 NEB 4703 2 152176218 NM_004543 NP_004534 C/G Q6326E minus 1550995 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 2q22 nebulin 10873 rs1063582 LOXL2 4017 8 23223298 NM_002318 NP_002309 A/C M570L minus 19764713 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 8p21.3-p21.2 lysyl oxidase-like 2 10874 rs1063582 LOXL2 4017 8 23223298 NM_002318 NP_002309 A/C M570L minus 23498008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 8p21.3-p21.2 lysyl oxidase-like 2 10875 rs1063582 LOXL2 4017 8 23223298 NM_002318 NP_002309 A/C M570L minus 23498008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 8p21.3-p21.2 lysyl oxidase-like 2 10876 rs1063582 LOXL2 4017 8 23223298 NM_002318 NP_002309 A/C M570L minus 23498008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 8p21.3-p21.2 lysyl oxidase-like 2 10877 rs1063646 PSORS1C1 170679 6 31215627 NM_014068 NP_054787 C/T P133L plus 23317685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 10878 rs1063646 PSORS1C1 170679 6 31215627 NM_014068 NP_054787 C/T P133L plus 23317685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 10879 rs1063646 PSORS1C1 170679 6 31215627 NM_014068 NP_054787 C/T P133L plus 23317685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 10880 rs1063646 PSORS1C1 170679 6 31215627 NM_014068 NP_054787 C/T P133L plus 24786961 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 10881 rs1063646 PSORS1C1 170679 6 31215627 NM_014068 NP_054787 C/T P133L plus 24796258 1303 SEQUENOM CEPH CEPH (92) 184 0.17 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 10882 rs1063731 FNDC3 22862 13 48663462 NM_014923 NP_055738 A/G S659G plus 1551352 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 HapMap 13q14.12 fibronectin type III domain containing 3 10883 rs1063739 GPT 2875 8 145700535 NM_005309 NP_005300 A/C H14N plus 2747868 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by doubleHit,freq,cluster" 8q24.3 glutamic-pyruvate transaminase (alanine aminotransferase) 10884 rs1063743 TACC3 10460 4 1697219 NM_006342 NP_006333 A/G G287S plus 1551392 1303 SEQUENOM CEPH CEPH (92) 92 0.2 106 by freq 4p16.3 "transforming, acidic coiled-coil containing protein 3" 10885 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 2401695 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10886 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 2401695 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10887 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 3172987 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10888 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 23713949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10889 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 23713949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10890 rs1063856 VWF 7450 12 6023795 NM_000552 NP_000543 A/G T789A minus 23713949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 10891 rs1063900 SBF1 6305 22 49191231 NM_002972 NP_002963 A/G W676X minus 1551666 1303 SEQUENOM CEPH CEPH (92) 92 0.04 86 by freq 22q13.33 SET binding factor 1 10892 rs1063926 MYH8 4626 17 10243665 NM_002472 NP_002463 A/G E1261G minus 1551716 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 by freq 17p13.1 "myosin, heavy polypeptide 8, skeletal muscle, perinatal" 10893 rs1063926 MYH8 4626 17 10243665 NM_002472 NP_002463 A/G E1261G minus 24796519 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 by freq 17p13.1 "myosin, heavy polypeptide 8, skeletal muscle, perinatal" 10894 rs1063955 NR1I2 8856 3 121008821 NM_003889 NP_003880 A/G A12T plus 1551779 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 10895 rs1063955 NR1I2 8856 3 121008821 NM_022002 NP_071285 A/G A51T plus 1551779 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 10896 rs1063955 NR1I2 8856 3 121008821 NM_033013 NP_148934 A/G A12T plus 1551779 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 10897 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 2596904 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10898 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 2596904 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10899 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 2990949 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10900 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 23650720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10901 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 23650720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10902 rs1064017 TCL1B 9623 14 95226940 NM_004918 NP_004909 A/G G93R plus 23650720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10903 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 2596904 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10904 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 2596904 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10905 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 2990949 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10906 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 23650720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10907 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 23650720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10908 rs1064017 TCL1B 9623 14 95226940 NM_199206 NP_954676 A/G G93R plus 23650720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 1B 10909 rs1064074 USH1C 10083 11 17476318 NM_153676 NP_710142 C/G E819D minus 10665480 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 11p15.1-p14 "Usher syndrome 1C (autosomal recessive, severe)" 10910 rs1064074 USH1C 10083 11 17476318 NM_153676 NP_710142 C/G E819D minus 23639433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11p15.1-p14 "Usher syndrome 1C (autosomal recessive, severe)" 10911 rs1064074 USH1C 10083 11 17476318 NM_153676 NP_710142 C/G E819D minus 23639433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11p15.1-p14 "Usher syndrome 1C (autosomal recessive, severe)" 10912 rs1064074 USH1C 10083 11 17476318 NM_153676 NP_710142 C/G E819D minus 23639433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11p15.1-p14 "Usher syndrome 1C (autosomal recessive, severe)" 10913 rs1064116 STAT3 6774 17 37728870 NM_003150 NP_003141 A/T F561Y minus 1552125 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10914 rs1064116 STAT3 6774 17 37728870 NM_003150 NP_003141 A/T F561Y minus 1552125 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10915 rs1064116 STAT3 6774 17 37728870 NM_003150 NP_003141 A/T F561Y minus 1552125 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10916 rs1064116 STAT3 6774 17 37728870 NM_003150 NP_003141 A/T F561Y minus 1552125 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10917 rs1064116 STAT3 6774 17 37728870 NM_139276 NP_644805 A/T F561Y minus 1552125 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10918 rs1064116 STAT3 6774 17 37728870 NM_139276 NP_644805 A/T F561Y minus 1552125 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10919 rs1064116 STAT3 6774 17 37728870 NM_139276 NP_644805 A/T F561Y minus 1552125 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10920 rs1064116 STAT3 6774 17 37728870 NM_139276 NP_644805 A/T F561Y minus 1552125 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10921 rs1064116 STAT3 6774 17 37728870 NM_213662 NP_998827 A/T F561Y minus 1552125 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10922 rs1064116 STAT3 6774 17 37728870 NM_213662 NP_998827 A/T F561Y minus 1552125 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10923 rs1064116 STAT3 6774 17 37728870 NM_213662 NP_998827 A/T F561Y minus 1552125 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10924 rs1064116 STAT3 6774 17 37728870 NM_213662 NP_998827 A/T F561Y minus 1552125 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 17q21.31 signal transducer and activator of transcription 3 (acute-phase response factor) 10925 rs1064204 SETBP1 26040 18 40786691 NM_015559 NP_056374 A/C P1076T plus 4930834 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 123 "by cluster,freq" 18q21.1 SET binding protein 1 10926 rs1064204 SETBP1 26040 18 40786691 NM_015559 NP_056374 A/C P1076T plus 4930834 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 18q21.1 SET binding protein 1 10927 rs1064204 SETBP1 26040 18 40786691 NM_015559 NP_056374 A/C P1076T plus 24044424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 18q21.1 SET binding protein 1 10928 rs1064204 SETBP1 26040 18 40786691 NM_015559 NP_056374 A/C P1076T plus 24044424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 18q21.1 SET binding protein 1 10929 rs1064204 SETBP1 26040 18 40786691 NM_015559 NP_056374 A/C P1076T plus 24044424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 18q21.1 SET binding protein 1 10930 rs1064210 MLL2 8085 12 47732307 NM_003482 NP_003473 A/G A476T minus 1552377 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 by freq 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 10931 rs1064213 PLCL1 5334 2 198775746 NM_006226 NP_006217 A/G V569I plus 3172782 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.44 123 "by submitter,freq,cluster" 2q33 phospholipase C-like 1 10932 rs1064213 PLCL1 5334 2 198775746 NM_006226 NP_006217 A/G V569I plus 4918221 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.27 123 "by submitter,freq,cluster" 2q33 phospholipase C-like 1 10933 rs1064213 PLCL1 5334 2 198775746 NM_006226 NP_006217 A/G V569I plus 24299030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq,cluster" 2q33 phospholipase C-like 1 10934 rs1064213 PLCL1 5334 2 198775746 NM_006226 NP_006217 A/G V569I plus 24299030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by submitter,freq,cluster" 2q33 phospholipase C-like 1 10935 rs1064213 PLCL1 5334 2 198775746 NM_006226 NP_006217 A/G V569I plus 24299030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by submitter,freq,cluster" 2q33 phospholipase C-like 1 10936 rs1064372 RBPSUH 3516 4 26106695 NM_005349 NP_005340 A/G K291E plus 1552824 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10937 rs1064372 RBPSUH 3516 4 26106695 NM_015874 NP_056958 A/G K278E plus 1552824 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10938 rs1064372 RBPSUH 3516 4 26106695 NM_203283 NP_976028 A/G K276E plus 1552824 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10939 rs1064372 RBPSUH 3516 4 26106695 NM_203284 NP_976029 A/G K277E plus 1552824 1303 SEQUENOM CEPH CEPH (92) 92 0.09 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10940 rs1064376 RBPSUH 3516 4 26107861 NM_005349 NP_005340 C/G D334H plus 24796212 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10941 rs1064376 RBPSUH 3516 4 26107861 NM_015874 NP_056958 C/G D321H plus 24796212 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10942 rs1064376 RBPSUH 3516 4 26107861 NM_203283 NP_976028 C/G D319H plus 24796212 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10943 rs1064376 RBPSUH 3516 4 26107861 NM_203284 NP_976029 C/G D320H plus 24796212 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10944 rs1064384 RBPSUH 3516 4 26108651 NM_005349 NP_005340 A/G R419Q plus 1552842 1303 SEQUENOM CEPH CEPH (92) 92 0.41 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10945 rs1064384 RBPSUH 3516 4 26108651 NM_015874 NP_056958 A/G R406Q plus 1552842 1303 SEQUENOM CEPH CEPH (92) 92 0.41 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10946 rs1064384 RBPSUH 3516 4 26108651 NM_203283 NP_976028 A/G R404Q plus 1552842 1303 SEQUENOM CEPH CEPH (92) 92 0.41 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10947 rs1064384 RBPSUH 3516 4 26108651 NM_203284 NP_976029 A/G R405Q plus 1552842 1303 SEQUENOM CEPH CEPH (92) 92 0.41 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10948 rs1064387 RBPSUH 3516 4 26108668 NM_005349 NP_005340 C/T P425S plus 24796210 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10949 rs1064387 RBPSUH 3516 4 26108668 NM_015874 NP_056958 C/T P412S plus 24796210 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10950 rs1064387 RBPSUH 3516 4 26108668 NM_203283 NP_976028 C/T P410S plus 24796210 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10951 rs1064387 RBPSUH 3516 4 26108668 NM_203284 NP_976029 C/T P411S plus 24796210 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10952 rs1064402 RBPSUH 3516 4 26108762 NM_005349 NP_005340 C/T A456V plus 1552866 1303 SEQUENOM CEPH CEPH (92) 92 0.23 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10953 rs1064402 RBPSUH 3516 4 26108762 NM_015874 NP_056958 C/T A443V plus 1552866 1303 SEQUENOM CEPH CEPH (92) 92 0.23 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10954 rs1064402 RBPSUH 3516 4 26108762 NM_203283 NP_976028 C/T A441V plus 1552866 1303 SEQUENOM CEPH CEPH (92) 92 0.23 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10955 rs1064402 RBPSUH 3516 4 26108762 NM_203284 NP_976029 C/T A442V plus 1552866 1303 SEQUENOM CEPH CEPH (92) 92 0.23 86 by freq 4p15.2 recombining binding protein suppressor of hairless (Drosophila) 10956 rs1064422 IGLL1 3543 22 22240224 NM_020070 NP_064455 A/G P142L plus 24797278 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 by freq 22q11.23 immunoglobulin lambda-like polypeptide 1 10957 rs1064425 IGLL1 3543 22 22240290 NM_020070 NP_064455 A/G P120L plus 24797281 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 by freq 22q11.23 immunoglobulin lambda-like polypeptide 1 10958 rs1064493 ILF3 3609 19 10642794 NM_004516 NP_004507 C/G D50H plus 1553087 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 by freq 19p13.2 "interleukin enhancer binding factor 3, 90kDa" 10959 rs1064493 ILF3 3609 19 10642794 NM_012218 NP_036350 C/G D50H plus 1553087 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 by freq 19p13.2 "interleukin enhancer binding factor 3, 90kDa" 10960 rs1064493 ILF3 3609 19 10642794 NM_153464 NP_703194 C/G D50H plus 1553087 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 by freq 19p13.2 "interleukin enhancer binding factor 3, 90kDa" 10961 rs1064524 ITGAL 3683 16 30400324 NM_002209 NP_002200 C/T R214W plus 16360704 649 FHCRC POPU1 USA (20) 3 0.03 120 by freq 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 10962 rs1064524 ITGAL 3683 16 30400324 NM_002209 NP_002200 C/T R214W plus 16360704 649 FHCRC POPU1 USA (20) 39 0.05 120 by freq 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 10963 rs1064524 ITGAL 3683 16 30400324 NM_002209 NP_002200 C/T R214W plus 16360704 1303 SEQUENOM CEPH CEPH (92) 92 0.09 120 by freq 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 10964 rs1064567 BRDT 676 1 92155783 NM_001726 NP_001717 A/C K336T plus 1553262 1303 SEQUENOM CEPH CEPH (92) 92 0.35 86 by freq 1p22.1 "bromodomain, testis-specific" 10965 rs1064567 BRDT 676 1 92155783 NM_207189 NP_997072 A/C K336T plus 1553262 1303 SEQUENOM CEPH CEPH (92) 92 0.35 86 by freq 1p22.1 "bromodomain, testis-specific" 10966 rs1064608 MTCH2 23788 11 47597005 NM_014342 NP_055157 C/G P290A minus 20776665 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 121 "HapMap,freq,cluster" 11p11.2 mitochondrial carrier homolog 2 (C. elegans) 10967 rs1064608 MTCH2 23788 11 47597005 NM_014342 NP_055157 C/G P290A minus 20776665 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,freq,cluster" 11p11.2 mitochondrial carrier homolog 2 (C. elegans) 10968 rs1064911 MLL 4297 11 117848750 NM_005933 NP_005924 C/G Q556E plus 4380505 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 10969 rs1064911 MLL 4297 11 117848750 NM_005933 NP_005924 C/G Q556E plus 4380505 1303 SEQUENOM CEPH CEPH (92) 92 1 106 HapMap 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 10970 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 3213295 738 YUSUKE JBIC-ALLELE Japanese (752) 1108 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10971 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 3426314 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10972 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 3426314 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10973 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 23671149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10974 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 23671149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10975 rs1065177 Rif1 55183 2 152156926 NM_018151 NP_060621 C/G L2418V plus 23671149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 10976 rs1065205 SERPINB3 6317 18 59473975 NM_006919 NP_008850 A/G T357A minus 6833963 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 111 "HapMap,submitter,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3" 10977 rs1065205 SERPINB3 6317 18 59473975 NM_006919 NP_008850 A/G T357A minus 6833963 1303 SEQUENOM CEPH CEPH (92) 92 0.09 111 "HapMap,submitter,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3" 10978 rs1065381 SMC6L1 79677 2 17806123 NM_024624 NP_078900 A/G A691T minus 23691672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 2p24.3 SMC6 structural maintenance of chromosomes 6-like 1 (yeast) 10979 rs1065381 SMC6L1 79677 2 17806123 NM_024624 NP_078900 A/G A691T minus 23691672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 2p24.3 SMC6 structural maintenance of chromosomes 6-like 1 (yeast) 10980 rs1065381 SMC6L1 79677 2 17806123 NM_024624 NP_078900 A/G A691T minus 23691672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 2p24.3 SMC6 structural maintenance of chromosomes 6-like 1 (yeast) 10981 rs1065457 CD1E 913 1 155137498 NM_030893 NP_112155 A/G Q96R plus 3267040 1303 SEQUENOM CEPH CEPH (92) 92 0.42 119 "by doubleHit,submitter,freq" 1q22-q23 "CD1E antigen, e polypeptide" 10982 rs1065489 HF1 3075 1 193441431 NM_000186 NP_000177 G/T E936D plus 3241400 738 YUSUKE JBIC-ALLELE Japanese (752) 1252 0.46 123 "by cluster,freq" 1q32 H factor 1 (complement) 10983 rs1065508 PSG6 5675 19 48106737 NM_002782 NP_002773 A/C L181M minus 1556034 1303 SEQUENOM CEPH CEPH (92) 92 0.34 86 by freq 19q13.2 pregnancy specific beta-1-glycoprotein 6 10984 rs1065674 NUP133 55746 1 225930073 NM_018230 NP_060700 A/G Q406R minus 6809927 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,submitter,freq,cluster" 1q42.13 nucleoporin 133kDa 10985 rs1065674 NUP133 55746 1 225930073 NM_018230 NP_060700 A/G Q406R minus 23228588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 1q42.13 nucleoporin 133kDa 10986 rs1065674 NUP133 55746 1 225930073 NM_018230 NP_060700 A/G Q406R minus 23228588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 1q42.13 nucleoporin 133kDa 10987 rs1065674 NUP133 55746 1 225930073 NM_018230 NP_060700 A/G Q406R minus 23228588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 1q42.13 nucleoporin 133kDa 10988 rs1065730 TUBA3 7846 12 47865077 NM_006009 NP_006000 A/G E447K minus 1556722 1303 SEQUENOM CEPH CEPH (92) 92 0.05 106 by freq 12q12-12q14.3 "tubulin, alpha 3" 10989 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 1556787 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10990 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10991 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10992 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10993 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10994 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10995 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10996 rs1065751 RECQL 5965 12 21534490 NM_002907 NP_002898 A/G V102I minus 6903930 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10997 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 1556787 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 38 0.1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10998 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 10999 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11000 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11001 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11002 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11003 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11004 rs1065751 RECQL 5965 12 21534490 NM_032941 NP_116559 A/G V102I minus 6903930 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12p12 RecQ protein-like (DNA helicase Q1-like) 11005 rs1065761 CHIT1 1118 1 199917750 NM_003465 NP_003456 C/G A442G minus 1556811 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 46 0.1 86 "by doubleHit,freq" 1q31-q32 chitinase 1 (chitotriosidase) 11006 rs1065761 CHIT1 1118 1 199917750 NM_003465 NP_003456 C/G A442G minus 1556811 1303 SEQUENOM CEPH CEPH (92) 92 0.33 86 "by doubleHit,freq" 1q31-q32 chitinase 1 (chitotriosidase) 11007 rs1065775 PTPRF 5792 1 43726021 NM_002840 NP_002831 C/T A402V plus 1556865 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 60 0.03 86 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 11008 rs1065775 PTPRF 5792 1 43726021 NM_002840 NP_002831 C/T A402V plus 1556865 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 11009 rs1065775 PTPRF 5792 1 43726021 NM_130440 NP_569707 C/T A402V plus 1556865 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 60 0.03 86 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 11010 rs1065775 PTPRF 5792 1 43726021 NM_130440 NP_569707 C/T A402V plus 1556865 1303 SEQUENOM CEPH CEPH (92) 92 1 86 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 11011 rs1065782 IGFBP1 3484 7 45704798 NM_000596 NP_000587 A/G V183I plus 13452532 693 EGP_SNPS PDR90 NIHPDR 170 0.01 120 "HapMap,cluster" 7p13-p12 insulin-like growth factor binding protein 1 11012 rs1065782 IGFBP1 3484 7 45704798 NM_000596 NP_000587 A/G V183I plus 13452532 885 TSC-CSHL HapMap-CEPH-30-trios 96 1 120 "HapMap,cluster" 7p13-p12 insulin-like growth factor binding protein 1 11013 rs1065782 IGFBP1 3484 7 45704798 NM_000596 NP_000587 A/G V183I plus 13452532 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,cluster" 7p13-p12 insulin-like growth factor binding protein 1 11014 rs1071600 MYOM1 8736 18 3116811 NM_003803 NP_003794 C/T I960T minus 1556798 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 32 0.33 120 "by cluster,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 11015 rs1071682 CLST11240 51751 17 40283247 NM_016438 NP_057522 C/T S86N minus 14280554 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 by freq 17q21.31 CLST 11240 protein 11016 rs1071682 CLST11240 51751 17 40283247 NM_016438 NP_057522 C/T S86N minus 24569186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 17q21.31 CLST 11240 protein 11017 rs1071682 CLST11240 51751 17 40283247 NM_016438 NP_057522 C/T S86N minus 24569186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 17q21.31 CLST 11240 protein 11018 rs1071682 CLST11240 51751 17 40283247 NM_016438 NP_057522 C/T S86N minus 24569186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 17q21.31 CLST 11240 protein 11019 rs1073123 TSC1 7248 9 132816458 NM_000368 NP_000359 A/G M322T plus 7904139 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq" 9q34 tuberous sclerosis 1 11020 rs1073123 TSC1 7248 9 132816458 NM_000368 NP_000359 A/G M322T plus 7904139 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,submitter,freq" 9q34 tuberous sclerosis 1 11021 rs1073123 TSC1 7248 9 132816458 NM_000368 NP_000359 A/G M322T plus 23677213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,submitter,freq" 9q34 tuberous sclerosis 1 11022 rs1073123 TSC1 7248 9 132816458 NM_000368 NP_000359 A/G M322T plus 23677213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,submitter,freq" 9q34 tuberous sclerosis 1 11023 rs1073123 TSC1 7248 9 132816458 NM_000368 NP_000359 A/G M322T plus 23677213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq" 9q34 tuberous sclerosis 1 11024 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 91101 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11025 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 91101 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11026 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 91101 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11027 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 24236499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11028 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 24236499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11029 rs1076669 ECE1 1889 1 21319161 NM_001397 NP_001388 C/T T341I minus 24236499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p36.1 endothelin converting enzyme 1 11030 rs1076827 VARS2 7407 6 31855812 NM_006295 NP_006286 A/G P1008L plus 23325172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.3 valyl-tRNA synthetase 2 11031 rs1076827 VARS2 7407 6 31855812 NM_006295 NP_006286 A/G P1008L plus 23325172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 6p21.3 valyl-tRNA synthetase 2 11032 rs1076827 VARS2 7407 6 31855812 NM_006295 NP_006286 A/G P1008L plus 23325172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 6p21.3 valyl-tRNA synthetase 2 11033 rs1077019 BIRC7 79444 20 61341172 NM_139317 NP_647478 C/G E223Q minus 3208978 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.33 123 by freq 20q13.3 baculoviral IAP repeat-containing 7 (livin) 11034 rs1077126 OR52B6 340980 11 5558851 XM_291806 XP_291806 A/G T57A plus 23560342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 11035 rs1077126 OR52B6 340980 11 5558851 XM_291806 XP_291806 A/G T57A plus 23560342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 11036 rs1077126 OR52B6 340980 11 5558851 XM_291806 XP_291806 A/G T57A plus 23560342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 11037 rs1077841 MYH1 4619 17 10340015 NM_005963 NP_005954 C/T R1716C minus 7849981 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 17p13.1 "myosin, heavy polypeptide 1, skeletal muscle, adult" 11038 rs1077841 MYH1 4619 17 10340015 NM_005963 NP_005954 C/T R1716C minus 7849981 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 HapMap 17p13.1 "myosin, heavy polypeptide 1, skeletal muscle, adult" 11039 rs1077920 OACT1 154141 6 20320945 XM_371801 XP_371801 A/C G151W plus 24797490 1303 SEQUENOM CEPH CEPH (92) 184 0.17 123 by freq 6p22.3 O-acyltransferase (membrane bound) domain containing 1 11040 rs1078461 HELT 391723 4 186316101 XM_373043 XP_373043 C/G L147V plus 24178421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 4q35.1 likely ortholog of mouse Hey-like transcriptional repressor 11041 rs1078461 HELT 391723 4 186316101 XM_373043 XP_373043 C/G L147V plus 24178421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 4q35.1 likely ortholog of mouse Hey-like transcriptional repressor 11042 rs1078461 HELT 391723 4 186316101 XM_373043 XP_373043 C/G L147V plus 24178421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 by freq 4q35.1 likely ortholog of mouse Hey-like transcriptional repressor 11043 rs1078543 PINX1 54984 8 10660548 NM_017884 NP_060354 A/T S254C plus 3217974 738 YUSUKE JBIC-ALLELE Japanese (752) 1266 0.11 123 by freq 8p23 PIN2-interacting protein 1 11044 rs1078543 PINX1 54984 8 10660548 NM_017884 NP_060354 A/T S254C plus 6687319 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 by freq 8p23 PIN2-interacting protein 1 11045 rs1078543 PINX1 54984 8 10660548 NM_017884 NP_060354 A/T S254C plus 23368365 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 8p23 PIN2-interacting protein 1 11046 rs1078543 PINX1 54984 8 10660548 NM_017884 NP_060354 A/T S254C plus 23368365 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 8p23 PIN2-interacting protein 1 11047 rs1078543 PINX1 54984 8 10660548 NM_017884 NP_060354 A/T S254C plus 23368365 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 8p23 PIN2-interacting protein 1 11048 rs1079109 HSPA6 3310 1 158308095 NM_002155 NP_002146 C/T L198F plus 23841713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 11049 rs1079109 HSPA6 3310 1 158308095 NM_002155 NP_002146 C/T L198F plus 23841713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 11050 rs1079109 HSPA6 3310 1 158308095 NM_002155 NP_002146 C/T L198F plus 23841713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by cluster,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 11051 rs1079109 HSPA6 3310 1 158308095 NM_002155 NP_002146 C/T L198F plus 24797506 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by cluster,freq" 1q23 heat shock 70kDa protein 6 (HSP70B') 11052 rs1079610 OPN4 94233 10 88412096 NM_033282 NP_150598 C/T T394I plus 3776437 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,freq,cluster" 10q22 opsin 4 (melanopsin) 11053 rs1079610 OPN4 94233 10 88412096 NM_033282 NP_150598 C/T T394I plus 4926339 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.2 121 "by doubleHit,freq,cluster" 10q22 opsin 4 (melanopsin) 11054 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 3250805 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11055 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 11741234 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11056 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 11741234 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11057 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 24686687 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11058 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 24686687 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11059 rs1105168 FAT2 2196 5 150867075 NM_001447 NP_001438 A/G P4117L plus 24686687 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 11060 rs1105222 CRB2 286204 9 123207807 NM_173689 NP_775960 C/G G159A minus 1291543 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 "by doubleHit,freq,cluster" 9q34.11 crumbs homolog 2 (Drosophila) 11061 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 1292145 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.11 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11062 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 1292145 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.24 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11063 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 1292145 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.04 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11064 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 24707133 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11065 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 24707133 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11066 rs1105353 SDK2 54549 17 68938251 NM_019064 NP_061937 G/T T150N plus 24707133 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 17q25.1-q25.2 sidekick homolog 2 (chicken) 11067 rs1105879 UGT1A6 54578 2 234384202 NM_001072 NP_001063 G/T R184S minus 7863109 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 11068 rs1105879 UGT1A6 54578 2 234384202 NM_001072 NP_001063 G/T R184S minus 7863109 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 11069 rs1105879 UGT1A6 54578 2 234384202 NM_001072 NP_001063 G/T R184S minus 24281292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 11070 rs1105879 UGT1A6 54578 2 234384202 NM_001072 NP_001063 G/T R184S minus 24281292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 11071 rs1105879 UGT1A6 54578 2 234384202 NM_001072 NP_001063 G/T R184S minus 24281292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 11072 rs1106042 PIWIL1 9271 12 129366518 NM_004764 NP_004755 A/G R527K plus 1294401 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.03 123 by freq 12q24.33 piwi-like 1 (Drosophila) 11073 rs1106042 PIWIL1 9271 12 129366518 NM_004764 NP_004755 A/G R527K plus 3198653 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.15 123 by freq 12q24.33 piwi-like 1 (Drosophila) 11074 rs1107413 SRPRB 58477 3 135007415 NM_021203 NP_067026 C/G V9L minus 1300186 1303 SEQUENOM CEPH CEPH (92) 92 0.3 120 "by doubleHit,freq,cluster" 3q22.1 "signal recognition particle receptor, B subunit" 11075 rs1109643 GORASP1 64689 3 39114780 NM_031899 NP_114105 C/T T425M minus 1308933 638 TSC-CSHL TSC_42_AA TSC African American (42) 76 0.04 113 by freq 3p22-p21.33 "golgi reassembly stacking protein 1, 65kDa" 11076 rs1109643 GORASP1 64689 3 39114780 NM_031899 NP_114105 C/T T425M minus 1308933 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.01 113 by freq 3p22-p21.33 "golgi reassembly stacking protein 1, 65kDa" 11077 rs1109643 GORASP1 64689 3 39114780 NM_031899 NP_114105 C/T T425M minus 1308933 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.14 113 by freq 3p22-p21.33 "golgi reassembly stacking protein 1, 65kDa" 11078 rs1109643 GORASP1 64689 3 39114780 NM_031899 NP_114105 C/T T425M minus 1308933 1303 SEQUENOM CEPH CEPH (92) 92 1 113 by freq 3p22-p21.33 "golgi reassembly stacking protein 1, 65kDa" 11079 rs1110061 NR5A1 2516 9 124342356 NM_004959 NP_004950 C/G G146A plus 7867081 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 by freq 9q33 "nuclear receptor subfamily 5, group A, member 1" 11080 rs1110627 DLL3 10683 19 44686551 NM_016941 NP_058637 A/G L218P minus 3251050 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.49 121 "by doubleHit,freq,cluster" 19q13 delta-like 3 (Drosophila) 11081 rs1110627 DLL3 10683 19 44686551 NM_016941 NP_058637 A/G L218P minus 20071430 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 19q13 delta-like 3 (Drosophila) 11082 rs1110627 DLL3 10683 19 44686551 NM_203486 NP_982353 A/G L218P minus 3251050 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.49 121 "by doubleHit,freq,cluster" 19q13 delta-like 3 (Drosophila) 11083 rs1110627 DLL3 10683 19 44686551 NM_203486 NP_982353 A/G L218P minus 20071430 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by doubleHit,freq,cluster" 19q13 delta-like 3 (Drosophila) 11084 rs1110719 ESPL1 9700 12 51968150 NM_012291 NP_036423 A/T K1435M plus 1328844 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11085 rs1110719 ESPL1 9700 12 51968150 NM_012291 NP_036423 A/T K1435M plus 23365474 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11086 rs1110719 ESPL1 9700 12 51968150 NM_012291 NP_036423 A/T K1435M plus 23365474 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11087 rs1110719 ESPL1 9700 12 51968150 NM_012291 NP_036423 A/T K1435M plus 23365474 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11088 rs1111168 KRTHA2 3882 17 36876651 NM_002278 NP_002269 C/G E151D minus 1351534 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 1 100 by freq 17q12-q21 "keratin, hair, acidic, 2" 11089 rs1111168 KRTHA2 3882 17 36876651 NM_002278 NP_002269 C/G E151D minus 1351534 1303 SEQUENOM CEPH CEPH (92) 92 1 100 by freq 17q12-q21 "keratin, hair, acidic, 2" 11090 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 901 AFFY AfAm 40 0.48 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11091 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 902 AFFY Caucasian 40 0.28 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11092 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 903 AFFY Asian 40 0.2 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11093 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 904 AFFY CEPH 44 0.25 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11094 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 905 AFFY PDpanel 48 0.33 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11095 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 1394483 906 AFFY APE 4 1 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11096 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 23237940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11097 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 23237940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11098 rs1112438 STI2 199223 3 39127349 NM_145755 NP_665698 C/T R91Q minus 23237940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq" 3p21.33 TPR domain containing STI2 11099 rs1116221 TRIM31 11074 6 30179309 NM_007028 NP_008959 A/G E421K minus 7865759 1303 SEQUENOM CEPH CEPH (92) 92 0.17 119 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 11100 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 638 TSC-CSHL TSC_42_AA TSC African American (42) 74 0.2 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11101 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 72 0.07 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11102 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.07 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11103 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.2 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11104 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.02 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11105 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 1457672 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 58 0.12 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11106 rs1122206 RDH8 50700 19 9990552 NM_015725 NP_056540 C/G H136Q plus 3181271 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 by freq 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 11107 rs1122326 HSPB9 94086 17 37528399 NM_033194 NP_149971 A/C Q2P plus 1458011 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "HapMap,freq" 17q21.31 "heat shock protein, alpha-crystallin-related, B9" 11108 rs1122326 HSPB9 94086 17 37528399 NM_033194 NP_149971 A/C Q2P plus 3225836 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.17 123 "HapMap,freq" 17q21.31 "heat shock protein, alpha-crystallin-related, B9" 11109 rs1122326 HSPB9 94086 17 37528399 NM_033194 NP_149971 A/C Q2P plus 10855520 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq" 17q21.31 "heat shock protein, alpha-crystallin-related, B9" 11110 rs1122326 HSPB9 94086 17 37528399 NM_033194 NP_149971 A/C Q2P plus 10855520 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,freq" 17q21.31 "heat shock protein, alpha-crystallin-related, B9" 11111 rs1122444 UAP1L1 91373 9 137250370 NM_207309 NP_997192 C/T P250S plus 5707179 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 by freq 9q34.3 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 11112 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.18 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11113 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.31 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11114 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.05 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11115 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 1 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11116 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.11 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11117 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 1460347 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.08 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11118 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 3176390 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.14 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11119 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 16803662 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11120 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 24689526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11121 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 24689526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11122 rs1122955 ZNF132 7691 19 63638015 NM_003433 NP_003424 A/G G203D minus 24689526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19q13.4 zinc finger protein 132 (clone pHZ-12) 11123 rs1123617 SLC14A2 8170 18 41506881 NM_007163 NP_009094 C/T V750I minus 1462583 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 11124 rs1123617 SLC14A2 8170 18 41506881 NM_007163 NP_009094 C/T V750I minus 1462583 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "HapMap,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 11125 rs1123617 SLC14A2 8170 18 41506881 NM_007163 NP_009094 C/T V750I minus 1462583 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.13 123 "HapMap,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 11126 rs1123617 SLC14A2 8170 18 41506881 NM_007163 NP_009094 C/T V750I minus 1462583 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.13 123 "HapMap,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 11127 rs1123617 SLC14A2 8170 18 41506881 NM_007163 NP_009094 C/T V750I minus 3212770 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 11128 rs1124164 KLRA1 10748 12 10640842 NM_006611 NP_006602 A/G S41P plus 23787562 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 11129 rs1124164 KLRA1 10748 12 10640842 NM_006611 NP_006602 A/G S41P plus 23787562 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by submitter,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 11130 rs1124164 KLRA1 10748 12 10640842 NM_006611 NP_006602 A/G S41P plus 23787562 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 11131 rs1125488 IFNT1 338376 9 21471556 NM_176891 NP_795372 A/C Q46H minus 1479442 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq" 9p21.3 interferon tau-1 11132 rs1125488 IFNT1 338376 9 21471556 NM_176891 NP_795372 A/C Q46H minus 24296953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,submitter,freq" 9p21.3 interferon tau-1 11133 rs1125488 IFNT1 338376 9 21471556 NM_176891 NP_795372 A/C Q46H minus 24296953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 9p21.3 interferon tau-1 11134 rs1125488 IFNT1 338376 9 21471556 NM_176891 NP_795372 A/C Q46H minus 24296953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 1 123 "HapMap,submitter,freq" 9p21.3 interferon tau-1 11135 rs1126454 CEACAM4 1089 19 46824154 NM_001817 NP_001808 C/G H29D minus 5001793 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.13 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 11136 rs1126454 CEACAM4 1089 19 46824154 NM_001817 NP_001808 C/G H29D minus 24427846 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.42 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 11137 rs1126454 CEACAM4 1089 19 46824154 NM_001817 NP_001808 C/G H29D minus 24427846 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.35 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 11138 rs1126454 CEACAM4 1089 19 46824154 NM_001817 NP_001808 C/G H29D minus 24427846 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.06 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 11139 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.34 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11140 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 901 AFFY AfAm 12 0.17 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11141 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 902 AFFY Caucasian 22 0.09 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11142 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 903 AFFY Asian 10 1 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11143 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 904 AFFY CEPH 12 1 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11144 rs1126483 ENPEP 2028 4 111767309 NM_001977 NP_001968 C/T V218A plus 3206805 905 AFFY PDpanel 44 0.09 121 "by doubleHit,submitter,freq,cluster" 4q25 glutamyl aminopeptidase (aminopeptidase A) 11145 rs1126497 TACSTD1 4072 2 47512757 NM_002354 NP_002345 C/T M115T plus 1508999 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 120 "HapMap,doubleHit,submitter,freq,cluster" 2p21 tumor-associated calcium signal transducer 1 11146 rs1126497 TACSTD1 4072 2 47512757 NM_002354 NP_002345 C/T M115T plus 14496587 1303 SEQUENOM CEPH CEPH (92) 92 0.43 120 "HapMap,doubleHit,submitter,freq,cluster" 2p21 tumor-associated calcium signal transducer 1 11147 rs1126501 CSDA 8531 12 10766755 NM_003651 NP_003642 A/G T75A minus 12203803 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 12p13.1 cold shock domain protein A 11148 rs1126617 GPLD1 2822 6 24597631 NM_001503 NP_001494 A/G V30I minus 24334359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11149 rs1126617 GPLD1 2822 6 24597631 NM_001503 NP_001494 A/G V30I minus 24334359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11150 rs1126617 GPLD1 2822 6 24597631 NM_001503 NP_001494 A/G V30I minus 24334359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11151 rs1126617 GPLD1 2822 6 24597631 NM_177483 NP_803436 A/G V30I minus 24334359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11152 rs1126617 GPLD1 2822 6 24597631 NM_177483 NP_803436 A/G V30I minus 24334359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11153 rs1126617 GPLD1 2822 6 24597631 NM_177483 NP_803436 A/G V30I minus 24334359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 11154 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 3255012 506 NCBI NIHPDR NIHPDR 80 0.48 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11155 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 6903645 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.37 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11156 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 6903645 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.45 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11157 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 6903645 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11158 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 6903645 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11159 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 6903645 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.44 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11160 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 16343714 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.32 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11161 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 16343714 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.39 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11162 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 24209169 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.31 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11163 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 24209169 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11164 rs1126667 ALOX12 239 17 6843484 NM_000697 NP_000688 A/G Q261R plus 24209169 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 17p13.1 arachidonate 12-lipoxygenase 11165 rs1126671 ADH4 127 4 100405592 NM_000670 NP_000661 A/G I309V minus 13402833 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 119 "HapMap,submitter,freq,cluster" 4q22 "alcohol dehydrogenase 4 (class II), pi polypeptide" 11166 rs1126671 ADH4 127 4 100405592 NM_000670 NP_000661 A/G I309V minus 13402833 1303 SEQUENOM CEPH CEPH (92) 92 0.43 119 "HapMap,submitter,freq,cluster" 4q22 "alcohol dehydrogenase 4 (class II), pi polypeptide" 11167 rs1126690 GAA 2548 17 75706000 NM_000152 NP_000143 A/G V780I plus 3176226 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.29 108 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 11168 rs1126690 GAA 2548 17 75706000 NM_000152 NP_000143 A/G V780I plus 3251847 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.29 108 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 11169 rs1126783 UGT1A8 54576 2 234308397 NM_019076 NP_061949 C/G S15C plus 1509913 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 11170 rs1126785 UGT1A8 54576 2 234308636 NM_019076 NP_061949 C/G D95H plus 1509919 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 11171 rs1126788 UGT1A8 54576 2 234308666 NM_019076 NP_061949 A/T L105M plus 1509922 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 11172 rs1126792 UGT1A8 54576 2 234308680 NM_019076 NP_061949 A/T F109L plus 1509926 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 11173 rs1126793 UGT1A8 54576 2 234308681 NM_019076 NP_061949 A/C L110M plus 1509927 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A8" 11174 rs1126799 TPO 7173 2 1499683 NM_000547 NP_000538 C/T V847A plus 3213305 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.41 123 "HapMap,freq" 2p25 thyroid peroxidase 11175 rs1126799 TPO 7173 2 1499683 NM_000547 NP_000538 C/T V847A plus 3213305 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,freq" 2p25 thyroid peroxidase 11176 rs1126799 TPO 7173 2 1499683 NM_000547 NP_000538 C/T V847A plus 24287206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 2p25 thyroid peroxidase 11177 rs1126799 TPO 7173 2 1499683 NM_000547 NP_000538 C/T V847A plus 24287206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq" 2p25 thyroid peroxidase 11178 rs1126799 TPO 7173 2 1499683 NM_000547 NP_000538 C/T V847A plus 24287206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,freq" 2p25 thyroid peroxidase 11179 rs1126799 TPO 7173 2 1499683 NM_175719 NP_783650 C/T V790A plus 3213305 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.41 123 "HapMap,freq" 2p25 thyroid peroxidase 11180 rs1126799 TPO 7173 2 1499683 NM_175719 NP_783650 C/T V790A plus 3213305 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,freq" 2p25 thyroid peroxidase 11181 rs1126799 TPO 7173 2 1499683 NM_175719 NP_783650 C/T V790A plus 24287206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 2p25 thyroid peroxidase 11182 rs1126799 TPO 7173 2 1499683 NM_175719 NP_783650 C/T V790A plus 24287206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq" 2p25 thyroid peroxidase 11183 rs1126799 TPO 7173 2 1499683 NM_175719 NP_783650 C/T V790A plus 24287206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,freq" 2p25 thyroid peroxidase 11184 rs1126799 TPO 7173 2 1499683 NM_175720 NP_783651 C/T V847A plus 3213305 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.41 123 "HapMap,freq" 2p25 thyroid peroxidase 11185 rs1126799 TPO 7173 2 1499683 NM_175720 NP_783651 C/T V847A plus 3213305 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,freq" 2p25 thyroid peroxidase 11186 rs1126799 TPO 7173 2 1499683 NM_175720 NP_783651 C/T V847A plus 24287206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 2p25 thyroid peroxidase 11187 rs1126799 TPO 7173 2 1499683 NM_175720 NP_783651 C/T V847A plus 24287206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq" 2p25 thyroid peroxidase 11188 rs1126799 TPO 7173 2 1499683 NM_175720 NP_783651 C/T V847A plus 24287206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,freq" 2p25 thyroid peroxidase 11189 rs1126799 TPO 7173 2 1499683 NM_175721 NP_783652 C/T V803A plus 3213305 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.41 123 "HapMap,freq" 2p25 thyroid peroxidase 11190 rs1126799 TPO 7173 2 1499683 NM_175721 NP_783652 C/T V803A plus 3213305 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,freq" 2p25 thyroid peroxidase 11191 rs1126799 TPO 7173 2 1499683 NM_175721 NP_783652 C/T V803A plus 24287206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 2p25 thyroid peroxidase 11192 rs1126799 TPO 7173 2 1499683 NM_175721 NP_783652 C/T V803A plus 24287206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq" 2p25 thyroid peroxidase 11193 rs1126799 TPO 7173 2 1499683 NM_175721 NP_783652 C/T V803A plus 24287206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,freq" 2p25 thyroid peroxidase 11194 rs1126799 TPO 7173 2 1499683 NM_175722 NP_783653 C/T V674A plus 3213305 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.41 123 "HapMap,freq" 2p25 thyroid peroxidase 11195 rs1126799 TPO 7173 2 1499683 NM_175722 NP_783653 C/T V674A plus 3213305 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,freq" 2p25 thyroid peroxidase 11196 rs1126799 TPO 7173 2 1499683 NM_175722 NP_783653 C/T V674A plus 24287206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,freq" 2p25 thyroid peroxidase 11197 rs1126799 TPO 7173 2 1499683 NM_175722 NP_783653 C/T V674A plus 24287206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq" 2p25 thyroid peroxidase 11198 rs1126799 TPO 7173 2 1499683 NM_175722 NP_783653 C/T V674A plus 24287206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,freq" 2p25 thyroid peroxidase 11199 rs1126933 CDH3 1001 16 67279034 NM_001793 NP_001784 C/G Q563H plus 14827740 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,submitter,freq,cluster" 16q22.1 "cadherin 3, type 1, P-cadherin (placental)" 11200 rs1126933 CDH3 1001 16 67279034 NM_001793 NP_001784 C/G Q563H plus 24681068 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 16q22.1 "cadherin 3, type 1, P-cadherin (placental)" 11201 rs1126933 CDH3 1001 16 67279034 NM_001793 NP_001784 C/G Q563H plus 24681068 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 16q22.1 "cadherin 3, type 1, P-cadherin (placental)" 11202 rs1126933 CDH3 1001 16 67279034 NM_001793 NP_001784 C/G Q563H plus 24681068 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 16q22.1 "cadherin 3, type 1, P-cadherin (placental)" 11203 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 4391113 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11204 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 16334859 901 AFFY AfAm 12 1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11205 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 16334859 902 AFFY Caucasian 24 0.08 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11206 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 16334859 903 AFFY Asian 12 0.17 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11207 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 16334859 904 AFFY CEPH 12 1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11208 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 16334859 905 AFFY PDpanel 46 0.11 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11209 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 24040325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11210 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 24040325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11211 rs1127354 ITPA 3704 20 3141842 NM_033453 NP_258412 A/C P32T plus 24040325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11212 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 4391113 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11213 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 16334859 901 AFFY AfAm 12 1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11214 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 16334859 902 AFFY Caucasian 24 0.08 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11215 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 16334859 903 AFFY Asian 12 0.17 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11216 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 16334859 904 AFFY CEPH 12 1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11217 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 16334859 905 AFFY PDpanel 46 0.11 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11218 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 24040325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11219 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 24040325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11220 rs1127354 ITPA 3704 20 3141842 NM_181493 NP_852470 A/C P15T plus 24040325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 20p inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 11221 rs1127732 PDCD6IP 10015 3 33880570 NM_013374 NP_037506 C/T S730L plus 1513249 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq,cluster" 3p22.3 programmed cell death 6 interacting protein 11222 rs1127732 PDCD6IP 10015 3 33880570 NM_013374 NP_037506 C/T S730L plus 17725013 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,submitter,freq,cluster" 3p22.3 programmed cell death 6 interacting protein 11223 rs1127732 PDCD6IP 10015 3 33880570 NM_013374 NP_037506 C/T S730L plus 24151828 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 3p22.3 programmed cell death 6 interacting protein 11224 rs1127732 PDCD6IP 10015 3 33880570 NM_013374 NP_037506 C/T S730L plus 24151828 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 3p22.3 programmed cell death 6 interacting protein 11225 rs1127732 PDCD6IP 10015 3 33880570 NM_013374 NP_037506 C/T S730L plus 24151828 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 3p22.3 programmed cell death 6 interacting protein 11226 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11227 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11228 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11229 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11230 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11231 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11232 rs1127953 TXNRD1 7296 12 103215759 NM_003330 NP_003321 A/T R156S plus 5586950 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11233 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11234 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11235 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11236 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11237 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11238 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11239 rs1127953 TXNRD1 7296 12 103215759 NM_182729 NP_877393 A/T R156S plus 5586950 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11240 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11241 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11242 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11243 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11244 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11245 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11246 rs1127953 TXNRD1 7296 12 103215759 NM_182742 NP_877419 A/T R156S plus 5586950 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11247 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11248 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11249 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11250 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11251 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11252 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11253 rs1127953 TXNRD1 7296 12 103215759 NM_182743 NP_877420 A/T R156S plus 5586950 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 12q23-q24.1 thioredoxin reductase 1 11254 rs1128349 WBSCR18 84277 7 72542305 NM_032317 NP_115693 A/G G34R minus 10411419 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "by doubleHit,freq,cluster" 7q11.23 Williams Beuren syndrome chromosome region 18 11255 rs1128864 ART3 419 4 77390769 NM_001179 NP_001170 C/T S352L plus 20221271 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 4p15.1-p14 ADP-ribosyltransferase 3 11256 rs1128864 ART3 419 4 77390769 NM_001179 NP_001170 C/T S352L plus 23272540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 4p15.1-p14 ADP-ribosyltransferase 3 11257 rs1128864 ART3 419 4 77390769 NM_001179 NP_001170 C/T S352L plus 23272540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 4p15.1-p14 ADP-ribosyltransferase 3 11258 rs1128864 ART3 419 4 77390769 NM_001179 NP_001170 C/T S352L plus 23272540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 4p15.1-p14 ADP-ribosyltransferase 3 11259 rs1128865 ZNF239 8187 10 43372736 NM_005674 NP_005665 C/G D266E minus 1517158 1303 SEQUENOM CEPH CEPH (92) 92 0.06 106 by freq 10q11.22-q11.23 zinc finger protein 239 11260 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 901 AFFY AfAm 40 0.13 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11261 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 902 AFFY Caucasian 40 0.38 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11262 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 903 AFFY Asian 40 0.45 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11263 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 904 AFFY CEPH 54 0.2 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11264 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 905 AFFY PDpanel 48 0.29 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11265 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 906 AFFY APE 4 1 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11266 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 2800253 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11267 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 12675336 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.38 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11268 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 12675336 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.42 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11269 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 12675336 776 SNP500CANCER AFR1 African / African-American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11270 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 12675336 777 SNP500CANCER HISP1 Hispanic (23) 44 0.25 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11271 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 12675336 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11272 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 24620445 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.33 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11273 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 24620445 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11274 rs1129055 CD86 942 3 123321009 NM_006889 NP_008820 A/G A304T plus 24620445 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11275 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 901 AFFY AfAm 40 0.13 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11276 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 902 AFFY Caucasian 40 0.38 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11277 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 903 AFFY Asian 40 0.45 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11278 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 904 AFFY CEPH 54 0.2 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11279 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 905 AFFY PDpanel 48 0.29 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11280 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 906 AFFY APE 4 1 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11281 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 2800253 1303 SEQUENOM CEPH CEPH (92) 92 0.45 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11282 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 12675336 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.38 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11283 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 12675336 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.42 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11284 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 12675336 776 SNP500CANCER AFR1 African / African-American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11285 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 12675336 777 SNP500CANCER HISP1 Hispanic (23) 44 0.25 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11286 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 12675336 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11287 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 24620445 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.33 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11288 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 24620445 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11289 rs1129055 CD86 942 3 123321009 NM_175862 NP_787058 A/G A310T plus 24620445 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 11290 rs1129167 RSN 6249 12 121337383 NM_002956 NP_002947 C/G D1069E minus 3206194 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.34 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11291 rs1129167 RSN 6249 12 121337383 NM_002956 NP_002947 C/G D1069E minus 23935684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11292 rs1129167 RSN 6249 12 121337383 NM_002956 NP_002947 C/G D1069E minus 23935684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11293 rs1129167 RSN 6249 12 121337383 NM_002956 NP_002947 C/G D1069E minus 23935684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11294 rs1129167 RSN 6249 12 121337383 NM_198240 NP_937883 C/G D1034E minus 3206194 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.34 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11295 rs1129167 RSN 6249 12 121337383 NM_198240 NP_937883 C/G D1034E minus 23935684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11296 rs1129167 RSN 6249 12 121337383 NM_198240 NP_937883 C/G D1034E minus 23935684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11297 rs1129167 RSN 6249 12 121337383 NM_198240 NP_937883 C/G D1034E minus 23935684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 11298 rs1129424 TNFRSF10B 8795 8 22982258 NM_003842 NP_003833 C/T P32L minus 24815848 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by cluster,freq" 8p22-p21 "tumor necrosis factor receptor superfamily, member 10b" 11299 rs1129424 TNFRSF10B 8795 8 22982258 NM_147187 NP_671716 C/T P32L minus 24815848 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 "by cluster,freq" 8p22-p21 "tumor necrosis factor receptor superfamily, member 10b" 11300 rs1129670 PGAM2 5224 7 43875686 XM_498188 XP_498188 A/C T227P minus 1520222 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 by freq 7p13-p12 phosphoglycerate mutase 2 (muscle) 11301 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 3172723 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 38 0.03 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11302 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 16360858 649 FHCRC POPU1 USA (20) 10 0.1 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11303 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 16360858 649 FHCRC POPU1 USA (20) 36 0.15 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11304 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 24534717 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11305 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 24534717 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11306 rs1129763 CCL25 6370 19 8027369 NM_005624 NP_005615 C/T T104M plus 24534717 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19p13.2 chemokine (C-C motif) ligand 25 11307 rs1129770 CMYA5 202333 5 79122639 NM_153610 NP_705838 A/G R1021Q plus 3228552 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.07 123 "HapMap,freq,cluster" 5q14.1 cardiomyopathy associated 5 11308 rs1129770 CMYA5 202333 5 79122639 NM_153610 NP_705838 A/G R1021Q plus 17051896 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.15 123 "HapMap,freq,cluster" 5q14.1 cardiomyopathy associated 5 11309 rs1129770 CMYA5 202333 5 79122639 NM_153610 NP_705838 A/G R1021Q plus 24347424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 5q14.1 cardiomyopathy associated 5 11310 rs1129770 CMYA5 202333 5 79122639 NM_153610 NP_705838 A/G R1021Q plus 24347424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 5q14.1 cardiomyopathy associated 5 11311 rs1129770 CMYA5 202333 5 79122639 NM_153610 NP_705838 A/G R1021Q plus 24347424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 5q14.1 cardiomyopathy associated 5 11312 rs1129923 DUSP23 54935 1 156565139 NM_017823 NP_060293 A/G G131S plus 1520997 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 1q23.1 dual specificity phosphatase 23 11313 rs1129923 DUSP23 54935 1 156565139 NM_017823 NP_060293 A/G G131S plus 1520997 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 1q23.1 dual specificity phosphatase 23 11314 rs1129923 DUSP23 54935 1 156565139 NM_017823 NP_060293 A/G G131S plus 23155328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 1q23.1 dual specificity phosphatase 23 11315 rs1129923 DUSP23 54935 1 156565139 NM_017823 NP_060293 A/G G131S plus 23155328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 1q23.1 dual specificity phosphatase 23 11316 rs1129923 DUSP23 54935 1 156565139 NM_017823 NP_060293 A/G G131S plus 23155328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 1q23.1 dual specificity phosphatase 23 11317 rs1130335 ALPP 250 2 233069091 NM_001632 NP_001623 C/T P25L plus 4934991 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.23 116 "by cluster,freq" 2q37 "alkaline phosphatase, placental (Regan isozyme)" 11318 rs1130480 KIR2DS4 3809 19 60040966 NM_012314 NP_036446 A/T K65M plus 4113798 1303 SEQUENOM CEPH CEPH (92) 92 0.15 106 by freq 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4" 11319 rs1130480 KIR2DS4 3809 19 60040966 NM_178228 NP_839942 A/T K58M plus 4113798 1303 SEQUENOM CEPH CEPH (92) 92 0.15 106 by freq 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4" 11320 rs1130496 PTPRN2 5799 7 157459371 NM_002847 NP_002838 A/G R213H minus 5704205 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11321 rs1130496 PTPRN2 5799 7 157459371 NM_130842 NP_570857 A/G R196H minus 5704205 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11322 rs1130496 PTPRN2 5799 7 157459371 NM_130843 NP_570858 A/G R213H minus 5704205 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11323 rs1130499 PTPRN2 5799 7 157430620 NM_002847 NP_002838 A/G S325N minus 4938398 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11324 rs1130499 PTPRN2 5799 7 157430620 NM_002847 NP_002838 A/G S325N minus 14748797 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11325 rs1130499 PTPRN2 5799 7 157430620 NM_130842 NP_570857 A/G S308N minus 4938398 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11326 rs1130499 PTPRN2 5799 7 157430620 NM_130842 NP_570857 A/G S308N minus 14748797 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11327 rs1130499 PTPRN2 5799 7 157430620 NM_130843 NP_570858 A/G S325N minus 4938398 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11328 rs1130499 PTPRN2 5799 7 157430620 NM_130843 NP_570858 A/G S325N minus 14748797 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "by doubleHit,freq,cluster" 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 11329 rs1130504 KIR2DS4 3809 19 60042920 NM_012314 NP_036446 A/C P199H plus 1522922 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 by freq 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4" 11330 rs1130504 KIR2DS4 3809 19 60042920 NM_178228 NP_839942 A/C P192H plus 1522922 1303 SEQUENOM CEPH CEPH (92) 92 0.08 106 by freq 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4" 11331 rs1130643 SPARCL1 8404 4 88769985 NM_004684 NP_004675 A/G T419A minus 11678719 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 11332 rs1130643 SPARCL1 8404 4 88769985 NM_004684 NP_004675 A/G T419A minus 11678719 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 11333 rs1130643 SPARCL1 8404 4 88769985 NM_004684 NP_004675 A/G T419A minus 23228089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 11334 rs1130643 SPARCL1 8404 4 88769985 NM_004684 NP_004675 A/G T419A minus 23228089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 11335 rs1130643 SPARCL1 8404 4 88769985 NM_004684 NP_004675 A/G T419A minus 23228089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 11336 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 4250740 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.35 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11337 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 4250740 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 22 0.5 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11338 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 4250740 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11339 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 24652879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11340 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 24652879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11341 rs1130866 SFTPB 6439 2 85805399 NM_000542 NP_000533 C/T T131I minus 24652879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11342 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 4250740 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.35 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11343 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 4250740 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 22 0.5 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11344 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 4250740 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11345 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 24652879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11346 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 24652879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11347 rs1130866 SFTPB 6439 2 85805399 NM_198843 NP_942140 C/T T131I minus 24652879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq" 2p12-p11.2 "surfactant, pulmonary-associated protein B" 11348 rs1131199 MOX2 4345 3 113542458 NM_005944 NP_005935 C/G S11C plus 3213395 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.27 123 "by doubleHit,submitter,freq,cluster" 3q12-q13 antigen identified by monoclonal antibody MRC OX-2 11349 rs1131199 MOX2 4345 3 113542458 NM_005944 NP_005935 C/G S11C plus 24354170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 3q12-q13 antigen identified by monoclonal antibody MRC OX-2 11350 rs1131199 MOX2 4345 3 113542458 NM_005944 NP_005935 C/G S11C plus 24354170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 3q12-q13 antigen identified by monoclonal antibody MRC OX-2 11351 rs1131199 MOX2 4345 3 113542458 NM_005944 NP_005935 C/G S11C plus 24354170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 3q12-q13 antigen identified by monoclonal antibody MRC OX-2 11352 rs1131356 FLNB 2317 3 58084202 NM_001457 NP_001448 A/G D1157N plus 6446979 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 11353 rs1131356 FLNB 2317 3 58084202 NM_001457 NP_001448 A/G D1157N plus 6446979 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 11354 rs1131356 FLNB 2317 3 58084202 NM_001457 NP_001448 A/G D1157N plus 23282703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 11355 rs1131356 FLNB 2317 3 58084202 NM_001457 NP_001448 A/G D1157N plus 23282703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 11356 rs1131356 FLNB 2317 3 58084202 NM_001457 NP_001448 A/G D1157N plus 23282703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 11357 rs1131716 SLIC1 124460 16 49268835 NM_153337 NP_699168 C/T P35L minus 5002002 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 116 "HapMap,doubleHit,cluster" 16q12.1 selectin ligand interactor cytoplasmic-1 11358 rs1131716 SLIC1 124460 16 49268835 NM_153337 NP_699168 C/T P35L minus 12363740 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 selectin ligand interactor cytoplasmic-1 11359 rs1131716 SLIC1 124460 16 49268835 NM_182854 NP_878274 C/T P35L minus 5002002 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 116 "HapMap,doubleHit,cluster" 16q12.1 selectin ligand interactor cytoplasmic-1 11360 rs1131716 SLIC1 124460 16 49268835 NM_182854 NP_878274 C/T P35L minus 12363740 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 selectin ligand interactor cytoplasmic-1 11361 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 2503520 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11362 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 2503520 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.46 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11363 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 2503520 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11364 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 2503520 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.11 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11365 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 3176110 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.24 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11366 rs1131857 CPOX 1371 3 99790386 NM_000097 NP_000088 A/C N272H minus 14226076 1303 SEQUENOM CEPH CEPH (92) 92 0.07 119 "by doubleHit,freq,cluster" 3q12 coproporphyrinogen oxidase 11367 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 3117130 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11368 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 3117130 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11369 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 3176913 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.47 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11370 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 3208829 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.43 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11371 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 24211336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11372 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 24211336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11373 rs1131877 TRAF3 7187 14 102411802 NM_003300 NP_003291 A/G M129T minus 24211336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11374 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 3117130 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11375 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 3117130 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11376 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 3176913 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.47 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11377 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 3208829 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.43 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11378 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 24211336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11379 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 24211336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11380 rs1131877 TRAF3 7187 14 102411802 NM_145725 NP_663777 A/G M129T minus 24211336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11381 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 3117130 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11382 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 3117130 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11383 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 3176913 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.47 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11384 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 3208829 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.43 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11385 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 24211336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11386 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 24211336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11387 rs1131877 TRAF3 7187 14 102411802 NM_145726 NP_663778 A/G M129T minus 24211336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 14q32.33 TNF receptor-associated factor 3 11388 rs1132528 YTHDC2 64848 5 112956912 NM_022828 NP_073739 A/T L1409Q plus 4949172 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.25 123 by freq 5q22.3 YTH domain containing 2 11389 rs1132528 YTHDC2 64848 5 112956912 NM_022828 NP_073739 A/T L1409Q plus 24437625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 by freq 5q22.3 YTH domain containing 2 11390 rs1132528 YTHDC2 64848 5 112956912 NM_022828 NP_073739 A/T L1409Q plus 24437625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5q22.3 YTH domain containing 2 11391 rs1132528 YTHDC2 64848 5 112956912 NM_022828 NP_073739 A/T L1409Q plus 24437625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 5q22.3 YTH domain containing 2 11392 rs1132899 APOC4 346 19 50139876 NM_001646 NP_001637 C/T L36P plus 20419756 1232 PHARMGKB_PARC PA129964588 142 0.41 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein C-IV 11393 rs1132899 APOC4 346 19 50139876 NM_001646 NP_001637 C/T L36P plus 20419871 1232 PHARMGKB_PARC PA129964588 142 0.42 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein C-IV 11394 rs1132899 APOC4 346 19 50139876 NM_001646 NP_001637 C/T L36P plus 24572109 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein C-IV 11395 rs1132899 APOC4 346 19 50139876 NM_001646 NP_001637 C/T L36P plus 24572109 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.25 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein C-IV 11396 rs1132899 APOC4 346 19 50139876 NM_001646 NP_001637 C/T L36P plus 24572109 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.33 123 "by doubleHit,freq,cluster" 19q13.2 apolipoprotein C-IV 11397 rs1133090 DPEP2 64174 16 66578969 NM_022355 NP_071750 C/G H468D minus 14272423 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 119 "HapMap,doubleHit,freq,cluster" 16q22.1 dipeptidase 2 11398 rs1133090 DPEP2 64174 16 66578969 NM_022355 NP_071750 C/G H468D minus 14272423 1303 SEQUENOM CEPH CEPH (92) 92 0.01 119 "HapMap,doubleHit,freq,cluster" 16q22.1 dipeptidase 2 11399 rs1133327 ZNF415 55786 19 58304557 NM_018355 NP_060825 A/G I185V minus 2403667 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 19q13.42 zinc finger protein 415 11400 rs1133327 ZNF415 55786 19 58304557 NM_018355 NP_060825 A/G I185V minus 23559042 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 19q13.42 zinc finger protein 415 11401 rs1133327 ZNF415 55786 19 58304557 NM_018355 NP_060825 A/G I185V minus 23559042 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 19q13.42 zinc finger protein 415 11402 rs1133327 ZNF415 55786 19 58304557 NM_018355 NP_060825 A/G I185V minus 23559042 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 19q13.42 zinc finger protein 415 11403 rs1133818 MYCBPAP 84073 17 45961536 NM_032133 NP_115509 C/G S910R plus 16760040 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 by freq 17q21.33 MYCBP associated protein 11404 rs1133818 MYCBPAP 84073 17 45961536 NM_032133 NP_115509 C/G S910R plus 24572261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 17q21.33 MYCBP associated protein 11405 rs1133818 MYCBPAP 84073 17 45961536 NM_032133 NP_115509 C/G S910R plus 24572261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 17q21.33 MYCBP associated protein 11406 rs1133818 MYCBPAP 84073 17 45961536 NM_032133 NP_115509 C/G S910R plus 24572261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 17q21.33 MYCBP associated protein 11407 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 901 AFFY AfAm 10 1 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11408 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 902 AFFY Caucasian 24 0.13 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11409 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 903 AFFY Asian 10 0.4 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11410 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 904 AFFY CEPH 10 0.2 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11411 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 905 AFFY PDpanel 46 0.17 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11412 rs1134647 SMYD2 56950 1 210880681 NM_020197 NP_064582 A/G G165E plus 9888353 1303 SEQUENOM CEPH CEPH (92) 92 0.07 121 "by doubleHit,freq,cluster" 1q32.3 SET and MYND domain containing 2 11413 rs1134921 GAK 2580 4 833338 NM_005255 NP_005246 A/G D1297N minus 1536705 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 by freq 4p16 cyclin G associated kinase 11414 rs1135045 GGA2 23062 16 23397212 NM_015044 NP_055859 C/G A424P minus 3247661 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.32 123 "HapMap,doubleHit,freq,cluster" 16p12 "golgi associated, gamma adaptin ear containing, ARF binding protein 2" 11415 rs1135045 GGA2 23062 16 23397212 NM_015044 NP_055859 C/G A424P minus 12351308 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 16p12 "golgi associated, gamma adaptin ear containing, ARF binding protein 2" 11416 rs1135045 GGA2 23062 16 23397212 NM_015044 NP_055859 C/G A424P minus 23965094 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 16p12 "golgi associated, gamma adaptin ear containing, ARF binding protein 2" 11417 rs1135045 GGA2 23062 16 23397212 NM_015044 NP_055859 C/G A424P minus 23965094 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.32 123 "HapMap,doubleHit,freq,cluster" 16p12 "golgi associated, gamma adaptin ear containing, ARF binding protein 2" 11418 rs1135045 GGA2 23062 16 23397212 NM_015044 NP_055859 C/G A424P minus 23965094 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 16p12 "golgi associated, gamma adaptin ear containing, ARF binding protein 2" 11419 rs1135062 LU 4059 19 50014584 NM_005581 NP_005572 A/G T539A plus 23609959 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 19q13.2 Lutheran blood group (Auberger b antigen included) 11420 rs1135062 LU 4059 19 50014584 NM_005581 NP_005572 A/G T539A plus 23609959 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 19q13.2 Lutheran blood group (Auberger b antigen included) 11421 rs1135062 LU 4059 19 50014584 NM_005581 NP_005572 A/G T539A plus 23609959 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 19q13.2 Lutheran blood group (Auberger b antigen included) 11422 rs1135889 FBF1 85302 17 71437716 XM_371079 XP_371079 A/C G65V plus 4990119 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.21 123 "HapMap,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 11423 rs1135889 FBF1 85302 17 71437716 XM_371079 XP_371079 A/C G65V plus 4990119 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1312 0.25 123 "HapMap,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 11424 rs1135889 FBF1 85302 17 71437716 XM_371079 XP_371079 A/C G65V plus 24562935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 11425 rs1135889 FBF1 85302 17 71437716 XM_371079 XP_371079 A/C G65V plus 24562935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 11426 rs1135889 FBF1 85302 17 71437716 XM_371079 XP_371079 A/C G65V plus 24562935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 11427 rs1136287 SERPINF1 5176 17 1620026 NM_002615 NP_002606 C/T T72M plus 16740281 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1" 11428 rs1136287 SERPINF1 5176 17 1620026 NM_002615 NP_002606 C/T T72M plus 16740281 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1" 11429 rs1136287 SERPINF1 5176 17 1620026 NM_002615 NP_002606 C/T T72M plus 23998451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1" 11430 rs1136287 SERPINF1 5176 17 1620026 NM_002615 NP_002606 C/T T72M plus 23998451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1" 11431 rs1136287 SERPINF1 5176 17 1620026 NM_002615 NP_002606 C/T T72M plus 23998451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1" 11432 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 2667857 506 NCBI NIHPDR NIHPDR 96 0.22 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11433 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 3217971 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.41 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11434 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 4480525 693 EGP_SNPS PDR90 NIHPDR 176 0.19 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11435 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 5586195 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11436 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 5586195 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.11 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11437 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 5586195 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11438 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 5586195 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11439 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 5586195 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11440 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 16458167 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11441 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 23858521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11442 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 23858521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11443 rs1136410 ADPRT 142 1 222862037 NM_001618 NP_001609 C/T V762A minus 23858521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 11444 rs1136703 SULT1A2 6799 16 28514733 NM_001054 NP_001045 C/T I7T minus 16341412 1166 PHARMGKB_PPII PA128747821 240 0.3 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 11445 rs1136703 SULT1A2 6799 16 28514733 NM_177528 NP_803564 C/T I7T minus 16341412 1166 PHARMGKB_PPII PA128747821 240 0.3 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 11446 rs1137100 LEPR 3953 1 65748462 NM_002303 NP_002294 A/G K109R plus 12568615 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1838 0.29 123 "by doubleHit,freq,cluster" 1p31 leptin receptor 11447 rs1137100 LEPR 3953 1 65748462 NM_002303 NP_002294 A/G K109R plus 24236809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1p31 leptin receptor 11448 rs1137100 LEPR 3953 1 65748462 NM_002303 NP_002294 A/G K109R plus 24236809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1p31 leptin receptor 11449 rs1137100 LEPR 3953 1 65748462 NM_002303 NP_002294 A/G K109R plus 24236809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 1p31 leptin receptor 11450 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 1543089 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.36 123 "by cluster,freq" 1p31 leptin receptor 11451 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 1543089 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.48 123 "by cluster,freq" 1p31 leptin receptor 11452 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 1543089 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.21 123 "by cluster,freq" 1p31 leptin receptor 11453 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 3176444 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.28 123 "by cluster,freq" 1p31 leptin receptor 11454 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 12675515 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.34 123 "by cluster,freq" 1p31 leptin receptor 11455 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 12675515 775 SNP500CANCER CAUC1 Caucasian (31) 31 0.5 123 "by cluster,freq" 1p31 leptin receptor 11456 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 12675515 776 SNP500CANCER AFR1 African / African-American (24) 48 0.19 123 "by cluster,freq" 1p31 leptin receptor 11457 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 12675515 777 SNP500CANCER HISP1 Hispanic (23) 21 0.5 123 "by cluster,freq" 1p31 leptin receptor 11458 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 12675515 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.15 123 "by cluster,freq" 1p31 leptin receptor 11459 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 24236819 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by cluster,freq" 1p31 leptin receptor 11460 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 24236819 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 1p31 leptin receptor 11461 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 24236819 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 1p31 leptin receptor 11462 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 24796087 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by cluster,freq" 1p31 leptin receptor 11463 rs1137101 LEPR 3953 1 65770534 NM_002303 NP_002294 A/G Q223R plus 24796667 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 1p31 leptin receptor 11464 rs1137582 ACOX1 51 17 71461135 NM_004035 NP_004026 C/G I312M minus 3377352 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11465 rs1137582 ACOX1 51 17 71461135 NM_004035 NP_004026 C/G I312M minus 3377352 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11466 rs1137582 ACOX1 51 17 71461135 NM_004035 NP_004026 C/G I312M minus 24563054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11467 rs1137582 ACOX1 51 17 71461135 NM_004035 NP_004026 C/G I312M minus 24563054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11468 rs1137582 ACOX1 51 17 71461135 NM_004035 NP_004026 C/G I312M minus 24563054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11469 rs1137582 ACOX1 51 17 71461135 NM_007292 NP_009223 C/G I312M minus 3377352 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11470 rs1137582 ACOX1 51 17 71461135 NM_007292 NP_009223 C/G I312M minus 3377352 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11471 rs1137582 ACOX1 51 17 71461135 NM_007292 NP_009223 C/G I312M minus 24563054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11472 rs1137582 ACOX1 51 17 71461135 NM_007292 NP_009223 C/G I312M minus 24563054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11473 rs1137582 ACOX1 51 17 71461135 NM_007292 NP_009223 C/G I312M minus 24563054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 11474 rs1138294 MAP3K6 9064 1 27372775 NM_004672 NP_004663 C/T T455I minus 9844384 1303 SEQUENOM CEPH CEPH (92) 92 0.44 116 "by doubleHit,freq,cluster" 1p35.3 mitogen-activated protein kinase kinase kinase 6 11475 rs1138358 BCL2A1 597 15 78050400 NM_004049 NP_004040 G/T N39K minus 4929433 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,submitter,freq,cluster" 15q24.3 BCL2-related protein A1 11476 rs1138358 BCL2A1 597 15 78050400 NM_004049 NP_004040 G/T N39K minus 4929433 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,submitter,freq,cluster" 15q24.3 BCL2-related protein A1 11477 rs1138358 BCL2A1 597 15 78050400 NM_004049 NP_004040 G/T N39K minus 24064940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 15q24.3 BCL2-related protein A1 11478 rs1138358 BCL2A1 597 15 78050400 NM_004049 NP_004040 G/T N39K minus 24064940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q24.3 BCL2-related protein A1 11479 rs1138358 BCL2A1 597 15 78050400 NM_004049 NP_004040 G/T N39K minus 24064940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,submitter,freq,cluster" 15q24.3 BCL2-related protein A1 11480 rs1138454 TBC1D5 9779 3 17183271 NM_014744 NP_055559 A/G I696V minus 16988313 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,submitter,freq,cluster" 3p24.3 "TBC1 domain family, member 5" 11481 rs1138454 TBC1D5 9779 3 17183271 NM_014744 NP_055559 A/G I696V minus 24619657 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 3p24.3 "TBC1 domain family, member 5" 11482 rs1138454 TBC1D5 9779 3 17183271 NM_014744 NP_055559 A/G I696V minus 24619657 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 3p24.3 "TBC1 domain family, member 5" 11483 rs1138454 TBC1D5 9779 3 17183271 NM_014744 NP_055559 A/G I696V minus 24619657 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 3p24.3 "TBC1 domain family, member 5" 11484 rs1138693 TTS-2.2 57104 11 814789 NM_020376 NP_065109 C/T L481P plus 15639627 1303 SEQUENOM CEPH CEPH (92) 92 0.36 120 by freq 11p15.5 transport-secretion protein 2.2 11485 rs1138800 PANX1 24145 11 93502141 NM_015368 NP_056183 A/C Q5H plus 16098151 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 11q21 pannexin 1 11486 rs1138800 PANX1 24145 11 93502141 NM_015368 NP_056183 A/C Q5H plus 24136936 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 "by doubleHit,freq,cluster" 11q21 pannexin 1 11487 rs1138800 PANX1 24145 11 93502141 NM_015368 NP_056183 A/C Q5H plus 24136936 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 11q21 pannexin 1 11488 rs1138800 PANX1 24145 11 93502141 NM_015368 NP_056183 A/C Q5H plus 24136936 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 11q21 pannexin 1 11489 rs1139776 KDR 3791 4 55804828 NM_002253 NP_002244 A/T V848E minus 1549277 1303 SEQUENOM CEPH CEPH (92) 92 0.03 106 by freq 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 11490 rs1140159 SH3GLB2 56904 9 128851095 NM_020145 NP_064530 A/G M308I minus 1550084 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 86 HapMap 9q34 SH3-domain GRB2-like endophilin B2 11491 rs1140605 ITGBL1 9358 13 101018194 NM_004791 NP_004782 G/T A154S plus 3214308 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 123 by freq 13q33 "integrin, beta-like 1 (with EGF-like repeat domains)" 11492 rs1140605 ITGBL1 9358 13 101018194 NM_004791 NP_004782 G/T A154S plus 24177706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 13q33 "integrin, beta-like 1 (with EGF-like repeat domains)" 11493 rs1140605 ITGBL1 9358 13 101018194 NM_004791 NP_004782 G/T A154S plus 24177706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 13q33 "integrin, beta-like 1 (with EGF-like repeat domains)" 11494 rs1140605 ITGBL1 9358 13 101018194 NM_004791 NP_004782 G/T A154S plus 24177706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 by freq 13q33 "integrin, beta-like 1 (with EGF-like repeat domains)" 11495 rs1140952 MGEA6 4253 14 38887779 NM_005930 NP_005921 A/G I699V plus 3240825 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11496 rs1140952 MGEA6 4253 14 38887779 NM_005930 NP_005921 A/G I699V plus 3240825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11497 rs1140952 MGEA6 4253 14 38887779 NM_005930 NP_005921 A/G I699V plus 3240825 1303 SEQUENOM CEPH CEPH (92) 92 0.23 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11498 rs1140952 MGEA6 4253 14 38887779 NM_203354 NP_976229 A/G I687V plus 3240825 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11499 rs1140952 MGEA6 4253 14 38887779 NM_203354 NP_976229 A/G I687V plus 3240825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11500 rs1140952 MGEA6 4253 14 38887779 NM_203354 NP_976229 A/G I687V plus 3240825 1303 SEQUENOM CEPH CEPH (92) 92 0.23 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11501 rs1140952 MGEA6 4253 14 38887779 NM_203355 NP_976230 A/G I656V plus 3240825 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11502 rs1140952 MGEA6 4253 14 38887779 NM_203355 NP_976230 A/G I656V plus 3240825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11503 rs1140952 MGEA6 4253 14 38887779 NM_203355 NP_976230 A/G I656V plus 3240825 1303 SEQUENOM CEPH CEPH (92) 92 0.23 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11504 rs1140952 MGEA6 4253 14 38887779 NM_203356 NP_976231 A/G I670V plus 3240825 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11505 rs1140952 MGEA6 4253 14 38887779 NM_203356 NP_976231 A/G I670V plus 3240825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11506 rs1140952 MGEA6 4253 14 38887779 NM_203356 NP_976231 A/G I670V plus 3240825 1303 SEQUENOM CEPH CEPH (92) 92 0.23 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11507 rs1140952 MGEA6 4253 14 38887779 NM_203357 NP_976232 A/G I624V plus 3240825 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11508 rs1140952 MGEA6 4253 14 38887779 NM_203357 NP_976232 A/G I624V plus 3240825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11509 rs1140952 MGEA6 4253 14 38887779 NM_203357 NP_976232 A/G I624V plus 3240825 1303 SEQUENOM CEPH CEPH (92) 92 0.23 106 "HapMap,freq,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 11510 rs1141223 ENDOGL1 9941 3 38540580 NM_005107 NP_005098 G/T G277V plus 1552276 1303 SEQUENOM CEPH CEPH (92) 92 0.07 86 by freq 3p21.3 endonuclease G-like 1 11511 rs1143650 HSD17B4 3295 5 118860143 NM_000414 NP_000405 C/G T292S plus 1556782 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 56 0.03 123 "by doubleHit,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 11512 rs1143650 HSD17B4 3295 5 118860143 NM_000414 NP_000405 C/G T292S plus 23306167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 11513 rs1143650 HSD17B4 3295 5 118860143 NM_000414 NP_000405 C/G T292S plus 23306167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 11514 rs1143650 HSD17B4 3295 5 118860143 NM_000414 NP_000405 C/G T292S plus 23306167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 11515 rs1143672 SLC15A2 6565 3 123130858 NM_021082 NP_066568 A/G R509K plus 1556822 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 52 0.33 119 "by doubleHit,freq,cluster" 3q21.1 "solute carrier family 15 (H+/peptide transporter), member 2" 11516 rs1143672 SLC15A2 6565 3 123130858 NM_021082 NP_066568 A/G R509K plus 2806411 1303 SEQUENOM CEPH CEPH (92) 91 0.34 119 "by doubleHit,freq,cluster" 3q21.1 "solute carrier family 15 (H+/peptide transporter), member 2" 11517 rs1143678 ITGAM 3684 16 31250506 NM_000632 NP_000623 C/T P1146S plus 1556828 523 WIAF-CSNP WIAF-CSNP-MITOGPOP4 "Europeans (20), Asians (10) and African-Americans (10)" 62 0.33 116 "HapMap,doubleHit,freq,cluster" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 11518 rs1143678 ITGAM 3684 16 31250506 NM_000632 NP_000623 C/T P1146S plus 10844979 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq,cluster" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 11519 rs1144122 GPR128 84873 3 101837214 NM_032787 NP_116176 A/G K151E plus 24320396 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq" 3q12.3 G protein-coupled receptor 128 11520 rs1144122 GPR128 84873 3 101837214 NM_032787 NP_116176 A/G K151E plus 24320396 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq" 3q12.3 G protein-coupled receptor 128 11521 rs1144122 GPR128 84873 3 101837214 NM_032787 NP_116176 A/G K151E plus 24320396 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq" 3q12.3 G protein-coupled receptor 128 11522 rs1144507 ZNF202 7753 11 123105685 NM_003455 NP_003446 A/G V154A plus 4062641 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq" 11q23.3 zinc finger protein 202 11523 rs1145234 PMS1 5378 2 190558065 NM_000534 NP_000525 C/T Y793H plus 2978052 506 NCBI NIHPDR NIHPDR 82 0.01 123 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 11524 rs1145234 PMS1 5378 2 190558065 NM_000534 NP_000525 C/T Y793H plus 7986979 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 11525 rs1145234 PMS1 5378 2 190558065 NM_000534 NP_000525 C/T Y793H plus 7986979 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 11526 rs1147238 SMP3 80235 3 198162828 NM_025163 NP_079439 A/G V417A plus 1687759 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 "by doubleHit,freq,cluster" 3q29 SMP3 mannosyltransferase 11527 rs1147238 SMP3 80235 3 198162828 NM_025163 NP_079439 A/G V417A plus 1689251 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 120 "by doubleHit,freq,cluster" 3q29 SMP3 mannosyltransferase 11528 rs1147238 SMP3 80235 3 198162828 NM_025163 NP_079439 A/G V417A plus 1689251 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 120 "by doubleHit,freq,cluster" 3q29 SMP3 mannosyltransferase 11529 rs1147238 SMP3 80235 3 198162828 NM_025163 NP_079439 A/G V417A plus 1689251 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 120 "by doubleHit,freq,cluster" 3q29 SMP3 mannosyltransferase 11530 rs1147238 SMP3 80235 3 198162828 NM_025163 NP_079439 A/G V417A plus 1689251 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 98 0.11 120 "by doubleHit,freq,cluster" 3q29 SMP3 mannosyltransferase 11531 rs1147990 TTC4 7268 1 54894321 NM_004623 NP_004614 A/T S47T minus 2439493 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.41 120 "by doubleHit,freq,cluster" 1p31.3 tetratricopeptide repeat domain 4 11532 rs1147990 TTC4 7268 1 54894321 NM_004623 NP_004614 A/T S47T minus 2439493 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.25 120 "by doubleHit,freq,cluster" 1p31.3 tetratricopeptide repeat domain 4 11533 rs1150258 IL24 11009 1 203463300 NM_006850 NP_006841 A/G Y124H minus 4328649 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q32 interleukin 24 11534 rs1150258 IL24 11009 1 203463300 NM_006850 NP_006841 A/G Y124H minus 4328649 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 23 0.5 123 "by doubleHit,submitter,freq,cluster" 1q32 interleukin 24 11535 rs1150258 IL24 11009 1 203463300 NM_006850 NP_006841 A/G Y124H minus 16404286 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,submitter,freq,cluster" 1q32 interleukin 24 11536 rs1151687 OR2G3 81469 1 244078060 XM_377633 XP_377633 C/G V118L minus 24325768 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 11537 rs1151687 OR2G3 81469 1 244078060 XM_377633 XP_377633 C/G V118L minus 24325768 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 11538 rs1151687 OR2G3 81469 1 244078060 XM_377633 XP_377633 C/G V118L minus 24325768 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq" 1 "olfactory receptor, family 2, subfamily G, member 3" 11539 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 1593320 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11540 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 1593320 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11541 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 3236783 738 YUSUKE JBIC-ALLELE Japanese (752) 926 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11542 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 15356011 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11543 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 15356011 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11544 rs1152888 IRAK3 11213 12 64891495 NM_007199 NP_009130 A/G I147V plus 15356011 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 interleukin-1 receptor-associated kinase 3 11545 rs1153850 SPATA5L1 79029 15 43482275 NM_024063 NP_076968 C/G R119P minus 2234075 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 15q15.1 spermatogenesis associated 5-like 1 11546 rs1153850 SPATA5L1 79029 15 43482275 NM_024063 NP_076968 C/G R119P minus 23465530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by doubleHit,freq,cluster" 15q15.1 spermatogenesis associated 5-like 1 11547 rs1153850 SPATA5L1 79029 15 43482275 NM_024063 NP_076968 C/G R119P minus 23465530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.47 123 "by doubleHit,freq,cluster" 15q15.1 spermatogenesis associated 5-like 1 11548 rs1153850 SPATA5L1 79029 15 43482275 NM_024063 NP_076968 C/G R119P minus 23465530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 15q15.1 spermatogenesis associated 5-like 1 11549 rs1154232 LAMA3 3909 18 19765032 NM_000227 NP_000218 A/C N1206K plus 1925354 1303 SEQUENOM CEPH CEPH (92) 92 0.26 92 by freq 18q11.2 "laminin, alpha 3" 11550 rs1154232 LAMA3 3909 18 19765032 NM_198129 NP_937762 A/C N2815K plus 1925354 1303 SEQUENOM CEPH CEPH (92) 92 0.26 92 by freq 18q11.2 "laminin, alpha 3" 11551 rs1154233 LAMA3 3909 18 19765087 NM_000227 NP_000218 A/G S1225G plus 1925355 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 18q11.2 "laminin, alpha 3" 11552 rs1154233 LAMA3 3909 18 19765087 NM_000227 NP_000218 A/G S1225G plus 1925355 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,doubleHit,cluster" 18q11.2 "laminin, alpha 3" 11553 rs1154233 LAMA3 3909 18 19765087 NM_198129 NP_937762 A/G S2834G plus 1925355 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 18q11.2 "laminin, alpha 3" 11554 rs1154233 LAMA3 3909 18 19765087 NM_198129 NP_937762 A/G S2834G plus 1925355 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,doubleHit,cluster" 18q11.2 "laminin, alpha 3" 11555 rs1154510 HPD 3242 12 120758055 NM_002150 NP_002141 A/G T33A minus 1593356 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "by doubleHit,freq,cluster" 12q24-qter 4-hydroxyphenylpyruvate dioxygenase 11556 rs1154510 HPD 3242 12 120758055 NM_002150 NP_002141 A/G T33A minus 23934720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 12q24-qter 4-hydroxyphenylpyruvate dioxygenase 11557 rs1154510 HPD 3242 12 120758055 NM_002150 NP_002141 A/G T33A minus 23934720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 12q24-qter 4-hydroxyphenylpyruvate dioxygenase 11558 rs1154510 HPD 3242 12 120758055 NM_002150 NP_002141 A/G T33A minus 23934720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,freq,cluster" 12q24-qter 4-hydroxyphenylpyruvate dioxygenase 11559 rs1156287 STXBP4 252983 17 50431798 NM_178509 NP_848604 C/T G15R minus 1559587 901 AFFY AfAm 10 1 121 "by cluster,freq" 17q22 syntaxin binding protein 4 11560 rs1156287 STXBP4 252983 17 50431798 NM_178509 NP_848604 C/T G15R minus 1559587 902 AFFY Caucasian 20 0.1 121 "by cluster,freq" 17q22 syntaxin binding protein 4 11561 rs1156287 STXBP4 252983 17 50431798 NM_178509 NP_848604 C/T G15R minus 1559587 903 AFFY Asian 12 0.08 121 "by cluster,freq" 17q22 syntaxin binding protein 4 11562 rs1156287 STXBP4 252983 17 50431798 NM_178509 NP_848604 C/T G15R minus 1559587 904 AFFY CEPH 5 0.5 121 "by cluster,freq" 17q22 syntaxin binding protein 4 11563 rs1156287 STXBP4 252983 17 50431798 NM_178509 NP_848604 C/T G15R minus 1559587 905 AFFY PDpanel 40 0.05 121 "by cluster,freq" 17q22 syntaxin binding protein 4 11564 rs1156525 ZNF214 7761 11 6979107 XM_495864 XP_495864 A/T L128H plus 3195062 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.24 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 214 11565 rs1156525 ZNF214 7761 11 6979107 XM_495864 XP_495864 A/T L128H plus 24519469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 214 11566 rs1156525 ZNF214 7761 11 6979107 XM_495864 XP_495864 A/T L128H plus 24519469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 214 11567 rs1156525 ZNF214 7761 11 6979107 XM_495864 XP_495864 A/T L128H plus 24519469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 214 11568 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 1559928 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11569 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 1559928 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11570 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 3195061 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11571 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 24519479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11572 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 24519479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11573 rs1156526 ZNF214 7761 11 6979293 XM_495864 XP_495864 C/T Y66C plus 24519479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 11574 rs1159148 AIM1 202 6 107073878 XM_166300 XP_166300 G/T Q916P minus 5523567 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq" 6q21 absent in melanoma 1 11575 rs1159148 AIM1 202 6 107073878 XM_166300 XP_166300 G/T Q916P minus 24360619 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq" 6q21 absent in melanoma 1 11576 rs1159148 AIM1 202 6 107073878 XM_166300 XP_166300 G/T Q916P minus 24360619 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq" 6q21 absent in melanoma 1 11577 rs1159148 AIM1 202 6 107073878 XM_166300 XP_166300 G/T Q916P minus 24360619 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,submitter,freq" 6q21 absent in melanoma 1 11578 rs1165165 SLC17A3 10786 6 25970445 NM_006632 NP_006623 A/G A81T minus 1581311 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by submitter,freq,cluster" 6p21.3 "solute carrier family 17 (sodium phosphate), member 3" 11579 rs1165165 SLC17A3 10786 6 25970445 NM_006632 NP_006623 A/G A81T minus 24429083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by submitter,freq,cluster" 6p21.3 "solute carrier family 17 (sodium phosphate), member 3" 11580 rs1165165 SLC17A3 10786 6 25970445 NM_006632 NP_006623 A/G A81T minus 24429083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 6p21.3 "solute carrier family 17 (sodium phosphate), member 3" 11581 rs1165165 SLC17A3 10786 6 25970445 NM_006632 NP_006623 A/G A81T minus 24429083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq,cluster" 6p21.3 "solute carrier family 17 (sodium phosphate), member 3" 11582 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 2093788 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11583 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 2594583 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.06 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11584 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 2594583 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.42 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11585 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 3209756 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.15 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11586 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 24428895 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11587 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 24428895 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11588 rs1165196 SLC17A1 6568 6 25921129 NM_005074 NP_005065 C/T T269I minus 24428895 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 6p23-p21.3 "solute carrier family 17 (sodium phosphate), member 1" 11589 rs1165222 USP24 23358 1 55350096 XM_371254 XP_371254 C/T T195I minus 24243738 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 11590 rs1165222 USP24 23358 1 55350096 XM_371254 XP_371254 C/T T195I minus 24243738 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 11591 rs1165222 USP24 23358 1 55350096 XM_371254 XP_371254 C/T T195I minus 24243738 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 1p32.3 ubiquitin specific protease 24 11592 rs1168312 HELB 92797 12 65011469 NM_033647 NP_387467 A/G T980I minus 1592382 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by cluster,freq" 12q14.2 helicase (DNA) B 11593 rs1168312 HELB 92797 12 65011469 NM_033647 NP_387467 A/G T980I minus 3217406 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.2 123 "by cluster,freq" 12q14.2 helicase (DNA) B 11594 rs1168312 HELB 92797 12 65011469 NM_033647 NP_387467 A/G T980I minus 24214106 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 12q14.2 helicase (DNA) B 11595 rs1168312 HELB 92797 12 65011469 NM_033647 NP_387467 A/G T980I minus 24214106 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 12q14.2 helicase (DNA) B 11596 rs1168312 HELB 92797 12 65011469 NM_033647 NP_387467 A/G T980I minus 24214106 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 12q14.2 helicase (DNA) B 11597 rs1169288 TCF1 6927 12 119879370 NM_000545 NP_000536 G/T I27L minus 1595449 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 11598 rs1169288 TCF1 6927 12 119879370 NM_000545 NP_000536 G/T I27L minus 4937187 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.5 123 "by doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 11599 rs1169288 TCF1 6927 12 119879370 NM_000545 NP_000536 G/T I27L minus 23932948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "by doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 11600 rs1169288 TCF1 6927 12 119879370 NM_000545 NP_000536 G/T I27L minus 23932948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 11601 rs1169288 TCF1 6927 12 119879370 NM_000545 NP_000536 G/T I27L minus 23932948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 11602 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 2462523 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11603 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 2462523 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11604 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 2462523 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11605 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 2462523 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11606 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 12586867 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11607 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 24675275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11608 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 24675275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11609 rs1170672 KCNMB3 27094 3 180451362 NM_014407 NP_055222 C/T D44G plus 24675275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11610 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 2462523 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11611 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 2462523 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11612 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 2462523 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11613 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 2462523 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11614 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 12586867 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11615 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 24675275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11616 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 24675275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11617 rs1170672 KCNMB3 27094 3 180451362 NM_171828 NP_741979 C/T D42G plus 24675275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11618 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 2462523 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11619 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 2462523 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11620 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 2462523 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11621 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 2462523 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11622 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 12586867 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11623 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 24675275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11624 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 24675275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11625 rs1170672 KCNMB3 27094 3 180451362 NM_171829 NP_741980 C/T D22G plus 24675275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11626 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 2462523 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11627 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 2462523 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11628 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 2462523 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11629 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 2462523 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.07 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11630 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 12586867 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11631 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 24675275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11632 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 24675275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11633 rs1170672 KCNMB3 27094 3 180451362 NM_171830 NP_741981 C/T D40G plus 24675275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 11634 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 1623081 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11635 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 1623081 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11636 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 3212753 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11637 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 23605381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11638 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 23605381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11639 rs1176744 HTR3B 9177 11 113308238 NM_006028 NP_006019 G/T Y129S minus 23605381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 11640 rs1177573 PSMD9 5715 12 120800418 NM_002813 NP_002804 A/G R134W minus 1626025 1303 SEQUENOM CEPH CEPH (92) 92 0.23 116 "by doubleHit,freq,cluster" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 11641 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 1627222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11642 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 1627222 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11643 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 2585786 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11644 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 2585786 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11645 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 2585786 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11646 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 23550423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11647 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 23550423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11648 rs1178027 PTPRA 5786 20 2893759 NM_002836 NP_002827 C/T P109L plus 23550423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11649 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 1627222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11650 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 1627222 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11651 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 2585786 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11652 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 2585786 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11653 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 2585786 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11654 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 23550423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11655 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 23550423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11656 rs1178027 PTPRA 5786 20 2893759 NM_080840 NP_543030 C/T P109L plus 23550423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11657 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 1627222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11658 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 1627222 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11659 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 2585786 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11660 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 2585786 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11661 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 2585786 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11662 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 23550423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11663 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 23550423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11664 rs1178027 PTPRA 5786 20 2893759 NM_080841 NP_543031 C/T P109L plus 23550423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "protein tyrosine phosphatase, receptor type, A" 11665 rs1180116 SMC5L1 23137 9 70126988 NM_015110 NP_055925 A/G V306I plus 1637817 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11666 rs1180116 SMC5L1 23137 9 70126988 NM_015110 NP_055925 A/G V306I plus 1637817 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11667 rs1180116 SMC5L1 23137 9 70126988 NM_015110 NP_055925 A/G V306I plus 24202145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11668 rs1180116 SMC5L1 23137 9 70126988 NM_015110 NP_055925 A/G V306I plus 24202145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "HapMap,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11669 rs1180116 SMC5L1 23137 9 70126988 NM_015110 NP_055925 A/G V306I plus 24202145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "HapMap,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11670 rs1180117 SMC5L1 23137 9 70126994 NM_015110 NP_055925 C/T C308R plus 1637818 1303 SEQUENOM CEPH CEPH (92) 92 0.26 119 "by doubleHit,freq,cluster" 9q21.2 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) 11671 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 1658154 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11672 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 1658154 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11673 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 3217407 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11674 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 24705914 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11675 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 24705914 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11676 rs1185244 HELB 92797 12 65011427 NM_033647 NP_387467 A/G P966L minus 24705914 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 12q14.2 helicase (DNA) B 11677 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.27 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11678 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.46 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11679 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.44 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11680 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 44 0.5 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11681 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11682 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 1658158 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11683 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 23808330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11684 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 23808330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11685 rs1185246 MARVELD2 153562 5 68751066 NM_144724 NP_653325 C/T T33I plus 23808330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.45 123 "HapMap,doubleHit,freq,cluster" 5q13.1 MARVEL (membrane-associating) domain containing 2 11686 rs1185845 HCFC2 29915 12 102983163 NM_013320 NP_037452 C/T E379K minus 1659754 1303 SEQUENOM CEPH CEPH (92) 92 0.42 100 by freq 12q23.3 host cell factor 2 11687 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 901 AFFY AfAm 40 0.08 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11688 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 902 AFFY Caucasian 32 0.25 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11689 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 903 AFFY Asian 40 0.13 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11690 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 904 AFFY CEPH 48 0.33 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11691 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 905 AFFY PDpanel 46 0.28 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11692 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 906 AFFY APE 1 0.5 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11693 rs1186902 GABRR1 2569 6 89983681 NM_002042 NP_002033 C/T H21R plus 2912664 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 by freq 6q13-q16.3 "gamma-aminobutyric acid (GABA) receptor, rho 1" 11694 rs1188721 OBSCN 84033 1 224770983 NM_052843 NP_443075 G/T D2106E plus 1668695 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "by cluster,freq" 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 11695 rs1188722 OBSCN 84033 1 224771011 NM_052843 NP_443075 C/T F2116L plus 1668696 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "by cluster,freq" 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 11696 rs1188729 OBSCN 84033 1 224812403 NM_052843 NP_443075 C/G S4642C plus 4982175 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1304 0.23 121 "by doubleHit,freq,cluster" 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 11697 rs1190788 AKAP7 9465 6 131562348 NM_016377 NP_057461 C/T S193N minus 1675436 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 11698 rs1190788 AKAP7 9465 6 131562348 NM_016377 NP_057461 C/T S193N minus 24407122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 11699 rs1190788 AKAP7 9465 6 131562348 NM_016377 NP_057461 C/T S193N minus 24407122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 11700 rs1190788 AKAP7 9465 6 131562348 NM_016377 NP_057461 C/T S193N minus 24407122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 11701 rs1190975 EVL 51466 14 99620778 NM_016337 NP_057421 G/T E5X plus 1675905 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 92 HapMap 14q32.32 Enah/Vasp-like 11702 rs1190975 EVL 51466 14 99620778 NM_016337 NP_057421 G/T E5X plus 1675905 1303 SEQUENOM CEPH CEPH (92) 92 1 92 HapMap 14q32.32 Enah/Vasp-like 11703 rs1191778 WDR35 57539 2 20052707 NM_020779 NP_065830 C/T E972G plus 1678559 1303 SEQUENOM CEPH CEPH (92) 92 0.3 92 "by submitter,freq" 2p24.3 WD repeat domain 35 11704 rs1193851 PCNXL3 399909 11 65142782 XM_374898 XP_374898 C/G S441C minus 1685672 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "by doubleHit,freq,cluster" 11q13.1 pecanex-like 3 (Drosophila) 11705 rs1193851 PCNXL3 399909 11 65142782 XM_374898 XP_374898 C/G S441C minus 2507805 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 120 "by doubleHit,freq,cluster" 11q13.1 pecanex-like 3 (Drosophila) 11706 rs1193851 PCNXL3 399909 11 65142782 XM_374898 XP_374898 C/G S441C minus 2507805 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 16 0.19 120 "by doubleHit,freq,cluster" 11q13.1 pecanex-like 3 (Drosophila) 11707 rs1193851 PCNXL3 399909 11 65142782 XM_374898 XP_374898 C/G S441C minus 2507805 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 120 "by doubleHit,freq,cluster" 11q13.1 pecanex-like 3 (Drosophila) 11708 rs1193851 PCNXL3 399909 11 65142782 XM_374898 XP_374898 C/G S441C minus 2507805 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.28 120 "by doubleHit,freq,cluster" 11q13.1 pecanex-like 3 (Drosophila) 11709 rs1194099 DKFZp762C186 254102 11 65106425 XM_170658 XP_170658 A/T D569V minus 1686656 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 11q13.1 tangerin 11710 rs1197660 SPTBN5 51332 15 39933228 NM_016642 NP_057726 C/G A3275G plus 1701593 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11711 rs1197660 SPTBN5 51332 15 39933228 NM_016642 NP_057726 C/G A3275G plus 1701593 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11712 rs1197660 SPTBN5 51332 15 39933228 NM_016642 NP_057726 C/G A3275G plus 23361402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11713 rs1197660 SPTBN5 51332 15 39933228 NM_016642 NP_057726 C/G A3275G plus 23361402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11714 rs1197660 SPTBN5 51332 15 39933228 NM_016642 NP_057726 C/G A3275G plus 23361402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11715 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 1701598 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11716 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 1701598 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11717 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 3216389 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11718 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 23957421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11719 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 23957421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11720 rs1197665 SPTBN5 51332 15 39930825 NM_016642 NP_057726 A/C N3564T minus 23957421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11721 rs1197675 SPTBN5 51332 15 39936888 NM_016642 NP_057726 C/G G2821R minus 1701611 1303 SEQUENOM CEPH CEPH (92) 92 0.35 92 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 11722 rs1197682 SPTBN5 51332 15 39958775 NM_016642 NP_057726 A/G H1053Y plus 1701618 1303 SEQUENOM CEPH CEPH (92) 92 0.02 100 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 11723 rs1197682 SPTBN5 51332 15 39958775 NM_016642 NP_057726 A/G H1053Y plus 3206029 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.18 100 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 11724 rs1197683 SPTBN5 51332 15 39958829 NM_016642 NP_057726 A/G C1035R plus 1701619 1303 SEQUENOM CEPH CEPH (92) 92 0.06 121 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 11725 rs1198849 ATP6V1C2 245973 2 10859491 NM_144583 NP_653184 A/G N143D plus 1706091 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 "ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2" 11726 rs1198849 ATP6V1C2 245973 2 10859491 NM_144583 NP_653184 A/G N143D plus 24644792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 "ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2" 11727 rs1198849 ATP6V1C2 245973 2 10859491 NM_144583 NP_653184 A/G N143D plus 24644792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 "ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2" 11728 rs1198849 ATP6V1C2 245973 2 10859491 NM_144583 NP_653184 A/G N143D plus 24644792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 "ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2" 11729 rs1200345 RPAP1 26015 15 39607008 NM_015540 NP_056355 C/T E506K plus 1712046 1303 SEQUENOM CEPH CEPH (92) 92 0.47 111 "by doubleHit,freq" 15q14 RNA polymerase II associated protein 1 11730 rs1201689 MAPKBP1 23005 15 39893210 XM_031706 XP_031706 C/G L313V plus 1716677 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 121 "HapMap,doubleHit,freq,cluster" 15q14 likely ortholog of mouse mitogen activated protein kinase binding proten 1 11731 rs1205193 CSRP2BP 57325 20 18091117 NM_020536 NP_065397 G/T V400G plus 8394832 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 by doubleHit 20p11.23 CSRP2 binding protein 11732 rs1205193 CSRP2BP 57325 20 18091117 NM_177926 NP_808779 G/T V272G plus 8394832 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 by doubleHit 20p11.23 CSRP2 binding protein 11733 rs1206038 EGFL4 1954 19 47554875 NM_001410 NP_001401 C/T K1299E minus 1733434 1303 SEQUENOM CEPH CEPH (92) 92 0.06 89 "by doubleHit,freq" 19q12 "EGF-like-domain, multiple 4" 11734 rs1208606 ZNF25 219749 10 38281073 NM_145011 NP_659448 A/C N453K plus 1743596 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 122 "HapMap,submitter,freq" 10p11.21 zinc finger protein 25 (KOX 19) 11735 rs1208606 ZNF25 219749 10 38281073 NM_145011 NP_659448 A/C N453K plus 1743596 1303 SEQUENOM CEPH CEPH (92) 92 0.06 122 "HapMap,submitter,freq" 10p11.21 zinc finger protein 25 (KOX 19) 11736 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 1747820 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11737 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 1747820 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11738 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 3219069 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.23 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11739 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 24513173 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11740 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 24513173 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.17 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11741 rs1209879 COMMD5 28991 8 146047512 NM_014066 NP_054785 A/G A6T minus 24513173 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,freq,cluster" 8q24-qter COMM domain containing 5 11742 rs1210795 SPTBN5 51332 15 39965447 NM_016642 NP_057726 C/T H433R plus 1750612 1303 SEQUENOM CEPH CEPH (92) 92 0.23 121 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 11743 rs1211554 HUS1B 135458 6 601143 NM_148959 NP_683762 A/C D268Y plus 1752893 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 11744 rs1211554 HUS1B 135458 6 601143 NM_148959 NP_683762 A/C D268Y plus 1752893 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 11745 rs1211554 HUS1B 135458 6 601143 NM_148959 NP_683762 A/C D268Y plus 23394992 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 11746 rs1211554 HUS1B 135458 6 601143 NM_148959 NP_683762 A/C D268Y plus 23394992 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 11747 rs1211554 HUS1B 135458 6 601143 NM_148959 NP_683762 A/C D268Y plus 23394992 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 11748 rs1212829 PHF3 23469 6 64480856 NM_015153 NP_055968 C/T L1805F plus 1756023 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 87 HapMap 6q12 PHD finger protein 3 11749 rs1212829 PHF3 23469 6 64480856 NM_015153 NP_055968 C/T L1805F plus 1756023 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 87 HapMap 6q12 PHD finger protein 3 11750 rs1212829 PHF3 23469 6 64480856 NM_015153 NP_055968 C/T L1805F plus 1756023 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 87 HapMap 6q12 PHD finger protein 3 11751 rs1212829 PHF3 23469 6 64480856 NM_015153 NP_055968 C/T L1805F plus 1756023 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 87 HapMap 6q12 PHD finger protein 3 11752 rs1212934 EGFL4 1954 19 47549550 NM_001410 NP_001401 C/T G756E minus 1756306 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 19q12 "EGF-like-domain, multiple 4" 11753 rs1216183 CNTN5 53942 11 99732093 NM_014361 NP_055176 A/T S1079T minus 5181131 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11754 rs1216183 CNTN5 53942 11 99732093 NM_014361 NP_055176 A/T S1079T minus 23659601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11755 rs1216183 CNTN5 53942 11 99732093 NM_014361 NP_055176 A/T S1079T minus 23659601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11756 rs1216183 CNTN5 53942 11 99732093 NM_014361 NP_055176 A/T S1079T minus 23659601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11757 rs1216183 CNTN5 53942 11 99732093 NM_175566 NP_780775 A/T S1005T minus 5181131 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11758 rs1216183 CNTN5 53942 11 99732093 NM_175566 NP_780775 A/T S1005T minus 23659601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11759 rs1216183 CNTN5 53942 11 99732093 NM_175566 NP_780775 A/T S1005T minus 23659601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11760 rs1216183 CNTN5 53942 11 99732093 NM_175566 NP_780775 A/T S1005T minus 23659601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 11q21-q22.2 contactin 5 11761 rs1217401 AP4B1 10717 1 114150993 NM_006594 NP_006585 A/G L480S plus 1775011 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 1p13.1 "adaptor-related protein complex 4, beta 1 subunit" 11762 rs1217401 AP4B1 10717 1 114150993 NM_006594 NP_006585 A/G L480S plus 23174982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 "by doubleHit,freq,cluster" 1p13.1 "adaptor-related protein complex 4, beta 1 subunit" 11763 rs1217401 AP4B1 10717 1 114150993 NM_006594 NP_006585 A/G L480S plus 23174982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 1p13.1 "adaptor-related protein complex 4, beta 1 subunit" 11764 rs1217401 AP4B1 10717 1 114150993 NM_006594 NP_006585 A/G L480S plus 23174982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 1p13.1 "adaptor-related protein complex 4, beta 1 subunit" 11765 rs1218762 OR2C1 4993 16 3345987 NM_012368 NP_036500 A/G G16S plus 24675252 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.32 123 by freq 16p13.3 "olfactory receptor, family 2, subfamily C, member 1" 11766 rs1218762 OR2C1 4993 16 3345987 NM_012368 NP_036500 A/G G16S plus 24675252 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.32 123 by freq 16p13.3 "olfactory receptor, family 2, subfamily C, member 1" 11767 rs1218762 OR2C1 4993 16 3345987 NM_012368 NP_036500 A/G G16S plus 24675252 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 34 0.12 123 by freq 16p13.3 "olfactory receptor, family 2, subfamily C, member 1" 11768 rs1218762 OR2C1 4993 16 3345987 NM_012368 NP_036500 A/G G16S plus 24799344 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 by freq 16p13.3 "olfactory receptor, family 2, subfamily C, member 1" 11769 rs1218763 OR2C1 4993 16 3346388 NM_012368 NP_036500 C/G C149W plus 5369081 1303 SEQUENOM CEPH CEPH (92) 92 0.04 121 "by cluster,freq" 16p13.3 "olfactory receptor, family 2, subfamily C, member 1" 11770 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 3240054 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11771 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 901 AFFY AfAm 12 0.17 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11772 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 902 AFFY Caucasian 24 0.04 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11773 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 903 AFFY Asian 12 0.17 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11774 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 904 AFFY CEPH 10 1 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11775 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 905 AFFY PDpanel 46 0.26 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11776 rs1218825 MTIF3 219402 13 26907920 NM_152912 NP_690876 C/G F243L plus 4084835 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by doubleHit,freq,cluster" 13q12.2 mitochondrial translational initiation factor 3 11777 rs1227051 CDH23 64072 10 73171562 NM_022124 NP_071407 C/T A1575T minus 23626293 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11778 rs1227051 CDH23 64072 10 73171562 NM_022124 NP_071407 C/T A1575T minus 23626293 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11779 rs1227051 CDH23 64072 10 73171562 NM_022124 NP_071407 C/T A1575T minus 23626293 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11780 rs1227065 CDH23 64072 10 73162085 NM_022124 NP_071407 C/T N1351D minus 24116348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11781 rs1227065 CDH23 64072 10 73162085 NM_022124 NP_071407 C/T N1351D minus 24116348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11782 rs1227065 CDH23 64072 10 73162085 NM_022124 NP_071407 C/T N1351D minus 24116348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 10q21-q22 cadherin-like 23 11783 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 1823175 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11784 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 5586189 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.19 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11785 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 5586189 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.11 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11786 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 5586189 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11787 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 5586189 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11788 rs1229984 ADH1B 125 4 100596497 NM_000668 NP_000659 A/G H48R minus 5586189 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.46 121 "by doubleHit,freq,cluster" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 11789 rs1230345 WISP3 8838 6 112489006 NM_003880 NP_003871 A/C Q56H minus 1824998 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11790 rs1230345 WISP3 8838 6 112489006 NM_003880 NP_003871 A/C Q56H minus 2985866 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.27 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11791 rs1230345 WISP3 8838 6 112489006 NM_003880 NP_003871 A/C Q56H minus 23391060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11792 rs1230345 WISP3 8838 6 112489006 NM_003880 NP_003871 A/C Q56H minus 23391060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11793 rs1230345 WISP3 8838 6 112489006 NM_003880 NP_003871 A/C Q56H minus 23391060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11794 rs1230345 WISP3 8838 6 112489006 NM_130396 NP_569080 A/C Q34H minus 1824998 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11795 rs1230345 WISP3 8838 6 112489006 NM_130396 NP_569080 A/C Q34H minus 2985866 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.27 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11796 rs1230345 WISP3 8838 6 112489006 NM_130396 NP_569080 A/C Q34H minus 23391060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11797 rs1230345 WISP3 8838 6 112489006 NM_130396 NP_569080 A/C Q34H minus 23391060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11798 rs1230345 WISP3 8838 6 112489006 NM_130396 NP_569080 A/C Q34H minus 23391060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11799 rs1230345 WISP3 8838 6 112489006 NM_198239 NP_937882 A/C Q74H minus 1824998 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11800 rs1230345 WISP3 8838 6 112489006 NM_198239 NP_937882 A/C Q74H minus 2985866 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.27 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11801 rs1230345 WISP3 8838 6 112489006 NM_198239 NP_937882 A/C Q74H minus 23391060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11802 rs1230345 WISP3 8838 6 112489006 NM_198239 NP_937882 A/C Q74H minus 23391060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11803 rs1230345 WISP3 8838 6 112489006 NM_198239 NP_937882 A/C Q74H minus 23391060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 WNT1 inducible signaling pathway protein 3 11804 rs1233387 OR2H3 7932 6 29663843 NM_007160 NP_009091 A/G A48V minus 3189865 738 YUSUKE JBIC-ALLELE Japanese (752) 1306 0.46 100 "by cluster,freq" 6p21.3 "olfactory receptor, family 2, subfamily H, member 3" 11805 rs1233428 ZNF233 353355 19 49470245 NM_181756 NP_861421 A/C K531T plus 1842601 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 19q13.32 zinc finger protein 233 11806 rs1233428 ZNF233 353355 19 49470245 NM_181756 NP_861421 A/C K531T plus 1842601 1303 SEQUENOM CEPH CEPH (92) 91 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.32 zinc finger protein 233 11807 rs1233428 ZNF233 353355 19 49470245 NM_181756 NP_861421 A/C K531T plus 24685339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.32 zinc finger protein 233 11808 rs1233428 ZNF233 353355 19 49470245 NM_181756 NP_861421 A/C K531T plus 24685339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "HapMap,doubleHit,freq,cluster" 19q13.32 zinc finger protein 233 11809 rs1233428 ZNF233 353355 19 49470245 NM_181756 NP_861421 A/C K531T plus 24685339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "HapMap,doubleHit,freq,cluster" 19q13.32 zinc finger protein 233 11810 rs1236913 PTGS1 5742 9 122213033 NM_000962 NP_000953 C/T W8R plus 5105620 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 0.01 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11811 rs1236913 PTGS1 5742 9 122213033 NM_000962 NP_000953 C/T W8R plus 5105620 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.04 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11812 rs1236913 PTGS1 5742 9 122213033 NM_000962 NP_000953 C/T W8R plus 14327570 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11813 rs1236913 PTGS1 5742 9 122213033 NM_000962 NP_000953 C/T W8R plus 14327570 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11814 rs1236913 PTGS1 5742 9 122213033 NM_000962 NP_000953 C/T W8R plus 14327570 1303 SEQUENOM CEPH CEPH (92) 92 0.24 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11815 rs1236913 PTGS1 5742 9 122213033 NM_080591 NP_542158 C/T W8R plus 5105620 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 0.01 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11816 rs1236913 PTGS1 5742 9 122213033 NM_080591 NP_542158 C/T W8R plus 5105620 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.04 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11817 rs1236913 PTGS1 5742 9 122213033 NM_080591 NP_542158 C/T W8R plus 14327570 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11818 rs1236913 PTGS1 5742 9 122213033 NM_080591 NP_542158 C/T W8R plus 14327570 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11819 rs1236913 PTGS1 5742 9 122213033 NM_080591 NP_542158 C/T W8R plus 14327570 1303 SEQUENOM CEPH CEPH (92) 92 0.24 121 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 11820 rs1243165 SERPINA2 390502 14 93914058 XM_372532 XP_372532 A/G A41T minus 1875350 1303 SEQUENOM CEPH CEPH (92) 92 0.39 119 "by doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2" 11821 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2599511 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11822 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2599511 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11823 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2599511 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11824 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2599511 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11825 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2846941 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11826 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 2846941 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11827 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 4934378 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11828 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 23815036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11829 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 23815036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11830 rs1243469 RNASE7 84659 14 20581337 NM_032572 NP_115961 C/T H116Y plus 23815036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11831 rs1247696 SVIL 6840 10 29862038 NM_021738 NP_068506 C/T V422I plus 2399318 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,submitter,cluster" 10p11.2 supervillin 11832 rs1247696 SVIL 6840 10 29862038 NM_021738 NP_068506 C/T V422I plus 24692591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,cluster" 10p11.2 supervillin 11833 rs1247696 SVIL 6840 10 29862038 NM_021738 NP_068506 C/T V422I plus 24692591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,submitter,cluster" 10p11.2 supervillin 11834 rs1247696 SVIL 6840 10 29862038 NM_021738 NP_068506 C/T V422I plus 24692591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,submitter,cluster" 10p11.2 supervillin 11835 rs1249958 PPP1R1A 5502 12 53262104 NM_006741 NP_006732 C/T E109G plus 3115035 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 12q13.13 "protein phosphatase 1, regulatory (inhibitor) subunit 1A" 11836 rs1250259 FN1 2335 2 216125988 NM_002026 NP_002017 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11837 rs1250259 FN1 2335 2 216125988 NM_054034 NP_473375 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11838 rs1250259 FN1 2335 2 216125988 NM_212474 NP_997639 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11839 rs1250259 FN1 2335 2 216125988 NM_212475 NP_997640 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11840 rs1250259 FN1 2335 2 216125988 NM_212476 NP_997641 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11841 rs1250259 FN1 2335 2 216125988 NM_212478 NP_997643 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11842 rs1250259 FN1 2335 2 216125988 NM_212482 NP_997647 A/T Q15L plus 3230627 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 2q34 fibronectin 1 11843 rs1256149 AKAP5 9495 14 64005473 NM_004857 NP_004848 A/G T203I minus 2764489 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 14q21-q24 A kinase (PRKA) anchor protein 5 11844 rs1256149 AKAP5 9495 14 64005473 NM_004857 NP_004848 A/G T203I minus 4928616 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 121 "by cluster,freq" 14q21-q24 A kinase (PRKA) anchor protein 5 11845 rs1260318 MPHOSPH9 10198 12 122170711 NM_022782 NP_073619 A/C A926D minus 1932503 1303 SEQUENOM CEPH CEPH (92) 92 1 92 by freq 12q24.31 M-phase phosphoprotein 9 11846 rs1260318 MPHOSPH9 10198 12 122170711 NM_022782 NP_073619 A/C A926D minus 2566779 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 92 by freq 12q24.31 M-phase phosphoprotein 9 11847 rs1260318 MPHOSPH9 10198 12 122170711 NM_022782 NP_073619 A/C A926D minus 2566779 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 20 0.1 92 by freq 12q24.31 M-phase phosphoprotein 9 11848 rs1260318 MPHOSPH9 10198 12 122170711 NM_022782 NP_073619 A/C A926D minus 2566779 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 92 by freq 12q24.31 M-phase phosphoprotein 9 11849 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 2468242 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11850 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 2468242 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11851 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 2468242 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11852 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 2468242 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 182 0.42 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11853 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 3236651 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.4 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11854 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 12568673 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11855 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 24292559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11856 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 24292559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11857 rs1260326 GCKR 2646 2 27642591 NM_001486 NP_001477 C/T L446P plus 24292559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 2p23 glucokinase (hexokinase 4) regulator 11858 rs1263872 RNASE7 84659 14 20581298 NM_032572 NP_115961 C/G A103P plus 2853722 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11859 rs1263872 RNASE7 84659 14 20581298 NM_032572 NP_115961 C/G A103P plus 4934377 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1468 0.08 121 "by doubleHit,freq,cluster" 14q11.2 "ribonuclease, RNase A family, 7" 11860 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 20422789 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11861 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 23310325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11862 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 23310325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11863 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 23310325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11864 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 24792925 1303 SEQUENOM CEPH CEPH (92) 184 0.45 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11865 rs1264457 HLA-E 3133 6 30566043 NM_005516 NP_005507 C/T G128R minus 24796251 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class I, E" 11866 rs1264895 ATP5F1 515 1 111711361 NM_001688 NP_001679 C/T T152M plus 1950756 1303 SEQUENOM CEPH CEPH (92) 92 0.26 119 "by doubleHit,freq" 1p13.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" 11867 rs1264895 ATP5F1 515 1 111711361 NM_001688 NP_001679 C/T T152M plus 2640033 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 12 0.5 119 "by doubleHit,freq" 1p13.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" 11868 rs1264895 ATP5F1 515 1 111711361 NM_001688 NP_001679 C/T T152M plus 2640033 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 119 "by doubleHit,freq" 1p13.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" 11869 rs1264895 ATP5F1 515 1 111711361 NM_001688 NP_001679 C/T T152M plus 2640033 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 119 "by doubleHit,freq" 1p13.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" 11870 rs1265096 PSORS1C1 170679 6 31214468 NM_014068 NP_054787 C/T E34K minus 7958929 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 11871 rs1265096 PSORS1C1 170679 6 31214468 NM_014068 NP_054787 C/T E34K minus 24796257 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 "by cluster,freq" 6p21.3 psoriasis susceptibility 1 candidate 1 11872 rs1265891 AKNA 80709 9 114189666 NM_030767 NP_110394 C/T Q1097R plus 1955329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 11873 rs1265891 AKNA 80709 9 114189666 NM_030767 NP_110394 C/T Q1097R plus 1955329 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 11874 rs1265891 AKNA 80709 9 114189666 NM_030767 NP_110394 C/T Q1097R plus 23526082 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 11875 rs1265891 AKNA 80709 9 114189666 NM_030767 NP_110394 C/T Q1097R plus 23526082 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 11876 rs1265891 AKNA 80709 9 114189666 NM_030767 NP_110394 C/T Q1097R plus 23526082 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 11877 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 1960183 771 TSC-CSHL SC_12_A CORIELL Asian (12) 14 0.07 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11878 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 1960183 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11879 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 1960183 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 22 0.05 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11880 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 1960183 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.02 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11881 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 1960183 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11882 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 23343863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11883 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 23343863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11884 rs1266787 EFHC1 114327 6 52451858 NM_018100 NP_060570 C/T M448T plus 23343863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 6p12.3 EF-hand domain (C-terminal) containing 1 11885 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 685 TSC-SANGER SC_96_C 324 0.01 87 HapMap 19q13.1 seven transmembrane domain protein 11886 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 686 TSC-SANGER SC_12_A CORIELL African American (12) 32 1 87 HapMap 19q13.1 seven transmembrane domain protein 11887 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 38 0.05 87 HapMap 19q13.1 seven transmembrane domain protein 11888 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 44 1 87 HapMap 19q13.1 seven transmembrane domain protein 11889 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 87 HapMap 19q13.1 seven transmembrane domain protein 11890 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 87 HapMap 19q13.1 seven transmembrane domain protein 11891 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 87 HapMap 19q13.1 seven transmembrane domain protein 11892 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 76 1 87 HapMap 19q13.1 seven transmembrane domain protein 11893 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 87 HapMap 19q13.1 seven transmembrane domain protein 11894 rs1269215 NIFIE14 10430 19 40729736 NM_032635 NP_116024 C/T Y132H plus 1971467 1303 SEQUENOM CEPH CEPH (92) 92 1 87 HapMap 19q13.1 seven transmembrane domain protein 11895 rs1274958 AXUD1 64651 3 39159963 NM_033027 NP_149016 A/G V453I minus 1987567 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.4 119 "by doubleHit,freq,cluster" 3p22 AXIN1 up-regulated 1 11896 rs1274958 AXUD1 64651 3 39159963 NM_033027 NP_149016 A/G V453I minus 1987567 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 119 "by doubleHit,freq,cluster" 3p22 AXIN1 up-regulated 1 11897 rs1274958 AXUD1 64651 3 39159963 NM_033027 NP_149016 A/G V453I minus 1987567 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.39 119 "by doubleHit,freq,cluster" 3p22 AXIN1 up-regulated 1 11898 rs1274958 AXUD1 64651 3 39159963 NM_033027 NP_149016 A/G V453I minus 1987567 1303 SEQUENOM CEPH CEPH (92) 92 0.22 119 "by doubleHit,freq,cluster" 3p22 AXIN1 up-regulated 1 11899 rs1274958 AXUD1 64651 3 39159963 NM_033027 NP_149016 A/G V453I minus 3236300 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 119 "by doubleHit,freq,cluster" 3p22 AXIN1 up-regulated 1 11900 rs1274971 STI2 199223 3 39136468 NM_145755 NP_665698 C/T E293K minus 24298945 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 3p21.33 TPR domain containing STI2 11901 rs1274971 STI2 199223 3 39136468 NM_145755 NP_665698 C/T E293K minus 24298945 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 3p21.33 TPR domain containing STI2 11902 rs1274971 STI2 199223 3 39136468 NM_145755 NP_665698 C/T E293K minus 24298945 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 3p21.33 TPR domain containing STI2 11903 rs1274972 STI2 199223 3 39136460 NM_145755 NP_665698 C/T R290K minus 1987613 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 3p21.33 TPR domain containing STI2 11904 rs1274972 STI2 199223 3 39136460 NM_145755 NP_665698 C/T R290K minus 1987613 1303 SEQUENOM CEPH CEPH (92) 92 0.06 121 "HapMap,doubleHit,submitter,freq,cluster" 3p21.33 TPR domain containing STI2 11905 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 1992250 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11906 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 1992250 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11907 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 1992250 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11908 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 1992250 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 47 0.5 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11909 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 24610781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11910 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 24610781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11911 rs1276286 MMP27 64066 11 102072417 NM_022122 NP_071405 A/T E266V minus 24610781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by doubleHit,submitter,freq" 11q24 matrix metalloproteinase 27 11912 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 2560952 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 1 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11913 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 2560952 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11914 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 2560952 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11915 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 23593505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11916 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 23593505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11917 rs1279138 DHTKD1 55526 10 12151096 NM_018706 NP_061176 C/T F20L plus 23593505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 10p14 dehydrogenase E1 and transketolase domain containing 1 11918 rs1281149 SH3TC1 54436 4 8347845 NM_018986 NP_061859 A/G R785C minus 2008258 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 121 "HapMap,doubleHit,freq,cluster" 4p16.1 SH3 domain and tetratricopeptide repeats 1 11919 rs1281149 SH3TC1 54436 4 8347845 NM_018986 NP_061859 A/G R785C minus 2008258 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,doubleHit,freq,cluster" 4p16.1 SH3 domain and tetratricopeptide repeats 1 11920 rs1281149 SH3TC1 54436 4 8347845 NM_018986 NP_061859 A/G R785C minus 4919531 738 YUSUKE JBIC-ALLELE Japanese (752) 1100 0.36 121 "HapMap,doubleHit,freq,cluster" 4p16.1 SH3 domain and tetratricopeptide repeats 1 11921 rs1281378 LAP1B 26092 1 176583731 NM_015602 NP_056417 C/T M146T plus 3241896 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.26 123 "by doubleHit,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 11922 rs1281378 LAP1B 26092 1 176583731 NM_015602 NP_056417 C/T M146T plus 5430228 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by doubleHit,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 11923 rs1281378 LAP1B 26092 1 176583731 NM_015602 NP_056417 C/T M146T plus 24631318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by doubleHit,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 11924 rs1281378 LAP1B 26092 1 176583731 NM_015602 NP_056417 C/T M146T plus 24631318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.39 123 "by doubleHit,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 11925 rs1281378 LAP1B 26092 1 176583731 NM_015602 NP_056417 C/T M146T plus 24631318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "by doubleHit,freq,cluster" 1q24.2 lamina-associated polypeptide 1B 11926 rs1284879 RASAL1 8437 12 112016201 NM_004658 NP_004649 C/T R321H plus 2372090 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23-q24 RAS protein activator like 1 (GAP1 like) 11927 rs1284879 RASAL1 8437 12 112016201 NM_004658 NP_004649 C/T R321H plus 3253270 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23-q24 RAS protein activator like 1 (GAP1 like) 11928 rs1284879 RASAL1 8437 12 112016201 NM_004658 NP_004649 C/T R321H plus 23952050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23-q24 RAS protein activator like 1 (GAP1 like) 11929 rs1284879 RASAL1 8437 12 112016201 NM_004658 NP_004649 C/T R321H plus 23952050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23-q24 RAS protein activator like 1 (GAP1 like) 11930 rs1284879 RASAL1 8437 12 112016201 NM_004658 NP_004649 C/T R321H plus 23952050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23-q24 RAS protein activator like 1 (GAP1 like) 11931 rs1286823 INADL 10207 1 61969057 NM_005799 NP_005790 A/C E362A plus 2026674 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11932 rs1286823 INADL 10207 1 61969057 NM_005799 NP_005790 A/C E362A plus 2026674 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11933 rs1286823 INADL 10207 1 61969057 NM_005799 NP_005790 A/C E362A plus 23655691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11934 rs1286823 INADL 10207 1 61969057 NM_005799 NP_005790 A/C E362A plus 23655691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11935 rs1286823 INADL 10207 1 61969057 NM_005799 NP_005790 A/C E362A plus 23655691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11936 rs1286823 INADL 10207 1 61969057 NM_176877 NP_795352 A/C E362A plus 2026674 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11937 rs1286823 INADL 10207 1 61969057 NM_176877 NP_795352 A/C E362A plus 2026674 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11938 rs1286823 INADL 10207 1 61969057 NM_176877 NP_795352 A/C E362A plus 23655691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11939 rs1286823 INADL 10207 1 61969057 NM_176877 NP_795352 A/C E362A plus 23655691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11940 rs1286823 INADL 10207 1 61969057 NM_176877 NP_795352 A/C E362A plus 23655691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11941 rs1286823 INADL 10207 1 61969057 NM_176878 NP_795353 A/C E362A plus 2026674 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11942 rs1286823 INADL 10207 1 61969057 NM_176878 NP_795353 A/C E362A plus 2026674 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11943 rs1286823 INADL 10207 1 61969057 NM_176878 NP_795353 A/C E362A plus 23655691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11944 rs1286823 INADL 10207 1 61969057 NM_176878 NP_795353 A/C E362A plus 23655691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11945 rs1286823 INADL 10207 1 61969057 NM_176878 NP_795353 A/C E362A plus 23655691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,submitter,freq,cluster" 1p32.1 InaD-like protein 11946 rs1287637 NPHP4 261734 1 5869428 NM_015102 NP_055917 A/T L939X minus 2821971 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 120 "HapMap,freq,cluster" 1p36.22 nephronophthisis 4 11947 rs1287637 NPHP4 261734 1 5869428 NM_015102 NP_055917 A/T L939X minus 3242381 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.18 120 "HapMap,freq,cluster" 1p36.22 nephronophthisis 4 11948 rs1288386 PODN 127435 1 53247499 NM_153703 NP_714914 A/G R32H plus 23838427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1p32.3 podocan 11949 rs1288386 PODN 127435 1 53247499 NM_153703 NP_714914 A/G R32H plus 23838427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1p32.3 podocan 11950 rs1288386 PODN 127435 1 53247499 NM_153703 NP_714914 A/G R32H plus 23838427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 1p32.3 podocan 11951 rs1288401 SLC1A7 6512 1 53265775 NM_006671 NP_006662 C/T Q537R plus 3254004 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.31 123 "by doubleHit,freq,cluster" 1p32.3 "solute carrier family 1 (glutamate transporter), member 7" 11952 rs1288401 SLC1A7 6512 1 53265775 NM_006671 NP_006662 C/T Q537R plus 16419968 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by doubleHit,freq,cluster" 1p32.3 "solute carrier family 1 (glutamate transporter), member 7" 11953 rs1288401 SLC1A7 6512 1 53265775 NM_006671 NP_006662 C/T Q537R plus 23838508 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 1p32.3 "solute carrier family 1 (glutamate transporter), member 7" 11954 rs1288401 SLC1A7 6512 1 53265775 NM_006671 NP_006662 C/T Q537R plus 23838508 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1p32.3 "solute carrier family 1 (glutamate transporter), member 7" 11955 rs1288401 SLC1A7 6512 1 53265775 NM_006671 NP_006662 C/T Q537R plus 23838508 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p32.3 "solute carrier family 1 (glutamate transporter), member 7" 11956 rs1288775 GATM 2628 15 43448970 NM_001482 NP_001473 A/T Q110H plus 2033575 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by submitter,freq,cluster" 15q15.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) 11957 rs1288775 GATM 2628 15 43448970 NM_001482 NP_001473 A/T Q110H plus 4945931 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.14 123 "by submitter,freq,cluster" 15q15.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) 11958 rs1288775 GATM 2628 15 43448970 NM_001482 NP_001473 A/T Q110H plus 24468497 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq,cluster" 15q15.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) 11959 rs1288775 GATM 2628 15 43448970 NM_001482 NP_001473 A/T Q110H plus 24468497 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by submitter,freq,cluster" 15q15.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) 11960 rs1288775 GATM 2628 15 43448970 NM_001482 NP_001473 A/T Q110H plus 24468497 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 15q15.1 glycine amidinotransferase (L-arginine:glycine amidinotransferase) 11961 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 2773640 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11962 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 2773640 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 10 0.4 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11963 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 3190781 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.2 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11964 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 24265559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11965 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 24265559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11966 rs1289658 TRIM45 80263 1 117368130 NM_025188 NP_079464 A/G M496T plus 24265559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 1p12 tripartite motif-containing 45 11967 rs1292053 TUBD1 51174 17 55318319 NM_016261 NP_057345 C/T M76T minus 2045825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 17q23.2 "tubulin, delta 1" 11968 rs1292053 TUBD1 51174 17 55318319 NM_016261 NP_057345 C/T M76T minus 2045825 1303 SEQUENOM CEPH CEPH (92) 92 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 17q23.2 "tubulin, delta 1" 11969 rs1316300 SLC15A2 6565 3 123129976 NM_021082 NP_066568 C/T P409S plus 2075297 1303 SEQUENOM CEPH CEPH (92) 46 0.5 120 "by doubleHit,freq,cluster" 3q21.1 "solute carrier family 15 (H+/peptide transporter), member 2" 11970 rs1318196 ZC3HDC3 23144 8 144691485 NM_015117 NP_055932 A/G S399G minus 2085849 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 11971 rs1318196 ZC3HDC3 23144 8 144691485 NM_015117 NP_055932 A/G S399G minus 4936236 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.23 120 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 11972 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 2086473 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11973 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 2086473 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.41 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11974 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 2086473 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11975 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 2086473 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11976 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 2086473 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11977 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 5003954 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.2 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11978 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 23365363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11979 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 23365363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11980 rs1318648 ESPL1 9700 12 51956812 NM_012291 NP_036423 G/T S614R minus 23365363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 11981 rs1319080 IGSF9 57549 1 156710632 NM_020789 NP_065840 G/T P1101T plus 3242483 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.21 123 "by cluster,freq" 1q22-q23 "immunoglobulin superfamily, member 9" 11982 rs1319080 IGSF9 57549 1 156710632 NM_020789 NP_065840 G/T P1101T plus 23837949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22-q23 "immunoglobulin superfamily, member 9" 11983 rs1319080 IGSF9 57549 1 156710632 NM_020789 NP_065840 G/T P1101T plus 23837949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q22-q23 "immunoglobulin superfamily, member 9" 11984 rs1319080 IGSF9 57549 1 156710632 NM_020789 NP_065840 G/T P1101T plus 23837949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 1q22-q23 "immunoglobulin superfamily, member 9" 11985 rs1320308 S100Z 170591 5 76207008 NM_130772 NP_570128 G/T E23A minus 2088622 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,submitter,freq" 5q14.1 S100Z protein 11986 rs1320308 S100Z 170591 5 76207008 NM_130772 NP_570128 G/T E23A minus 24189841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq" 5q14.1 S100Z protein 11987 rs1320308 S100Z 170591 5 76207008 NM_130772 NP_570128 G/T E23A minus 24189841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq" 5q14.1 S100Z protein 11988 rs1320308 S100Z 170591 5 76207008 NM_130772 NP_570128 G/T E23A minus 24189841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq" 5q14.1 S100Z protein 11989 rs1326331 SEC15L1 54536 10 94685597 NM_019053 NP_061926 C/T T349I plus 2096839 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "by doubleHit,freq,cluster" 10q23.33 SEC15-like 1 (S. cerevisiae) 11990 rs1326331 SEC15L1 54536 10 94685597 NM_019053 NP_061926 C/T T349I plus 24648107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q23.33 SEC15-like 1 (S. cerevisiae) 11991 rs1326331 SEC15L1 54536 10 94685597 NM_019053 NP_061926 C/T T349I plus 24648107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 10q23.33 SEC15-like 1 (S. cerevisiae) 11992 rs1326331 SEC15L1 54536 10 94685597 NM_019053 NP_061926 C/T T349I plus 24648107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q23.33 SEC15-like 1 (S. cerevisiae) 11993 rs1328361 GUCY1B2 2974 13 50492742 NM_004129 NP_004120 G/T N316H plus 2099509 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 11994 rs1328361 GUCY1B2 2974 13 50492742 NM_004129 NP_004120 G/T N316H plus 2099509 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 11995 rs1328361 GUCY1B2 2974 13 50492742 NM_004129 NP_004120 G/T N316H plus 4934333 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 121 "HapMap,doubleHit,submitter,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 11996 rs1334811 TEK 7010 9 27180655 NM_000459 NP_000450 A/G V486I plus 2108192 638 TSC-CSHL TSC_42_AA TSC African American (42) 80 0.25 88 "HapMap,submitter,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 11997 rs1334811 TEK 7010 9 27180655 NM_000459 NP_000450 A/G V486I plus 2108192 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.07 88 "HapMap,submitter,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 11998 rs1334811 TEK 7010 9 27180655 NM_000459 NP_000450 A/G V486I plus 2108192 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.01 88 "HapMap,submitter,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 11999 rs1334811 TEK 7010 9 27180655 NM_000459 NP_000450 A/G V486I plus 2108192 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 88 "HapMap,submitter,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 12000 rs1334811 TEK 7010 9 27180655 NM_000459 NP_000450 A/G V486I plus 2108192 1303 SEQUENOM CEPH CEPH (92) 92 0.05 88 "HapMap,submitter,freq" 9p21 "TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)" 12001 rs1336900 NOHMA 84072 1 147492106 NM_032132 NP_115508 A/G T267I plus 24276499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 1q21.3 HORMA domain containing protein 12002 rs1336900 NOHMA 84072 1 147492106 NM_032132 NP_115508 A/G T267I plus 24276499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 1q21.3 HORMA domain containing protein 12003 rs1336900 NOHMA 84072 1 147492106 NM_032132 NP_115508 A/G T267I plus 24276499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1q21.3 HORMA domain containing protein 12004 rs1338314 SPATA6 54558 1 48537375 NM_019073 NP_061946 C/T R333W minus 2113122 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq" 1p33 spermatogenesis associated 6 12005 rs1338314 SPATA6 54558 1 48537375 NM_019073 NP_061946 C/T R333W minus 2113122 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq" 1p33 spermatogenesis associated 6 12006 rs1338314 SPATA6 54558 1 48537375 NM_019073 NP_061946 C/T R333W minus 24249165 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq" 1p33 spermatogenesis associated 6 12007 rs1338314 SPATA6 54558 1 48537375 NM_019073 NP_061946 C/T R333W minus 24249165 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq" 1p33 spermatogenesis associated 6 12008 rs1338314 SPATA6 54558 1 48537375 NM_019073 NP_061946 C/T R333W minus 24249165 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 1p33 spermatogenesis associated 6 12009 rs1339847 BIA2 25893 1 244365335 NM_015431 NP_056246 A/G V322I plus 2115148 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 56 0.11 123 "by doubleHit,freq,cluster" 1q44 BIA2 12010 rs1339847 BIA2 25893 1 244365335 NM_015431 NP_056246 A/G V322I plus 2115148 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.17 123 "by doubleHit,freq,cluster" 1q44 BIA2 12011 rs1339847 BIA2 25893 1 244365335 NM_015431 NP_056246 A/G V322I plus 2115148 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 56 0.04 123 "by doubleHit,freq,cluster" 1q44 BIA2 12012 rs1339847 BIA2 25893 1 244365335 NM_015431 NP_056246 A/G V322I plus 2115148 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 1q44 BIA2 12013 rs1340623 AIM1 202 6 107066692 XM_166300 XP_166300 C/G P551R plus 2116200 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 12014 rs1340623 AIM1 202 6 107066692 XM_166300 XP_166300 C/G P551R plus 23324612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.13 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 12015 rs1340623 AIM1 202 6 107066692 XM_166300 XP_166300 C/G P551R plus 23324612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.34 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 12016 rs1340623 AIM1 202 6 107066692 XM_166300 XP_166300 C/G P551R plus 23324612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 12017 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 2116743 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12018 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 2116743 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12019 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 7987409 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.43 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12020 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 7987409 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.43 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12021 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 7987409 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12022 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 8328180 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12023 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 24207643 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12024 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 24207643 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12025 rs1341023 BPI 671 20 36366074 NM_001725 NP_001716 C/T A16V plus 24207643 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 12026 rs1341044 OR1N2 138882 9 122395733 XM_071151 XP_071151 G/T V244G plus 23722501 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12027 rs1341044 OR1N2 138882 9 122395733 XM_071151 XP_071151 G/T V244G plus 23722501 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12028 rs1341044 OR1N2 138882 9 122395733 XM_071151 XP_071151 G/T V244G plus 23722501 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12029 rs1342440 C8A 731 1 57095336 NM_000562 NP_000553 C/G E561Q minus 2118727 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by doubleHit,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 12030 rs1342440 C8A 731 1 57095336 NM_000562 NP_000553 C/G E561Q minus 23688633 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.05 123 "by doubleHit,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 12031 rs1342440 C8A 731 1 57095336 NM_000562 NP_000553 C/G E561Q minus 23688633 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.29 123 "by doubleHit,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 12032 rs1342440 C8A 731 1 57095336 NM_000562 NP_000553 C/G E561Q minus 23688633 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.14 123 "by doubleHit,freq,cluster" 1p32 "complement component 8, alpha polypeptide" 12033 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.04 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12034 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.14 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12035 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 901 AFFY AfAm 12 0.33 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12036 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 902 AFFY Caucasian 24 0.29 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12037 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 903 AFFY Asian 12 0.08 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12038 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 904 AFFY CEPH 5 0.5 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12039 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 905 AFFY PDpanel 48 0.21 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12040 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 2118976 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12041 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 24426907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12042 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 24426907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12043 rs1342642 IL20RA 53832 6 137364906 NM_014432 NP_055247 C/T L382F minus 24426907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12044 rs1344642 STK36 27148 2 219380767 NM_015690 NP_056505 A/G R583Q plus 2121686 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 12045 rs1344642 STK36 27148 2 219380767 NM_015690 NP_056505 A/G R583Q plus 3250189 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 12046 rs1344642 STK36 27148 2 219380767 NM_015690 NP_056505 A/G R583Q plus 24658679 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 12047 rs1344642 STK36 27148 2 219380767 NM_015690 NP_056505 A/G R583Q plus 24658679 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 12048 rs1344642 STK36 27148 2 219380767 NM_015690 NP_056505 A/G R583Q plus 24658679 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 12049 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 901 AFFY AfAm 40 0.2 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12050 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 902 AFFY Caucasian 20 0.5 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12051 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 903 AFFY Asian 40 0.4 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12052 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 904 AFFY CEPH 42 0.48 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12053 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 905 AFFY PDpanel 48 0.42 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12054 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 906 AFFY APE 2 1 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12055 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 2122958 1303 SEQUENOM CEPH CEPH (92) 92 0.4 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12056 rs1345658 ZNF30 90075 19 40126846 NM_194325 NP_919306 C/T R298K minus 5013471 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.42 120 "by doubleHit,freq,cluster" 19q13.13 zinc finger protein 30 (KOX 28) 12057 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.08 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12058 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12059 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12060 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.22 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12061 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12062 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 2123516 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12063 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 3177102 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.17 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12064 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 4318955 506 NCBI NIHPDR NIHPDR 168 0.19 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12065 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 5586956 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.21 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12066 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 5586956 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.29 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12067 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 5586956 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12068 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 5586956 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12069 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 5586956 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12070 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 16359638 693 EGP_SNPS PDR90 NIHPDR 180 0.19 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12071 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 24474353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12072 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 24474353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12073 rs1346044 WRN 7486 8 31144196 NM_000553 NP_000544 C/T C1367R plus 24474353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 12074 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12075 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 901 AFFY AfAm 12 0.08 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12076 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 902 AFFY Caucasian 24 0.04 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12077 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 903 AFFY Asian 12 1 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12078 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 904 AFFY CEPH 12 1 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12079 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 905 AFFY PDpanel 48 0.08 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12080 rs1351419 NYD-SP26 85438 4 71382148 NM_033122 NP_149113 C/T T211I plus 2130889 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "HapMap,doubleHit,submitter,freq,cluster" 4q13.3 testis development protein NYD-SP26 12081 rs1352714 CDHJ 54798 4 155601209 NM_017639 NP_060109 A/G N897S minus 2132651 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 4q31.3 protocadherin protein CDHJ 12082 rs1352714 CDHJ 54798 4 155601209 NM_017639 NP_060109 A/G N897S minus 23688700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 4q31.3 protocadherin protein CDHJ 12083 rs1352714 CDHJ 54798 4 155601209 NM_017639 NP_060109 A/G N897S minus 23688700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 4q31.3 protocadherin protein CDHJ 12084 rs1352714 CDHJ 54798 4 155601209 NM_017639 NP_060109 A/G N897S minus 23688700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 4q31.3 protocadherin protein CDHJ 12085 rs1353776 AMOTL2 51421 3 135560168 NM_016201 NP_057285 C/G E732D minus 2134155 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.12 120 "by doubleHit,freq,cluster" 3q21-q22 angiomotin like 2 12086 rs1353776 AMOTL2 51421 3 135560168 NM_016201 NP_057285 C/G E732D minus 2134155 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.39 120 "by doubleHit,freq,cluster" 3q21-q22 angiomotin like 2 12087 rs1353776 AMOTL2 51421 3 135560168 NM_016201 NP_057285 C/G E732D minus 2134155 640 TSC-CSHL TSC_42_A TSC Asian (42) 78 0.06 120 "by doubleHit,freq,cluster" 3q21-q22 angiomotin like 2 12088 rs1353776 AMOTL2 51421 3 135560168 NM_016201 NP_057285 C/G E732D minus 2134155 1303 SEQUENOM CEPH CEPH (92) 92 0.06 120 "by doubleHit,freq,cluster" 3q21-q22 angiomotin like 2 12089 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.1 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12090 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.21 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12091 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 16 0.13 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12092 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.2 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12093 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12094 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 2142109 1303 SEQUENOM CEPH CEPH (92) 92 0.35 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12095 rs1359590 FRMPD1 22844 9 37719786 NM_014907 NP_055722 A/G A225V minus 3210070 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 111 "HapMap,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 12096 rs1359836 SYCP2 10388 20 57903984 NM_014258 NP_055073 C/T P523L minus 2142458 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 114 by doubleHit 20q13.33 synaptonemal complex protein 2 12097 rs1359836 SYCP2 10388 20 57903984 NM_014258 NP_055073 C/T P523L minus 2142458 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 114 by doubleHit 20q13.33 synaptonemal complex protein 2 12098 rs1359836 SYCP2 10388 20 57903984 NM_014258 NP_055073 C/T P523L minus 2142458 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 114 by doubleHit 20q13.33 synaptonemal complex protein 2 12099 rs1359836 SYCP2 10388 20 57903984 NM_014258 NP_055073 C/T P523L minus 8389426 1303 SEQUENOM CEPH CEPH (92) 92 1 114 by doubleHit 20q13.33 synaptonemal complex protein 2 12100 rs1361040 PKD1-like 79932 1 35582869 NM_024874 NP_079150 C/G Q837H minus 2144139 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 1p34.2 polycystic kidney disease 1-like 12101 rs1361040 PKD1-like 79932 1 35582869 NM_182686 NP_872628 C/G Q837H minus 2144139 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 1p34.2 polycystic kidney disease 1-like 12102 rs1363422 NMUR2 56923 5 151752010 NM_020167 NP_064552 C/T A395T plus 2147374 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 5q33.1 neuromedin U receptor 2 12103 rs1366257 ZNF534 147658 19 57633352 XM_496320 XP_496320 A/G G289E plus 2151289 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.2 121 "by cluster,freq" 19q13.41 zinc finger protein 534 12104 rs1366257 ZNF534 147658 19 57633352 XM_496320 XP_496320 A/G G289E plus 2151289 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.05 121 "by cluster,freq" 19q13.41 zinc finger protein 534 12105 rs1366257 ZNF534 147658 19 57633352 XM_496320 XP_496320 A/G G289E plus 2151289 640 TSC-CSHL TSC_42_A TSC Asian (42) 76 0.24 121 "by cluster,freq" 19q13.41 zinc finger protein 534 12106 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 2152528 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12107 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 2152528 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12108 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 12675269 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.19 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12109 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 12675269 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.27 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12110 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 12675269 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12111 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 12675269 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12112 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 12675269 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12113 rs1367117 APOB 338 2 21175552 NM_000384 NP_000375 A/G T98I plus 20419035 889 PHARMGKB_PARC PA128275074 94 0.23 121 "HapMap,doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 12114 rs1372085 ADPRTL1 143 13 23906588 NM_006437 NP_006428 C/T I1564T minus 2159221 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 12115 rs1374570 OR6Q1 219952 11 57555947 XM_166910 XP_166910 C/G G316A plus 10688710 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 116 "HapMap,doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 6, subfamily Q, member 1" 12116 rs1374570 OR6Q1 219952 11 57555947 XM_166910 XP_166910 C/G G316A plus 10688710 1303 SEQUENOM CEPH CEPH (92) 92 0.37 116 "HapMap,doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 6, subfamily Q, member 1" 12117 rs1377210 AGXT2L1 64850 4 110031720 NM_031279 NP_112569 C/T S185P minus 2166131 1303 SEQUENOM CEPH CEPH (92) 92 0.15 108 "by doubleHit,freq,cluster" 4q25 alanine-glyoxylate aminotransferase 2-like 1 12118 rs1377210 AGXT2L1 64850 4 110031720 NM_031279 NP_112569 C/T S185P minus 4919616 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.47 108 "by doubleHit,freq,cluster" 4q25 alanine-glyoxylate aminotransferase 2-like 1 12119 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 2170131 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12120 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 2170131 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12121 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 2170131 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12122 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 2170131 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12123 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 2170131 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12124 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 23985178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12125 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 23985178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12126 rs1380154 APG-1 22824 4 129080647 NM_014278 NP_055093 C/T L211S plus 23985178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 4q28 heat shock protein (hsp110 family) 12127 rs1380657 MYCBPAP 84073 17 45953784 NM_032133 NP_115509 A/G A387T plus 2170826 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by cluster,freq" 17q21.33 MYCBP associated protein 12128 rs1380866 DSG3 1830 18 27309955 NM_001944 NP_001935 A/G T912A plus 2171078 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 1 121 "HapMap,doubleHit,cluster" 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 12129 rs1380866 DSG3 1830 18 27309955 NM_001944 NP_001935 A/G T912A plus 2171078 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 121 "HapMap,doubleHit,cluster" 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 12130 rs1380866 DSG3 1830 18 27309955 NM_001944 NP_001935 A/G T912A plus 2171078 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 121 "HapMap,doubleHit,cluster" 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 12131 rs1380866 DSG3 1830 18 27309955 NM_001944 NP_001935 A/G T912A plus 6247052 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 12132 rs1380866 DSG3 1830 18 27309955 NM_001944 NP_001935 A/G T912A plus 6247052 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,doubleHit,cluster" 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 12133 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 2171343 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.35 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12134 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 2171343 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12135 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 2171343 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12136 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 4479809 506 NCBI NIHPDR NIHPDR 174 0.28 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12137 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 24358433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12138 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 24358433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12139 rs1381057 POLQ 10721 3 122637664 NM_006596 NP_006587 C/T Q2648R plus 24358433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12140 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 2171343 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.35 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12141 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 2171343 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12142 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 2171343 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.05 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12143 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 4479809 506 NCBI NIHPDR NIHPDR 174 0.28 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12144 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 24358433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12145 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 24358433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12146 rs1381057 POLQ 10721 3 122637664 NM_199420 NP_955452 C/T Q2515R plus 24358433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 12147 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.23 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12148 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12149 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.42 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12150 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.31 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12151 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12152 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 2174229 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12153 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 24391146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.34 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12154 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 24391146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12155 rs1383180 EVC 2121 4 5903514 NM_014556 NP_055371 C/T R576Q minus 24391146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12156 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.23 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12157 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12158 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.42 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12159 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.31 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12160 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12161 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 2174229 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12162 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 24391146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.34 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12163 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 24391146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12164 rs1383180 EVC 2121 4 5903514 NM_153717 NP_714928 C/T R576Q minus 24391146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "HapMap,submitter,freq,cluster" 4p16 Ellis van Creveld syndrome 12165 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 2184725 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12166 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 2184725 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12167 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 3205142 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12168 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 24649237 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12169 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 24649237 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12170 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 24649237 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12171 rs1390938 SLC18A1 6570 8 20080993 NM_003053 NP_003044 A/G I136T plus 28447304 914 HG_BONN_CNS_SNPS EURO96 European 128 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 12172 rs1390963 FBXO16 157574 8 28360688 NM_172366 NP_758954 C/T M254I plus 10489286 1303 SEQUENOM CEPH CEPH (92) 92 0.3 116 "by doubleHit,freq,cluster" 8p21.1 F-box protein 16 12173 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 901 AFFY AfAm 12 0.17 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12174 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 902 AFFY Caucasian 24 0.17 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12175 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 903 AFFY Asian 10 0.3 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12176 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12177 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 905 AFFY PDpanel 44 0.39 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12178 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 2190733 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12179 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 23501326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12180 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 23501326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12181 rs1395266 SERPINB11 89778 18 59541312 NM_080475 NP_536723 C/T T293I plus 23501326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12182 rs1395267 SERPINB11 89778 18 59541341 NM_080475 NP_536723 C/T S303P plus 2190734 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12183 rs1395267 SERPINB11 89778 18 59541341 NM_080475 NP_536723 C/T S303P plus 4930962 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.09 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12184 rs1395267 SERPINB11 89778 18 59541341 NM_080475 NP_536723 C/T S303P plus 23501338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12185 rs1395267 SERPINB11 89778 18 59541341 NM_080475 NP_536723 C/T S303P plus 23501338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12186 rs1395267 SERPINB11 89778 18 59541341 NM_080475 NP_536723 C/T S303P plus 23501338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12187 rs1395268 SERPINB11 89778 18 59528559 NM_080475 NP_536723 A/C E51A plus 2190735 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12188 rs1395268 SERPINB11 89778 18 59528559 NM_080475 NP_536723 A/C E51A plus 23500897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12189 rs1395268 SERPINB11 89778 18 59528559 NM_080475 NP_536723 A/C E51A plus 23500897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12190 rs1395268 SERPINB11 89778 18 59528559 NM_080475 NP_536723 A/C E51A plus 23500897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12191 rs1395388 TGM4 7047 3 44923678 NM_003241 NP_003232 C/G E437Q minus 2190904 1303 SEQUENOM CEPH CEPH (92) 92 0.06 111 by freq 3p22-p21.33 transglutaminase 4 (prostate) 12192 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12193 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12194 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 902 AFFY Caucasian 24 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12195 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 903 AFFY Asian 10 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12196 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 904 AFFY CEPH 8 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12197 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 905 AFFY PDpanel 40 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12198 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 2194121 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12199 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 23898403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12200 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 23898403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12201 rs1397706 LY75 4065 2 160554512 NM_002349 NP_002340 A/G D692N minus 23898403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 12202 rs1402467 SULT1C2 27233 2 108453326 NM_006588 NP_006579 C/G D5E plus 2200602 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 120 "HapMap,doubleHit,submitter,freq,cluster" 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 2" 12203 rs1402467 SULT1C2 27233 2 108453326 NM_006588 NP_006579 C/G D5E plus 2200602 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 "HapMap,doubleHit,submitter,freq,cluster" 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 2" 12204 rs1402467 SULT1C2 27233 2 108453326 NM_006588 NP_006579 C/G D5E plus 16341276 1166 PHARMGKB_PPII PA128747821 120 0.5 120 "HapMap,doubleHit,submitter,freq,cluster" 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 2" 12205 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 2201286 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.03 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12206 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 2201286 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.09 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12207 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 2201286 640 TSC-CSHL TSC_42_A TSC Asian (42) 70 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12208 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 6243706 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12209 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 6243706 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12210 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 24492449 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12211 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 24492449 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12212 rs1402954 FBXO3 26273 11 33733910 NM_012175 NP_036307 C/T V221I plus 24492449 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12213 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 2201286 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.03 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12214 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 2201286 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.09 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12215 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 2201286 640 TSC-CSHL TSC_42_A TSC Asian (42) 70 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12216 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 6243706 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12217 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 6243706 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12218 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 24492449 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12219 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 24492449 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12220 rs1402954 FBXO3 26273 11 33733910 NM_033406 NP_208385 C/T V221I plus 24492449 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 11p13 F-box protein 3 12221 rs1403812 OR13F1 138805 9 104346399 XM_071099 XP_071099 C/T M101V minus 2202504 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily F, member 1" 12222 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12223 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 901 AFFY AfAm 12 0.08 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12224 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 902 AFFY Caucasian 24 0.13 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12225 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 903 AFFY Asian 12 0.25 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12226 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 904 AFFY CEPH 12 0.25 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12227 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 905 AFFY PDpanel 48 0.15 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12228 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 2207868 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12229 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 23930610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12230 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 23930610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12231 rs1407856 JMJD2C 23081 9 7036901 NM_015061 NP_055876 C/G Q767E minus 23930610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,freq,cluster" 9p24-p23 jumonji domain containing 2C 12232 rs1409136 LIPL1 142910 10 90346578 XM_084377 XP_084377 A/G I210V plus 24541148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 1" 12233 rs1409136 LIPL1 142910 10 90346578 XM_084377 XP_084377 A/G I210V plus 24541148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 1" 12234 rs1409136 LIPL1 142910 10 90346578 XM_084377 XP_084377 A/G I210V plus 24541148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q23.31 "lipase-like, ab-hydrolase domain containing 1" 12235 rs1409986 PTGER3 5733 1 71043519 NM_000957 NP_000948 C/T S375P minus 2210718 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 12236 rs1409986 PTGER3 5733 1 71043519 NM_000957 NP_000948 C/T S375P minus 2210718 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.1 121 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 12237 rs1409986 PTGER3 5733 1 71043519 NM_000957 NP_000948 C/T S375P minus 2210718 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 12238 rs1409986 PTGER3 5733 1 71043519 NM_000957 NP_000948 C/T S375P minus 2210718 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 by freq 1p31.2 prostaglandin E receptor 3 (subtype EP3) 12239 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 2212431 901 AFFY AfAm 12 0.17 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12240 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 2212431 902 AFFY Caucasian 22 0.32 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12241 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 2212431 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12242 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 2212431 904 AFFY CEPH 12 0.25 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12243 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 2212431 905 AFFY PDpanel 46 0.39 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12244 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 24655561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12245 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 24655561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12246 rs1411272 OR1N2 138882 9 122395904 XM_071151 XP_071151 C/T T301M plus 24655561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 12247 rs1416829 IER5 51278 1 177790275 NM_016545 NP_057629 C/G R194G plus 2219990 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 1q25.1 immediate early response 5 12248 rs1416840 NOR1 127700 1 36557555 NM_145047 NP_659484 A/G I229T plus 2220003 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 12249 rs1416840 NOR1 127700 1 36557555 NM_145047 NP_659484 A/G I229T plus 2220003 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "HapMap,submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 12250 rs1416840 NOR1 127700 1 36557555 NM_145047 NP_659484 A/G I229T plus 23849797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 12251 rs1416840 NOR1 127700 1 36557555 NM_145047 NP_659484 A/G I229T plus 23849797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 12252 rs1416840 NOR1 127700 1 36557555 NM_145047 NP_659484 A/G I229T plus 23849797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 12253 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 2220600 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12254 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 2220600 902 AFFY Caucasian 24 0.04 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12255 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 2220600 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12256 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 2220600 904 AFFY CEPH 12 0.17 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12257 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 2220600 905 AFFY PDpanel 48 0.13 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12258 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 23930617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12259 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 23930617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12260 rs1417290 JMJD2C 23081 9 7036917 NM_015061 NP_055876 A/G K772R plus 23930617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 9p24-p23 jumonji domain containing 2C 12261 rs1417635 RBM20 282996 10 112562448 XM_291671 XP_291671 C/G W821S minus 23516663 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,cluster" 10q25.3 RNA binding motif protein 20 12262 rs1417635 RBM20 282996 10 112562448 XM_291671 XP_291671 C/G W821S minus 23516663 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 "by doubleHit,cluster" 10q25.3 RNA binding motif protein 20 12263 rs1417635 RBM20 282996 10 112562448 XM_291671 XP_291671 C/G W821S minus 23516663 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,cluster" 10q25.3 RNA binding motif protein 20 12264 rs1418843 OR10R2 343406 1 155263455 XM_291548 XP_291548 C/T L466F plus 2222759 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 12265 rs1418843 OR10R2 343406 1 155263455 XM_291548 XP_291548 C/T L466F plus 2222759 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 12266 rs1418843 OR10R2 343406 1 155263455 XM_291548 XP_291548 C/T L466F plus 24280201 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 12267 rs1418843 OR10R2 343406 1 155263455 XM_291548 XP_291548 C/T L466F plus 24280201 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.38 123 "HapMap,doubleHit,submitter,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 12268 rs1418843 OR10R2 343406 1 155263455 XM_291548 XP_291548 C/T L466F plus 24280201 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 12269 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 2228040 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.25 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12270 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 2228040 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12271 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 2228040 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.36 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12272 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 2228040 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 76 0.3 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12273 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 2228040 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12274 rs1422645 NDP52 10241 17 44294657 NM_005831 NP_005822 C/G P389A minus 3225588 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.18 121 "HapMap,doubleHit,freq,cluster" 17q21.33 nuclear domain 10 protein 12275 rs1422698 ANKRD31 256006 5 74478888 XM_293911 XP_293911 A/G D702N minus 10207840 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13.3 ankyrin repeat domain 31 12276 rs1422698 ANKRD31 256006 5 74478888 XM_293911 XP_293911 A/G D702N minus 24188002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13.3 ankyrin repeat domain 31 12277 rs1422698 ANKRD31 256006 5 74478888 XM_293911 XP_293911 A/G D702N minus 24188002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13.3 ankyrin repeat domain 31 12278 rs1422698 ANKRD31 256006 5 74478888 XM_293911 XP_293911 A/G D702N minus 24188002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13.3 ankyrin repeat domain 31 12279 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 2228226 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.36 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12280 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 2228226 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.35 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12281 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 2228226 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.24 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12282 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 2228226 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12283 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 3213717 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.15 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12284 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 15357301 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.38 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12285 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 15357301 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.3 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12286 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 15357301 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12287 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 23475698 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12288 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 23475698 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12289 rs1422795 ADAM19 8728 5 156868942 NM_033274 NP_150377 A/G S284G minus 23475698 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 12290 rs1426310 DSG1 1828 18 27152292 NM_001942 NP_001933 A/G M11V plus 2233235 1303 SEQUENOM CEPH CEPH (92) 92 0.35 88 "by doubleHit,freq" 18q12.1 desmoglein 1 12291 rs1426654 SLC24A5 283652 15 46213776 NM_205850 NP_995322 A/G T111A plus 2233714 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 "HapMap,doubleHit,cluster" 15q15.2 "solute carrier family 24, member 5" 12292 rs1428180 ZNF534 147658 19 57632983 XM_496320 XP_496320 C/T F166S plus 24204270 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 534 12293 rs1428180 ZNF534 147658 19 57632983 XM_496320 XP_496320 C/T F166S plus 24204270 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 534 12294 rs1428180 ZNF534 147658 19 57632983 XM_496320 XP_496320 C/T F166S plus 24204270 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 534 12295 rs1429077 ZC3HDC7 29066 16 11783704 NM_014153 NP_054872 A/G N3S minus 2237299 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 16p13-p12 zinc finger CCCH type domain containing 7 12296 rs1429077 ZC3HDC7 29066 16 11783704 NM_014153 NP_054872 A/G N3S minus 23528438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 16p13-p12 zinc finger CCCH type domain containing 7 12297 rs1429077 ZC3HDC7 29066 16 11783704 NM_014153 NP_054872 A/G N3S minus 23528438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,freq,cluster" 16p13-p12 zinc finger CCCH type domain containing 7 12298 rs1429077 ZC3HDC7 29066 16 11783704 NM_014153 NP_054872 A/G N3S minus 23528438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 16p13-p12 zinc finger CCCH type domain containing 7 12299 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 2237380 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12300 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 2237380 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12301 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 4918020 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.32 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12302 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 23292110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12303 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 23292110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12304 rs1429148 PECR 55825 2 216749185 NM_018441 NP_060911 C/T E149K plus 23292110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 2q35 peroxisomal trans-2-enoyl-CoA reductase 12305 rs1432862 FAT2 2196 5 150926966 NM_001447 NP_001438 A/G R574C plus 2242324 1303 SEQUENOM CEPH CEPH (92) 92 0.33 119 "by doubleHit,submitter,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 12306 rs1442138 MMRN1 22915 4 91173472 NM_007351 NP_031377 C/T T58A minus 2254712 1303 SEQUENOM CEPH CEPH (92) 92 0.05 88 by freq 4q22 multimerin 1 12307 rs1443547 SLC6A5 9152 11 20579551 NM_004211 NP_004202 A/G G102S plus 2256621 1303 SEQUENOM CEPH CEPH (92) 92 0.46 120 by freq 11p15.2-p15.1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" 12308 rs1443548 SLC6A5 9152 11 20579618 NM_004211 NP_004202 C/T F124S plus 2256622 1303 SEQUENOM CEPH CEPH (92) 92 0.11 116 "by doubleHit,freq,cluster" 11p15.2-p15.1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" 12309 rs1445404 EYA1 2138 8 72429637 NM_000503 NP_000494 C/G P20A plus 2259199 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.3 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12310 rs1445404 EYA1 2138 8 72429637 NM_000503 NP_000494 C/G P20A plus 2259199 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12311 rs1445404 EYA1 2138 8 72429637 NM_000503 NP_000494 C/G P20A plus 2259199 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12312 rs1445404 EYA1 2138 8 72429637 NM_000503 NP_000494 C/G P20A plus 2259199 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12313 rs1445404 EYA1 2138 8 72429637 NM_000503 NP_000494 C/G P20A plus 2259199 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12314 rs1445404 EYA1 2138 8 72429637 NM_172058 NP_742055 C/G P20A plus 2259199 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.3 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12315 rs1445404 EYA1 2138 8 72429637 NM_172058 NP_742055 C/G P20A plus 2259199 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12316 rs1445404 EYA1 2138 8 72429637 NM_172058 NP_742055 C/G P20A plus 2259199 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12317 rs1445404 EYA1 2138 8 72429637 NM_172058 NP_742055 C/G P20A plus 2259199 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12318 rs1445404 EYA1 2138 8 72429637 NM_172058 NP_742055 C/G P20A plus 2259199 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12319 rs1445404 EYA1 2138 8 72429637 NM_172059 NP_742056 C/G P20A plus 2259199 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.3 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12320 rs1445404 EYA1 2138 8 72429637 NM_172059 NP_742056 C/G P20A plus 2259199 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12321 rs1445404 EYA1 2138 8 72429637 NM_172059 NP_742056 C/G P20A plus 2259199 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12322 rs1445404 EYA1 2138 8 72429637 NM_172059 NP_742056 C/G P20A plus 2259199 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12323 rs1445404 EYA1 2138 8 72429637 NM_172059 NP_742056 C/G P20A plus 2259199 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 8q13.3 eyes absent homolog 1 (Drosophila) 12324 rs1445845 ZNF354C 30832 5 178439696 NM_014594 NP_055409 C/T E553K minus 2259844 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35 zinc finger protein 354C 12325 rs1445845 ZNF354C 30832 5 178439696 NM_014594 NP_055409 C/T E553K minus 2259844 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35 zinc finger protein 354C 12326 rs1445845 ZNF354C 30832 5 178439696 NM_014594 NP_055409 C/T E553K minus 24376849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35 zinc finger protein 354C 12327 rs1445845 ZNF354C 30832 5 178439696 NM_014594 NP_055409 C/T E553K minus 24376849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35 zinc finger protein 354C 12328 rs1445845 ZNF354C 30832 5 178439696 NM_014594 NP_055409 C/T E553K minus 24376849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 5q35 zinc finger protein 354C 12329 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 901 AFFY AfAm 10 0.2 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12330 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 902 AFFY Caucasian 11 0.5 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12331 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12332 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 904 AFFY CEPH 10 0.3 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12333 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 905 AFFY PDpanel 48 0.33 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12334 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 2259845 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12335 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 24376836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12336 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 24376836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12337 rs1445846 ZNF354C 30832 5 178439675 NM_014594 NP_055409 A/G F546L minus 24376836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 5q35 zinc finger protein 354C 12338 rs1451568 RNF17 56163 13 24265282 NM_031277 NP_112567 A/C K346N plus 2267498 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12339 rs1451568 RNF17 56163 13 24265282 NM_031277 NP_112567 A/C K346N plus 23437833 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12340 rs1451568 RNF17 56163 13 24265282 NM_031277 NP_112567 A/C K346N plus 23437833 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12341 rs1451568 RNF17 56163 13 24265282 NM_031277 NP_112567 A/C K346N plus 23437833 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12342 rs1451568 RNF17 56163 13 24265282 NM_031994 NP_114383 A/C K346N plus 2267498 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12343 rs1451568 RNF17 56163 13 24265282 NM_031994 NP_114383 A/C K346N plus 23437833 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12344 rs1451568 RNF17 56163 13 24265282 NM_031994 NP_114383 A/C K346N plus 23437833 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12345 rs1451568 RNF17 56163 13 24265282 NM_031994 NP_114383 A/C K346N plus 23437833 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 13q12.13 ring finger protein 17 12346 rs1453541 OR4D6 219983 11 58981797 XM_166900 XP_166900 A/G M263T minus 2270121 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,submitter,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12347 rs1453541 OR4D6 219983 11 58981797 XM_166900 XP_166900 A/G M263T minus 24563670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,submitter,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12348 rs1453541 OR4D6 219983 11 58981797 XM_166900 XP_166900 A/G M263T minus 24563670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,submitter,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12349 rs1453541 OR4D6 219983 11 58981797 XM_166900 XP_166900 A/G M263T minus 24563670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12350 rs1453542 OR4D6 219983 11 58981461 XM_166900 XP_166900 C/G S151T minus 24563661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12351 rs1453542 OR4D6 219983 11 58981461 XM_166900 XP_166900 C/G S151T minus 24563661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12352 rs1453542 OR4D6 219983 11 58981461 XM_166900 XP_166900 C/G S151T minus 24563661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12353 rs1453543 OR4D6 219983 11 58981296 XM_166900 XP_166900 C/T D96G minus 23599253 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12354 rs1453543 OR4D6 219983 11 58981296 XM_166900 XP_166900 C/T D96G minus 23599253 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by submitter,freq,cluster" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12355 rs1453543 OR4D6 219983 11 58981296 XM_166900 XP_166900 C/T D96G minus 23599253 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq,cluster" 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 12356 rs1455555 SERPINB5 5268 18 59321762 NM_002639 NP_002630 C/T I319V minus 2272884 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.47 111 "by submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 12357 rs1455555 SERPINB5 5268 18 59321762 NM_002639 NP_002630 C/T I319V minus 2272884 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.45 111 "by submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 12358 rs1455555 SERPINB5 5268 18 59321762 NM_002639 NP_002630 C/T I319V minus 2272884 1303 SEQUENOM CEPH CEPH (92) 46 0.5 111 "by submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 12359 rs1455555 SERPINB5 5268 18 59321762 NM_002639 NP_002630 C/T I319V minus 4930955 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 111 "by submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 12360 rs1456235 SPTBN5 51332 15 39936764 NM_016642 NP_057726 C/T Q2862R plus 2273782 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 12361 rs1456235 SPTBN5 51332 15 39936764 NM_016642 NP_057726 C/T Q2862R plus 24389341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 12362 rs1456235 SPTBN5 51332 15 39936764 NM_016642 NP_057726 C/T Q2862R plus 24389341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 12363 rs1456235 SPTBN5 51332 15 39936764 NM_016642 NP_057726 C/T Q2862R plus 24389341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 12364 rs1459101 OR4C16 219428 11 55096228 XM_166868 XP_166868 A/G Q17X minus 2277757 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 111 "HapMap,submitter,freq" 11q12.1 "olfactory receptor, family 4, subfamily C, member 16" 12365 rs1459675 ZNF318 24149 6 43414324 NM_014345 NP_055160 A/G V1617A plus 5181745 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 6pter-p12.1 zinc finger protein 318 12366 rs1459675 ZNF318 24149 6 43414324 NM_014345 NP_055160 A/G V1617A plus 23675563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6pter-p12.1 zinc finger protein 318 12367 rs1459675 ZNF318 24149 6 43414324 NM_014345 NP_055160 A/G V1617A plus 23675563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 6pter-p12.1 zinc finger protein 318 12368 rs1459675 ZNF318 24149 6 43414324 NM_014345 NP_055160 A/G V1617A plus 23675563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6pter-p12.1 zinc finger protein 318 12369 rs1462983 OR56B4 196335 11 6086413 XM_115092 XP_115092 C/T P277S plus 2282949 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.48 121 "HapMap,doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 56, subfamily B, member 4" 12370 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12371 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12372 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 22 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12373 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12374 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12375 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 2285117 1303 SEQUENOM CEPH CEPH (92) 92 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12376 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 3207300 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12377 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 24684709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12378 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 24684709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12379 rs1464890 NIPA 51530 7 129258263 NM_016478 NP_057562 C/T T250A plus 24684709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 7q32.3 nuclear interacting partner of anaplastic lymphoma kinase (ALK) 12380 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.18 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12381 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 58 0.26 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12382 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12383 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 322 0.44 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12384 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12385 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 2286110 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12386 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 3176391 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.41 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12387 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 3230535 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.26 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12388 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 24689523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12389 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 24689523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12390 rs1465789 ZNF132 7691 19 63637868 NM_003433 NP_003424 C/T P252L minus 24689523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 132 (clone pHZ-12) 12391 rs1466684 P2RY13 53829 3 152529006 NM_023914 NP_076403 C/T T158M minus 2287099 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12392 rs1466684 P2RY13 53829 3 152529006 NM_023914 NP_076403 C/T T158M minus 24620715 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12393 rs1466684 P2RY13 53829 3 152529006 NM_023914 NP_076403 C/T T158M minus 24620715 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12394 rs1466684 P2RY13 53829 3 152529006 NM_023914 NP_076403 C/T T158M minus 24620715 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12395 rs1466684 P2RY13 53829 3 152529006 NM_176894 NP_795713 C/T T158M minus 2287099 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12396 rs1466684 P2RY13 53829 3 152529006 NM_176894 NP_795713 C/T T158M minus 24620715 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12397 rs1466684 P2RY13 53829 3 152529006 NM_176894 NP_795713 C/T T158M minus 24620715 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12398 rs1466684 P2RY13 53829 3 152529006 NM_176894 NP_795713 C/T T158M minus 24620715 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 3q24 G protein-coupled receptor 86 12399 rs1466685 GMPPB 29925 3 49735043 NM_013334 NP_037466 A/G Q184R minus 23203602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12400 rs1466685 GMPPB 29925 3 49735043 NM_013334 NP_037466 A/G Q184R minus 23203602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12401 rs1466685 GMPPB 29925 3 49735043 NM_013334 NP_037466 A/G Q184R minus 23203602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12402 rs1466685 GMPPB 29925 3 49735043 NM_021971 NP_068806 A/G Q184R minus 23203602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12403 rs1466685 GMPPB 29925 3 49735043 NM_021971 NP_068806 A/G Q184R minus 23203602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12404 rs1466685 GMPPB 29925 3 49735043 NM_021971 NP_068806 A/G Q184R minus 23203602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.31 GDP-mannose pyrophosphorylase B 12405 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12406 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 901 AFFY AfAm 12 1 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12407 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 902 AFFY Caucasian 24 0.13 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12408 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 903 AFFY Asian 12 1 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12409 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 904 AFFY CEPH 12 1 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12410 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 905 AFFY PDpanel 48 0.08 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12411 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 2288053 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12412 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 24544256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12413 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 24544256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12414 rs1467558 CD44 960 11 35186249 NM_000610 NP_000601 A/G I479T minus 24544256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 11p13 CD44 antigen (homing function and Indian blood group system) 12415 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 2289133 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12416 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 2289133 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12417 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 3248400 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12418 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 23910927 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12419 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 23910927 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12420 rs1468542 SACM1L 22908 3 45754140 NM_014016 NP_054735 A/T Y434F minus 23910927 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 3p21.3 SAC1 suppressor of actin mutations 1-like (yeast) 12421 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 2289148 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12422 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 2289148 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12423 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 3227082 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12424 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 24205395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12425 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 24205395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12426 rs1468556 GALNT8 26290 12 4743424 NM_017417 NP_059113 G/T V515F plus 24205395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 12427 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 2289734 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.47 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12428 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 2289734 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.18 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12429 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 2289734 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12430 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 24076476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12431 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 24076476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12432 rs1469087 ZNF135 7694 19 63264791 NM_003436 NP_003427 C/T G22D minus 24076476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 135 (clone pHZ-17) 12433 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 2289780 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.3 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12434 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 2289780 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12435 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 2289780 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.3 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12436 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 2289780 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12437 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 3249727 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.49 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12438 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 24118471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12439 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 24118471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12440 rs1469122 DC13 56942 16 79567574 NM_020188 NP_064573 C/T V53I plus 24118471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 16q23.2 DC13 protein 12441 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 2291210 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.29 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12442 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 2291210 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.44 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12443 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 2291210 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12444 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 24345045 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12445 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 24345045 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12446 rs1470414 PASK 23178 2 241797486 NM_015148 NP_055963 A/G V250I minus 24345045 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 12447 rs1470859 PKD1L1 168507 7 47686819 NM_138295 NP_612152 A/G K1272E minus 2291696 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "HapMap,doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 12448 rs1470859 PKD1L1 168507 7 47686819 NM_138295 NP_612152 A/G K1272E minus 2291696 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.04 121 "HapMap,doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 12449 rs1470859 PKD1L1 168507 7 47686819 NM_138295 NP_612152 A/G K1272E minus 2291696 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "HapMap,doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 12450 rs1470859 PKD1L1 168507 7 47686819 NM_138295 NP_612152 A/G K1272E minus 2291696 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 121 "HapMap,doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 12451 rs1475732 DKFZp434P0216 256158 9 130310134 XM_175125 XP_175125 C/G Q2358E minus 2297099 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.42 120 "HapMap,doubleHit,freq,cluster" 9q34.2 hemicentin-2 12452 rs1475732 DKFZp434P0216 256158 9 130310134 XM_175125 XP_175125 C/G Q2358E minus 2297099 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.18 120 "HapMap,doubleHit,freq,cluster" 9q34.2 hemicentin-2 12453 rs1475732 DKFZp434P0216 256158 9 130310134 XM_175125 XP_175125 C/G Q2358E minus 2297099 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 120 "HapMap,doubleHit,freq,cluster" 9q34.2 hemicentin-2 12454 rs1475732 DKFZp434P0216 256158 9 130310134 XM_175125 XP_175125 C/G Q2358E minus 2297099 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.15 120 "HapMap,doubleHit,freq,cluster" 9q34.2 hemicentin-2 12455 rs1475732 DKFZp434P0216 256158 9 130310134 XM_175125 XP_175125 C/G Q2358E minus 2297099 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 120 "HapMap,doubleHit,freq,cluster" 9q34.2 hemicentin-2 12456 rs1476387 SMPD2 6610 6 109871228 NM_003080 NP_003071 G/T R265S plus 2297824 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.44 121 "by doubleHit,freq,cluster" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 12457 rs1476387 SMPD2 6610 6 109871228 NM_003080 NP_003071 G/T R265S plus 2297824 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.05 121 "by doubleHit,freq,cluster" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 12458 rs1476387 SMPD2 6610 6 109871228 NM_003080 NP_003071 G/T R265S plus 2297824 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 121 "by doubleHit,freq,cluster" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 12459 rs1476387 SMPD2 6610 6 109871228 NM_003080 NP_003071 G/T R265S plus 2297824 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.42 121 "by doubleHit,freq,cluster" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 12460 rs1476387 SMPD2 6610 6 109871228 NM_003080 NP_003071 G/T R265S plus 2297824 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "by doubleHit,freq,cluster" 6q21 "sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" 12461 rs1476703 ASK 10926 7 87159059 NM_006716 NP_006707 A/T Y112N minus 2298167 1303 SEQUENOM CEPH CEPH (92) 92 0.4 88 by freq 7q21.3 activator of S phase kinase 12462 rs1476858 OR1B1 347169 9 122470580 XM_294534 XP_294534 A/C C263W plus 5169074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 121 "HapMap,doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12463 rs1476859 OR1B1 347169 9 122470681 XM_294534 XP_294534 C/T A230T plus 2298335 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12464 rs1476859 OR1B1 347169 9 122470681 XM_294534 XP_294534 C/T A230T plus 23946302 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12465 rs1476859 OR1B1 347169 9 122470681 XM_294534 XP_294534 C/T A230T plus 23946302 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12466 rs1476859 OR1B1 347169 9 122470681 XM_294534 XP_294534 C/T A230T plus 23946302 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12467 rs1476860 OR1B1 347169 9 122470795 XM_294534 XP_294534 A/G R192X plus 2298336 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12468 rs1476860 OR1B1 347169 9 122470795 XM_294534 XP_294534 A/G R192X plus 23946322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12469 rs1476860 OR1B1 347169 9 122470795 XM_294534 XP_294534 A/G R192X plus 23946322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12470 rs1476860 OR1B1 347169 9 122470795 XM_294534 XP_294534 A/G R192X plus 23946322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12471 rs1478453 RGNEF 64283 5 73243128 XM_371755 XP_371755 A/T H1604Q minus 2300347 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 12472 rs1478453 RGNEF 64283 5 73243128 XM_371755 XP_371755 A/T H1604Q minus 24671796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 12473 rs1478453 RGNEF 64283 5 73243128 XM_371755 XP_371755 A/T H1604Q minus 24671796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 12474 rs1478453 RGNEF 64283 5 73243128 XM_371755 XP_371755 A/T H1604Q minus 24671796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 12475 rs1482804 OR5P2 120065 11 7775047 NM_153444 NP_703145 C/T G7R plus 23810028 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 5, subfamily P, member 2" 12476 rs1482804 OR5P2 120065 11 7775047 NM_153444 NP_703145 C/T G7R plus 23810028 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 5, subfamily P, member 2" 12477 rs1482804 OR5P2 120065 11 7775047 NM_153444 NP_703145 C/T G7R plus 23810028 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 5, subfamily P, member 2" 12478 rs1484873 SLC14A2 8170 18 41460983 NM_007163 NP_009094 A/G I132V plus 24036041 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 12479 rs1484873 SLC14A2 8170 18 41460983 NM_007163 NP_009094 A/G I132V plus 24036041 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,submitter,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 12480 rs1484873 SLC14A2 8170 18 41460983 NM_007163 NP_009094 A/G I132V plus 24036041 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 12481 rs1488690 NYD-SP20 84690 17 3299081 NM_032598 NP_115987 C/T V148M plus 2314130 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 17p13.3 testes development-related NYD-SP20 12482 rs1488690 NYD-SP20 84690 17 3299081 NM_032598 NP_115987 C/T V148M plus 2314130 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 17p13.3 testes development-related NYD-SP20 12483 rs1488690 NYD-SP20 84690 17 3299081 NM_032598 NP_115987 C/T V148M plus 24212922 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 17p13.3 testes development-related NYD-SP20 12484 rs1488690 NYD-SP20 84690 17 3299081 NM_032598 NP_115987 C/T V148M plus 24212922 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 17p13.3 testes development-related NYD-SP20 12485 rs1488690 NYD-SP20 84690 17 3299081 NM_032598 NP_115987 C/T V148M plus 24212922 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 17p13.3 testes development-related NYD-SP20 12486 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 2322286 771 TSC-CSHL SC_12_A CORIELL Asian (12) 10 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12487 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 2322286 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12488 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 2322286 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 7 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12489 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 2322286 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12490 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 3172789 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12491 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 3205021 738 YUSUKE JBIC-ALLELE Japanese (752) 1308 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12492 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 12675491 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12493 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 12675491 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12494 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 12675491 776 SNP500CANCER AFR1 African / African-American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12495 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 12675491 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12496 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 12675491 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12497 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 16336709 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12498 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 16336709 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12499 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 22366715 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12500 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 22366715 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12501 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 24186977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12502 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 24186977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12503 rs1494555 IL7R 3575 5 35906947 NM_002185 NP_002176 C/T V138I minus 24186977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13 interleukin 7 receptor 12504 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 2322289 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12505 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 16336640 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.21 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12506 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 16336640 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 1 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12507 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 24186943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12508 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 24186943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12509 rs1494558 IL7R 3575 5 35896825 NM_002185 NP_002176 A/G I66T minus 24186943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 12510 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 2322942 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12511 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 2322942 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12512 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 4919327 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12513 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 24236342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12514 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 24236342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12515 rs1494961 HEL308 113510 4 84731659 NM_133636 NP_598375 C/T V306I plus 24236342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 4q21.3 DNA helicase HEL308 12516 rs1496856 PIWIL1 9271 12 129355909 NM_004764 NP_004755 C/T R144K minus 2325540 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 12q24.33 piwi-like 1 (Drosophila) 12517 rs1496856 PIWIL1 9271 12 129355909 NM_004764 NP_004755 C/T R144K minus 2325540 1303 SEQUENOM CEPH CEPH (92) 92 1 88 HapMap 12q24.33 piwi-like 1 (Drosophila) 12518 rs1498467 OR51M1 390059 11 5367510 XM_372354 XP_372354 G/T H183Q plus 2327710 1303 SEQUENOM CEPH CEPH (92) 92 0.02 121 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 12519 rs1498468 OR51M1 390059 11 5367607 XM_372354 XP_372354 C/T L216F plus 2327711 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 12520 rs1498469 OR51M1 390059 11 5367815 XM_372354 XP_372354 C/T I285T plus 2327712 1303 SEQUENOM CEPH CEPH (92) 92 0.32 121 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 12521 rs1498486 OR51I1 390063 11 5418567 XM_372356 XP_372356 A/C A252S plus 2327734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 12522 rs1498486 OR51I1 390063 11 5418567 XM_372356 XP_372356 A/C A252S plus 2327734 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 12523 rs1498486 OR51I1 390063 11 5418567 XM_372356 XP_372356 A/C A252S plus 24532058 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 12524 rs1498486 OR51I1 390063 11 5418567 XM_372356 XP_372356 A/C A252S plus 24532058 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 12525 rs1498486 OR51I1 390063 11 5418567 XM_372356 XP_372356 A/C A252S plus 24532058 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 12526 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 3234330 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12527 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 5188119 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12528 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 5188119 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12529 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 23981994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12530 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 23981994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12531 rs1499280 PELO 53918 5 52132646 NM_015946 NP_057030 G/T L221M minus 23981994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 5q11.2 pelota homolog (Drosophila) 12532 rs1503185 PTPRJ 5795 11 48103198 NM_002843 NP_002834 C/T R326Q minus 2334363 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12533 rs1503185 PTPRJ 5795 11 48103198 NM_002843 NP_002834 C/T R326Q minus 3176749 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.22 123 "by doubleHit,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12534 rs1503185 PTPRJ 5795 11 48103198 NM_002843 NP_002834 C/T R326Q minus 23783912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12535 rs1503185 PTPRJ 5795 11 48103198 NM_002843 NP_002834 C/T R326Q minus 23783912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12536 rs1503185 PTPRJ 5795 11 48103198 NM_002843 NP_002834 C/T R326Q minus 23783912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12537 rs1506418 SERPINB11 89778 18 59538292 NM_080475 NP_536723 A/G A181T plus 2338756 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12538 rs1506418 SERPINB11 89778 18 59538292 NM_080475 NP_536723 A/G A181T plus 23501122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12539 rs1506418 SERPINB11 89778 18 59538292 NM_080475 NP_536723 A/G A181T plus 23501122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12540 rs1506418 SERPINB11 89778 18 59538292 NM_080475 NP_536723 A/G A181T plus 23501122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12541 rs1506419 SERPINB11 89778 18 59538313 NM_080475 NP_536723 A/T W188R plus 2338757 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12542 rs1506419 SERPINB11 89778 18 59538313 NM_080475 NP_536723 A/T W188R plus 2338757 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12543 rs1506419 SERPINB11 89778 18 59538313 NM_080475 NP_536723 A/T W188R plus 23501136 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12544 rs1506419 SERPINB11 89778 18 59538313 NM_080475 NP_536723 A/T W188R plus 23501136 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12545 rs1506419 SERPINB11 89778 18 59538313 NM_080475 NP_536723 A/T W188R plus 23501136 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 12546 rs1509123 FBXO39 162517 17 6624602 NM_153230 NP_694962 A/G L231F minus 24699389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 17p13.2 F-box protein 39 12547 rs1509123 FBXO39 162517 17 6624602 NM_153230 NP_694962 A/G L231F minus 24699389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 17p13.2 F-box protein 39 12548 rs1509123 FBXO39 162517 17 6624602 NM_153230 NP_694962 A/G L231F minus 24699389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 17p13.2 F-box protein 39 12549 rs1510765 ALS2CR19 117583 2 205737909 NM_152526 NP_689739 C/T L166P plus 2344819 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 119 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 12550 rs1510765 ALS2CR19 117583 2 205737909 NM_205863 NP_995585 C/T L166P plus 2344819 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 119 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 12551 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12552 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12553 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 902 AFFY Caucasian 22 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12554 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 903 AFFY Asian 12 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12555 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 904 AFFY CEPH 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12556 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 2351236 905 AFFY PDpanel 42 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12557 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 23968680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12558 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 23968680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12559 rs1515441 NYD-SP12 83893 3 174317992 NM_031955 NP_114161 A/G E78K minus 23968680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12560 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12561 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 901 AFFY AfAm 12 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12562 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 902 AFFY Caucasian 22 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12563 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 903 AFFY Asian 10 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12564 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 904 AFFY CEPH 10 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12565 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 2351237 905 AFFY PDpanel 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12566 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 23968673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12567 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 23968673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12568 rs1515442 NYD-SP12 83893 3 174317827 NM_031955 NP_114161 A/G M133V minus 23968673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 3q26.32 NYD-SP12 protein 12569 rs1516446 COL3A1 1281 2 189700927 NM_000090 NP_000081 G/T H1353Q plus 2352565 1303 SEQUENOM CEPH CEPH (92) 92 0.07 121 "by cluster,freq" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 12570 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 2354220 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.05 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12571 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 2354220 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12572 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 2354220 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.21 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12573 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 2354220 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12574 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 24665572 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12575 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 24665572 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12576 rs1517618 SLCO3A1 28232 15 90448649 NM_013272 NP_037404 C/G E294D minus 24665572 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q26 "solute carrier organic anion transporter family, member 3A1" 12577 rs1521808 ABCB11 8647 2 169609235 NM_003742 NP_003733 A/G E1186K minus 2359844 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 1 120 "by cluster,freq" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 12578 rs1521808 ABCB11 8647 2 169609235 NM_003742 NP_003733 A/G E1186K minus 2359844 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.01 120 "by cluster,freq" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 12579 rs1521808 ABCB11 8647 2 169609235 NM_003742 NP_003733 A/G E1186K minus 2359844 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 12580 rs1521808 ABCB11 8647 2 169609235 NM_003742 NP_003733 A/G E1186K minus 16339469 1136 PHARMGKB_PMT PA129840880 494 0.01 120 "by cluster,freq" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 12581 rs1523678 OR13C5 138799 9 104440406 XM_071093 XP_071093 A/G I282V minus 2362542 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 5" 12582 rs1527482 SEMA3C 10512 7 80072181 NM_006379 NP_006370 A/G V337M minus 2367564 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by cluster,freq" 7q21-q31 "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C" 12583 rs1527482 SEMA3C 10512 7 80072181 NM_006379 NP_006370 A/G V337M minus 4993502 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 900 0.11 123 "by cluster,freq" 7q21-q31 "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C" 12584 rs1527482 SEMA3C 10512 7 80072181 NM_006379 NP_006370 A/G V337M minus 23957067 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q21-q31 "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C" 12585 rs1527482 SEMA3C 10512 7 80072181 NM_006379 NP_006370 A/G V337M minus 23957067 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q21-q31 "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C" 12586 rs1527482 SEMA3C 10512 7 80072181 NM_006379 NP_006370 A/G V337M minus 23957067 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 7q21-q31 "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C" 12587 rs1529927 SLC12A3 6559 16 55462088 NM_000339 NP_000330 C/G A264G plus 2370605 1303 SEQUENOM CEPH CEPH (92) 92 0.11 121 "by doubleHit,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 12588 rs1529979 PIP5K3 200576 2 209016588 NM_015040 NP_055855 G/T Q1183K minus 2370668 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 12589 rs1529979 PIP5K3 200576 2 209016588 NM_015040 NP_055855 G/T Q1183K minus 23215811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 12590 rs1529979 PIP5K3 200576 2 209016588 NM_015040 NP_055855 G/T Q1183K minus 23215811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by cluster,freq" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 12591 rs1529979 PIP5K3 200576 2 209016588 NM_015040 NP_055855 G/T Q1183K minus 23215811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 12592 rs1530496 DNAH5 1767 5 13984340 NM_001369 NP_001360 A/G G24E minus 2371246 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12593 rs1530496 DNAH5 1767 5 13984340 NM_001369 NP_001360 A/G G24E minus 2371246 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12594 rs1530496 DNAH5 1767 5 13984340 NM_001369 NP_001360 A/G G24E minus 23982636 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12595 rs1530496 DNAH5 1767 5 13984340 NM_001369 NP_001360 A/G G24E minus 23982636 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12596 rs1530496 DNAH5 1767 5 13984340 NM_001369 NP_001360 A/G G24E minus 23982636 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12597 rs1530498 DNAH5 1767 5 13955220 NM_001369 NP_001360 A/G T558A minus 2371248 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12598 rs1530498 DNAH5 1767 5 13955220 NM_001369 NP_001360 A/G T558A minus 24420841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12599 rs1530498 DNAH5 1767 5 13955220 NM_001369 NP_001360 A/G T558A minus 24420841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12600 rs1530498 DNAH5 1767 5 13955220 NM_001369 NP_001360 A/G T558A minus 24420841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 5p15.2 "dynein, axonemal, heavy polypeptide 5" 12601 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 2373192 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12602 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 12675547 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.32 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12603 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 12675547 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.33 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12604 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 12675547 776 SNP500CANCER AFR1 African / African-American (24) 48 0.38 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12605 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 12675547 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12606 rs1532268 MTRR 4552 5 7931179 NM_002454 NP_002445 A/G S175L minus 12675547 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.23 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12607 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 2373192 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12608 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 12675547 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.32 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12609 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 12675547 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.33 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12610 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 12675547 776 SNP500CANCER AFR1 African / African-American (24) 48 0.38 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12611 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 12675547 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12612 rs1532268 MTRR 4552 5 7931179 NM_024010 NP_076915 A/G S202L minus 12675547 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.23 121 "by doubleHit,submitter,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 12613 rs1532918 TMF1 7110 3 69165398 NM_007114 NP_009045 C/G D798H minus 2373936 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq" 3p21-p12 TATA element modulatory factor 1 12614 rs1532918 TMF1 7110 3 69165398 NM_007114 NP_009045 C/G D798H minus 2373936 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,submitter,freq" 3p21-p12 TATA element modulatory factor 1 12615 rs1532918 TMF1 7110 3 69165398 NM_007114 NP_009045 C/G D798H minus 24329072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq" 3p21-p12 TATA element modulatory factor 1 12616 rs1532918 TMF1 7110 3 69165398 NM_007114 NP_009045 C/G D798H minus 24329072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "HapMap,submitter,freq" 3p21-p12 TATA element modulatory factor 1 12617 rs1532918 TMF1 7110 3 69165398 NM_007114 NP_009045 C/G D798H minus 24329072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 3p21-p12 TATA element modulatory factor 1 12618 rs1535422 RUSC2 9853 9 35536735 XM_048462 XP_048462 A/G T73A plus 23558649 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 9p13.2 RUN and SH3 domain containing 2 12619 rs1535422 RUSC2 9853 9 35536735 XM_048462 XP_048462 A/G T73A plus 23558649 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 9p13.2 RUN and SH3 domain containing 2 12620 rs1535422 RUSC2 9853 9 35536735 XM_048462 XP_048462 A/G T73A plus 23558649 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9p13.2 RUN and SH3 domain containing 2 12621 rs1535539 DNA2L 1763 10 69901707 XM_166103 XP_166103 C/T F60S minus 2376850 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by doubleHit,freq,cluster" 10q21.3-q22.1 DNA2 DNA replication helicase 2-like (yeast) 12622 rs1535539 DNA2L 1763 10 69901707 XM_166103 XP_166103 C/T F60S minus 23591323 1371 PERLEGEN AFD_EUR_PANEL European American (24) 34 1 123 "by doubleHit,freq,cluster" 10q21.3-q22.1 DNA2 DNA replication helicase 2-like (yeast) 12623 rs1535539 DNA2L 1763 10 69901707 XM_166103 XP_166103 C/T F60S minus 23591323 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.36 123 "by doubleHit,freq,cluster" 10q21.3-q22.1 DNA2 DNA replication helicase 2-like (yeast) 12624 rs1535539 DNA2L 1763 10 69901707 XM_166103 XP_166103 C/T F60S minus 23591323 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 10q21.3-q22.1 DNA2 DNA replication helicase 2-like (yeast) 12625 rs1535692 GPC6 10082 13 93832750 NM_005708 NP_005699 A/G V412M plus 2377014 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 13q32 glypican 6 12626 rs1535692 GPC6 10082 13 93832750 NM_005708 NP_005699 A/G V412M plus 2377014 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 13q32 glypican 6 12627 rs1535692 GPC6 10082 13 93832750 NM_005708 NP_005699 A/G V412M plus 24708516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 13q32 glypican 6 12628 rs1535692 GPC6 10082 13 93832750 NM_005708 NP_005699 A/G V412M plus 24708516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 13q32 glypican 6 12629 rs1535692 GPC6 10082 13 93832750 NM_005708 NP_005699 A/G V412M plus 24708516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 13q32 glypican 6 12630 rs1535882 SIRPB1 10326 20 1548524 NM_006065 NP_006056 C/T R23G plus 2377227 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 121 "HapMap,doubleHit,freq,cluster" 20p13 signal-regulatory protein beta 1 12631 rs1535882 SIRPB1 10326 20 1548524 NM_006065 NP_006056 C/T R23G plus 2377227 1303 SEQUENOM CEPH CEPH (92) 92 0.2 121 "HapMap,doubleHit,freq,cluster" 20p13 signal-regulatory protein beta 1 12632 rs1536690 ZNF169 169841 9 94134865 NM_194320 NP_919301 A/G P59L minus 2378115 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,freq,cluster" 9q22.32 zinc finger protein 169 12633 rs1536690 ZNF169 169841 9 94134865 NM_194320 NP_919301 A/G P59L minus 23726710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 9q22.32 zinc finger protein 169 12634 rs1536690 ZNF169 169841 9 94134865 NM_194320 NP_919301 A/G P59L minus 23726710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 9q22.32 zinc finger protein 169 12635 rs1536690 ZNF169 169841 9 94134865 NM_194320 NP_919301 A/G P59L minus 23726710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 9q22.32 zinc finger protein 169 12636 rs1536929 OR1B1 347169 9 122470923 XM_294534 XP_294534 C/T L149S minus 2378369 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12637 rs1536929 OR1B1 347169 9 122470923 XM_294534 XP_294534 C/T L149S minus 23342591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12638 rs1536929 OR1B1 347169 9 122470923 XM_294534 XP_294534 C/T L149S minus 23342591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12639 rs1536929 OR1B1 347169 9 122470923 XM_294534 XP_294534 C/T L149S minus 23342591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12640 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 2378696 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12641 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 2378696 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.15 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12642 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 2378696 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.42 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12643 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 3241887 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.37 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12644 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 23996349 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12645 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 23996349 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12646 rs1537232 DNAH8 1769 6 39059976 NM_001371 NP_001362 C/T T4106M plus 23996349 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12647 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 2380235 771 TSC-CSHL SC_12_A CORIELL Asian (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12648 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 2380235 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 14 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12649 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 2380235 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12650 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 2380235 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12651 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 2380235 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12652 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 3177973 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12653 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 23784406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12654 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 23784406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12655 rs1538660 IKBKAP 8518 9 108721380 NM_003640 NP_003631 C/T P1158L minus 23784406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 12656 rs1539587 NRAP 4892 10 115362146 NM_006175 NP_006166 C/T A1077V minus 2381239 1303 SEQUENOM CEPH CEPH (92) 92 0.09 88 by freq 10q24-q26 nebulin-related anchoring protein 12657 rs1539587 NRAP 4892 10 115362146 NM_198060 NP_932326 C/T A1112V minus 2381239 1303 SEQUENOM CEPH CEPH (92) 92 0.09 88 by freq 10q24-q26 nebulin-related anchoring protein 12658 rs1541314 MUC5B 4587 11 1220099 XM_039877 XP_039877 A/G G1705S plus 2383163 1303 SEQUENOM CEPH CEPH (92) 92 0.06 101 by freq 11p15 "mucin 5, subtype B, tracheobronchial" 12659 rs1542087 SMYD1 150572 2 88226819 NM_198274 NP_938015 G/T Q164P minus 2384025 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 2p11.2 SET and MYND domain containing 1 12660 rs1542087 SMYD1 150572 2 88226819 NM_198274 NP_938015 G/T Q164P minus 23167992 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 2p11.2 SET and MYND domain containing 1 12661 rs1542087 SMYD1 150572 2 88226819 NM_198274 NP_938015 G/T Q164P minus 23167992 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by cluster,freq" 2p11.2 SET and MYND domain containing 1 12662 rs1542087 SMYD1 150572 2 88226819 NM_198274 NP_938015 G/T Q164P minus 23167992 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 2p11.2 SET and MYND domain containing 1 12663 rs1542752 OTOP3 347741 17 70449695 NM_178233 NP_839947 A/G S199P minus 2384755 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by cluster,freq" 17q25.2 otopetrin 3 12664 rs1542752 OTOP3 347741 17 70449695 NM_178233 NP_839947 A/G S199P minus 24559878 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 17q25.2 otopetrin 3 12665 rs1542752 OTOP3 347741 17 70449695 NM_178233 NP_839947 A/G S199P minus 24559878 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 17q25.2 otopetrin 3 12666 rs1542752 OTOP3 347741 17 70449695 NM_178233 NP_839947 A/G S199P minus 24559878 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 17q25.2 otopetrin 3 12667 rs1543547 RAET1L 154064 6 150438646 NM_130900 NP_570970 C/T R26G plus 2385628 885 TSC-CSHL HapMap-CEPH-30-trios 56 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25.1 retinoic acid early transcript 1L 12668 rs1543547 RAET1L 154064 6 150438646 NM_130900 NP_570970 C/T R26G plus 24453248 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25.1 retinoic acid early transcript 1L 12669 rs1543547 RAET1L 154064 6 150438646 NM_130900 NP_570970 C/T R26G plus 24453248 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25.1 retinoic acid early transcript 1L 12670 rs1543547 RAET1L 154064 6 150438646 NM_130900 NP_570970 C/T R26G plus 24453248 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25.1 retinoic acid early transcript 1L 12671 rs1545040 EML2 24139 19 50821839 NM_012155 NP_036287 G/T E235D minus 2387277 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 88 "HapMap,freq" 19q13.32 echinoderm microtubule associated protein like 2 12672 rs1545040 EML2 24139 19 50821839 NM_012155 NP_036287 G/T E235D minus 2387277 1303 SEQUENOM CEPH CEPH (92) 92 0.05 88 "HapMap,freq" 19q13.32 echinoderm microtubule associated protein like 2 12673 rs1545133 POLR1B 84172 2 113025704 NM_019014 NP_061887 C/T S295L plus 2387383 638 TSC-CSHL TSC_42_AA TSC African American (42) 42 0.5 88 "HapMap,doubleHit,submitter,freq" 2q13 "polymerase (RNA) I polypeptide B, 128kDa" 12674 rs1545133 POLR1B 84172 2 113025704 NM_019014 NP_061887 C/T S295L plus 2387383 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.4 88 "HapMap,doubleHit,submitter,freq" 2q13 "polymerase (RNA) I polypeptide B, 128kDa" 12675 rs1545133 POLR1B 84172 2 113025704 NM_019014 NP_061887 C/T S295L plus 2387383 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.25 88 "HapMap,doubleHit,submitter,freq" 2q13 "polymerase (RNA) I polypeptide B, 128kDa" 12676 rs1545133 POLR1B 84172 2 113025704 NM_019014 NP_061887 C/T S295L plus 2387383 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 88 "HapMap,doubleHit,submitter,freq" 2q13 "polymerase (RNA) I polypeptide B, 128kDa" 12677 rs1545133 POLR1B 84172 2 113025704 NM_019014 NP_061887 C/T S295L plus 2387383 1303 SEQUENOM CEPH CEPH (92) 92 0.44 88 "HapMap,doubleHit,submitter,freq" 2q13 "polymerase (RNA) I polypeptide B, 128kDa" 12678 rs1545620 MYO9B 4650 19 17164774 NM_004145 NP_004136 A/C S1011A minus 2387929 1303 SEQUENOM CEPH CEPH (92) 92 0.43 116 "by doubleHit,freq,cluster" 19p13.1 myosin IXB 12679 rs1546732 COMMD2 51122 3 150942075 NM_016094 NP_057178 A/T Q177H minus 2389153 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 HapMap 3q25.1 COMM domain containing 2 12680 rs1546732 COMMD2 51122 3 150942075 NM_016094 NP_057178 A/T Q177H minus 2389153 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.1 123 HapMap 3q25.1 COMM domain containing 2 12681 rs1546732 COMMD2 51122 3 150942075 NM_016094 NP_057178 A/T Q177H minus 2389153 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 HapMap 3q25.1 COMM domain containing 2 12682 rs1546732 COMMD2 51122 3 150942075 NM_016094 NP_057178 A/T Q177H minus 2389153 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 3q25.1 COMM domain containing 2 12683 rs1547742 SIPA1L2 57568 1 228874776 NM_020808 NP_065859 C/T S1179L minus 2390318 1303 SEQUENOM CEPH CEPH (92) 92 0.13 111 by freq 1q42.2 signal-induced proliferation-associated 1 like 2 12684 rs1548349 FRMD1 79981 6 168278401 NM_024919 NP_079195 C/G Q456E plus 2390982 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,submitter,freq,cluster" 6q27 FERM domain containing 1 12685 rs1548349 FRMD1 79981 6 168278401 NM_024919 NP_079195 C/G Q456E plus 3203862 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.15 123 "by doubleHit,submitter,freq,cluster" 6q27 FERM domain containing 1 12686 rs1548349 FRMD1 79981 6 168278401 NM_024919 NP_079195 C/G Q456E plus 23347447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6q27 FERM domain containing 1 12687 rs1548349 FRMD1 79981 6 168278401 NM_024919 NP_079195 C/G Q456E plus 23347447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 6q27 FERM domain containing 1 12688 rs1548349 FRMD1 79981 6 168278401 NM_024919 NP_079195 C/G Q456E plus 23347447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 6q27 FERM domain containing 1 12689 rs1548476 ZNF550 162972 19 62750348 NM_153231 NP_694963 A/G I350T plus 2391116 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 550 12690 rs1548476 ZNF550 162972 19 62750348 NM_153231 NP_694963 A/G I350T plus 2391116 1303 SEQUENOM CEPH CEPH (92) 92 0.46 120 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 550 12691 rs1548476 ZNF550 162972 19 62750348 NM_153231 NP_694963 A/G I350T plus 2988791 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.25 120 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 550 12692 rs1551886 ALDH3B2 222 11 67187338 NM_000695 NP_000686 C/T H361R plus 2394818 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by cluster,freq" 11q13 "aldehyde dehydrogenase 3 family, member B2" 12693 rs1551886 ALDH3B2 222 11 67187338 NM_000695 NP_000686 C/T H361R plus 3172760 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.06 121 "by cluster,freq" 11q13 "aldehyde dehydrogenase 3 family, member B2" 12694 rs1551886 ALDH3B2 222 11 67187338 NM_000695 NP_000686 C/T H361R plus 4927177 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.05 121 "by cluster,freq" 11q13 "aldehyde dehydrogenase 3 family, member B2" 12695 rs1551888 ALDH3B2 222 11 67190445 NM_000695 NP_000686 C/T S52N plus 2394820 1303 SEQUENOM CEPH CEPH (92) 92 0.16 121 "by cluster,freq" 11q13 "aldehyde dehydrogenase 3 family, member B2" 12696 rs1551888 ALDH3B2 222 11 67190445 NM_000695 NP_000686 C/T S52N plus 3172759 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.13 121 "by cluster,freq" 11q13 "aldehyde dehydrogenase 3 family, member B2" 12697 rs1552280 TTN 7273 2 179469541 NM_133379 NP_596870 C/T S1295L minus 2395246 1303 SEQUENOM CEPH CEPH (92) 92 0.18 121 "by cluster,freq" 2q31 titin 12698 rs1554005 ACOXL 55289 2 111315189 NM_018308 NP_060778 C/T T78M plus 24357304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 2q13 acyl-Coenzyme A oxidase-like 12699 rs1554005 ACOXL 55289 2 111315189 NM_018308 NP_060778 C/T T78M plus 24357304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 2q13 acyl-Coenzyme A oxidase-like 12700 rs1554005 ACOXL 55289 2 111315189 NM_018308 NP_060778 C/T T78M plus 24357304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 2q13 acyl-Coenzyme A oxidase-like 12701 rs1555498 IL20RA 53832 6 137367540 NM_014432 NP_055247 C/T V259I plus 2398734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12702 rs1555498 IL20RA 53832 6 137367540 NM_014432 NP_055247 C/T V259I plus 23410412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12703 rs1555498 IL20RA 53832 6 137367540 NM_014432 NP_055247 C/T V259I plus 23410412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12704 rs1555498 IL20RA 53832 6 137367540 NM_014432 NP_055247 C/T V259I plus 23410412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 6q22.33-q23.1 "interleukin 20 receptor, alpha" 12705 rs1556189 OR1B1 347169 9 122470428 XM_294534 XP_294534 G/T V314G minus 2399474 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12706 rs1556189 OR1B1 347169 9 122470428 XM_294534 XP_294534 G/T V314G minus 24374795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12707 rs1556189 OR1B1 347169 9 122470428 XM_294534 XP_294534 G/T V314G minus 24374795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12708 rs1556189 OR1B1 347169 9 122470428 XM_294534 XP_294534 G/T V314G minus 24374795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily B, member 1" 12709 rs1556314 TRPM2 7226 21 44635771 NM_001001188 NP_001001188 G/T D543E plus 2399607 3 KWOK C USA Caucasian (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12710 rs1556314 TRPM2 7226 21 44635771 NM_001001188 NP_001001188 G/T D543E plus 2399607 5 KWOK B USA African-American (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12711 rs1556314 TRPM2 7226 21 44635771 NM_001001188 NP_001001188 G/T D543E plus 2399607 7 KWOK A Chinese (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12712 rs1556314 TRPM2 7226 21 44635771 NM_001001188 NP_001001188 G/T D543E plus 2399607 1303 SEQUENOM CEPH CEPH (92) 92 0.13 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12713 rs1556314 TRPM2 7226 21 44635771 NM_001001188 NP_001001188 G/T D543E plus 4019324 634 PERLEGEN NCBI|NIHPDR NIHPDR 6 0.33 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12714 rs1556314 TRPM2 7226 21 44635771 NM_003307 NP_003298 G/T D543E plus 2399607 3 KWOK C USA Caucasian (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12715 rs1556314 TRPM2 7226 21 44635771 NM_003307 NP_003298 G/T D543E plus 2399607 5 KWOK B USA African-American (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12716 rs1556314 TRPM2 7226 21 44635771 NM_003307 NP_003298 G/T D543E plus 2399607 7 KWOK A Chinese (30) 84 1 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12717 rs1556314 TRPM2 7226 21 44635771 NM_003307 NP_003298 G/T D543E plus 2399607 1303 SEQUENOM CEPH CEPH (92) 92 0.13 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12718 rs1556314 TRPM2 7226 21 44635771 NM_003307 NP_003298 G/T D543E plus 4019324 634 PERLEGEN NCBI|NIHPDR NIHPDR 6 0.33 119 "by doubleHit,submitter,freq,cluster" 21q22.3 "transient receptor potential cation channel, subfamily M, member 2" 12719 rs1557294 CLDN8 9073 21 30510042 NM_199328 NP_955360 C/T T25A plus 2400654 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 88 "HapMap,doubleHit" 21q22.11 claudin 8 12720 rs1560058 EPB41L4A 64097 5 111547639 NM_022140 NP_071423 C/T N532S plus 6156275 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by submitter,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 12721 rs1560058 EPB41L4A 64097 5 111547639 NM_022140 NP_071423 C/T N532S plus 23411946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by submitter,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 12722 rs1560058 EPB41L4A 64097 5 111547639 NM_022140 NP_071423 C/T N532S plus 23411946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by submitter,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 12723 rs1560058 EPB41L4A 64097 5 111547639 NM_022140 NP_071423 C/T N532S plus 23411946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 12724 rs1560099 ZNF415 55786 19 58304532 NM_018355 NP_060825 A/G Y193C minus 2403668 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by submitter,freq,cluster" 19q13.42 zinc finger protein 415 12725 rs1560099 ZNF415 55786 19 58304532 NM_018355 NP_060825 A/G Y193C minus 24074620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq,cluster" 19q13.42 zinc finger protein 415 12726 rs1560099 ZNF415 55786 19 58304532 NM_018355 NP_060825 A/G Y193C minus 24074620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 19q13.42 zinc finger protein 415 12727 rs1560099 ZNF415 55786 19 58304532 NM_018355 NP_060825 A/G Y193C minus 24074620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by submitter,freq,cluster" 19q13.42 zinc finger protein 415 12728 rs1563632 SMCR8 140775 17 18161495 NM_144775 NP_658988 C/T R556H minus 24127802 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 12729 rs1563632 SMCR8 140775 17 18161495 NM_144775 NP_658988 C/T R556H minus 24127802 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 12730 rs1563632 SMCR8 140775 17 18161495 NM_144775 NP_658988 C/T R556H minus 24127802 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 12731 rs1564374 GEFT 115557 12 56296430 NM_133483 NP_597840 A/G Q400R plus 2408291 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.19 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12732 rs1564374 GEFT 115557 12 56296430 NM_133483 NP_597840 A/G Q400R plus 2408291 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12733 rs1564374 GEFT 115557 12 56296430 NM_133483 NP_597840 A/G Q400R plus 2408291 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.1 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12734 rs1564374 GEFT 115557 12 56296430 NM_133483 NP_597840 A/G Q400R plus 2408291 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12735 rs1564374 GEFT 115557 12 56296430 NM_133483 NP_597840 A/G Q400R plus 3254834 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.15 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12736 rs1564374 GEFT 115557 12 56296430 NM_182947 NP_891992 A/G Q506R plus 2408291 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.19 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12737 rs1564374 GEFT 115557 12 56296430 NM_182947 NP_891992 A/G Q506R plus 2408291 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.4 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12738 rs1564374 GEFT 115557 12 56296430 NM_182947 NP_891992 A/G Q506R plus 2408291 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.1 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12739 rs1564374 GEFT 115557 12 56296430 NM_182947 NP_891992 A/G Q506R plus 2408291 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12740 rs1564374 GEFT 115557 12 56296430 NM_182947 NP_891992 A/G Q506R plus 3254834 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.15 120 "HapMap,doubleHit,freq,cluster" 12q13.2 RAC/CDC42 exchange factor 12741 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12742 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12743 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12744 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12745 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12746 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 2410365 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12747 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 4950403 738 YUSUKE JBIC-ALLELE Japanese (752) 1078 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12748 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 24706967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12749 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 24706967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12750 rs1566286 HLC-8 55028 17 68750028 NM_017941 NP_060411 A/G A522T plus 24706967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 17q25.1 lung cancer-related protein 8 12751 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 2410866 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12752 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 2410866 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12753 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 3205617 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12754 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 24208003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12755 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 24208003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12756 rs1566734 PTPRJ 5795 11 48101951 NM_002843 NP_002834 G/T Q276P minus 24208003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 11p11.2 "protein tyrosine phosphatase, receptor type, J" 12757 rs1567047 FATJ 79633 4 126730347 NM_024582 NP_078858 C/T G1822D minus 2411201 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 111 "HapMap,doubleHit,submitter,freq" 4q28.1 fat-like cadherin FATJ 12758 rs1567047 FATJ 79633 4 126730347 NM_024582 NP_078858 C/T G1822D minus 2411201 1303 SEQUENOM CEPH CEPH (92) 92 0.49 111 "HapMap,doubleHit,submitter,freq" 4q28.1 fat-like cadherin FATJ 12759 rs1567759 KRT1B 374454 12 51377833 NM_175078 NP_778253 G/T G220C minus 2411973 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 1B 12760 rs1567759 KRT1B 374454 12 51377833 NM_175078 NP_778253 G/T G220C minus 23361279 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 1B 12761 rs1567759 KRT1B 374454 12 51377833 NM_175078 NP_778253 G/T G220C minus 23361279 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 1B 12762 rs1567759 KRT1B 374454 12 51377833 NM_175078 NP_778253 G/T G220C minus 23361279 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 1B 12763 rs1569767 SLC24A3 57419 20 19209623 NM_020689 NP_065740 A/G V55I plus 2414142 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 12764 rs1569767 SLC24A3 57419 20 19209623 NM_020689 NP_065740 A/G V55I plus 24528884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 12765 rs1569767 SLC24A3 57419 20 19209623 NM_020689 NP_065740 A/G V55I plus 24528884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 12766 rs1569767 SLC24A3 57419 20 19209623 NM_020689 NP_065740 A/G V55I plus 24528884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 12767 rs1572912 TBC1D13 54662 9 128645108 NM_018201 NP_060671 A/G V190A minus 11984479 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13 "TBC1 domain family, member 13" 12768 rs1572912 TBC1D13 54662 9 128645108 NM_018201 NP_060671 A/G V190A minus 11984479 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13 "TBC1 domain family, member 13" 12769 rs1572912 TBC1D13 54662 9 128645108 NM_018201 NP_060671 A/G V190A minus 24088575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13 "TBC1 domain family, member 13" 12770 rs1572912 TBC1D13 54662 9 128645108 NM_018201 NP_060671 A/G V190A minus 24088575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13 "TBC1 domain family, member 13" 12771 rs1572912 TBC1D13 54662 9 128645108 NM_018201 NP_060671 A/G V190A minus 24088575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13 "TBC1 domain family, member 13" 12772 rs1572983 BAAT 570 9 101213183 NM_001701 NP_001692 C/T R20Q plus 2417719 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 9q22.3 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 12773 rs1572983 BAAT 570 9 101213183 NM_001701 NP_001692 C/T R20Q plus 2417719 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 9q22.3 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 12774 rs1572983 BAAT 570 9 101213183 NM_001701 NP_001692 C/T R20Q plus 23517997 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 9q22.3 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 12775 rs1572983 BAAT 570 9 101213183 NM_001701 NP_001692 C/T R20Q plus 23517997 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 9q22.3 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 12776 rs1572983 BAAT 570 9 101213183 NM_001701 NP_001692 C/T R20Q plus 23517997 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 9q22.3 bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) 12777 rs1573496 ADH7 131 4 100706847 NM_000673 NP_000664 C/G G80A plus 2418264 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 88 by freq 4q23-q24 "alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide" 12778 rs1573496 ADH7 131 4 100706847 NM_000673 NP_000664 C/G G80A plus 2418264 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 88 by freq 4q23-q24 "alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide" 12779 rs1573496 ADH7 131 4 100706847 NM_000673 NP_000664 C/G G80A plus 2418264 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 88 by freq 4q23-q24 "alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide" 12780 rs1573496 ADH7 131 4 100706847 NM_000673 NP_000664 C/G G80A plus 2418264 1303 SEQUENOM CEPH CEPH (92) 92 0.14 88 by freq 4q23-q24 "alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide" 12781 rs1573536 SSH3 54961 11 66835753 NM_017857 NP_060327 C/T R600H minus 2418310 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 11q13.1 slingshot homolog 3 (Drosophila) 12782 rs1573536 SSH3 54961 11 66835753 NM_017857 NP_060327 C/T R600H minus 2418310 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,freq,cluster" 11q13.1 slingshot homolog 3 (Drosophila) 12783 rs1573536 SSH3 54961 11 66835753 NM_017857 NP_060327 C/T R600H minus 23599381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 11q13.1 slingshot homolog 3 (Drosophila) 12784 rs1573536 SSH3 54961 11 66835753 NM_017857 NP_060327 C/T R600H minus 23599381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 11q13.1 slingshot homolog 3 (Drosophila) 12785 rs1573536 SSH3 54961 11 66835753 NM_017857 NP_060327 C/T R600H minus 23599381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 11q13.1 slingshot homolog 3 (Drosophila) 12786 rs1573537 FBXL11 22992 11 66739992 NM_012308 NP_036440 C/T G228E minus 2418311 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 88 HapMap 11q13.1 F-box and leucine-rich repeat protein 11 12787 rs1573649 HLA-DQB2 3120 6 32839236 NM_182549 NP_872355 C/T T1M minus 2985207 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "by doubleHit,submitter,freq,cluster" 6p21 "major histocompatibility complex, class II, DQ beta 2" 12788 rs1573649 HLA-DQB2 3120 6 32839236 NM_182549 NP_872355 C/T T1M minus 23717844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 6p21 "major histocompatibility complex, class II, DQ beta 2" 12789 rs1573649 HLA-DQB2 3120 6 32839236 NM_182549 NP_872355 C/T T1M minus 23717844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 6p21 "major histocompatibility complex, class II, DQ beta 2" 12790 rs1573649 HLA-DQB2 3120 6 32839236 NM_182549 NP_872355 C/T T1M minus 23717844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6p21 "major histocompatibility complex, class II, DQ beta 2" 12791 rs1592624 CSMD3 114788 8 113310264 NM_052900 NP_443132 G/T N3415H plus 2225381 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12792 rs1592624 CSMD3 114788 8 113310264 NM_052900 NP_443132 G/T N3415H plus 24470236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12793 rs1592624 CSMD3 114788 8 113310264 NM_052900 NP_443132 G/T N3415H plus 24470236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12794 rs1592624 CSMD3 114788 8 113310264 NM_052900 NP_443132 G/T N3415H plus 24470236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12795 rs1592624 CSMD3 114788 8 113310264 NM_198123 NP_937756 G/T N3621H plus 2225381 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12796 rs1592624 CSMD3 114788 8 113310264 NM_198123 NP_937756 G/T N3621H plus 24470236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12797 rs1592624 CSMD3 114788 8 113310264 NM_198123 NP_937756 G/T N3621H plus 24470236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12798 rs1592624 CSMD3 114788 8 113310264 NM_198123 NP_937756 G/T N3621H plus 24470236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12799 rs1592624 CSMD3 114788 8 113310264 NM_198124 NP_937757 G/T N3581H plus 2225381 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12800 rs1592624 CSMD3 114788 8 113310264 NM_198124 NP_937757 G/T N3581H plus 24470236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12801 rs1592624 CSMD3 114788 8 113310264 NM_198124 NP_937757 G/T N3581H plus 24470236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12802 rs1592624 CSMD3 114788 8 113310264 NM_198124 NP_937757 G/T N3581H plus 24470236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 12803 rs1599882 GZMM 3004 19 500678 NM_005317 NP_005308 C/T R221G minus 2290434 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 121 HapMap 19p13.3 granzyme M (lymphocyte met-ase 1) 12804 rs1599882 GZMM 3004 19 500678 NM_005317 NP_005308 C/T R221G minus 2290434 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 HapMap 19p13.3 granzyme M (lymphocyte met-ase 1) 12805 rs1609860 STAB2 55576 12 102550921 NM_017564 NP_060034 A/C P510H plus 2392314 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 stabilin 2 12806 rs1609860 STAB2 55576 12 102550921 NM_017564 NP_060034 A/C P510H plus 24015951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 stabilin 2 12807 rs1609860 STAB2 55576 12 102550921 NM_017564 NP_060034 A/C P510H plus 24015951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 stabilin 2 12808 rs1609860 STAB2 55576 12 102550921 NM_017564 NP_060034 A/C P510H plus 24015951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 stabilin 2 12809 rs1611762 SPRR1A 6698 1 149770905 NM_005987 NP_005978 A/C H42Q plus 2419722 555 UUGC NIH90 NIHPDR 162 0.42 100 "by cluster,freq" 1q21-q22 small proline-rich protein 1A 12810 rs1611762 SPRR1A 6698 1 149770905 NM_005987 NP_005978 A/C H42Q plus 3243925 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 100 "by cluster,freq" 1q21-q22 small proline-rich protein 1A 12811 rs1611764 SPRR1A 6698 1 149770960 NM_005987 NP_005978 A/G V61I plus 2419724 555 UUGC NIH90 NIHPDR 156 0.38 111 "by cluster,freq" 1q21-q22 small proline-rich protein 1A 12812 rs1611764 SPRR1A 6698 1 149770960 NM_005987 NP_005978 A/G V61I plus 2419724 1303 SEQUENOM CEPH CEPH (92) 92 0.38 111 "by cluster,freq" 1q21-q22 small proline-rich protein 1A 12813 rs1611770 MUC1 4582 1 151973343 NM_002456 NP_002447 A/G V135M minus 2419730 555 UUGC NIH90 NIHPDR 176 0.02 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12814 rs1611770 MUC1 4582 1 151973343 NM_002456 NP_002447 A/G V135M minus 15354946 693 EGP_SNPS PDR90 NIHPDR 170 0.02 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12815 rs1611770 MUC1 4582 1 151973343 NM_002456 NP_002447 A/G V135M minus 15354946 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12816 rs1611770 MUC1 4582 1 151973343 NM_182741 NP_877418 A/G V377M minus 2419730 555 UUGC NIH90 NIHPDR 176 0.02 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12817 rs1611770 MUC1 4582 1 151973343 NM_182741 NP_877418 A/G V377M minus 15354946 693 EGP_SNPS PDR90 NIHPDR 170 0.02 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12818 rs1611770 MUC1 4582 1 151973343 NM_182741 NP_877418 A/G V377M minus 15354946 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 1q21 "mucin 1, transmembrane" 12819 rs1611775 KCNA7 3743 19 54265937 NM_031886 NP_114092 C/G P189R minus 16790996 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "by doubleHit,freq,cluster" 19q13.3 "potassium voltage-gated channel, shaker-related subfamily, member 7" 12820 rs1613662 GP6 51206 19 60228407 NM_016363 NP_057447 A/G P219S plus 12471451 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12821 rs1613662 GP6 51206 19 60228407 NM_016363 NP_057447 A/G P219S plus 24694158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12822 rs1613662 GP6 51206 19 60228407 NM_016363 NP_057447 A/G P219S plus 24694158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12823 rs1613662 GP6 51206 19 60228407 NM_016363 NP_057447 A/G P219S plus 24694158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12824 rs1619896 ATAD3A 55210 1 1537833 NM_018188 NP_060658 C/T S101N minus 2435682 1303 SEQUENOM CEPH CEPH (92) 92 0.3 89 by freq 1p36.33 "ATPase family, AAA domain containing 3A" 12825 rs1620075 C8A 731 1 57090170 NM_000562 NP_000553 A/C R485L minus 2435889 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 119 "HapMap,submitter,freq" 1p32 "complement component 8, alpha polypeptide" 12826 rs1620075 C8A 731 1 57090170 NM_000562 NP_000553 A/C R485L minus 2435889 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "HapMap,submitter,freq" 1p32 "complement component 8, alpha polypeptide" 12827 rs1626154 P2RY2 5029 11 72623852 NM_002564 NP_002555 A/G R334C minus 2443017 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.06 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12828 rs1626154 P2RY2 5029 11 72623852 NM_002564 NP_002555 A/G R334C minus 2443017 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12829 rs1626154 P2RY2 5029 11 72623852 NM_002564 NP_002555 A/G R334C minus 2443017 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12830 rs1626154 P2RY2 5029 11 72623852 NM_002564 NP_002555 A/G R334C minus 2443017 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12831 rs1626154 P2RY2 5029 11 72623852 NM_176071 NP_788085 A/G R334C minus 2443017 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.06 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12832 rs1626154 P2RY2 5029 11 72623852 NM_176071 NP_788085 A/G R334C minus 2443017 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12833 rs1626154 P2RY2 5029 11 72623852 NM_176071 NP_788085 A/G R334C minus 2443017 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12834 rs1626154 P2RY2 5029 11 72623852 NM_176071 NP_788085 A/G R334C minus 2443017 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12835 rs1626154 P2RY2 5029 11 72623852 NM_176072 NP_788086 A/G R334C minus 2443017 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.06 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12836 rs1626154 P2RY2 5029 11 72623852 NM_176072 NP_788086 A/G R334C minus 2443017 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 18 1 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12837 rs1626154 P2RY2 5029 11 72623852 NM_176072 NP_788086 A/G R334C minus 2443017 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12838 rs1626154 P2RY2 5029 11 72623852 NM_176072 NP_788086 A/G R334C minus 2443017 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "by doubleHit,freq" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 12839 rs1627354 LAMB4 22798 7 107271935 NM_007356 NP_031382 A/G H1510Y plus 2444451 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 7q22-q31.2 "laminin, beta 4" 12840 rs1627354 LAMB4 22798 7 107271935 NM_007356 NP_031382 A/G H1510Y plus 2444451 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 7q22-q31.2 "laminin, beta 4" 12841 rs1627354 LAMB4 22798 7 107271935 NM_007356 NP_031382 A/G H1510Y plus 23420769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 7q22-q31.2 "laminin, beta 4" 12842 rs1627354 LAMB4 22798 7 107271935 NM_007356 NP_031382 A/G H1510Y plus 23420769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 7q22-q31.2 "laminin, beta 4" 12843 rs1627354 LAMB4 22798 7 107271935 NM_007356 NP_031382 A/G H1510Y plus 23420769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 7q22-q31.2 "laminin, beta 4" 12844 rs1628172 PDE4DIP 9659 1 142401197 XM_378185 XP_378185 A/G C774R plus 2445433 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12845 rs1628172 PDE4DIP 9659 1 142401197 XM_378185 XP_378185 A/G C774R plus 3240270 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.03 123 "by cluster,freq" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12846 rs1628172 PDE4DIP 9659 1 142401197 XM_378185 XP_378185 A/G C774R plus 24235811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12847 rs1628172 PDE4DIP 9659 1 142401197 XM_378185 XP_378185 A/G C774R plus 24235811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12848 rs1628172 PDE4DIP 9659 1 142401197 XM_378185 XP_378185 A/G C774R plus 24235811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12849 rs1628576 EPS8L1 54869 19 60286808 NM_017729 NP_060199 C/G Q330E minus 2445924 1303 SEQUENOM CEPH CEPH (92) 92 0.11 89 by freq 19q13.42 EPS8-like 1 12850 rs1628576 EPS8L1 54869 19 60286808 NM_133180 NP_573441 C/G Q457E minus 2445924 1303 SEQUENOM CEPH CEPH (92) 92 0.11 89 by freq 19q13.42 EPS8-like 1 12851 rs1628576 EPS8L1 54869 19 60286808 NM_139204 NP_631943 C/G Q471E minus 2445924 1303 SEQUENOM CEPH CEPH (92) 92 0.11 89 by freq 19q13.42 EPS8-like 1 12852 rs1629011 PDE4DIP 9659 1 142401277 XM_378185 XP_378185 C/T R747H plus 24814528 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "by doubleHit,freq,cluster" 1q12 phosphodiesterase 4D interacting protein (myomegalin) 12853 rs1635498 EXO1 9156 1 238371316 NM_003686 NP_003677 A/G R723C minus 3287091 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12854 rs1635498 EXO1 9156 1 238371316 NM_003686 NP_003677 A/G R723C minus 5604854 693 EGP_SNPS PDR90 NIHPDR 180 0.03 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12855 rs1635498 EXO1 9156 1 238371316 NM_003686 NP_003677 A/G R723C minus 24155837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12856 rs1635498 EXO1 9156 1 238371316 NM_003686 NP_003677 A/G R723C minus 24155837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12857 rs1635498 EXO1 9156 1 238371316 NM_003686 NP_003677 A/G R723C minus 24155837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12858 rs1635498 EXO1 9156 1 238371316 NM_006027 NP_006018 A/G R723C minus 3287091 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12859 rs1635498 EXO1 9156 1 238371316 NM_006027 NP_006018 A/G R723C minus 5604854 693 EGP_SNPS PDR90 NIHPDR 180 0.03 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12860 rs1635498 EXO1 9156 1 238371316 NM_006027 NP_006018 A/G R723C minus 24155837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12861 rs1635498 EXO1 9156 1 238371316 NM_006027 NP_006018 A/G R723C minus 24155837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12862 rs1635498 EXO1 9156 1 238371316 NM_006027 NP_006018 A/G R723C minus 24155837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12863 rs1635498 EXO1 9156 1 238371316 NM_130398 NP_569082 A/G R723C minus 3287091 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12864 rs1635498 EXO1 9156 1 238371316 NM_130398 NP_569082 A/G R723C minus 5604854 693 EGP_SNPS PDR90 NIHPDR 180 0.03 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12865 rs1635498 EXO1 9156 1 238371316 NM_130398 NP_569082 A/G R723C minus 24155837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12866 rs1635498 EXO1 9156 1 238371316 NM_130398 NP_569082 A/G R723C minus 24155837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12867 rs1635498 EXO1 9156 1 238371316 NM_130398 NP_569082 A/G R723C minus 24155837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 12868 rs1636632 UPK3B 80761 7 75789134 NM_030570 NP_085047 A/G Q293R plus 2455502 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 7q11.2 uroplakin 3B 12869 rs1636632 UPK3B 80761 7 75789134 NM_182683 NP_872624 A/G Q238R plus 2455502 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 7q11.2 uroplakin 3B 12870 rs1636632 UPK3B 80761 7 75789134 NM_182684 NP_872625 A/G K265E plus 2455502 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by doubleHit,freq,cluster" 7q11.2 uroplakin 3B 12871 rs1638415 HSPA12A 259217 10 118492687 XM_048898 XP_048898 G/T A424S minus 4095423 1303 SEQUENOM CEPH CEPH (92) 92 0.02 120 "by cluster,freq" 10q26.12 heat shock 70kDa protein 12A 12872 rs1639122 CHD4 1108 12 6581408 NM_001273 NP_001264 A/C E139D plus 2458459 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 120 "HapMap,doubleHit,freq,cluster" 12p13 chromodomain helicase DNA binding protein 4 12873 rs1639122 CHD4 1108 12 6581408 NM_001273 NP_001264 A/C E139D plus 2458459 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 120 "HapMap,doubleHit,freq,cluster" 12p13 chromodomain helicase DNA binding protein 4 12874 rs1639122 CHD4 1108 12 6581408 NM_001273 NP_001264 A/C E139D plus 2458459 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 120 "HapMap,doubleHit,freq,cluster" 12p13 chromodomain helicase DNA binding protein 4 12875 rs1639122 CHD4 1108 12 6581408 NM_001273 NP_001264 A/C E139D plus 2458459 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 0.48 120 "HapMap,doubleHit,freq,cluster" 12p13 chromodomain helicase DNA binding protein 4 12876 rs1639122 CHD4 1108 12 6581408 NM_001273 NP_001264 A/C E139D plus 3322431 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.46 120 "HapMap,doubleHit,freq,cluster" 12p13 chromodomain helicase DNA binding protein 4 12877 rs1643478 LMTK3 114783 19 53693440 XM_055866 XP_055866 C/G V1063L minus 2463958 1303 SEQUENOM CEPH CEPH (92) 92 0.02 89 by freq 19q13.33 lemur tyrosine kinase 3 12878 rs1643702 CAST 831 5 96110032 NM_001750 NP_001741 C/T E380K minus 2464184 1303 SEQUENOM CEPH CEPH (92) 92 0.19 89 by freq 5q15-q21 calpastatin 12879 rs1643702 CAST 831 5 96110032 NM_173060 NP_775083 C/T E358K minus 2464184 1303 SEQUENOM CEPH CEPH (92) 92 0.19 89 by freq 5q15-q21 calpastatin 12880 rs1643702 CAST 831 5 96110032 NM_173061 NP_775084 C/T E103K minus 2464184 1303 SEQUENOM CEPH CEPH (92) 92 0.19 89 by freq 5q15-q21 calpastatin 12881 rs1643702 CAST 831 5 96110032 NM_173062 NP_775085 C/T E262K minus 2464184 1303 SEQUENOM CEPH CEPH (92) 92 0.19 89 by freq 5q15-q21 calpastatin 12882 rs1644731 RDH8 50700 19 9992999 NM_015725 NP_056540 A/G M202T minus 3289013 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 19p13.2-p13.3 retinol dehydrogenase 8 (all-trans) 12883 rs1648348 SLC27A2 11001 15 48262058 NM_003645 NP_003636 A/C K48Q plus 2469591 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 15q21.2 "solute carrier family 27 (fatty acid transporter), member 2" 12884 rs1654413 GP6 51206 19 60218171 NM_016363 NP_057447 A/T L317Q plus 2477198 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12885 rs1654413 GP6 51206 19 60218171 NM_016363 NP_057447 A/T L317Q plus 23778688 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12886 rs1654413 GP6 51206 19 60218171 NM_016363 NP_057447 A/T L317Q plus 23778688 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12887 rs1654413 GP6 51206 19 60218171 NM_016363 NP_057447 A/T L317Q plus 23778688 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12888 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 2477201 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12889 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 2477201 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12890 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 3250989 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12891 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 23778720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12892 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 23778720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12893 rs1654416 GP6 51206 19 60221847 NM_016363 NP_057447 C/T E237K plus 23778720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12894 rs1656922 KNG1 3827 3 187925720 NM_000893 NP_000884 C/T M178T plus 7985061 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.44 121 "by doubleHit,freq,cluster" 3q27 kininogen 1 12895 rs1656922 KNG1 3827 3 187925720 NM_000893 NP_000884 C/T M178T plus 7985061 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.38 121 "by doubleHit,freq,cluster" 3q27 kininogen 1 12896 rs1656922 KNG1 3827 3 187925720 NM_000893 NP_000884 C/T M178T plus 7985061 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "by doubleHit,freq,cluster" 3q27 kininogen 1 12897 rs1656922 KNG1 3827 3 187925720 NM_000893 NP_000884 C/T M178T plus 20419477 889 PHARMGKB_PARC PA128275074 94 0.46 121 "by doubleHit,freq,cluster" 3q27 kininogen 1 12898 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 2481227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12899 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 2481227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12900 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 2481227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12901 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 2481227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12902 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 24225722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12903 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 24225722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12904 rs1657535 OSCAR 126014 19 59292044 NM_130771 NP_570127 G/T I101S minus 24225722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12905 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 2481227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12906 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 2481227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12907 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 2481227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12908 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 2481227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12909 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 24225722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12910 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 24225722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12911 rs1657535 OSCAR 126014 19 59292044 NM_133168 NP_573398 G/T I86S minus 24225722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12912 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 2481227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12913 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 2481227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12914 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 2481227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12915 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 2481227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12916 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 24225722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12917 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 24225722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12918 rs1657535 OSCAR 126014 19 59292044 NM_133169 NP_573399 G/T I97S minus 24225722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12919 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 2481227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12920 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 2481227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12921 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 2481227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12922 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 2481227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12923 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 24225722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12924 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 24225722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12925 rs1657535 OSCAR 126014 19 59292044 NM_206817 NP_996553 G/T I97S minus 24225722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12926 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 2481227 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.17 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12927 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 2481227 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.04 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12928 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 2481227 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12929 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 2481227 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12930 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 24225722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12931 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 24225722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12932 rs1657535 OSCAR 126014 19 59292044 NM_206818 NP_996554 G/T I101S minus 24225722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 19q13.42 osteoclast-associated receptor 12933 rs1657738 KCNJ12 3768 17 21259291 NM_021012 NP_066292 C/T S15L plus 2481458 1303 SEQUENOM CEPH CEPH (92) 92 0.3 89 by freq 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 12934 rs1657742 KCNJ12 3768 17 21259823 NM_021012 NP_066292 C/G Q192H plus 2481462 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 "by doubleHit,freq,cluster" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 12935 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 2497771 1303 SEQUENOM CEPH CEPH (92) 92 0.27 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12936 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 3232347 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.11 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12937 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 23595977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12938 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 23595977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12939 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 23595977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12940 rs1671017 LLGL2 3993 17 71082313 NM_004524 NP_004515 C/G P994R minus 24796546 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 "by cluster,freq" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12941 rs1671021 LLGL2 3993 17 71076766 NM_004524 NP_004515 A/G F479L minus 2497775 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,submitter,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12942 rs1671021 LLGL2 3993 17 71076766 NM_004524 NP_004515 A/G F479L minus 3252774 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.14 123 "by doubleHit,submitter,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12943 rs1671021 LLGL2 3993 17 71076766 NM_004524 NP_004515 A/G F479L minus 24561310 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.3 123 "by doubleHit,submitter,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12944 rs1671021 LLGL2 3993 17 71076766 NM_004524 NP_004515 A/G F479L minus 24561310 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.19 123 "by doubleHit,submitter,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12945 rs1671021 LLGL2 3993 17 71076766 NM_004524 NP_004515 A/G F479L minus 24561310 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12946 rs1671036 LLGL2 3993 17 71063780 NM_004524 NP_004515 C/T R45H minus 2497790 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12947 rs1671036 LLGL2 3993 17 71063780 NM_004524 NP_004515 C/T R45H minus 24097832 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12948 rs1671036 LLGL2 3993 17 71063780 NM_004524 NP_004515 C/T R45H minus 24097832 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12949 rs1671036 LLGL2 3993 17 71063780 NM_004524 NP_004515 C/T R45H minus 24097832 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q24-q25 lethal giant larvae homolog 2 (Drosophila) 12950 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 2497823 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12951 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 2497823 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12952 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 3176480 619 WICVAR MITOGPOP6 CORIELL Mixed 22 0.18 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12953 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 24659209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12954 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 24659209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12955 rs1671064 ACTN3 89 11 66084249 NM_001104 NP_001095 C/T R523Q minus 24659209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,submitter,freq,cluster" 11q13-q14 "actinin, alpha 3" 12956 rs1671152 GP6 51206 19 60218157 NM_016363 NP_057447 G/T N322H plus 2497940 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12957 rs1671152 GP6 51206 19 60218157 NM_016363 NP_057447 G/T N322H plus 23778686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12958 rs1671152 GP6 51206 19 60218157 NM_016363 NP_057447 G/T N322H plus 23778686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12959 rs1671152 GP6 51206 19 60218157 NM_016363 NP_057447 G/T N322H plus 23778686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.4 glycoprotein VI (platelet) 12960 rs1673407 PKHD1L1 93035 8 110529664 NM_177531 NP_803875 A/C V1965L minus 3102431 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12961 rs1673407 PKHD1L1 93035 8 110529664 NM_177531 NP_803875 A/C V1965L minus 24083720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12962 rs1673407 PKHD1L1 93035 8 110529664 NM_177531 NP_803875 A/C V1965L minus 24083720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12963 rs1673407 PKHD1L1 93035 8 110529664 NM_177531 NP_803875 A/C V1965L minus 24083720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12964 rs1673408 PKHD1L1 93035 8 110524497 NM_177531 NP_803875 G/T R1514S minus 19764146 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12965 rs1673408 PKHD1L1 93035 8 110524497 NM_177531 NP_803875 G/T R1514S minus 23573564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12966 rs1673408 PKHD1L1 93035 8 110524497 NM_177531 NP_803875 G/T R1514S minus 23573564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12967 rs1673408 PKHD1L1 93035 8 110524497 NM_177531 NP_803875 G/T R1514S minus 23573564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 12968 rs1673607 BITE 80321 3 139771919 NM_024491 NP_077817 A/G S135N minus 11556813 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 3q22-q23 p10-binding protein 12969 rs1673607 BITE 80321 3 139771919 NM_024491 NP_077817 A/G S135N minus 23209142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 3q22-q23 p10-binding protein 12970 rs1673607 BITE 80321 3 139771919 NM_024491 NP_077817 A/G S135N minus 23209142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 3q22-q23 p10-binding protein 12971 rs1673607 BITE 80321 3 139771919 NM_024491 NP_077817 A/G S135N minus 23209142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q22-q23 p10-binding protein 12972 rs1675404 BLVRB 645 19 45656164 NM_000713 NP_000704 C/T A70T plus 2503396 1303 SEQUENOM CEPH CEPH (92) 92 0.05 89 by freq 19q13.1-q13.2 biliverdin reductase B (flavin reductase (NADPH)) 12973 rs1676015 AIM1 202 6 107108107 XM_166300 XP_166300 A/T T2068S plus 2504092 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 6q21 absent in melanoma 1 12974 rs1676015 AIM1 202 6 107108107 XM_166300 XP_166300 A/T T2068S plus 23325393 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q21 absent in melanoma 1 12975 rs1676015 AIM1 202 6 107108107 XM_166300 XP_166300 A/T T2068S plus 23325393 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 6q21 absent in melanoma 1 12976 rs1676015 AIM1 202 6 107108107 XM_166300 XP_166300 A/T T2068S plus 23325393 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q21 absent in melanoma 1 12977 rs1676486 COL11A1 1301 1 103066159 NM_001854 NP_001845 A/G S1535P plus 2504599 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12978 rs1676486 COL11A1 1301 1 103066159 NM_001854 NP_001845 A/G S1535P plus 23850398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12979 rs1676486 COL11A1 1301 1 103066159 NM_001854 NP_001845 A/G S1535P plus 23850398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12980 rs1676486 COL11A1 1301 1 103066159 NM_001854 NP_001845 A/G S1535P plus 23850398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12981 rs1676486 COL11A1 1301 1 103066159 NM_080629 NP_542196 A/G S1547P plus 2504599 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12982 rs1676486 COL11A1 1301 1 103066159 NM_080629 NP_542196 A/G S1547P plus 23850398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12983 rs1676486 COL11A1 1301 1 103066159 NM_080629 NP_542196 A/G S1547P plus 23850398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12984 rs1676486 COL11A1 1301 1 103066159 NM_080629 NP_542196 A/G S1547P plus 23850398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12985 rs1676486 COL11A1 1301 1 103066159 NM_080630 NP_542197 A/G S1496P plus 2504599 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12986 rs1676486 COL11A1 1301 1 103066159 NM_080630 NP_542197 A/G S1496P plus 23850398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12987 rs1676486 COL11A1 1301 1 103066159 NM_080630 NP_542197 A/G S1496P plus 23850398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12988 rs1676486 COL11A1 1301 1 103066159 NM_080630 NP_542197 A/G S1496P plus 23850398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 1p21 "collagen, type XI, alpha 1" 12989 rs1678160 SP100 6672 2 231159268 NM_003113 NP_003104 A/G M433V plus 4917721 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.09 123 "by doubleHit,submitter,freq,cluster" 2q37.1 nuclear antigen Sp100 12990 rs1678160 SP100 6672 2 231159268 NM_003113 NP_003104 A/G M433V plus 9960068 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,submitter,freq,cluster" 2q37.1 nuclear antigen Sp100 12991 rs1678160 SP100 6672 2 231159268 NM_003113 NP_003104 A/G M433V plus 24330020 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 2q37.1 nuclear antigen Sp100 12992 rs1678160 SP100 6672 2 231159268 NM_003113 NP_003104 A/G M433V plus 24330020 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 2q37.1 nuclear antigen Sp100 12993 rs1678160 SP100 6672 2 231159268 NM_003113 NP_003104 A/G M433V plus 24330020 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 2q37.1 nuclear antigen Sp100 12994 rs1678674 DNAH8 1769 6 38867357 NM_001371 NP_001362 A/G A727T plus 4986738 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1474 0.32 119 "by doubleHit,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 12995 rs1687056 XTP2 23215 1 168258226 NM_015172 NP_055987 C/T P1771S plus 24802335 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 by freq 1q23.3 HBxAg transactivated protein 2 12996 rs1688005 FXYD5 53827 19 40340205 NM_014164 NP_054883 G/T S35A plus 2518444 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 12997 rs1688005 FXYD5 53827 19 40340205 NM_014164 NP_054883 G/T S35A plus 24194882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 12998 rs1688005 FXYD5 53827 19 40340205 NM_014164 NP_054883 G/T S35A plus 24194882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 12999 rs1688005 FXYD5 53827 19 40340205 NM_014164 NP_054883 G/T S35A plus 24194882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 13000 rs1688005 FXYD5 53827 19 40340205 NM_144779 NP_659003 G/T S35A plus 2518444 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 13001 rs1688005 FXYD5 53827 19 40340205 NM_144779 NP_659003 G/T S35A plus 24194882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 13002 rs1688005 FXYD5 53827 19 40340205 NM_144779 NP_659003 G/T S35A plus 24194882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 13003 rs1688005 FXYD5 53827 19 40340205 NM_144779 NP_659003 G/T S35A plus 24194882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq" 19q12-q13.1 FXYD domain containing ion transport regulator 5 13004 rs1693482 ADH1C 126 4 100621143 NM_000669 NP_000660 C/T R272Q plus 8819648 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.31 121 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase 1C (class I), gamma polypeptide" 13005 rs1693482 ADH1C 126 4 100621143 NM_000669 NP_000660 C/T R272Q plus 8819648 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.48 121 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase 1C (class I), gamma polypeptide" 13006 rs1693482 ADH1C 126 4 100621143 NM_000669 NP_000660 C/T R272Q plus 8819648 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 121 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase 1C (class I), gamma polypeptide" 13007 rs1693482 ADH1C 126 4 100621143 NM_000669 NP_000660 C/T R272Q plus 8819648 777 SNP500CANCER HISP1 Hispanic (23) 46 0.39 121 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase 1C (class I), gamma polypeptide" 13008 rs1693482 ADH1C 126 4 100621143 NM_000669 NP_000660 C/T R272Q plus 8819648 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 121 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase 1C (class I), gamma polypeptide" 13009 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 2529362 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13010 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 2529362 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13011 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 2529362 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13012 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 2529362 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 82 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13013 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 2529362 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13014 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 4942607 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13015 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 7988795 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13016 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 7988795 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13017 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 7988795 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13018 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 23271496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13019 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 23271496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13020 rs1697144 LY64 4064 5 66515760 NM_005582 NP_005573 A/G I223V minus 23271496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 13021 rs1702003 THEA 26027 1 54772383 NM_015547 NP_056362 C/T G202D minus 3251163 738 YUSUKE JBIC-ALLELE Japanese (752) 926 0.21 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13022 rs1702003 THEA 26027 1 54772383 NM_015547 NP_056362 C/T G202D minus 23156112 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13023 rs1702003 THEA 26027 1 54772383 NM_015547 NP_056362 C/T G202D minus 23156112 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13024 rs1702003 THEA 26027 1 54772383 NM_015547 NP_056362 C/T G202D minus 23156112 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13025 rs1702003 THEA 26027 1 54772383 NM_147161 NP_671517 C/T G202D minus 3251163 738 YUSUKE JBIC-ALLELE Japanese (752) 926 0.21 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13026 rs1702003 THEA 26027 1 54772383 NM_147161 NP_671517 C/T G202D minus 23156112 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13027 rs1702003 THEA 26027 1 54772383 NM_147161 NP_671517 C/T G202D minus 23156112 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13028 rs1702003 THEA 26027 1 54772383 NM_147161 NP_671517 C/T G202D minus 23156112 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1p32.3 "thioesterase, adipose associated" 13029 rs1708875 RUNDC1 146923 17 38386597 NM_173079 NP_775102 A/G W160R minus 2544276 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,cluster" 17q21.31 RUN domain containing 1 13030 rs1709189 SLC5A8 160728 12 100089986 NM_145913 NP_666018 C/T V193I plus 2544667 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 "solute carrier family 5 (iodide transporter), member 8" 13031 rs1709189 SLC5A8 160728 12 100089986 NM_145913 NP_666018 C/T V193I plus 24006574 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 "solute carrier family 5 (iodide transporter), member 8" 13032 rs1709189 SLC5A8 160728 12 100089986 NM_145913 NP_666018 C/T V193I plus 24006574 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 "solute carrier family 5 (iodide transporter), member 8" 13033 rs1709189 SLC5A8 160728 12 100089986 NM_145913 NP_666018 C/T V193I plus 24006574 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 12q23.3 "solute carrier family 5 (iodide transporter), member 8" 13034 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 2549690 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13035 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 3172658 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.31 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13036 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 3242149 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13037 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 6903954 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13038 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 6903954 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13039 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 6903954 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13040 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 6903954 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13041 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 6903954 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13042 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 23814907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13043 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 23814907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13044 rs1713449 TEP1 7011 14 19911547 NM_007110 NP_009041 C/T V2214I plus 23814907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13045 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.13 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13046 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13047 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.17 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13048 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.2 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13049 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13050 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 2549698 1303 SEQUENOM CEPH CEPH (92) 92 0.18 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13051 rs1713456 TEP1 7011 14 19919933 NM_007110 NP_009041 C/T C1468Y plus 3172663 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.15 120 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13052 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 2549699 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 102 by freq 14q11.2 telomerase-associated protein 1 13053 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 2549699 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.14 102 by freq 14q11.2 telomerase-associated protein 1 13054 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 2549699 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.07 102 by freq 14q11.2 telomerase-associated protein 1 13055 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 2549699 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.03 102 by freq 14q11.2 telomerase-associated protein 1 13056 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 2549699 1303 SEQUENOM CEPH CEPH (92) 92 0.03 102 by freq 14q11.2 telomerase-associated protein 1 13057 rs1713457 TEP1 7011 14 19919996 NM_007110 NP_009041 C/G S1447T plus 3172665 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.02 102 by freq 14q11.2 telomerase-associated protein 1 13058 rs1714864 KCNJ12 3768 17 21259714 NM_021012 NP_066292 A/G P156L minus 2551387 1303 SEQUENOM CEPH CEPH (92) 46 0.5 120 "by doubleHit,freq,cluster" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 13059 rs1714865 KCNJ12 3768 17 21259414 NM_021012 NP_066292 G/T E56A minus 2551388 1303 SEQUENOM CEPH CEPH (92) 92 0.18 108 "by cluster,freq" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 13060 rs1715919 MNS1 55329 15 54543577 NM_018365 NP_060835 G/T Q55P plus 2552574 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq,cluster" 15q21.2 meiosis-specific nuclear structural protein 1 13061 rs1715919 MNS1 55329 15 54543577 NM_018365 NP_060835 G/T Q55P plus 2552574 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,submitter,freq,cluster" 15q21.2 meiosis-specific nuclear structural protein 1 13062 rs1715919 MNS1 55329 15 54543577 NM_018365 NP_060835 G/T Q55P plus 24613520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 15q21.2 meiosis-specific nuclear structural protein 1 13063 rs1715919 MNS1 55329 15 54543577 NM_018365 NP_060835 G/T Q55P plus 24613520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 15q21.2 meiosis-specific nuclear structural protein 1 13064 rs1715919 MNS1 55329 15 54543577 NM_018365 NP_060835 G/T Q55P plus 24613520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q21.2 meiosis-specific nuclear structural protein 1 13065 rs1717065 ZNF585A 199704 19 42335240 NM_152655 NP_689868 C/T M412I plus 2553951 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 "HapMap,doubleHit" 19q13.13 zinc finger protein 585A 13066 rs1717065 ZNF585A 199704 19 42335240 NM_199126 NP_954577 C/T M412I plus 2553951 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 "HapMap,doubleHit" 19q13.13 zinc finger protein 585A 13067 rs1718119 P2RX7 5027 12 120077823 NM_002562 NP_002553 C/T A348T minus 2903833 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 13068 rs1718119 P2RX7 5027 12 120077823 NM_002562 NP_002553 C/T A348T minus 24357565 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 13069 rs1718119 P2RX7 5027 12 120077823 NM_002562 NP_002553 C/T A348T minus 24357565 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 13070 rs1718119 P2RX7 5027 12 120077823 NM_002562 NP_002553 C/T A348T minus 24357565 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 13071 rs1719152 CCL4 6351 17 31456777 NM_002984 NP_002975 A/T S80T plus 2556728 1303 SEQUENOM CEPH CEPH (92) 92 1 89 by doubleHit 17q12 chemokine (C-C motif) ligand 4 13072 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13073 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 901 AFFY AfAm 10 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13074 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 902 AFFY Caucasian 24 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13075 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 903 AFFY Asian 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13076 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 904 AFFY CEPH 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13077 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 905 AFFY PDpanel 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13078 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 2563480 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13079 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 23742647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13080 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 23742647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13081 rs1724577 MYO5A 4644 15 50476923 NM_000259 NP_000250 G/T E362D plus 23742647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 13082 rs1726803 POLD1 5424 19 55597122 NM_002691 NP_002682 A/G S173N plus 3177356 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.04 123 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 13083 rs1726803 POLD1 5424 19 55597122 NM_002691 NP_002682 A/G S173N plus 4480013 506 NCBI NIHPDR NIHPDR 160 0.05 123 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 13084 rs1726803 POLD1 5424 19 55597122 NM_002691 NP_002682 A/G S173N plus 4480823 693 EGP_SNPS PDR90 NIHPDR 176 0.06 123 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 13085 rs1726803 POLD1 5424 19 55597122 NM_002691 NP_002682 A/G S173N plus 4480823 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 13086 rs1731017 ABAT 18 16 8747455 NM_000663 NP_000654 C/T Q56R minus 3176147 619 WICVAR MITOGPOP6 CORIELL Mixed 38 0.42 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13087 rs1731017 ABAT 18 16 8747455 NM_000663 NP_000654 C/T Q56R minus 3248923 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.32 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13088 rs1731017 ABAT 18 16 8747455 NM_000663 NP_000654 C/T Q56R minus 10821469 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13089 rs1731017 ABAT 18 16 8747455 NM_020686 NP_065737 C/T Q56R minus 3176147 619 WICVAR MITOGPOP6 CORIELL Mixed 38 0.42 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13090 rs1731017 ABAT 18 16 8747455 NM_020686 NP_065737 C/T Q56R minus 3248923 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.32 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13091 rs1731017 ABAT 18 16 8747455 NM_020686 NP_065737 C/T Q56R minus 10821469 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 116 "HapMap,doubleHit,freq,cluster" 16p13.2 4-aminobutyrate aminotransferase 13092 rs1732263 KRTHB2 3888 12 51075212 NM_033033 NP_149022 C/G E452D plus 2572716 1303 SEQUENOM CEPH CEPH (92) 92 0.05 89 by freq 12q13 "keratin, hair, basic, 2" 13093 rs1734491 SIRT3 23410 11 220495 NM_012239 NP_036371 G/T T255N plus 2575469 1303 SEQUENOM CEPH CEPH (92) 92 0.16 89 by freq 11p15.5 sirtuin (silent mating type information regulation 2 homolog) 3 (S. cerevisiae) 13094 rs1735010 OR1E1 8387 17 3248025 NM_003553 NP_003544 C/G L144V plus 24796518 1303 SEQUENOM CEPH CEPH (92) 184 0.29 123 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 13095 rs1735010 OR1E1 8387 17 3248025 NM_003553 NP_003544 C/G L144V plus 24802849 1303 SEQUENOM CEPH CEPH (92) 184 0.35 123 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 13096 rs1735011 OR1E1 8387 17 3248069 NM_003553 NP_003544 A/G P129L plus 2576070 1303 SEQUENOM CEPH CEPH (92) 92 0.21 89 by freq 17p13.3 "olfactory receptor, family 1, subfamily E, member 1" 13097 rs1735169 ZNF7 7553 8 146037858 NM_003416 NP_003407 A/G G188R plus 5476698 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 8q24 "zinc finger protein 7 (KOX 4, clone HF.16)" 13098 rs1735169 ZNF7 7553 8 146037858 NM_003416 NP_003407 A/G G188R plus 24057079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 8q24 "zinc finger protein 7 (KOX 4, clone HF.16)" 13099 rs1735169 ZNF7 7553 8 146037858 NM_003416 NP_003407 A/G G188R plus 24057079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 8q24 "zinc finger protein 7 (KOX 4, clone HF.16)" 13100 rs1735169 ZNF7 7553 8 146037858 NM_003416 NP_003407 A/G G188R plus 24057079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 8q24 "zinc finger protein 7 (KOX 4, clone HF.16)" 13101 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2577800 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13102 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2577800 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13103 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2577800 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13104 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2577800 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 88 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13105 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2577800 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13106 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2978142 506 NCBI NIHPDR NIHPDR 86 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13107 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 2986872 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13108 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 23864684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13109 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 23864684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13110 rs1736557 FMO3 2328 1 167811738 NM_006894 NP_008825 A/G V257M plus 23864684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 13111 rs1738023 AKR7A3 22977 1 19356547 NM_012067 NP_036199 A/G N215D minus 2871801 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,submitter,freq,cluster" 1p35.1-p36.23 "aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase)" 13112 rs1738254 DNAH8 1769 6 38855748 NM_001371 NP_001362 C/T G473R minus 2580488 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 13113 rs1738254 DNAH8 1769 6 38855748 NM_001371 NP_001362 C/T G473R minus 23942748 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 13114 rs1738254 DNAH8 1769 6 38855748 NM_001371 NP_001362 C/T G473R minus 23942748 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 13115 rs1738254 DNAH8 1769 6 38855748 NM_001371 NP_001362 C/T G473R minus 23942748 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 13116 rs1748020 PADI4 23569 1 17413915 NM_012387 NP_036519 A/G S275F minus 2595326 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,doubleHit,freq,cluster" 1p36.13 "peptidyl arginine deiminase, type IV" 13117 rs1752427 GPR135 64582 14 59000256 NM_022571 NP_072093 A/G V481A plus 2602428 1303 SEQUENOM CEPH CEPH (92) 92 1 111 by doubleHit 14q23.1 G protein-coupled receptor 135 13118 rs1752428 GPR135 64582 14 59001684 NM_022571 NP_072093 G/T Q5P plus 4928650 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.22 116 "by cluster,freq" 14q23.1 G protein-coupled receptor 135 13119 rs1752428 GPR135 64582 14 59001684 NM_022571 NP_072093 G/T Q5P plus 10735027 1303 SEQUENOM CEPH CEPH (92) 92 0.48 116 "by cluster,freq" 14q23.1 G protein-coupled receptor 135 13120 rs1755403 YME1L1 10730 10 27452502 NM_014263 NP_055078 C/G S361T plus 2606536 1303 SEQUENOM CEPH CEPH (92) 92 0.06 89 by freq 10p14 YME1-like 1 (S. cerevisiae) 13121 rs1755403 YME1L1 10730 10 27452502 NM_139312 NP_647473 C/G S418T plus 2606536 1303 SEQUENOM CEPH CEPH (92) 92 0.06 89 by freq 10p14 YME1-like 1 (S. cerevisiae) 13122 rs1755403 YME1L1 10730 10 27452502 NM_139313 NP_647474 C/G S418T plus 2606536 1303 SEQUENOM CEPH CEPH (92) 92 0.06 89 by freq 10p14 YME1-like 1 (S. cerevisiae) 13123 rs1757095 TNC 3371 9 114927948 NM_002160 NP_002151 C/T Q539R plus 2609181 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 9q33 tenascin C (hexabrachion) 13124 rs1757095 TNC 3371 9 114927948 NM_002160 NP_002151 C/T Q539R plus 23531725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 9q33 tenascin C (hexabrachion) 13125 rs1757095 TNC 3371 9 114927948 NM_002160 NP_002151 C/T Q539R plus 23531725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 9q33 tenascin C (hexabrachion) 13126 rs1757095 TNC 3371 9 114927948 NM_002160 NP_002151 C/T Q539R plus 23531725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q33 tenascin C (hexabrachion) 13127 rs1758272 CNTNAP3 79937 9 39123127 NM_033655 NP_387504 A/C A628S plus 24796367 1303 SEQUENOM CEPH CEPH (92) 184 0.26 123 by freq 9p12 contactin associated protein-like 3 13128 rs1758286 CNTNAP3 79937 9 39166043 NM_033655 NP_387504 C/G R325T minus 24796369 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 by freq 9p12 contactin associated protein-like 3 13129 rs1758286 CNTNAP3 79937 9 39166043 NM_033655 NP_387504 C/G R325T minus 24803124 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 by freq 9p12 contactin associated protein-like 3 13130 rs1758567 IFNA1 3439 9 21430535 NM_024013 NP_076918 C/T V10A plus 2611175 1303 SEQUENOM CEPH CEPH (92) 92 0.11 103 by freq 9p22 "interferon, alpha 1" 13131 rs1758567 IFNA1 3439 9 21430535 NM_024013 NP_076918 C/T V10A plus 3173356 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.4 103 by freq 9p22 "interferon, alpha 1" 13132 rs1759072 RAI1 10743 17 17642140 NM_030665 NP_109590 A/T K1718I minus 2611949 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 89 HapMap 17p11.2 retinoic acid induced 1 13133 rs1759072 RAI1 10743 17 17642140 NM_030665 NP_109590 A/T K1718I minus 2611949 1303 SEQUENOM CEPH CEPH (92) 92 1 89 HapMap 17p11.2 retinoic acid induced 1 13134 rs1759073 RAI1 10743 17 17641704 NM_030665 NP_109590 C/G P1573A minus 2611950 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 17p11.2 retinoic acid induced 1 13135 rs1759073 RAI1 10743 17 17641704 NM_030665 NP_109590 C/G P1573A minus 2611950 1303 SEQUENOM CEPH CEPH (92) 92 1 89 HapMap 17p11.2 retinoic acid induced 1 13136 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 4934358 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.21 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13137 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.38 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13138 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13139 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13140 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 777 SNP500CANCER HISP1 Hispanic (23) 46 0.41 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13141 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13142 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13143 rs1760897 TEP1 7011 14 19946093 NM_007110 NP_009041 C/T S116P minus 6903958 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "HapMap,doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13144 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 2614887 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13145 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 2614887 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13146 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 2614887 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 12 0.25 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13147 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 2614887 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.22 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13148 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 3210974 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.34 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13149 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.36 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13150 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13151 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13152 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 777 SNP500CANCER HISP1 Hispanic (23) 44 0.27 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13153 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13154 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13155 rs1760898 TEP1 7011 14 19942721 NM_007110 NP_009041 A/C N307K minus 6903952 1303 SEQUENOM CEPH CEPH (92) 92 0.34 113 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 telomerase-associated protein 1 13156 rs1760903 TEP1 7011 14 19922657 NM_007110 NP_009041 C/T R1055C minus 2614892 1303 SEQUENOM CEPH CEPH (92) 92 0.35 116 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13157 rs1760903 TEP1 7011 14 19922657 NM_007110 NP_009041 C/T R1055C minus 3172662 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.18 116 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13158 rs1760903 TEP1 7011 14 19922657 NM_007110 NP_009041 C/T R1055C minus 3242144 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.43 116 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13159 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 2614893 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13160 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 3172672 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.12 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13161 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 3242145 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.42 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13162 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 6903953 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.33 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13163 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 6903953 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13164 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 6903953 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13165 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 6903953 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13166 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 6903953 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13167 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 24720766 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13168 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 24720766 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13169 rs1760904 TEP1 7011 14 19921869 NM_007110 NP_009041 C/T S1195P minus 24720766 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 14q11.2 telomerase-associated protein 1 13170 rs1766848 HUS1B 135458 6 601555 NM_148959 NP_683762 G/T H130Q plus 24415050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 13171 rs1766848 HUS1B 135458 6 601555 NM_148959 NP_683762 G/T H130Q plus 24415050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 13172 rs1766848 HUS1B 135458 6 601555 NM_148959 NP_683762 G/T H130Q plus 24415050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq" 6p25.3 HUS1 checkpoint homolog b (S. pombe) 13173 rs1769259 FBP1 2203 9 94448704 NM_000507 NP_000498 A/G R218K minus 2627448 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 121 "HapMap,submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 1" 13174 rs1769259 FBP1 2203 9 94448704 NM_000507 NP_000498 A/G R218K minus 2627448 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "HapMap,submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 1" 13175 rs1769259 FBP1 2203 9 94448704 NM_000507 NP_000498 A/G R218K minus 3950278 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "HapMap,submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 1" 13176 rs1769259 FBP1 2203 9 94448704 NM_000507 NP_000498 A/G R218K minus 3950278 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 121 "HapMap,submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 1" 13177 rs1769259 FBP1 2203 9 94448704 NM_000507 NP_000498 A/G R218K minus 3950278 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 121 "HapMap,submitter,freq,cluster" 9q22.3 "fructose-1,6-bisphosphatase 1" 13178 rs1771487 OBSCN 84033 1 224708856 NM_052843 NP_443075 C/T Q502R minus 4982153 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.15 121 "by doubleHit,freq,cluster" 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 13179 rs1772256 GPLD1 2822 6 24545424 NM_001503 NP_001494 A/G T698I plus 2632159 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 13180 rs1772256 GPLD1 2822 6 24545424 NM_001503 NP_001494 A/G T698I plus 23408994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 13181 rs1772256 GPLD1 2822 6 24545424 NM_001503 NP_001494 A/G T698I plus 23408994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 13182 rs1772256 GPLD1 2822 6 24545424 NM_001503 NP_001494 A/G T698I plus 23408994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 13183 rs1776148 EXO1 9156 1 238368586 NM_003686 NP_003677 A/G E670G plus 5604845 693 EGP_SNPS PDR90 NIHPDR 180 0.32 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13184 rs1776148 EXO1 9156 1 238368586 NM_003686 NP_003677 A/G E670G plus 24635540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13185 rs1776148 EXO1 9156 1 238368586 NM_003686 NP_003677 A/G E670G plus 24635540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13186 rs1776148 EXO1 9156 1 238368586 NM_003686 NP_003677 A/G E670G plus 24635540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13187 rs1776148 EXO1 9156 1 238368586 NM_006027 NP_006018 A/G E670G plus 5604845 693 EGP_SNPS PDR90 NIHPDR 180 0.32 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13188 rs1776148 EXO1 9156 1 238368586 NM_006027 NP_006018 A/G E670G plus 24635540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13189 rs1776148 EXO1 9156 1 238368586 NM_006027 NP_006018 A/G E670G plus 24635540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13190 rs1776148 EXO1 9156 1 238368586 NM_006027 NP_006018 A/G E670G plus 24635540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13191 rs1776148 EXO1 9156 1 238368586 NM_130398 NP_569082 A/G E670G plus 5604845 693 EGP_SNPS PDR90 NIHPDR 180 0.32 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13192 rs1776148 EXO1 9156 1 238368586 NM_130398 NP_569082 A/G E670G plus 24635540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13193 rs1776148 EXO1 9156 1 238368586 NM_130398 NP_569082 A/G E670G plus 24635540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13194 rs1776148 EXO1 9156 1 238368586 NM_130398 NP_569082 A/G E670G plus 24635540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 exonuclease 1 13195 rs1778540 VN1R5 317705 1 243745550 NM_173858 NP_776257 C/T *46Q plus 23206668 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q44 vomeronasal 1 receptor 5 13196 rs1778540 VN1R5 317705 1 243745550 NM_173858 NP_776257 C/T *46Q plus 23206668 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 1q44 vomeronasal 1 receptor 5 13197 rs1778540 VN1R5 317705 1 243745550 NM_173858 NP_776257 C/T *46Q plus 23206668 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q44 vomeronasal 1 receptor 5 13198 rs1782360 LRBA 987 4 152131198 NM_006726 NP_006717 C/G A1090G minus 2646079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 89 "HapMap,submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 13199 rs1782360 LRBA 987 4 152131198 NM_006726 NP_006717 C/G A1090G minus 2646079 1303 SEQUENOM CEPH CEPH (92) 92 0.05 89 "HapMap,submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 13200 rs1783147 PKHD1L1 93035 8 110561016 NM_177531 NP_803875 C/G H3050Q minus 3047932 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13201 rs1783147 PKHD1L1 93035 8 110561016 NM_177531 NP_803875 C/G H3050Q minus 24544228 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13202 rs1783147 PKHD1L1 93035 8 110561016 NM_177531 NP_803875 C/G H3050Q minus 24544228 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13203 rs1783147 PKHD1L1 93035 8 110561016 NM_177531 NP_803875 C/G H3050Q minus 24544228 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13204 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 2647398 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13205 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 3212277 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13206 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 17969032 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13207 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 24084416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13208 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 24084416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13209 rs1783174 PKHD1L1 93035 8 110608362 NM_177531 NP_803875 A/G V4220I plus 24084416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 13210 rs1784423 MMP20 9313 11 101982605 NM_004771 NP_004762 C/T V275A minus 24072033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 13211 rs1784423 MMP20 9313 11 101982605 NM_004771 NP_004762 C/T V275A minus 24072033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 13212 rs1784423 MMP20 9313 11 101982605 NM_004771 NP_004762 C/T V275A minus 24072033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 13213 rs1784423 MMP20 9313 11 101982605 NM_004771 NP_004762 C/T V275A minus 28446851 693 EGP_SNPS PDR90 NIHPDR 166 0.34 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 13214 rs1784424 MMP20 9313 11 101982587 NM_004771 NP_004762 A/C T281N minus 28446852 693 EGP_SNPS PDR90 NIHPDR 162 0.34 123 "by doubleHit,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 13215 rs1785506 UBAP2 55833 9 34007106 NM_018449 NP_060919 A/G R14Q minus 4966573 738 YUSUKE JBIC-ALLELE Japanese (752) 896 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13216 rs1785506 UBAP2 55833 9 34007106 NM_018449 NP_060919 A/G R14Q minus 10499238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13217 rs1785506 UBAP2 55833 9 34007106 NM_018449 NP_060919 A/G R14Q minus 23551713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13218 rs1785506 UBAP2 55833 9 34007106 NM_018449 NP_060919 A/G R14Q minus 23551713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 18 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13219 rs1785506 UBAP2 55833 9 34007106 NM_018449 NP_060919 A/G R14Q minus 23551713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13220 rs1785506 UBAP2 55833 9 34007106 NM_020867 NP_065918 A/G R14Q minus 4966573 738 YUSUKE JBIC-ALLELE Japanese (752) 896 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13221 rs1785506 UBAP2 55833 9 34007106 NM_020867 NP_065918 A/G R14Q minus 10499238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13222 rs1785506 UBAP2 55833 9 34007106 NM_020867 NP_065918 A/G R14Q minus 23551713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13223 rs1785506 UBAP2 55833 9 34007106 NM_020867 NP_065918 A/G R14Q minus 23551713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 18 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13224 rs1785506 UBAP2 55833 9 34007106 NM_020867 NP_065918 A/G R14Q minus 23551713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13225 rs1785506 UBAP2 55833 9 34007106 NM_148171 NP_680476 A/G R14Q minus 4966573 738 YUSUKE JBIC-ALLELE Japanese (752) 896 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13226 rs1785506 UBAP2 55833 9 34007106 NM_148171 NP_680476 A/G R14Q minus 10499238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13227 rs1785506 UBAP2 55833 9 34007106 NM_148171 NP_680476 A/G R14Q minus 23551713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13228 rs1785506 UBAP2 55833 9 34007106 NM_148171 NP_680476 A/G R14Q minus 23551713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 18 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13229 rs1785506 UBAP2 55833 9 34007106 NM_148171 NP_680476 A/G R14Q minus 23551713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.2 ubiquitin associated protein 2 13230 rs1785934 STATIP1 55250 18 31972324 NM_018255 NP_060725 G/T T128P minus 2650765 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 13231 rs1785934 STATIP1 55250 18 31972324 NM_018255 NP_060725 G/T T128P minus 2650765 1303 SEQUENOM CEPH CEPH (92) 92 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 13232 rs1785934 STATIP1 55250 18 31972324 NM_018255 NP_060725 G/T T128P minus 24674643 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 13233 rs1785934 STATIP1 55250 18 31972324 NM_018255 NP_060725 G/T T128P minus 24674643 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 13234 rs1785934 STATIP1 55250 18 31972324 NM_018255 NP_060725 G/T T128P minus 24674643 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 13235 rs1788799 NPC1 4864 18 19378943 NM_000271 NP_000262 C/G M642I plus 2654188 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 13236 rs1788799 NPC1 4864 18 19378943 NM_000271 NP_000262 C/G M642I plus 24710397 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 13237 rs1788799 NPC1 4864 18 19378943 NM_000271 NP_000262 C/G M642I plus 24710397 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 13238 rs1788799 NPC1 4864 18 19378943 NM_000271 NP_000262 C/G M642I plus 24710397 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 13239 rs1792120 SORL1 6653 11 120996992 NM_003105 NP_003096 A/G V1967I plus 2658022 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 13240 rs1792120 SORL1 6653 11 120996992 NM_003105 NP_003096 A/G V1967I plus 2658022 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 13241 rs1792120 SORL1 6653 11 120996992 NM_003105 NP_003096 A/G V1967I plus 23681707 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 13242 rs1792120 SORL1 6653 11 120996992 NM_003105 NP_003096 A/G V1967I plus 23681707 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 13243 rs1792120 SORL1 6653 11 120996992 NM_003105 NP_003096 A/G V1967I plus 23681707 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 13244 rs1792836 CD3G 917 11 117728392 NM_000073 NP_000064 G/T *183G plus 2658750 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 11q23 "CD3G antigen, gamma polypeptide (TiT3 complex)" 13245 rs1792836 CD3G 917 11 117728392 NM_000073 NP_000064 G/T *183G plus 2658750 1303 SEQUENOM CEPH CEPH (92) 92 1 89 HapMap 11q23 "CD3G antigen, gamma polypeptide (TiT3 complex)" 13246 rs1793174 AMICA 120425 11 117579547 NM_153206 NP_694938 A/G V183A plus 24567110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 13247 rs1793174 AMICA 120425 11 117579547 NM_153206 NP_694938 A/G V183A plus 24567110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 13248 rs1793174 AMICA 120425 11 117579547 NM_153206 NP_694938 A/G V183A plus 24567110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 13249 rs1794108 PSMD13 5719 11 238818 NM_002817 NP_002808 A/G G204E plus 2660191 1303 SEQUENOM CEPH CEPH (92) 92 0.02 89 by freq 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 13250 rs1794108 PSMD13 5719 11 238818 NM_175932 NP_787128 A/G G179E plus 2660191 1303 SEQUENOM CEPH CEPH (92) 92 0.02 89 by freq 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 13251 rs1796993 TMC1 117531 9 72544992 NM_138691 NP_619636 C/T E81K minus 24023405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.2 123 "by doubleHit,freq,cluster" 9q21.12 transmembrane channel-like 1 13252 rs1796993 TMC1 117531 9 72544992 NM_138691 NP_619636 C/T E81K minus 24023405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "by doubleHit,freq,cluster" 9q21.12 transmembrane channel-like 1 13253 rs1796993 TMC1 117531 9 72544992 NM_138691 NP_619636 C/T E81K minus 24023405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,freq,cluster" 9q21.12 transmembrane channel-like 1 13254 rs1798192 GPR109B 8843 12 121725648 NM_006018 NP_006009 A/C T173P minus 2665808 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 116 "HapMap,doubleHit,submitter,freq,cluster" 12q24.31 G protein-coupled receptor 109B 13255 rs1798192 GPR109B 8843 12 121725648 NM_006018 NP_006009 A/C T173P minus 2665808 1303 SEQUENOM CEPH CEPH (92) 92 0.4 116 "HapMap,doubleHit,submitter,freq,cluster" 12q24.31 G protein-coupled receptor 109B 13256 rs1798192 GPR109B 8843 12 121725648 NM_006018 NP_006009 A/C T173P minus 4927543 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.44 116 "HapMap,doubleHit,submitter,freq,cluster" 12q24.31 G protein-coupled receptor 109B 13257 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 5586927 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.39 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13258 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 5586927 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.47 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13259 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 5586927 776 SNP500CANCER AFR1 African / African-American (24) 48 0.35 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13260 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 5586927 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13261 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 5586927 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13262 rs1799725 SOD2 6648 6 160084283 NM_000636 NP_000627 C/T V16A minus 7990815 693 EGP_SNPS PDR90 NIHPDR 160 0.48 123 "by cluster,freq" 6q25.3 "superoxide dismutase 2, mitochondrial" 13263 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 3176720 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13264 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 3176720 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.05 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13265 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 3176720 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13266 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 3176720 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.31 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13267 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 3254964 506 NCBI NIHPDR NIHPDR 814 0.13 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13268 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 4473975 693 EGP_SNPS PDR90 NIHPDR 176 0.12 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13269 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 4473975 1303 SEQUENOM CEPH CEPH (92) 92 0.05 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13270 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 5586972 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.13 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13271 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 5586972 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13272 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 5586972 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13273 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 5586972 777 SNP500CANCER HISP1 Hispanic (23) 46 0.17 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13274 rs1799782 XRCC1 7515 19 48749414 NM_006297 NP_006288 C/T R194W minus 5586972 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 13275 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 4385668 693 EGP_SNPS PDR90 NIHPDR 164 0.24 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13276 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 4385668 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13277 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 6903793 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.24 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13278 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 6903793 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.41 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13279 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 6903793 776 SNP500CANCER AFR1 African / African-American (24) 46 0.06 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13280 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 6903793 777 SNP500CANCER HISP1 Hispanic (23) 44 0.36 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13281 rs1799793 ERCC2 2068 19 50559099 NM_000400 NP_000391 A/G D312N minus 6903793 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.06 121 "by doubleHit,freq,cluster" 19q13.3 "excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)" 13282 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 3172642 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.02 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13283 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 4384382 693 EGP_SNPS PDR90 NIHPDR 174 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13284 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13285 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13286 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13287 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13288 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13289 rs1799802 ERCC4 2072 16 13935582 NM_005236 NP_005227 C/T P379S plus 5586511 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13290 rs1799806 ACHE 43 7 100133309 NM_015831 NP_056646 C/G P592R minus 24332885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 7q22 acetylcholinesterase (YT blood group) 13291 rs1799806 ACHE 43 7 100133309 NM_015831 NP_056646 C/G P592R minus 24332885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 7q22 acetylcholinesterase (YT blood group) 13292 rs1799806 ACHE 43 7 100133309 NM_015831 NP_056646 C/G P592R minus 24332885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 7q22 acetylcholinesterase (YT blood group) 13293 rs1799807 BCHE 590 3 167031231 NM_000055 NP_000046 A/G D98G minus 23355976 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 3q26.1-q26.2 butyrylcholinesterase 13294 rs1799807 BCHE 590 3 167031231 NM_000055 NP_000046 A/G D98G minus 23355976 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 3q26.1-q26.2 butyrylcholinesterase 13295 rs1799807 BCHE 590 3 167031231 NM_000055 NP_000046 A/G D98G minus 23355976 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 3q26.1-q26.2 butyrylcholinesterase 13296 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 5586574 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.04 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13297 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 5586574 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13298 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 5586574 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13299 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 5586574 777 SNP500CANCER HISP1 Hispanic (23) 44 0.05 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13300 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 5586574 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13301 rs1799811 GSTP1 2950 11 67110155 NM_000852 NP_000843 C/T A114V plus 12585359 693 EGP_SNPS PDR90 NIHPDR 176 0.02 117 "by cluster,freq" 11q13 glutathione S-transferase pi 13302 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 5586387 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.03 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13303 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 5586387 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.07 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13304 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 5586387 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13305 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 5586387 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13306 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 5586387 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13307 rs1799814 CYP1A1 1543 15 72800040 NM_000499 NP_000490 A/C T461N minus 24796499 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 "by cluster,freq" 15q22-q24 "cytochrome P450, family 1, subfamily A, polypeptide 1" 13308 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 3172858 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13309 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 3172858 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13310 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 4923984 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13311 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 16403714 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13312 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 24239280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13313 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 24239280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13314 rs1799821 CPT2 1376 1 53388469 NM_000098 NP_000089 A/G V368I plus 24239280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 1p32 carnitine palmitoyltransferase II 13315 rs1799822 CPT2 1376 1 53391250 NM_000098 NP_000089 A/G M647V plus 24239285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq" 1p32 carnitine palmitoyltransferase II 13316 rs1799822 CPT2 1376 1 53391250 NM_000098 NP_000089 A/G M647V plus 24239285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq" 1p32 carnitine palmitoyltransferase II 13317 rs1799822 CPT2 1376 1 53391250 NM_000098 NP_000089 A/G M647V plus 24239285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq" 1p32 carnitine palmitoyltransferase II 13318 rs1799841 CST5 1473 20 23808178 NM_001900 NP_001891 C/T C46R minus 2985062 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.41 123 "by doubleHit,freq,cluster" 20p11.21 cystatin D 13319 rs1799841 CST5 1473 20 23808178 NM_001900 NP_001891 C/T C46R minus 24057290 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 20p11.21 cystatin D 13320 rs1799841 CST5 1473 20 23808178 NM_001900 NP_001891 C/T C46R minus 24057290 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 20p11.21 cystatin D 13321 rs1799841 CST5 1473 20 23808178 NM_001900 NP_001891 C/T C46R minus 24057290 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20p11.21 cystatin D 13322 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 5586420 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.06 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13323 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 5586420 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13324 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 5586420 776 SNP500CANCER AFR1 African / African-American (24) 48 1 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13325 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 5586420 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13326 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 5586420 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13327 rs1799853 CYP2C9 1559 10 96692037 NM_000771 NP_000762 C/T R144C plus 12588496 693 EGP_SNPS PDR90 NIHPDR 180 0.06 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 13328 rs1799891 DNASE1 1773 16 3647024 NM_005223 NP_005214 C/G P154A plus 8819951 506 NCBI NIHPDR NIHPDR 168 0.02 119 "by cluster,freq" 16p13.3 deoxyribonuclease I 13329 rs1799891 DNASE1 1773 16 3647024 NM_005223 NP_005214 C/G P154A plus 8819951 720 UWGC LupusClinical 164 0.01 119 "by cluster,freq" 16p13.3 deoxyribonuclease I 13330 rs1799899 TF 7018 3 134958510 NM_001063 NP_001054 A/G G277S plus 8820467 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 3q22.1 transferrin 13331 rs1799899 TF 7018 3 134958510 NM_001063 NP_001054 A/G G277S plus 24796201 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 "by cluster,freq" 3q22.1 transferrin 13332 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 5586800 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.28 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13333 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 5586800 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.34 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13334 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 5586800 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13335 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 5586800 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13336 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 5586800 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13337 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 17965718 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13338 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 24664953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13339 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 24664953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13340 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 24664953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13341 rs1799930 NAT2 10 8 18302383 NM_000015 NP_000006 A/G R197Q plus 24796684 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 "by submitter,freq,cluster" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13342 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 5586794 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.06 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13343 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 5586794 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13344 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 5586794 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13345 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 5586794 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13346 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 5586794 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.2 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13347 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 24180357 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13348 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 24180357 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13349 rs1799931 NAT2 10 8 18302650 NM_000015 NP_000006 A/G G286E plus 24180357 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 13350 rs1799938 CACNG1 786 17 62482766 NM_000727 NP_000718 A/G G196S plus 24593660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 17q24 "calcium channel, voltage-dependent, gamma subunit 1" 13351 rs1799938 CACNG1 786 17 62482766 NM_000727 NP_000718 A/G G196S plus 24593660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 17q24 "calcium channel, voltage-dependent, gamma subunit 1" 13352 rs1799938 CACNG1 786 17 62482766 NM_000727 NP_000718 A/G G196S plus 24593660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 17q24 "calcium channel, voltage-dependent, gamma subunit 1" 13353 rs1799938 CACNG1 786 17 62482766 NM_000727 NP_000718 A/G G196S plus 24796545 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 by freq 17q24 "calcium channel, voltage-dependent, gamma subunit 1" 13354 rs1799938 CACNG1 786 17 62482766 NM_000727 NP_000718 A/G G196S plus 24803511 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 by freq 17q24 "calcium channel, voltage-dependent, gamma subunit 1" 13355 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 4967328 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13356 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 12675603 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.18 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13357 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 12675603 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.16 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13358 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 12675603 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13359 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 12675603 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13360 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 12675603 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13361 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 24542367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13362 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 24542367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13363 rs1799939 RET 5979 10 42930125 NM_020630 NP_065681 A/G G691S plus 24542367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13364 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 4967328 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13365 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 12675603 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.18 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13366 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 12675603 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.16 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13367 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 12675603 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13368 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 12675603 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13369 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 12675603 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13370 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 24542367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13371 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 24542367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13372 rs1799939 RET 5979 10 42930125 NM_020975 NP_066124 A/G G691S plus 24542367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 10q11.2 "ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)" 13373 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 5586315 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13374 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 5586315 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13375 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 5586315 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13376 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 5586315 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13377 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 5586315 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13378 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 16355805 693 EGP_SNPS PDR90 NIHPDR 174 0.05 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13379 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 16355805 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13380 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 24179877 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13381 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 24179877 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13382 rs1799944 BRCA2 675 13 31809463 NM_000059 NP_000050 A/G N991D plus 24179877 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by submitter,freq,cluster" 13q12.3 "breast cancer 2, early onset" 13383 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13384 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13385 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13386 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13387 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13388 rs1799945 HFE 3077 6 26199158 NM_000410 NP_000401 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13389 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13390 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13391 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13392 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13393 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13394 rs1799945 HFE 3077 6 26199158 NM_139002 NP_620571 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13395 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13396 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13397 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13398 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13399 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13400 rs1799945 HFE 3077 6 26199158 NM_139003 NP_620572 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13401 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13402 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13403 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13404 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13405 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13406 rs1799945 HFE 3077 6 26199158 NM_139004 NP_620573 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13407 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13408 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13409 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13410 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13411 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13412 rs1799945 HFE 3077 6 26199158 NM_139005 NP_620574 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13413 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13414 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13415 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13416 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13417 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13418 rs1799945 HFE 3077 6 26199158 NM_139006 NP_620575 C/G H63D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13419 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13420 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 113 "by cluster,freq" 6p21.3 hemochromatosis 13421 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13422 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 6p21.3 hemochromatosis 13423 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 "by cluster,freq" 6p21.3 hemochromatosis 13424 rs1799945 HFE 3077 6 26199158 NM_139009 NP_620578 C/G H40D plus 5586581 1303 SEQUENOM CEPH CEPH (92) 92 0.1 113 "by cluster,freq" 6p21.3 hemochromatosis 13425 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13426 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13427 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13428 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13429 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13430 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13431 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13432 rs1799950 BRCA1 672 17 38500007 NM_007294 NP_009225 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13433 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13434 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13435 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13436 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13437 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13438 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13439 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13440 rs1799950 BRCA1 672 17 38500007 NM_007295 NP_009226 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13441 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13442 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13443 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13444 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13445 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13446 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13447 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13448 rs1799950 BRCA1 672 17 38500007 NM_007296 NP_009227 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13449 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13450 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13451 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13452 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13453 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13454 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13455 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13456 rs1799950 BRCA1 672 17 38500007 NM_007297 NP_009228 A/G Q60R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13457 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13458 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13459 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13460 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13461 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13462 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13463 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13464 rs1799950 BRCA1 672 17 38500007 NM_007299 NP_009230 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13465 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13466 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13467 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13468 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13469 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13470 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13471 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13472 rs1799950 BRCA1 672 17 38500007 NM_007300 NP_009231 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13473 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13474 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13475 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13476 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13477 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13478 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13479 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13480 rs1799950 BRCA1 672 17 38500007 NM_007301 NP_009232 A/G Q356R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13481 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13482 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13483 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13484 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13485 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13486 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13487 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 5586298 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13488 rs1799950 BRCA1 672 17 38500007 NM_007302 NP_009233 A/G Q315R minus 8486253 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "HapMap,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13489 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13490 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13491 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13492 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13493 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13494 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 5586316 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13495 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 24406574 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13496 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 24406574 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13497 rs1799954 BRCA2 675 13 31812592 NM_000059 NP_000050 C/T R2034C plus 24406574 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 13498 rs1799959 ROM1 6094 11 62137682 NM_000327 NP_000318 C/G G118A plus 7970420 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 11q13 retinal outer segment membrane protein 1 13499 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13500 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13501 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13502 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13503 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13504 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13505 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13506 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13507 rs1799966 BRCA1 672 17 38476620 NM_007294 NP_009225 A/G S1613G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13508 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13509 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13510 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13511 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13512 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13513 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13514 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13515 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13516 rs1799966 BRCA1 672 17 38476620 NM_007295 NP_009226 A/G S1613G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13517 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13518 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13519 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13520 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13521 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13522 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13523 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13524 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13525 rs1799966 BRCA1 672 17 38476620 NM_007296 NP_009227 A/G S1613G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13526 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13527 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13528 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13529 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13530 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13531 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13532 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13533 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13534 rs1799966 BRCA1 672 17 38476620 NM_007297 NP_009228 A/G S1317G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13535 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13536 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13537 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13538 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13539 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13540 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13541 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13542 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13543 rs1799966 BRCA1 672 17 38476620 NM_007298 NP_009229 A/G S430G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13544 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13545 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13546 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13547 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13548 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13549 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13550 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13551 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13552 rs1799966 BRCA1 672 17 38476620 NM_007302 NP_009233 A/G S1572G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13553 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13554 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13555 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13556 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13557 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13558 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13559 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13560 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13561 rs1799966 BRCA1 672 17 38476620 NM_007303 NP_009234 A/G S471G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13562 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13563 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13564 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13565 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13566 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13567 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13568 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13569 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13570 rs1799966 BRCA1 672 17 38476620 NM_007304 NP_009235 A/G S509G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13571 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 3172565 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13572 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 5586301 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13573 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 5586301 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13574 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 5586301 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13575 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 5586301 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13576 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 5586301 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13577 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 8486339 693 EGP_SNPS PDR90 NIHPDR 180 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13578 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 8486339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13579 rs1799966 BRCA1 672 17 38476620 NM_007305 NP_009236 A/G S469G minus 8486339 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 17q21 "breast cancer 1, early onset" 13580 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13581 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13582 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13583 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13584 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13585 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13586 rs1799967 BRCA1 672 17 38476501 NM_007294 NP_009225 A/G M1652I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13587 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13588 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13589 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13590 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13591 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13592 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13593 rs1799967 BRCA1 672 17 38476501 NM_007295 NP_009226 A/G M1652I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13594 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13595 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13596 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13597 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13598 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13599 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13600 rs1799967 BRCA1 672 17 38476501 NM_007296 NP_009227 A/G M1652I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13601 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13602 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13603 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13604 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13605 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13606 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13607 rs1799967 BRCA1 672 17 38476501 NM_007297 NP_009228 A/G M1356I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13608 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13609 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13610 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13611 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13612 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13613 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13614 rs1799967 BRCA1 672 17 38476501 NM_007298 NP_009229 A/G M469I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13615 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13616 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13617 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13618 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13619 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13620 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13621 rs1799967 BRCA1 672 17 38476501 NM_007302 NP_009233 A/G M1611I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13622 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13623 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13624 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13625 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13626 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13627 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13628 rs1799967 BRCA1 672 17 38476501 NM_007303 NP_009234 A/G M510I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13629 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13630 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13631 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13632 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13633 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13634 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13635 rs1799967 BRCA1 672 17 38476501 NM_007304 NP_009235 A/G M548I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13636 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 3176015 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13637 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13638 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13639 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13640 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13641 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13642 rs1799967 BRCA1 672 17 38476501 NM_007305 NP_009236 A/G M508I minus 5586302 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 17q21 "breast cancer 1, early onset" 13643 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 3176192 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.03 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13644 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 7985467 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13645 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 7985467 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13646 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 7985467 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13647 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 16360961 649 FHCRC POPU1 USA (20) 40 0.05 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13648 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 24597778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13649 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 24597778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13650 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 24597778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13651 rs1799969 ICAM1 3383 19 10255792 NM_000201 NP_000192 A/G G241R plus 24796639 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 13652 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 3220288 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.42 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13653 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 12675567 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.18 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13654 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 12675567 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.15 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13655 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 12675567 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13656 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 12675567 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13657 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 12675567 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13658 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 23981705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13659 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 23981705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13660 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 23981705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13661 rs1799971 OPRM1 4988 6 154452911 NM_000914 NP_000905 A/G N40D plus 28447285 914 HG_BONN_CNS_SNPS EURO96 European 176 0.12 123 "by doubleHit,submitter,freq,cluster" 6q24-q25 "opioid receptor, mu 1" 13662 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 12675575 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.07 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13663 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 12675575 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13664 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 12675575 776 SNP500CANCER AFR1 African / African-American (24) 48 0.21 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13665 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 12675575 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13666 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 12675575 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13667 rs1799972 OPRM1 4988 6 154452810 NM_000914 NP_000905 C/T A6V plus 28447284 914 HG_BONN_CNS_SNPS EURO96 European 174 0.01 123 "by cluster,freq" 6q24-q25 "opioid receptor, mu 1" 13668 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 3256179 506 NCBI NIHPDR NIHPDR 76 0.14 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13669 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.14 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13670 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13671 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13672 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 777 SNP500CANCER HISP1 Hispanic (23) 44 0.3 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13673 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13674 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 5586769 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.33 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13675 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 6312969 693 EGP_SNPS PDR90 NIHPDR 176 0.18 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13676 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 24310960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13677 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 24310960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13678 rs1799977 MLH1 4292 3 37028572 NM_000249 NP_000240 A/G I219V plus 24310960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 13679 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 3332937 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13680 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 3332937 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13681 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 5112360 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.14 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13682 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 5112360 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 22 0.5 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13683 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12580011 889 PHARMGKB_PARC PA128275074 94 0.3 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13684 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12675558 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.19 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13685 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12675558 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.33 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13686 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12675558 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13687 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12675558 777 SNP500CANCER HISP1 Hispanic (23) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13688 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 12675558 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.12 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13689 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 16339953 1158 PHARMGKB_SERM PA129968859 58 0.22 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13690 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 16339956 1159 PHARMGKB_SERM PA129966788 458 0.23 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13691 rs1799983 NOS3 4846 7 150133759 NM_000603 NP_000594 G/T D298E plus 24796688 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 "HapMap,doubleHit,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 13692 rs1799990 PRNP 5621 20 4628251 NM_000311 NP_000302 A/G M129V plus 12495190 1303 SEQUENOM CEPH CEPH (92) 92 0.44 116 "by doubleHit,freq,cluster" 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 13693 rs1799990 PRNP 5621 20 4628251 NM_183079 NP_898902 A/G M129V plus 12495190 1303 SEQUENOM CEPH CEPH (92) 92 0.44 116 "by doubleHit,freq,cluster" 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 13694 rs1799999 PPP1R3A 5506 7 113112385 NM_002711 NP_002702 G/T D905Y minus 12587312 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 13695 rs1799999 PPP1R3A 5506 7 113112385 NM_002711 NP_002702 G/T D905Y minus 12587312 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.09 123 "HapMap,freq,cluster" 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 13696 rs1799999 PPP1R3A 5506 7 113112385 NM_002711 NP_002702 G/T D905Y minus 23904296 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 13697 rs1799999 PPP1R3A 5506 7 113112385 NM_002711 NP_002702 G/T D905Y minus 23904296 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,freq,cluster" 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 13698 rs1799999 PPP1R3A 5506 7 113112385 NM_002711 NP_002702 G/T D905Y minus 23904296 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 13699 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13700 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13701 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13702 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13703 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13704 rs1800030 FUT2 2524 19 53898907 NM_000511 NP_000502 A/G W297X plus 7986242 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 113 "HapMap,submitter,freq,cluster" 19q13.3 fucosyltransferase 2 (secretor status included) 13705 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13706 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13707 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13708 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13709 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13710 rs1800054 ATM 472 11 107603786 NM_000051 NP_000042 C/G S49C plus 5586262 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13711 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 3188980 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13712 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 4479867 506 NCBI NIHPDR NIHPDR 176 0.01 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13713 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6903668 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13714 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6903668 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13715 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6903668 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13716 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6903668 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13717 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6903668 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13718 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6904892 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13719 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 6904892 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13720 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 24550884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13721 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 24550884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13722 rs1800056 ATM 472 11 107643213 NM_000051 NP_000042 C/T F858L plus 24550884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13723 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 2978404 506 NCBI NIHPDR NIHPDR 94 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13724 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 4325149 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13725 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 4479855 506 NCBI NIHPDR NIHPDR 178 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13726 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13727 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13728 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 776 SNP500CANCER AFR1 African / African-American (24) 44 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13729 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 777 SNP500CANCER HISP1 Hispanic (23) 44 0.05 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13730 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13731 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 5586265 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13732 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 6904922 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13733 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 24550926 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13734 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 24550926 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13735 rs1800057 ATM 472 11 107648666 NM_000051 NP_000042 C/G P1054R plus 24550926 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13736 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 4479892 506 NCBI NIHPDR NIHPDR 156 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13737 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13738 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13739 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13740 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13741 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13742 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 5586268 1303 SEQUENOM CEPH CEPH (92) 92 0.03 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13743 rs1800058 ATM 472 11 107665560 NM_000051 NP_000042 C/T L1420F plus 6904956 693 EGP_SNPS PDR90 NIHPDR 164 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13744 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 4479892 506 NCBI NIHPDR NIHPDR 156 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13745 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13746 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13747 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13748 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13749 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13750 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 5586268 1303 SEQUENOM CEPH CEPH (92) 92 0.03 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13751 rs1800058 ATM 472 11 107665560 NM_138292 NP_612149 C/T L72F plus 6904956 693 EGP_SNPS PDR90 NIHPDR 164 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13752 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 4479892 506 NCBI NIHPDR NIHPDR 156 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13753 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13754 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13755 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13756 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13757 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13758 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 5586268 1303 SEQUENOM CEPH CEPH (92) 92 0.03 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13759 rs1800058 ATM 472 11 107665560 NM_138293 NP_612150 C/T L72F plus 6904956 693 EGP_SNPS PDR90 NIHPDR 164 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 13760 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 2924072 506 NCBI NIHPDR NIHPDR 84 0.06 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13761 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 4384388 693 EGP_SNPS PDR90 NIHPDR 150 0.05 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13762 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 4384388 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13763 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 4384388 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13764 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 5586510 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13765 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 5586510 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13766 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 5586510 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13767 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 5586510 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13768 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 5586510 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13769 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 24519993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13770 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 24519993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13771 rs1800067 ERCC4 2072 16 13936534 NM_005236 NP_005227 A/G R415Q plus 24519993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13772 rs1800069 ERCC4 2072 16 13949071 NM_005236 NP_005227 C/T I706T plus 2924076 506 NCBI NIHPDR NIHPDR 82 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13773 rs1800069 ERCC4 2072 16 13949071 NM_005236 NP_005227 C/T I706T plus 4384469 693 EGP_SNPS PDR90 NIHPDR 166 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13774 rs1800069 ERCC4 2072 16 13949071 NM_005236 NP_005227 C/T I706T plus 4384469 1303 SEQUENOM CEPH CEPH (92) 92 1 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13775 rs1800076 CFTR 1080 7 116743098 NM_000492 NP_000483 A/G R75Q plus 24796347 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13776 rs1800098 CFTR 1080 7 116824405 NM_000492 NP_000483 C/G G576A plus 24458873 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13777 rs1800098 CFTR 1080 7 116824405 NM_000492 NP_000483 C/G G576A plus 24458873 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13778 rs1800098 CFTR 1080 7 116824405 NM_000492 NP_000483 C/G G576A plus 24458873 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13779 rs1800098 CFTR 1080 7 116824405 NM_000492 NP_000483 C/G G576A plus 24796349 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13780 rs1800100 CFTR 1080 7 116826174 NM_000492 NP_000483 C/T R668C plus 24458917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13781 rs1800100 CFTR 1080 7 116826174 NM_000492 NP_000483 C/T R668C plus 24458917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13782 rs1800100 CFTR 1080 7 116826174 NM_000492 NP_000483 C/T R668C plus 24458917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13783 rs1800100 CFTR 1080 7 116826174 NM_000492 NP_000483 C/T R668C plus 24796350 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 "by submitter,freq" 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13784 rs1800107 CFTR 1080 7 116837605 NM_000492 NP_000483 G/T S909I plus 24796351 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 7q31.2 "cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)" 13785 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 2924084 506 NCBI NIHPDR NIHPDR 88 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13786 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 4384475 693 EGP_SNPS PDR90 NIHPDR 164 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13787 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 4384475 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13788 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 5586516 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13789 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 5586516 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13790 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 5586516 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13791 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 5586516 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13792 rs1800124 ERCC4 2072 16 13949578 NM_005236 NP_005227 A/G E875G plus 5586516 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 13793 rs1800127 LRP1 4035 12 55825349 NM_002332 NP_002323 C/T A217V plus 24796453 1303 SEQUENOM CEPH CEPH (92) 184 0.19 123 by freq 12q13-q14 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 13794 rs1800197 PROP1 5626 5 177352573 NM_006261 NP_006252 A/G A142T minus 24314333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "by doubleHit,freq,cluster" 5q35.3 "prophet of Pit1, paired-like homeodomain transcription factor" 13795 rs1800197 PROP1 5626 5 177352573 NM_006261 NP_006252 A/G A142T minus 24314333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 5q35.3 "prophet of Pit1, paired-like homeodomain transcription factor" 13796 rs1800197 PROP1 5626 5 177352573 NM_006261 NP_006252 A/G A142T minus 24314333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 5q35.3 "prophet of Pit1, paired-like homeodomain transcription factor" 13797 rs1800209 CLN5 1203 13 76472984 NM_006493 NP_006484 A/G K368R plus 23435516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 13q21.1-q32 "ceroid-lipofuscinosis, neuronal 5" 13798 rs1800209 CLN5 1203 13 76472984 NM_006493 NP_006484 A/G K368R plus 23435516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 13q21.1-q32 "ceroid-lipofuscinosis, neuronal 5" 13799 rs1800209 CLN5 1203 13 76472984 NM_006493 NP_006484 A/G K368R plus 23435516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 13q21.1-q32 "ceroid-lipofuscinosis, neuronal 5" 13800 rs1800215 COL1A1 1277 17 45620494 NM_000088 NP_000079 A/G T1075A minus 12568584 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1860 0.02 121 "by cluster,freq" 17q21.3-q22.1 "collagen, type I, alpha 1" 13801 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 5003731 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.26 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13802 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 5003731 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13803 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 16338437 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 12 0.25 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13804 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 22886917 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13805 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 24314634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13806 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 24314634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13807 rs1800255 COL3A1 1281 2 189689586 NM_000090 NP_000081 A/G A698T plus 24314634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 13808 rs1800282 FANCA 2175 16 88410508 NM_000135 NP_000126 A/T V6D minus 24803515 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 13809 rs1800299 GAA 2548 17 75693251 NM_000152 NP_000143 A/G D91N plus 24803516 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 by freq 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13810 rs1800307 GAA 2548 17 75700466 NM_000152 NP_000143 A/G G576S plus 3251861 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 100 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13811 rs1800307 GAA 2548 17 75700466 NM_000152 NP_000143 A/G G576S plus 3251861 1303 SEQUENOM CEPH CEPH (92) 92 1 100 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13812 rs1800309 GAA 2548 17 75701636 NM_000152 NP_000143 A/G E689K plus 3251852 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.27 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13813 rs1800309 GAA 2548 17 75701636 NM_000152 NP_000143 A/G E689K plus 3251852 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13814 rs1800309 GAA 2548 17 75701636 NM_000152 NP_000143 A/G E689K plus 24122682 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13815 rs1800309 GAA 2548 17 75701636 NM_000152 NP_000143 A/G E689K plus 24122682 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.03 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13816 rs1800309 GAA 2548 17 75701636 NM_000152 NP_000143 A/G E689K plus 24122682 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13817 rs1800314 GAA 2548 17 75706108 NM_000152 NP_000143 A/G V816I plus 3251846 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.13 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13818 rs1800314 GAA 2548 17 75706108 NM_000152 NP_000143 A/G V816I plus 3251846 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 13819 rs1800371 TP53 7157 17 7520273 NM_000546 NP_000537 C/T P47S minus 2420449 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 13820 rs1800371 TP53 7157 17 7520273 NM_000546 NP_000537 C/T P47S minus 23626414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 13821 rs1800371 TP53 7157 17 7520273 NM_000546 NP_000537 C/T P47S minus 23626414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 13822 rs1800371 TP53 7157 17 7520273 NM_000546 NP_000537 C/T P47S minus 23626414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,cluster" 17p13.1 tumor protein p53 (Li-Fraumeni syndrome) 13823 rs1800378 VWF 7450 12 6042463 NM_000552 NP_000543 A/G H484R minus 11037304 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 13824 rs1800378 VWF 7450 12 6042463 NM_000552 NP_000543 A/G H484R minus 24166845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 13825 rs1800378 VWF 7450 12 6042463 NM_000552 NP_000543 A/G H484R minus 24166845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 13826 rs1800378 VWF 7450 12 6042463 NM_000552 NP_000543 A/G H484R minus 24166845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13.3 von Willebrand factor 13827 rs1800385 VWF 7450 12 5998152 NM_000552 NP_000543 G/T V1565L minus 3172990 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.2 120 "by doubleHit,submitter,freq" 12p13.3 von Willebrand factor 13828 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.05 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13829 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.1 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13830 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 776 SNP500CANCER AFR1 African / African-American (24) 46 1 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13831 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 777 SNP500CANCER HISP1 Hispanic (23) 44 0.07 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13832 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13833 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 6903977 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13834 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 16359390 693 EGP_SNPS PDR90 NIHPDR 180 0.06 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13835 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 24473548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.05 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13836 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 24473548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13837 rs1800391 WRN 7486 8 31058246 NM_000553 NP_000544 A/G M387I plus 24473548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 13838 rs1800414 OCA2 4948 15 25870632 NM_000275 NP_000266 A/G H615R minus 3252396 738 YUSUKE JBIC-ALLELE Japanese (752) 888 0.45 123 "HapMap,freq,cluster" 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 13839 rs1800414 OCA2 4948 15 25870632 NM_000275 NP_000266 A/G H615R minus 3252396 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 13840 rs1800414 OCA2 4948 15 25870632 NM_000275 NP_000266 A/G H615R minus 24189239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 13841 rs1800414 OCA2 4948 15 25870632 NM_000275 NP_000266 A/G H615R minus 24189239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 13842 rs1800414 OCA2 4948 15 25870632 NM_000275 NP_000266 A/G H615R minus 24189239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,freq,cluster" 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 13843 rs1800430 HEXA 3073 15 70426057 NM_000520 NP_000511 A/G N399D minus 23512350 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q23-q24 hexosaminidase A (alpha polypeptide) 13844 rs1800430 HEXA 3073 15 70426057 NM_000520 NP_000511 A/G N399D minus 23512350 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 15q23-q24 hexosaminidase A (alpha polypeptide) 13845 rs1800430 HEXA 3073 15 70426057 NM_000520 NP_000511 A/G N399D minus 23512350 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q23-q24 hexosaminidase A (alpha polypeptide) 13846 rs1800431 HEXA 3073 15 70425946 NM_000520 NP_000511 A/G I436V minus 23512341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 15q23-q24 hexosaminidase A (alpha polypeptide) 13847 rs1800431 HEXA 3073 15 70425946 NM_000520 NP_000511 A/G I436V minus 23512341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q23-q24 hexosaminidase A (alpha polypeptide) 13848 rs1800431 HEXA 3073 15 70425946 NM_000520 NP_000511 A/G I436V minus 23512341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 15q23-q24 hexosaminidase A (alpha polypeptide) 13849 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 2667718 506 NCBI NIHPDR NIHPDR 86 0.05 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13850 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 5586228 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.07 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13851 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 5586228 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13852 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 5586228 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13853 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 5586228 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13854 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 5586228 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13855 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 9805739 693 EGP_SNPS PDR90 NIHPDR 168 0.05 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13856 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 24505610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13857 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 24505610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13858 rs1800435 ALAD 210 9 113233445 NM_000031 NP_000022 C/G K68N minus 24505610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q34 "aminolevulinate, delta-, dehydratase" 13859 rs1800437 GIPR 2696 19 50873232 NM_000164 NP_000155 C/G E354Q plus 4931821 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.23 121 "HapMap,doubleHit,freq,cluster" 19q13.3 gastric inhibitory polypeptide receptor 13860 rs1800437 GIPR 2696 19 50873232 NM_000164 NP_000155 C/G E354Q plus 4931821 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 121 "HapMap,doubleHit,freq,cluster" 19q13.3 gastric inhibitory polypeptide receptor 13861 rs1800437 GIPR 2696 19 50873232 NM_000164 NP_000155 C/G E354Q plus 17612434 1303 SEQUENOM CEPH CEPH (92) 92 0.06 121 "HapMap,doubleHit,freq,cluster" 19q13.3 gastric inhibitory polypeptide receptor 13862 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 5586407 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.12 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13863 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 5586407 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.19 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13864 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 5586407 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13865 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 5586407 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13866 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 5586407 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13867 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 12724399 693 EGP_SNPS PDR90 NIHPDR 170 0.09 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13868 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 24639447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13869 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 24639447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13870 rs1800440 CYP1B1 1545 2 38209790 NM_000104 NP_000095 A/G N453S minus 24639447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 13871 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13872 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13873 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13874 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13875 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13876 rs1800443 DRD4 1815 11 629830 NM_000797 NP_000788 G/T V194G plus 8819728 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 11p15.5 dopamine receptor D4 13877 rs1800450 MBL2 4153 10 54201241 NM_000242 NP_000233 A/G G54D minus 3344470 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 10q11.2-q21 "mannose-binding lectin (protein C) 2, soluble (opsonic defect)" 13878 rs1800450 MBL2 4153 10 54201241 NM_000242 NP_000233 A/G G54D minus 24109423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 10q11.2-q21 "mannose-binding lectin (protein C) 2, soluble (opsonic defect)" 13879 rs1800450 MBL2 4153 10 54201241 NM_000242 NP_000233 A/G G54D minus 24109423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by doubleHit,freq,cluster" 10q11.2-q21 "mannose-binding lectin (protein C) 2, soluble (opsonic defect)" 13880 rs1800450 MBL2 4153 10 54201241 NM_000242 NP_000233 A/G G54D minus 24109423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q11.2-q21 "mannose-binding lectin (protein C) 2, soluble (opsonic defect)" 13881 rs1800451 MBL2 4153 10 54201232 NM_000242 NP_000233 A/G G57E minus 24796407 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 10q11.2-q21 "mannose-binding lectin (protein C) 2, soluble (opsonic defect)" 13882 rs1800453 TAP1 6890 6 32922953 NM_000593 NP_000584 A/G D697G minus 23718241 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 13883 rs1800453 TAP1 6890 6 32922953 NM_000593 NP_000584 A/G D697G minus 23718241 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 13884 rs1800453 TAP1 6890 6 32922953 NM_000593 NP_000584 A/G D697G minus 23718241 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 13885 rs1800457 DIA1 1727 22 41348769 NM_007326 NP_015565 C/G T94S minus 12584079 693 EGP_SNPS PDR90 NIHPDR 176 0.08 123 "HapMap,submitter,freq,cluster" 22q13.2-q13.31 diaphorase (NADH) (cytochrome b-5 reductase) 13886 rs1800457 DIA1 1727 22 41348769 NM_007326 NP_015565 C/G T94S minus 12584079 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 22q13.2-q13.31 diaphorase (NADH) (cytochrome b-5 reductase) 13887 rs1800457 DIA1 1727 22 41348769 NM_007326 NP_015565 C/G T94S minus 23580309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 22q13.2-q13.31 diaphorase (NADH) (cytochrome b-5 reductase) 13888 rs1800457 DIA1 1727 22 41348769 NM_007326 NP_015565 C/G T94S minus 23580309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,submitter,freq,cluster" 22q13.2-q13.31 diaphorase (NADH) (cytochrome b-5 reductase) 13889 rs1800457 DIA1 1727 22 41348769 NM_007326 NP_015565 C/G T94S minus 23580309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "HapMap,submitter,freq,cluster" 22q13.2-q13.31 diaphorase (NADH) (cytochrome b-5 reductase) 13890 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 2420552 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13891 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 2420552 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.08 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13892 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 2420552 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13893 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 24686660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13894 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 24686660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13895 rs1800458 TTR 7276 18 27426863 NM_000371 NP_000362 A/G G26S plus 24686660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 13896 rs1800476 APOB 338 2 21161359 NM_000384 NP_000375 A/G V733I minus 2420571 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 2p24-p23 apolipoprotein B (including Ag(x) antigen) 13897 rs1800477 BCL2 596 18 59136753 NM_000633 NP_000624 A/G A43T minus 6904563 693 EGP_SNPS PDR90 NIHPDR 150 0.01 123 by freq 18q21.3 B-cell CLL/lymphoma 2 13898 rs1800477 BCL2 596 18 59136753 NM_000657 NP_000648 A/G A43T minus 6904563 693 EGP_SNPS PDR90 NIHPDR 150 0.01 123 by freq 18q21.3 B-cell CLL/lymphoma 2 13899 rs1800493 LRPAP1 4043 4 3553528 NM_002337 NP_002328 A/G V311M minus 24796206 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 4p16.3 low density lipoprotein receptor-related protein associated protein 1 13900 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 5586480 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13901 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 5586480 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13902 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 5586480 776 SNP500CANCER AFR1 African / African-American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13903 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 5586480 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13904 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 5586480 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13905 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 6312581 583 KIDDLAB PO000020C 184 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13906 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 6826700 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13907 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 24101885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13908 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 24101885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13909 rs1800497 ANKK1 255239 11 112776038 NM_178510 NP_848605 C/T E713K minus 24101885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 13910 rs1800520 AIRE 326 21 44534334 NM_000383 NP_000374 C/G S278R plus 2991110 1303 SEQUENOM CEPH CEPH (92) 92 0.19 96 "by doubleHit,cluster" 21q22.3 autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) 13911 rs1800549 ABCA4 24 1 94208074 NM_000350 NP_000341 C/T T1428M minus 3242218 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 13912 rs1800549 ABCA4 24 1 94208074 NM_000350 NP_000341 C/T T1428M minus 23840513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 13913 rs1800549 ABCA4 24 1 94208074 NM_000350 NP_000341 C/T T1428M minus 23840513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 13914 rs1800549 ABCA4 24 1 94208074 NM_000350 NP_000341 C/T T1428M minus 23840513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 13915 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13916 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13917 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13918 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13919 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13920 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13921 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13922 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13923 rs1800562 HFE 3077 6 26201120 NM_000410 NP_000401 A/G C282Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13924 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13925 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13926 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13927 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13928 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13929 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13930 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13931 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13932 rs1800562 HFE 3077 6 26201120 NM_139003 NP_620572 A/G C176Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13933 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13934 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13935 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13936 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13937 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13938 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13939 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13940 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13941 rs1800562 HFE 3077 6 26201120 NM_139004 NP_620573 A/G C190Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13942 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13943 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13944 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13945 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13946 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13947 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13948 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13949 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13950 rs1800562 HFE 3077 6 26201120 NM_139006 NP_620575 A/G C268Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13951 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13952 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13953 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13954 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13955 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13956 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13957 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13958 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13959 rs1800562 HFE 3077 6 26201120 NM_139007 NP_620576 A/G C194Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13960 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13961 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13962 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13963 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13964 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13965 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13966 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13967 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13968 rs1800562 HFE 3077 6 26201120 NM_139008 NP_620577 A/G C180Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13969 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13970 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13971 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13972 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13973 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13974 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13975 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13976 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13977 rs1800562 HFE 3077 6 26201120 NM_139009 NP_620578 A/G C259Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13978 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 123 "by cluster,freq" 6p21.3 hemochromatosis 13979 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 6p21.3 hemochromatosis 13980 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13981 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 6p21.3 hemochromatosis 13982 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13983 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 5586582 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by cluster,freq" 6p21.3 hemochromatosis 13984 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 24365242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 hemochromatosis 13985 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 24365242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13986 rs1800562 HFE 3077 6 26201120 NM_139010 NP_620579 A/G C102Y plus 24365242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 hemochromatosis 13987 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13988 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13989 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 776 SNP500CANCER AFR1 African / African-American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13990 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 777 SNP500CANCER HISP1 Hispanic (23) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13991 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13992 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 5586808 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13993 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 16725653 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13994 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 23984542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13995 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 23984542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13996 rs1800566 NQO1 1728 16 68302646 NM_000903 NP_000894 C/T P187S minus 23984542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 13997 rs1800748 TSC2 7249 16 2048756 NM_000548 NP_000539 A/G M286V plus 2420874 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 13998 rs1800748 TSC2 7249 16 2048756 NM_000548 NP_000539 A/G M286V plus 2420874 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 13999 rs1800748 TSC2 7249 16 2048756 NM_000548 NP_000539 A/G M286V plus 2420874 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.02 89 by freq 16p13.3 tuberous sclerosis 2 14000 rs1800748 TSC2 7249 16 2048756 NM_021055 NP_066399 A/G M286V plus 2420874 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 14001 rs1800748 TSC2 7249 16 2048756 NM_021055 NP_066399 A/G M286V plus 2420874 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 14002 rs1800748 TSC2 7249 16 2048756 NM_021055 NP_066399 A/G M286V plus 2420874 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.02 89 by freq 16p13.3 tuberous sclerosis 2 14003 rs1800748 TSC2 7249 16 2048756 NM_021056 NP_066400 A/G M286V plus 2420874 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 14004 rs1800748 TSC2 7249 16 2048756 NM_021056 NP_066400 A/G M286V plus 2420874 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 89 by freq 16p13.3 tuberous sclerosis 2 14005 rs1800748 TSC2 7249 16 2048756 NM_021056 NP_066400 A/G M286V plus 2420874 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.02 89 by freq 16p13.3 tuberous sclerosis 2 14006 rs1800762 DRD5 1816 4 9460911 NM_000798 NP_000789 A/C P330Q plus 24796208 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 4p16.1 dopamine receptor D5 14007 rs1800866 OPRS1 10280 9 34627690 NM_005866 NP_005857 A/C Q2P minus 24071954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.11 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14008 rs1800866 OPRS1 10280 9 34627690 NM_005866 NP_005857 A/C Q2P minus 24071954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14009 rs1800866 OPRS1 10280 9 34627690 NM_005866 NP_005857 A/C Q2P minus 24071954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14010 rs1800866 OPRS1 10280 9 34627690 NM_147157 NP_671513 A/C Q2P minus 24071954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.11 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14011 rs1800866 OPRS1 10280 9 34627690 NM_147157 NP_671513 A/C Q2P minus 24071954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14012 rs1800866 OPRS1 10280 9 34627690 NM_147157 NP_671513 A/C Q2P minus 24071954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14013 rs1800866 OPRS1 10280 9 34627690 NM_147158 NP_671514 A/C Q2P minus 24071954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.11 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14014 rs1800866 OPRS1 10280 9 34627690 NM_147158 NP_671514 A/C Q2P minus 24071954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14015 rs1800866 OPRS1 10280 9 34627690 NM_147158 NP_671514 A/C Q2P minus 24071954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14016 rs1800866 OPRS1 10280 9 34627690 NM_147159 NP_671515 A/C Q2P minus 24071954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.11 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14017 rs1800866 OPRS1 10280 9 34627690 NM_147159 NP_671515 A/C Q2P minus 24071954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14018 rs1800866 OPRS1 10280 9 34627690 NM_147159 NP_671515 A/C Q2P minus 24071954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14019 rs1800866 OPRS1 10280 9 34627690 NM_147160 NP_671516 A/C Q2P minus 24071954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.11 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14020 rs1800866 OPRS1 10280 9 34627690 NM_147160 NP_671516 A/C Q2P minus 24071954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14021 rs1800866 OPRS1 10280 9 34627690 NM_147160 NP_671516 A/C Q2P minus 24071954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by doubleHit,freq,cluster" 9p13.2 "opioid receptor, sigma 1" 14022 rs1800956 ENG 2022 9 127666175 NM_000118 NP_000109 C/G D366H minus 4925819 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.06 123 "HapMap,freq,cluster" 9q33-q34.1 endoglin (Osler-Rendu-Weber syndrome 1) 14023 rs1800956 ENG 2022 9 127666175 NM_000118 NP_000109 C/G D366H minus 4925819 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 9q33-q34.1 endoglin (Osler-Rendu-Weber syndrome 1) 14024 rs1800956 ENG 2022 9 127666175 NM_000118 NP_000109 C/G D366H minus 23893563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 9q33-q34.1 endoglin (Osler-Rendu-Weber syndrome 1) 14025 rs1800956 ENG 2022 9 127666175 NM_000118 NP_000109 C/G D366H minus 23893563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 9q33-q34.1 endoglin (Osler-Rendu-Weber syndrome 1) 14026 rs1800956 ENG 2022 9 127666175 NM_000118 NP_000109 C/G D366H minus 23893563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 9q33-q34.1 endoglin (Osler-Rendu-Weber syndrome 1) 14027 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 2421124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14028 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 2421124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14029 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 2421124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14030 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 2421124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14031 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 16360260 649 FHCRC POPU1 USA (20) 40 0.05 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14032 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 24603278 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14033 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 24603278 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14034 rs1800961 HNF4A 3172 20 42475778 NM_000457 NP_000448 C/T T139I plus 24603278 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14035 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 2421124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14036 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 2421124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14037 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 2421124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14038 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 2421124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14039 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 16360260 649 FHCRC POPU1 USA (20) 40 0.05 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14040 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 24603278 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14041 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 24603278 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14042 rs1800961 HNF4A 3172 20 42475778 NM_178849 NP_849180 C/T T139I plus 24603278 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14043 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 2421124 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14044 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 2421124 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14045 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 2421124 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14046 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 2421124 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.04 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14047 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 16360260 649 FHCRC POPU1 USA (20) 40 0.05 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14048 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 24603278 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14049 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 24603278 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14050 rs1800961 HNF4A 3172 20 42475778 NM_178850 NP_849181 C/T T139I plus 24603278 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 20q12-q13.1 "hepatocyte nuclear factor 4, alpha" 14051 rs1800973 LYZ 4069 12 68030281 NM_000239 NP_000230 A/C T88N plus 24796455 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 12q14.3 lysozyme (renal amyloidosis) 14052 rs1800974 ITGA7 3679 12 54375624 NM_002206 NP_002197 A/G R651H minus 3236448 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.06 123 "HapMap,doubleHit,freq,cluster" 12q13 "integrin, alpha 7" 14053 rs1800974 ITGA7 3679 12 54375624 NM_002206 NP_002197 A/G R651H minus 3236448 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 123 "HapMap,doubleHit,freq,cluster" 12q13 "integrin, alpha 7" 14054 rs1800974 ITGA7 3679 12 54375624 NM_002206 NP_002197 A/G R651H minus 24454183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 12q13 "integrin, alpha 7" 14055 rs1800974 ITGA7 3679 12 54375624 NM_002206 NP_002197 A/G R651H minus 24454183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 12q13 "integrin, alpha 7" 14056 rs1800974 ITGA7 3679 12 54375624 NM_002206 NP_002197 A/G R651H minus 24454183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 12q13 "integrin, alpha 7" 14057 rs1801019 UMPS 7372 3 125939432 NM_000373 NP_000364 C/G G213A plus 3177761 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.18 120 "by cluster,freq" 3q13 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase) 14058 rs1801019 UMPS 7372 3 125939432 NM_000373 NP_000364 C/G G213A plus 4958867 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.25 120 "by cluster,freq" 3q13 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase) 14059 rs1801019 UMPS 7372 3 125939432 NM_000373 NP_000364 C/G G213A plus 10068017 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by cluster,freq" 3q13 uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase) 14060 rs1801028 DRD2 1813 11 112788694 NM_000795 NP_000786 C/G S311C minus 5586476 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14061 rs1801028 DRD2 1813 11 112788694 NM_000795 NP_000786 C/G S311C minus 5586476 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14062 rs1801028 DRD2 1813 11 112788694 NM_000795 NP_000786 C/G S311C minus 5586476 776 SNP500CANCER AFR1 African / African-American (24) 46 1 113 "by cluster,freq" 11q23 dopamine receptor D2 14063 rs1801028 DRD2 1813 11 112788694 NM_000795 NP_000786 C/G S311C minus 5586476 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14064 rs1801028 DRD2 1813 11 112788694 NM_000795 NP_000786 C/G S311C minus 5586476 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 113 "by cluster,freq" 11q23 dopamine receptor D2 14065 rs1801028 DRD2 1813 11 112788694 NM_016574 NP_057658 C/G S282C minus 5586476 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14066 rs1801028 DRD2 1813 11 112788694 NM_016574 NP_057658 C/G S282C minus 5586476 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14067 rs1801028 DRD2 1813 11 112788694 NM_016574 NP_057658 C/G S282C minus 5586476 776 SNP500CANCER AFR1 African / African-American (24) 46 1 113 "by cluster,freq" 11q23 dopamine receptor D2 14068 rs1801028 DRD2 1813 11 112788694 NM_016574 NP_057658 C/G S282C minus 5586476 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "by cluster,freq" 11q23 dopamine receptor D2 14069 rs1801028 DRD2 1813 11 112788694 NM_016574 NP_057658 C/G S282C minus 5586476 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 113 "by cluster,freq" 11q23 dopamine receptor D2 14070 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14071 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14072 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14073 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14074 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14075 rs1801030 SULT1A1 6817 16 28524986 NM_001055 NP_001046 A/G V223M minus 12675646 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14076 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14077 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14078 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14079 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14080 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14081 rs1801030 SULT1A1 6817 16 28524986 NM_177529 NP_803565 A/G V223M minus 12675646 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14082 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14083 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14084 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14085 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14086 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14087 rs1801030 SULT1A1 6817 16 28524986 NM_177530 NP_803566 A/G V223M minus 12675646 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14088 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14089 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14090 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14091 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14092 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14093 rs1801030 SULT1A1 6817 16 28524986 NM_177534 NP_803878 A/G V223M minus 12675646 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14094 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14095 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14096 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14097 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14098 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14099 rs1801030 SULT1A1 6817 16 28524986 NM_177536 NP_803880 A/G V145M minus 12675646 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 14100 rs1801033 C6 729 5 41235716 NM_000065 NP_000056 A/C A119E minus 24188094 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 5p13 complement component 6 14101 rs1801033 C6 729 5 41235716 NM_000065 NP_000056 A/C A119E minus 24188094 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 5p13 complement component 6 14102 rs1801033 C6 729 5 41235716 NM_000065 NP_000056 A/C A119E minus 24188094 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 5p13 complement component 6 14103 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 2985379 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.49 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14104 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 2985379 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14105 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 17006282 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14106 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 23892666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14107 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 23892666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14108 rs1801058 GRK4 2868 4 3076155 NM_005307 NP_005298 C/T V454A plus 23892666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14109 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 2985379 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.49 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14110 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 2985379 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14111 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 17006282 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14112 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 23892666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14113 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 23892666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14114 rs1801058 GRK4 2868 4 3076155 NM_182982 NP_892027 C/T V486A plus 23892666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,submitter,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 14115 rs1801105 HNMT 3176 2 138593381 NM_006895 NP_008826 C/T T105I plus 16341329 1167 PHARMGKB_PPII PA128747820 180 0.09 123 "by cluster,freq" 2q22.1 histamine N-methyltransferase 14116 rs1801105 HNMT 3176 2 138593381 NM_006895 NP_008826 C/T T105I plus 24273695 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2q22.1 histamine N-methyltransferase 14117 rs1801105 HNMT 3176 2 138593381 NM_006895 NP_008826 C/T T105I plus 24273695 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q22.1 histamine N-methyltransferase 14118 rs1801105 HNMT 3176 2 138593381 NM_006895 NP_008826 C/T T105I plus 24273695 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 2q22.1 histamine N-methyltransferase 14119 rs1801114 CSF2RB 1439 22 35658304 NM_000395 NP_000386 A/G V652M plus 3172729 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.02 123 "by cluster,freq" 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14120 rs1801114 CSF2RB 1439 22 35658304 NM_000395 NP_000386 A/G V652M plus 3172729 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14121 rs1801114 CSF2RB 1439 22 35658304 NM_000395 NP_000386 A/G V652M plus 23646874 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14122 rs1801114 CSF2RB 1439 22 35658304 NM_000395 NP_000386 A/G V652M plus 23646874 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14123 rs1801114 CSF2RB 1439 22 35658304 NM_000395 NP_000386 A/G V652M plus 23646874 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14124 rs1801122 CSF2RB 1439 22 35658157 NM_000395 NP_000386 A/C P603T plus 24803546 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 14125 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 5586779 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.26 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14126 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 5586779 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.37 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14127 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 5586779 776 SNP500CANCER AFR1 African / African-American (24) 48 0.19 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14128 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 5586779 777 SNP500CANCER HISP1 Hispanic (23) 46 0.24 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14129 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 5586779 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.22 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14130 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 16341241 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.3 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14131 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 24238726 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14132 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 24238726 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14133 rs1801131 MTHFR 4524 1 11788742 NM_005957 NP_005948 A/C E429A minus 24238726 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14134 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 2978066 506 NCBI NIHPDR NIHPDR 74 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14135 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 3210929 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14136 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 5586780 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14137 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 5586780 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14138 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 5586780 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14139 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 5586780 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14140 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 5586780 778 SNP500CANCER PAC1 Pacific Rim (24) 44 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14141 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14142 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14143 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 902 AFFY Caucasian 24 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14144 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 903 AFFY Asian 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14145 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 904 AFFY CEPH 6 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14146 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 905 AFFY PDpanel 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14147 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 9880738 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14148 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 16341242 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14149 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 23844687 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14150 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 23844687 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14151 rs1801133 MTHFR 4524 1 11790644 NM_005957 NP_005948 C/T A222V minus 23844687 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 14152 rs1801158 DPYD 1806 1 97693442 NM_000110 NP_000101 A/G S534N minus 24796095 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 1p22 dihydropyrimidine dehydrogenase 14153 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 3247737 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.13 123 "by cluster,freq" 7q21.3 calcitonin receptor 14154 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.46 123 "by cluster,freq" 7q21.3 calcitonin receptor 14155 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.2 123 "by cluster,freq" 7q21.3 calcitonin receptor 14156 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "by cluster,freq" 7q21.3 calcitonin receptor 14157 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 777 SNP500CANCER HISP1 Hispanic (23) 46 0.35 123 "by cluster,freq" 7q21.3 calcitonin receptor 14158 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 123 "by cluster,freq" 7q21.3 calcitonin receptor 14159 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 7986214 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by cluster,freq" 7q21.3 calcitonin receptor 14160 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 23504544 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7q21.3 calcitonin receptor 14161 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 23504544 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 7q21.3 calcitonin receptor 14162 rs1801197 CALCR 799 7 92700404 NM_001742 NP_001733 C/T L447P minus 23504544 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by cluster,freq" 7q21.3 calcitonin receptor 14163 rs1801198 TCN2 6948 22 29336164 NM_000355 NP_000346 C/G R259P plus 3200415 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.45 123 "by doubleHit,freq,cluster" 22q12.2 transcobalamin II; macrocytic anemia 14164 rs1801198 TCN2 6948 22 29336164 NM_000355 NP_000346 C/G R259P plus 7995538 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 22q12.2 transcobalamin II; macrocytic anemia 14165 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 2857309 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.33 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14166 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 3205047 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14167 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 5608570 693 EGP_SNPS PDR90 NIHPDR 164 0.18 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14168 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 24577730 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14169 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 24577730 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14170 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 24577730 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14171 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 24803553 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14172 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 28458517 549 KYUGEN CP CEPH (78) 156 0.16 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14173 rs1801200 ERBB2 2064 17 35133114 NM_004448 NP_004439 A/G I655V plus 28458517 1335 KYUGEN JPK2 Japanese (100) 200 0.12 123 "HapMap,freq,cluster" 17q21.1 "v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)" 14174 rs1801204 ACADL 33 2 210893637 NM_001608 NP_001599 C/G S303T minus 24796174 1303 SEQUENOM CEPH CEPH (92) 184 0.29 123 by freq 2q34-q35 "acyl-Coenzyme A dehydrogenase, long chain" 14175 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 3177883 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.28 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14176 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 3177883 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.12 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14177 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 3177883 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.19 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14178 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 3177883 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14179 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 6458773 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14180 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 6458773 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14181 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 24395148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14182 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 24395148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14183 rs1801212 WFS1 7466 4 6420591 NM_006005 NP_005996 A/G V333I plus 24395148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,freq" 4p16 Wolfram syndrome 1 (wolframin) 14184 rs1801222 CUBN 8029 10 17196157 NM_001081 NP_001072 C/T F253S minus 2947966 1303 SEQUENOM CEPH CEPH (92) 92 0.46 121 "by doubleHit,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14185 rs1801222 CUBN 8029 10 17196157 NM_001081 NP_001072 C/T F253S minus 3172685 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 38 0.24 121 "by doubleHit,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14186 rs1801231 CUBN 8029 10 17064509 NM_001081 NP_001072 C/T P1559S minus 19889894 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14187 rs1801238 CUBN 8029 10 16972496 NM_001081 NP_001072 A/C L2879I minus 3176098 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.07 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14188 rs1801238 CUBN 8029 10 16972496 NM_001081 NP_001072 A/C L2879I minus 24540436 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14189 rs1801238 CUBN 8029 10 16972496 NM_001081 NP_001072 A/C L2879I minus 24540436 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14190 rs1801238 CUBN 8029 10 16972496 NM_001081 NP_001072 A/C L2879I minus 24540436 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14191 rs1801238 CUBN 8029 10 16972496 NM_001081 NP_001072 A/C L2879I minus 24796397 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14192 rs1801239 CUBN 8029 10 16959058 NM_001081 NP_001072 A/G I2984V minus 24540193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14193 rs1801239 CUBN 8029 10 16959058 NM_001081 NP_001072 A/G I2984V minus 24540193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14194 rs1801239 CUBN 8029 10 16959058 NM_001081 NP_001072 A/G I2984V minus 24540193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 14195 rs1801243 ATP7B 540 13 51446141 NM_000053 NP_000044 G/T S406A minus 4989590 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0.47 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14196 rs1801243 ATP7B 540 13 51446141 NM_000053 NP_000044 G/T S406A minus 13221772 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14197 rs1801243 ATP7B 540 13 51446141 NM_000053 NP_000044 G/T S406A minus 24448283 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14198 rs1801243 ATP7B 540 13 51446141 NM_000053 NP_000044 G/T S406A minus 24448283 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14199 rs1801243 ATP7B 540 13 51446141 NM_000053 NP_000044 G/T S406A minus 24448283 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14200 rs1801244 ATP7B 540 13 51442806 NM_000053 NP_000044 C/G V456L minus 16604408 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14201 rs1801244 ATP7B 540 13 51442806 NM_000053 NP_000044 C/G V456L minus 24448235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14202 rs1801244 ATP7B 540 13 51442806 NM_000053 NP_000044 C/G V456L minus 24448235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14203 rs1801244 ATP7B 540 13 51442806 NM_000053 NP_000044 C/G V456L minus 24448235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14204 rs1801249 ATP7B 540 13 51413355 NM_000053 NP_000044 C/T V1140A minus 3214313 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.42 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14205 rs1801249 ATP7B 540 13 51413355 NM_000053 NP_000044 C/T V1140A minus 24448066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14206 rs1801249 ATP7B 540 13 51413355 NM_000053 NP_000044 C/T V1140A minus 24448066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14207 rs1801249 ATP7B 540 13 51413355 NM_000053 NP_000044 C/T V1140A minus 24448066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 13q14.2-q21 "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)" 14208 rs1801251 KCNJ13 3769 2 233458965 NM_002242 NP_002233 C/T T175I minus 2421489 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,submitter,freq,cluster" 2q37 "potassium inwardly-rectifying channel, subfamily J, member 13" 14209 rs1801251 KCNJ13 3769 2 233458965 NM_002242 NP_002233 C/T T175I minus 23867910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 2q37 "potassium inwardly-rectifying channel, subfamily J, member 13" 14210 rs1801251 KCNJ13 3769 2 233458965 NM_002242 NP_002233 C/T T175I minus 23867910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.31 123 "HapMap,submitter,freq,cluster" 2q37 "potassium inwardly-rectifying channel, subfamily J, member 13" 14211 rs1801251 KCNJ13 3769 2 233458965 NM_002242 NP_002233 C/T T175I minus 23867910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.36 123 "HapMap,submitter,freq,cluster" 2q37 "potassium inwardly-rectifying channel, subfamily J, member 13" 14212 rs1801251 KCNJ13 3769 2 233458965 NM_002242 NP_002233 C/T T175I minus 24796184 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "HapMap,submitter,freq,cluster" 2q37 "potassium inwardly-rectifying channel, subfamily J, member 13" 14213 rs1801252 ADRB1 153 10 115794026 NM_000684 NP_000675 A/G S49G plus 4926155 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.14 123 "by doubleHit,freq,cluster" 10q24-q26 "adrenergic, beta-1-, receptor" 14214 rs1801252 ADRB1 153 10 115794026 NM_000684 NP_000675 A/G S49G plus 15884723 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 10q24-q26 "adrenergic, beta-1-, receptor" 14215 rs1801252 ADRB1 153 10 115794026 NM_000684 NP_000675 A/G S49G plus 20418323 1228 PHARMGKB_APP PA129963451 460 0.12 123 "by doubleHit,freq,cluster" 10q24-q26 "adrenergic, beta-1-, receptor" 14216 rs1801253 ADRB1 153 10 115795046 NM_000684 NP_000675 C/G G389R plus 20418322 1228 PHARMGKB_APP PA129963451 398 0.21 123 "by doubleHit,freq,cluster" 10q24-q26 "adrenergic, beta-1-, receptor" 14217 rs1801255 GPR56 9289 16 56247306 NM_005682 NP_005673 A/C Q306H plus 24435825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14218 rs1801255 GPR56 9289 16 56247306 NM_005682 NP_005673 A/C Q306H plus 24435825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14219 rs1801255 GPR56 9289 16 56247306 NM_005682 NP_005673 A/C Q306H plus 24435825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14220 rs1801255 GPR56 9289 16 56247306 NM_201524 NP_958932 A/C Q306H plus 24435825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14221 rs1801255 GPR56 9289 16 56247306 NM_201524 NP_958932 A/C Q306H plus 24435825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14222 rs1801255 GPR56 9289 16 56247306 NM_201524 NP_958932 A/C Q306H plus 24435825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14223 rs1801255 GPR56 9289 16 56247306 NM_201525 NP_958933 A/C Q306H plus 24435825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14224 rs1801255 GPR56 9289 16 56247306 NM_201525 NP_958933 A/C Q306H plus 24435825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14225 rs1801255 GPR56 9289 16 56247306 NM_201525 NP_958933 A/C Q306H plus 24435825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q13 G protein-coupled receptor 56 14226 rs1801257 GPR56 9289 16 56246886 NM_005682 NP_005673 C/G S281R plus 3252476 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.24 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14227 rs1801257 GPR56 9289 16 56246886 NM_005682 NP_005673 C/G S281R plus 19351661 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14228 rs1801257 GPR56 9289 16 56246886 NM_201524 NP_958932 C/G S281R plus 3252476 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.24 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14229 rs1801257 GPR56 9289 16 56246886 NM_201524 NP_958932 C/G S281R plus 19351661 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14230 rs1801257 GPR56 9289 16 56246886 NM_201525 NP_958933 C/G S281R plus 3252476 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.24 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14231 rs1801257 GPR56 9289 16 56246886 NM_201525 NP_958933 C/G S281R plus 19351661 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by doubleHit,freq,cluster" 16q13 G protein-coupled receptor 56 14232 rs1801262 NEUROD1 4760 2 182368961 NM_002500 NP_002491 A/G T45A minus 12586884 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 2q32 neurogenic differentiation 1 14233 rs1801262 NEUROD1 4760 2 182368961 NM_002500 NP_002491 A/G T45A minus 12586884 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,doubleHit,submitter,freq,cluster" 2q32 neurogenic differentiation 1 14234 rs1801262 NEUROD1 4760 2 182368961 NM_002500 NP_002491 A/G T45A minus 12587271 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.37 121 "HapMap,doubleHit,submitter,freq,cluster" 2q32 neurogenic differentiation 1 14235 rs1801265 DPYD 1806 1 98060906 NM_000110 NP_000101 C/T R29C minus 19100782 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,freq,cluster" 1p22 dihydropyrimidine dehydrogenase 14236 rs1801265 DPYD 1806 1 98060906 NM_000110 NP_000101 C/T R29C minus 23739939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 1p22 dihydropyrimidine dehydrogenase 14237 rs1801265 DPYD 1806 1 98060906 NM_000110 NP_000101 C/T R29C minus 23739939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1p22 dihydropyrimidine dehydrogenase 14238 rs1801265 DPYD 1806 1 98060906 NM_000110 NP_000101 C/T R29C minus 23739939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1p22 dihydropyrimidine dehydrogenase 14239 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 4388499 693 EGP_SNPS PDR90 NIHPDR 172 0.24 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14240 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 5586347 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.26 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14241 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 5586347 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14242 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 5586347 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14243 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 5586347 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14244 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 5586347 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14245 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 23991982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14246 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 23991982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14247 rs1801270 CDKN1A 1026 6 36759949 NM_000389 NP_000380 A/C S31R plus 23991982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14248 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 4388499 693 EGP_SNPS PDR90 NIHPDR 172 0.24 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14249 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 5586347 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.26 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14250 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 5586347 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14251 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 5586347 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14252 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 5586347 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14253 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 5586347 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14254 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 23991982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14255 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 23991982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14256 rs1801270 CDKN1A 1026 6 36759949 NM_078467 NP_510867 A/C S31R plus 23991982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 14257 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 2707025 1303 SEQUENOM CEPH CEPH (92) 92 0.47 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14258 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 5586537 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.44 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14259 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 5586537 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.47 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14260 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 5586537 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14261 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 5586537 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14262 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 5586537 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14263 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 23156764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14264 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 23156764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14265 rs1801274 FCGR2A 2212 1 158292800 NM_021642 NP_067674 C/T H165R minus 23156764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 14266 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 3172787 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.2 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14267 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 4250598 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.43 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14268 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 4250598 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.3 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14269 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 4250598 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14270 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 5586673 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.38 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14271 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 5586673 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.26 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14272 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 5586673 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14273 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 5586673 777 SNP500CANCER HISP1 Hispanic (23) 44 0.41 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14274 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 5586673 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14275 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 7986644 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1430 0.25 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14276 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 23444666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14277 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 23444666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14278 rs1801275 IL4R 3566 16 27281901 NM_000418 NP_000409 A/G Q576R plus 23444666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14279 rs1801276 IRS1 3667 2 227487426 NM_005544 NP_005535 C/G A512P minus 2421515 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 by freq 2q36 insulin receptor substrate 1 14280 rs1801276 IRS1 3667 2 227487426 NM_005544 NP_005535 C/G A512P minus 2421515 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 by freq 2q36 insulin receptor substrate 1 14281 rs1801276 IRS1 3667 2 227487426 NM_005544 NP_005535 C/G A512P minus 2421515 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 by freq 2q36 insulin receptor substrate 1 14282 rs1801276 IRS1 3667 2 227487426 NM_005544 NP_005535 C/G A512P minus 24796179 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 2q36 insulin receptor substrate 1 14283 rs1801276 IRS1 3667 2 227487426 NM_005544 NP_005535 C/G A512P minus 24803560 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 2q36 insulin receptor substrate 1 14284 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 4955706 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.03 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14285 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14286 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14287 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14288 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14289 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14290 rs1801278 IRS1 3667 2 227486049 NM_005544 NP_005535 A/G G971R minus 12675509 1303 SEQUENOM CEPH CEPH (92) 92 0.07 121 "by cluster,freq" 2q36 insulin receptor substrate 1 14291 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14292 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14293 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14294 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 777 SNP500CANCER HISP1 Hispanic (23) 46 0.06 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14295 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14296 rs1801279 NAT2 10 8 18301984 NM_000015 NP_000006 A/G R64Q plus 5586796 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14297 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 5586798 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.32 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14298 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 5586798 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.44 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14299 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 5586798 776 SNP500CANCER AFR1 African / African-American (24) 48 0.27 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14300 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 5586798 777 SNP500CANCER HISP1 Hispanic (23) 46 0.43 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14301 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 5586798 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.09 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14302 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 23737719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14303 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 23737719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14304 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 23737719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14305 rs1801280 NAT2 10 8 18302134 NM_000015 NP_000006 C/T I114T plus 24796683 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 "by cluster,freq" 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 14306 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14307 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 4 0.25 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14308 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 901 AFFY AfAm 12 1 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14309 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 902 AFFY Caucasian 22 0.09 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14310 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 903 AFFY Asian 10 0.1 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14311 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 904 AFFY CEPH 8 0.13 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14312 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 905 AFFY PDpanel 40 0.03 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14313 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 5587532 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14314 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 12587275 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.12 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14315 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 20420104 1235 PHARMGKB_PARC PA130216617 92 0.05 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14316 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 20420167 1235 PHARMGKB_PARC PA130216617 94 0.05 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14317 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 24301991 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14318 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 24301991 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14319 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 24301991 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14320 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 28447437 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14321 rs1801282 PPARG 5468 3 12368125 NM_015869 NP_056953 C/G P12A plus 28447437 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.07 123 "by cluster,freq" 3p25 "peroxisome proliferative activated receptor, gamma" 14322 rs1801311 NDUFA6 4700 22 40811223 NM_002490 NP_002481 C/T A9V minus 8298715 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 22q13.2-q13.31 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa" 14323 rs1801311 NDUFA6 4700 22 40811223 NM_002490 NP_002481 C/T A9V minus 8298715 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "HapMap,doubleHit,submitter,freq,cluster" 22q13.2-q13.31 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa" 14324 rs1801376 BUB1B 701 15 38265123 NM_001211 NP_001202 A/G R349Q plus 3234079 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 14325 rs1801376 BUB1B 701 15 38265123 NM_001211 NP_001202 A/G R349Q plus 12312147 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 14326 rs1801376 BUB1B 701 15 38265123 NM_001211 NP_001202 A/G R349Q plus 24035662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 14327 rs1801376 BUB1B 701 15 38265123 NM_001211 NP_001202 A/G R349Q plus 24035662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 14328 rs1801376 BUB1B 701 15 38265123 NM_001211 NP_001202 A/G R349Q plus 24035662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 15q15 BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) 14329 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 3228709 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.32 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14330 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 5586781 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.43 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14331 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 5586781 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.5 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14332 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 5586781 776 SNP500CANCER AFR1 African / African-American (24) 48 0.42 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14333 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 5586781 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14334 rs1801394 MTRR 4552 5 7923973 NM_002454 NP_002445 A/G I22M plus 5586781 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.31 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14335 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 3228709 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.32 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14336 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 5586781 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.43 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14337 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 5586781 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.5 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14338 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 5586781 776 SNP500CANCER AFR1 African / African-American (24) 48 0.42 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14339 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 5586781 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14340 rs1801394 MTRR 4552 5 7923973 NM_024010 NP_076915 A/G I49M plus 5586781 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.31 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 14341 rs1801421 RFP2 10206 13 49484270 NM_005798 NP_005789 A/G G65R plus 2421702 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 13q14 ret finger protein 2 14342 rs1801421 RFP2 10206 13 49484270 NM_052811 NP_434698 A/G G65R plus 2421702 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 13q14 ret finger protein 2 14343 rs1801421 RFP2 10206 13 49484270 NM_213590 NP_998755 A/G G65R plus 2421702 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 13q14 ret finger protein 2 14344 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14345 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14346 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14347 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14348 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14349 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 5586309 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14350 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 16356058 693 EGP_SNPS PDR90 NIHPDR 152 0.03 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14351 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 23736746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14352 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 23736746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14353 rs1801426 BRCA2 675 13 31870884 NM_000059 NP_000050 A/G I3412V plus 23736746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 14354 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 3230734 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14355 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 3230734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14356 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 3230734 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14357 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 23366772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14358 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 23366772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14359 rs1801449 CAPN3 825 15 40468491 NM_000070 NP_000061 A/G A236T plus 23366772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14360 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 3230734 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14361 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 3230734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14362 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 3230734 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14363 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 23366772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14364 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 23366772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14365 rs1801449 CAPN3 825 15 40468491 NM_024344 NP_077320 A/G A236T plus 23366772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14366 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 3230734 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14367 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 3230734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14368 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 3230734 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14369 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 23366772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14370 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 23366772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14371 rs1801449 CAPN3 825 15 40468491 NM_173087 NP_775110 A/G A236T plus 23366772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14372 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 3230734 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14373 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 3230734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14374 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 3230734 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14375 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 23366772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14376 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 23366772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14377 rs1801449 CAPN3 825 15 40468491 NM_212464 NP_997629 A/G A149T plus 23366772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14378 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 3230734 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14379 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 3230734 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14380 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 3230734 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14381 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 23366772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14382 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 23366772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14383 rs1801449 CAPN3 825 15 40468491 NM_212465 NP_997630 A/G A149T plus 23366772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q15.1-q21.1 "calpain 3, (p94)" 14384 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 4325110 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.07 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14385 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 4479917 506 NCBI NIHPDR NIHPDR 174 0.05 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14386 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 5586258 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.08 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14387 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 5586258 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.16 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14388 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 5586258 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14389 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 5586258 777 SNP500CANCER HISP1 Hispanic (23) 46 0.13 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14390 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 5586258 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14391 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 24551053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14392 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 24551053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14393 rs1801516 ATM 472 11 107680672 NM_000051 NP_000042 A/G D1853N plus 24551053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14394 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 4325110 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.07 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14395 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 4479917 506 NCBI NIHPDR NIHPDR 174 0.05 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14396 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 5586258 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.08 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14397 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 5586258 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.16 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14398 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 5586258 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14399 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 5586258 777 SNP500CANCER HISP1 Hispanic (23) 46 0.13 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14400 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 5586258 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14401 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 24551053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14402 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 24551053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14403 rs1801516 ATM 472 11 107680672 NM_138292 NP_612149 A/G D505N plus 24551053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14404 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 4325111 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14405 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 5586267 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14406 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 5586267 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14407 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 5586267 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14408 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 5586267 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14409 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 5586267 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14410 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 24551061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14411 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 24551061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14412 rs1801673 ATM 472 11 107680673 NM_000051 NP_000042 A/T D1853V plus 24551061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14413 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 4325111 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14414 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 5586267 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14415 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 5586267 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14416 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 5586267 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14417 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 5586267 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14418 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 5586267 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14419 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 24551061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14420 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 24551061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14421 rs1801673 ATM 472 11 107680673 NM_138292 NP_612149 A/T D505V plus 24551061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 14422 rs1801689 APOH 350 17 61641042 NM_000042 NP_000033 G/T C325G minus 24592474 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14423 rs1801689 APOH 350 17 61641042 NM_000042 NP_000033 G/T C325G minus 24592474 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14424 rs1801689 APOH 350 17 61641042 NM_000042 NP_000033 G/T C325G minus 24592474 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14425 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 9807051 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14426 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 24592426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14427 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 24592426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14428 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 24592426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14429 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 24796544 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14430 rs1801690 APOH 350 17 61638747 NM_000042 NP_000033 C/G W335S minus 24803567 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by cluster,freq" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 14431 rs1801699 APOB 338 2 21145651 NM_000384 NP_000375 A/G N1914S minus 2422073 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14432 rs1801699 APOB 338 2 21145651 NM_000384 NP_000375 A/G N1914S minus 20418851 889 PHARMGKB_PARC PA128275074 92 0.01 123 "HapMap,submitter,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14433 rs1801699 APOB 338 2 21145651 NM_000384 NP_000375 A/G N1914S minus 24242192 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14434 rs1801699 APOB 338 2 21145651 NM_000384 NP_000375 A/G N1914S minus 24242192 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14435 rs1801699 APOB 338 2 21145651 NM_000384 NP_000375 A/G N1914S minus 24242192 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14436 rs1801701 APOB 338 2 21140479 NM_000384 NP_000375 A/G R3638Q minus 20418895 889 PHARMGKB_PARC PA128275074 94 0.1 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14437 rs1801701 APOB 338 2 21140479 NM_000384 NP_000375 A/G R3638Q minus 24796145 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14438 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 6424043 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14439 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 12675273 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.07 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14440 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 12675273 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14441 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 12675273 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14442 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 12675273 777 SNP500CANCER HISP1 Hispanic (23) 44 0.18 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14443 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 12675273 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14444 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 20419018 889 PHARMGKB_PARC PA128275074 94 0.05 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14445 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 20419023 889 PHARMGKB_PARC PA128275074 94 0.05 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14446 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 23155894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14447 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 23155894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14448 rs1801702 APOB 338 2 21137137 NM_000384 NP_000375 C/G R4270T minus 23155894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 14449 rs1801710 EDNRB 1910 13 77390541 NM_000115 NP_000106 A/G G57S minus 24796467 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 13q22 endothelin receptor type B 14450 rs1801710 EDNRB 1910 13 77390541 NM_003991 NP_003982 A/G G57S minus 24796467 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 13q22 endothelin receptor type B 14451 rs1801714 ICAM1 3383 19 10256208 NM_000201 NP_000192 C/T P352L plus 3176193 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.03 113 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 14452 rs1801714 ICAM1 3383 19 10256208 NM_000201 NP_000192 C/T P352L plus 7985496 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.03 113 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 14453 rs1801714 ICAM1 3383 19 10256208 NM_000201 NP_000192 C/T P352L plus 7985496 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 19p13.3-p13.2 "intercellular adhesion molecule 1 (CD54), human rhinovirus receptor" 14454 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 5606251 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.11 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14455 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 5606251 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.15 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14456 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 5606251 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14457 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 5606251 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14458 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 5606251 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14459 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 24317505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14460 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 24317505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14461 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 24317505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14462 rs1801725 CASR 846 3 123486447 NM_000388 NP_000379 G/T A986S plus 24795982 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 "by cluster,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14463 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 4990985 738 YUSUKE JBIC-ALLELE Japanese (752) 1126 0.01 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14464 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 5606250 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.07 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14465 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 5606250 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.03 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14466 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 5606250 776 SNP500CANCER AFR1 African / African-American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14467 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 5606250 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14468 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 5606250 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14469 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 6441450 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14470 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 23264216 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14471 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 23264216 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14472 rs1801726 CASR 846 3 123486522 NM_000388 NP_000379 C/G E1011Q plus 23264216 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 14473 rs1801968 DYT1 1861 9 129660455 NM_000113 NP_000104 C/G D216H minus 3210308 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.05 106 "HapMap,submitter,freq,cluster" 9q34 "dystonia 1, torsion (autosomal dominant; torsin A)" 14474 rs1801968 DYT1 1861 9 129660455 NM_000113 NP_000104 C/G D216H minus 3210308 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 106 "HapMap,submitter,freq,cluster" 9q34 "dystonia 1, torsion (autosomal dominant; torsin A)" 14475 rs1801968 DYT1 1861 9 129660455 NM_000113 NP_000104 C/G D216H minus 3210308 1303 SEQUENOM CEPH CEPH (92) 92 0.27 106 "HapMap,submitter,freq,cluster" 9q34 "dystonia 1, torsion (autosomal dominant; torsin A)" 14476 rs1802002 CDIPT 10423 16 29778058 NM_006319 NP_006310 C/T R199C minus 24796504 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 16p12.1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 14477 rs1802069 CCT4 10575 2 62011055 NM_006430 NP_006421 G/T R435L minus 2422516 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2p15 "chaperonin containing TCP1, subunit 4 (delta)" 14478 rs1802073 SFRP4 6424 7 37720404 NM_003014 NP_003005 A/C P320T minus 3844710 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 7p14.1 secreted frizzled-related protein 4 14479 rs1802073 SFRP4 6424 7 37720404 NM_003014 NP_003005 A/C P320T minus 23395019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 7p14.1 secreted frizzled-related protein 4 14480 rs1802073 SFRP4 6424 7 37720404 NM_003014 NP_003005 A/C P320T minus 23395019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 7p14.1 secreted frizzled-related protein 4 14481 rs1802073 SFRP4 6424 7 37720404 NM_003014 NP_003005 A/C P320T minus 23395019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 7p14.1 secreted frizzled-related protein 4 14482 rs1802074 SFRP4 6424 7 37720343 NM_003014 NP_003005 A/G R340K minus 24796330 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 7p14.1 secreted frizzled-related protein 4 14483 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 7987627 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.21 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14484 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 7987627 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14485 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 7987627 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14486 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 15356082 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.21 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14487 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 15356082 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14488 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 15356082 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14489 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 23479888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14490 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 23479888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14491 rs1802323 LY86 9450 6 6599848 NM_004271 NP_004262 A/G M160V plus 23479888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 14492 rs1802376 SNX1 6642 15 62215612 NM_003099 NP_003090 A/G D466N plus 24796494 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 15q22.1 sorting nexin 1 14493 rs1802376 SNX1 6642 15 62215612 NM_148955 NP_683758 A/G D401N plus 24796494 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 15q22.1 sorting nexin 1 14494 rs1802376 SNX1 6642 15 62215612 NM_152826 NP_690039 A/G D418N plus 24796494 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 by freq 15q22.1 sorting nexin 1 14495 rs1802422 SERF2 10169 15 41873328 NM_005770 NP_005761 C/T L55F plus 24796488 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 15q15.1 small EDRK-rich factor 2 14496 rs1802492 FBLN5 10516 14 91413679 NM_006329 NP_006320 G/T D364Y minus 2423007 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 89 by freq 14q32.1 fibulin 5 14497 rs1802492 FBLN5 10516 14 91413679 NM_006329 NP_006320 G/T D364Y minus 2423007 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 89 by freq 14q32.1 fibulin 5 14498 rs1802492 FBLN5 10516 14 91413679 NM_006329 NP_006320 G/T D364Y minus 2423007 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.05 89 by freq 14q32.1 fibulin 5 14499 rs1802498 RFXANK 8625 19 19173496 NM_003721 NP_003712 C/G Q251E plus 3225844 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.2 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14500 rs1802498 RFXANK 8625 19 19173496 NM_003721 NP_003712 C/G Q251E plus 3225844 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14501 rs1802498 RFXANK 8625 19 19173496 NM_003721 NP_003712 C/G Q251E plus 3225844 1303 SEQUENOM CEPH CEPH (92) 92 1 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14502 rs1802498 RFXANK 8625 19 19173496 NM_134440 NP_604389 C/G Q228E plus 3225844 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.2 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14503 rs1802498 RFXANK 8625 19 19173496 NM_134440 NP_604389 C/G Q228E plus 3225844 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14504 rs1802498 RFXANK 8625 19 19173496 NM_134440 NP_604389 C/G Q228E plus 3225844 1303 SEQUENOM CEPH CEPH (92) 92 1 100 "HapMap,cluster" 19p12 regulatory factor X-associated ankyrin-containing protein 14505 rs1802521 NHP2L1 4809 22 40400816 NM_005008 NP_004999 A/C T19N minus 24803583 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 by freq 22q13.2-q13.31 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 14506 rs1802548 ID1 3397 20 29657038 NM_002165 NP_002156 A/G N63D plus 24803585 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 20q11 "inhibitor of DNA binding 1, dominant negative helix-loop-helix protein" 14507 rs1802548 ID1 3397 20 29657038 NM_181353 NP_851998 A/G N63D plus 24803585 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 20q11 "inhibitor of DNA binding 1, dominant negative helix-loop-helix protein" 14508 rs1802617 ZNF137 7696 19 57792397 NM_003438 NP_003429 G/T Q181H plus 3216665 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.24 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 137 (clone pHZ-30) 14509 rs1802617 ZNF137 7696 19 57792397 NM_003438 NP_003429 G/T Q181H plus 10928225 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 137 (clone pHZ-30) 14510 rs1802668 DLG1 1739 3 198409670 NM_004087 NP_004078 A/G K140R minus 24645157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 3q29 "discs, large homolog 1 (Drosophila)" 14511 rs1802668 DLG1 1739 3 198409670 NM_004087 NP_004078 A/G K140R minus 24645157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q29 "discs, large homolog 1 (Drosophila)" 14512 rs1802668 DLG1 1739 3 198409670 NM_004087 NP_004078 A/G K140R minus 24645157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q29 "discs, large homolog 1 (Drosophila)" 14513 rs1802668 DLG1 1739 3 198409670 NM_004087 NP_004078 A/G K140R minus 24796205 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 3q29 "discs, large homolog 1 (Drosophila)" 14514 rs1802787 FBLN1 2192 22 44265114 NM_001996 NP_001987 C/G C509S plus 24803589 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 by freq 22q13.31 fibulin 1 14515 rs1802787 FBLN1 2192 22 44265114 NM_006485 NP_006476 C/G C509S plus 24803589 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 by freq 22q13.31 fibulin 1 14516 rs1802787 FBLN1 2192 22 44265114 NM_006486 NP_006477 C/G C509S plus 24803589 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 by freq 22q13.31 fibulin 1 14517 rs1802787 FBLN1 2192 22 44265114 NM_006487 NP_006478 C/G C509S plus 24803589 1303 SEQUENOM CEPH CEPH (92) 184 0.03 123 by freq 22q13.31 fibulin 1 14518 rs1803065 ARPC2 10109 2 218928943 NM_005731 NP_005722 G/T D107Y plus 2423656 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2q36.1 "actin related protein 2/3 complex, subunit 2, 34kDa" 14519 rs1803065 ARPC2 10109 2 218928943 NM_152862 NP_690601 G/T D107Y plus 2423656 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2q36.1 "actin related protein 2/3 complex, subunit 2, 34kDa" 14520 rs1803092 TUBA2 7278 13 18646038 NM_006001 NP_005992 A/G V440M minus 4950175 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 108 "by cluster,freq" 13q11 "tubulin, alpha 2" 14521 rs1803092 TUBA2 7278 13 18646038 NM_079836 NP_524575 A/G V408M minus 4950175 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 108 "by cluster,freq" 13q11 "tubulin, alpha 2" 14522 rs1803155 AADAC 13 3 153028299 NM_001086 NP_001077 A/G V281I plus 3377328 1303 SEQUENOM CEPH CEPH (92) 92 0.27 121 "by doubleHit,freq,cluster" 3q21.3-q25.2 arylacetamide deacetylase (esterase) 14523 rs1803155 AADAC 13 3 153028299 NM_001086 NP_001077 A/G V281I plus 4918538 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.42 121 "by doubleHit,freq,cluster" 3q21.3-q25.2 arylacetamide deacetylase (esterase) 14524 rs1803183 EXOSC9 5393 4 123092747 NM_005033 NP_005024 A/G I282V plus 23305729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 14525 rs1803183 EXOSC9 5393 4 123092747 NM_005033 NP_005024 A/G I282V plus 23305729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 14526 rs1803183 EXOSC9 5393 4 123092747 NM_005033 NP_005024 A/G I282V plus 23305729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 4q27 "polymyositis/scleroderma autoantigen 1, 75kDa" 14527 rs1803250 CTSB 1508 8 11747583 NM_001908 NP_001899 A/G S53G minus 3177163 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.17 123 "by submitter,freq" 8p22 cathepsin B 14528 rs1803250 CTSB 1508 8 11747583 NM_001908 NP_001899 A/G S53G minus 24402427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 8p22 cathepsin B 14529 rs1803250 CTSB 1508 8 11747583 NM_001908 NP_001899 A/G S53G minus 24402427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq" 8p22 cathepsin B 14530 rs1803250 CTSB 1508 8 11747583 NM_001908 NP_001899 A/G S53G minus 24402427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 8p22 cathepsin B 14531 rs1803250 CTSB 1508 8 11747583 NM_001908 NP_001899 A/G S53G minus 24796360 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by submitter,freq" 8p22 cathepsin B 14532 rs1803250 CTSB 1508 8 11747583 NM_147780 NP_680090 A/G S53G minus 3177163 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.17 123 "by submitter,freq" 8p22 cathepsin B 14533 rs1803250 CTSB 1508 8 11747583 NM_147780 NP_680090 A/G S53G minus 24402427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 8p22 cathepsin B 14534 rs1803250 CTSB 1508 8 11747583 NM_147780 NP_680090 A/G S53G minus 24402427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq" 8p22 cathepsin B 14535 rs1803250 CTSB 1508 8 11747583 NM_147780 NP_680090 A/G S53G minus 24402427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 8p22 cathepsin B 14536 rs1803250 CTSB 1508 8 11747583 NM_147780 NP_680090 A/G S53G minus 24796360 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by submitter,freq" 8p22 cathepsin B 14537 rs1803250 CTSB 1508 8 11747583 NM_147781 NP_680091 A/G S53G minus 3177163 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.17 123 "by submitter,freq" 8p22 cathepsin B 14538 rs1803250 CTSB 1508 8 11747583 NM_147781 NP_680091 A/G S53G minus 24402427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 8p22 cathepsin B 14539 rs1803250 CTSB 1508 8 11747583 NM_147781 NP_680091 A/G S53G minus 24402427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq" 8p22 cathepsin B 14540 rs1803250 CTSB 1508 8 11747583 NM_147781 NP_680091 A/G S53G minus 24402427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 8p22 cathepsin B 14541 rs1803250 CTSB 1508 8 11747583 NM_147781 NP_680091 A/G S53G minus 24796360 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by submitter,freq" 8p22 cathepsin B 14542 rs1803250 CTSB 1508 8 11747583 NM_147782 NP_680092 A/G S53G minus 3177163 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.17 123 "by submitter,freq" 8p22 cathepsin B 14543 rs1803250 CTSB 1508 8 11747583 NM_147782 NP_680092 A/G S53G minus 24402427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 8p22 cathepsin B 14544 rs1803250 CTSB 1508 8 11747583 NM_147782 NP_680092 A/G S53G minus 24402427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq" 8p22 cathepsin B 14545 rs1803250 CTSB 1508 8 11747583 NM_147782 NP_680092 A/G S53G minus 24402427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 8p22 cathepsin B 14546 rs1803250 CTSB 1508 8 11747583 NM_147782 NP_680092 A/G S53G minus 24796360 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by submitter,freq" 8p22 cathepsin B 14547 rs1803250 CTSB 1508 8 11747583 NM_147783 NP_680093 A/G S53G minus 3177163 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.17 123 "by submitter,freq" 8p22 cathepsin B 14548 rs1803250 CTSB 1508 8 11747583 NM_147783 NP_680093 A/G S53G minus 24402427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 8p22 cathepsin B 14549 rs1803250 CTSB 1508 8 11747583 NM_147783 NP_680093 A/G S53G minus 24402427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq" 8p22 cathepsin B 14550 rs1803250 CTSB 1508 8 11747583 NM_147783 NP_680093 A/G S53G minus 24402427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 8p22 cathepsin B 14551 rs1803250 CTSB 1508 8 11747583 NM_147783 NP_680093 A/G S53G minus 24796360 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by submitter,freq" 8p22 cathepsin B 14552 rs1803274 BCHE 590 3 166973982 NM_000055 NP_000046 A/G A567T minus 24385183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 3q26.1-q26.2 butyrylcholinesterase 14553 rs1803274 BCHE 590 3 166973982 NM_000055 NP_000046 A/G A567T minus 24385183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 3q26.1-q26.2 butyrylcholinesterase 14554 rs1803274 BCHE 590 3 166973982 NM_000055 NP_000046 A/G A567T minus 24385183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3q26.1-q26.2 butyrylcholinesterase 14555 rs1803323 ATF4 468 22 38242823 NM_001675 NP_001666 C/G P258A plus 3176277 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.04 98 by freq 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14556 rs1803323 ATF4 468 22 38242823 NM_001675 NP_001666 C/G P258A plus 3176277 1303 SEQUENOM CEPH CEPH (92) 92 1 98 by freq 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14557 rs1803323 ATF4 468 22 38242823 NM_182810 NP_877962 C/G P258A plus 3176277 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.04 98 by freq 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14558 rs1803323 ATF4 468 22 38242823 NM_182810 NP_877962 C/G P258A plus 3176277 1303 SEQUENOM CEPH CEPH (92) 92 1 98 by freq 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14559 rs1803324 ATF4 468 22 38243017 NM_001675 NP_001666 C/G E322D plus 2423936 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14560 rs1803324 ATF4 468 22 38243017 NM_001675 NP_001666 C/G E322D plus 2423936 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14561 rs1803324 ATF4 468 22 38243017 NM_001675 NP_001666 C/G E322D plus 3172838 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 70 0.01 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14562 rs1803324 ATF4 468 22 38243017 NM_001675 NP_001666 C/G E322D plus 3172838 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14563 rs1803324 ATF4 468 22 38243017 NM_182810 NP_877962 C/G E322D plus 2423936 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14564 rs1803324 ATF4 468 22 38243017 NM_182810 NP_877962 C/G E322D plus 2423936 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14565 rs1803324 ATF4 468 22 38243017 NM_182810 NP_877962 C/G E322D plus 3172838 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 70 0.01 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14566 rs1803324 ATF4 468 22 38243017 NM_182810 NP_877962 C/G E322D plus 3172838 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 22q13.1 activating transcription factor 4 (tax-responsive enhancer element B67) 14567 rs1803361 CYP27A1 1593 2 219504622 NM_000784 NP_000775 C/T V400A plus 2423976 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 2q33-qter "cytochrome P450, family 27, subfamily A, polypeptide 1" 14568 rs1803415 PSMF1 9491 20 1047523 NM_006814 NP_006805 G/T F36C plus 2987135 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.44 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14569 rs1803415 PSMF1 9491 20 1047523 NM_006814 NP_006805 G/T F36C plus 8398089 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14570 rs1803415 PSMF1 9491 20 1047523 NM_006814 NP_006805 G/T F36C plus 24124854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14571 rs1803415 PSMF1 9491 20 1047523 NM_006814 NP_006805 G/T F36C plus 24124854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14572 rs1803415 PSMF1 9491 20 1047523 NM_006814 NP_006805 G/T F36C plus 24124854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14573 rs1803415 PSMF1 9491 20 1047523 NM_178578 NP_848693 G/T F36C plus 2987135 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.44 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14574 rs1803415 PSMF1 9491 20 1047523 NM_178578 NP_848693 G/T F36C plus 8398089 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14575 rs1803415 PSMF1 9491 20 1047523 NM_178578 NP_848693 G/T F36C plus 24124854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14576 rs1803415 PSMF1 9491 20 1047523 NM_178578 NP_848693 G/T F36C plus 24124854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14577 rs1803415 PSMF1 9491 20 1047523 NM_178578 NP_848693 G/T F36C plus 24124854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14578 rs1803415 PSMF1 9491 20 1047523 NM_178579 NP_848694 G/T F36C plus 2987135 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.44 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14579 rs1803415 PSMF1 9491 20 1047523 NM_178579 NP_848694 G/T F36C plus 8398089 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14580 rs1803415 PSMF1 9491 20 1047523 NM_178579 NP_848694 G/T F36C plus 24124854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14581 rs1803415 PSMF1 9491 20 1047523 NM_178579 NP_848694 G/T F36C plus 24124854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14582 rs1803415 PSMF1 9491 20 1047523 NM_178579 NP_848694 G/T F36C plus 24124854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 14583 rs1803791 WARS 7453 14 99873234 NM_004184 NP_004175 G/T G391V minus 2424473 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.11 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14584 rs1803791 WARS 7453 14 99873234 NM_004184 NP_004175 G/T G391V minus 4416346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14585 rs1803791 WARS 7453 14 99873234 NM_004184 NP_004175 G/T G391V minus 4416346 1303 SEQUENOM CEPH CEPH (92) 92 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14586 rs1803791 WARS 7453 14 99873234 NM_173701 NP_776049 G/T G391V minus 2424473 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.11 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14587 rs1803791 WARS 7453 14 99873234 NM_173701 NP_776049 G/T G391V minus 4416346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14588 rs1803791 WARS 7453 14 99873234 NM_173701 NP_776049 G/T G391V minus 4416346 1303 SEQUENOM CEPH CEPH (92) 92 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14589 rs1803791 WARS 7453 14 99873234 NM_213645 NP_998810 G/T G350V minus 2424473 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.11 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14590 rs1803791 WARS 7453 14 99873234 NM_213645 NP_998810 G/T G350V minus 4416346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14591 rs1803791 WARS 7453 14 99873234 NM_213645 NP_998810 G/T G350V minus 4416346 1303 SEQUENOM CEPH CEPH (92) 92 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14592 rs1803791 WARS 7453 14 99873234 NM_213646 NP_998811 G/T G350V minus 2424473 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.11 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14593 rs1803791 WARS 7453 14 99873234 NM_213646 NP_998811 G/T G350V minus 4416346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14594 rs1803791 WARS 7453 14 99873234 NM_213646 NP_998811 G/T G350V minus 4416346 1303 SEQUENOM CEPH CEPH (92) 92 1 111 HapMap 14q32.31 tryptophanyl-tRNA synthetase 14595 rs1803843 CDKN3 1033 14 53954343 NM_005192 NP_005183 C/T S159F plus 24796473 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 by freq 14q22 cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase) 14596 rs1803846 TRIP12 9320 2 230458891 XM_376178 XP_376178 C/T Q1910X minus 2424543 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 89 HapMap 2q37.1 thyroid hormone receptor interactor 12 14597 rs1804020 ZFML 27332 2 71565830 NM_014497 NP_055312 A/G V1726M plus 21655471 1303 SEQUENOM CEPH CEPH (92) 92 0.22 121 "by doubleHit,freq" 2p13.2-p13.1 NP220 nuclear protein 14598 rs1804027 SP110 3431 2 230867781 NM_004509 NP_004500 C/T M523T minus 3035124 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14599 rs1804027 SP110 3431 2 230867781 NM_004509 NP_004500 C/T M523T minus 3197494 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.18 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14600 rs1804027 SP110 3431 2 230867781 NM_004509 NP_004500 C/T M523T minus 24328377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14601 rs1804027 SP110 3431 2 230867781 NM_004509 NP_004500 C/T M523T minus 24328377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14602 rs1804027 SP110 3431 2 230867781 NM_004509 NP_004500 C/T M523T minus 24328377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14603 rs1804027 SP110 3431 2 230867781 NM_004510 NP_004501 C/T M523T minus 3035124 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14604 rs1804027 SP110 3431 2 230867781 NM_004510 NP_004501 C/T M523T minus 3197494 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.18 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14605 rs1804027 SP110 3431 2 230867781 NM_004510 NP_004501 C/T M523T minus 24328377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14606 rs1804027 SP110 3431 2 230867781 NM_004510 NP_004501 C/T M523T minus 24328377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14607 rs1804027 SP110 3431 2 230867781 NM_004510 NP_004501 C/T M523T minus 24328377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14608 rs1804027 SP110 3431 2 230867781 NM_080424 NP_536349 C/T M523T minus 3035124 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14609 rs1804027 SP110 3431 2 230867781 NM_080424 NP_536349 C/T M523T minus 3197494 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.18 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14610 rs1804027 SP110 3431 2 230867781 NM_080424 NP_536349 C/T M523T minus 24328377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14611 rs1804027 SP110 3431 2 230867781 NM_080424 NP_536349 C/T M523T minus 24328377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14612 rs1804027 SP110 3431 2 230867781 NM_080424 NP_536349 C/T M523T minus 24328377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 2q37.1 SP110 nuclear body protein 14613 rs1804062 AKR1C3 8644 10 5128623 NM_003739 NP_003730 G/T E36X plus 24796396 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 14614 rs1804118 TTR 7276 18 27432605 NM_000371 NP_000362 A/C T138N plus 2424851 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.23 123 by freq 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 14615 rs1804118 TTR 7276 18 27432605 NM_000371 NP_000362 A/C T138N plus 2424851 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.22 123 by freq 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 14616 rs1804118 TTR 7276 18 27432605 NM_000371 NP_000362 A/C T138N plus 2424851 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 by freq 18q12.1 "transthyretin (prealbumin, amyloidosis type I)" 14617 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 2424894 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14618 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 2424894 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14619 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 2424894 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14620 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 4390695 1303 SEQUENOM CEPH CEPH (92) 92 1 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14621 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 24451455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14622 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 24451455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14623 rs1804160 PCK1 5105 20 55572771 NM_002591 NP_002582 A/G V368I plus 24451455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 14624 rs1804499 GTF2B 2959 1 89065034 NM_001514 NP_001505 C/T P19S minus 2425272 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 1p22-p21 general transcription factor IIB 14625 rs1804515 TMSB10 9168 2 85044819 NM_021103 NP_066926 G/T M7R plus 24803613 1303 SEQUENOM CEPH CEPH (92) 184 0.2 123 by freq 2p11.2 "thymosin, beta 10" 14626 rs1804600 SEPHS2 22928 16 30363745 NM_012248 NP_036380 C/G P269A minus 23448480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p12.1 selenophosphate synthetase 2 14627 rs1804600 SEPHS2 22928 16 30363745 NM_012248 NP_036380 C/G P269A minus 23448480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 16p12.1 selenophosphate synthetase 2 14628 rs1804600 SEPHS2 22928 16 30363745 NM_012248 NP_036380 C/G P269A minus 23448480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p12.1 selenophosphate synthetase 2 14629 rs1804604 CREM 1390 10 35535856 NM_181571 NP_853549 A/G Q209R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14630 rs1804604 CREM 1390 10 35535856 NM_182717 NP_874386 A/G Q30R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14631 rs1804604 CREM 1390 10 35535856 NM_182718 NP_874387 A/G Q18R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14632 rs1804604 CREM 1390 10 35535856 NM_182719 NP_874388 A/G Q30R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14633 rs1804604 CREM 1390 10 35535856 NM_182720 NP_874389 A/G Q18R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14634 rs1804604 CREM 1390 10 35535856 NM_182721 NP_874390 A/G Q22R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14635 rs1804604 CREM 1390 10 35535856 NM_182722 NP_874391 A/G Q5R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14636 rs1804604 CREM 1390 10 35535856 NM_182723 NP_874392 A/G Q12R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14637 rs1804604 CREM 1390 10 35535856 NM_182724 NP_874393 A/G Q22R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14638 rs1804604 CREM 1390 10 35535856 NM_182725 NP_874394 A/G Q5R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14639 rs1804604 CREM 1390 10 35535856 NM_182769 NP_877570 A/G Q154R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14640 rs1804604 CREM 1390 10 35535856 NM_182770 NP_877571 A/G Q91R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14641 rs1804604 CREM 1390 10 35535856 NM_182771 NP_877572 A/G Q179R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14642 rs1804604 CREM 1390 10 35535856 NM_182772 NP_877573 A/G Q116R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14643 rs1804604 CREM 1390 10 35535856 NM_182850 NP_878270 A/G Q5R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14644 rs1804604 CREM 1390 10 35535856 NM_182853 NP_878273 A/G Q5R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14645 rs1804604 CREM 1390 10 35535856 NM_183011 NP_898829 A/G Q209R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14646 rs1804604 CREM 1390 10 35535856 NM_183012 NP_898830 A/G Q146R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14647 rs1804604 CREM 1390 10 35535856 NM_183013 NP_898831 A/G Q158R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14648 rs1804604 CREM 1390 10 35535856 NM_183060 NP_898883 A/G Q130R plus 24796399 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 10p11.21 cAMP responsive element modulator 14649 rs1804645 NCOA1 8648 2 24886609 NM_003743 NP_003734 C/T P1272S plus 24796146 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 2p23 nuclear receptor coactivator 1 14650 rs1804645 NCOA1 8648 2 24886609 NM_147223 NP_671756 C/T P1272S plus 24796146 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 2p23 nuclear receptor coactivator 1 14651 rs1804645 NCOA1 8648 2 24886609 NM_147233 NP_671766 C/T P1272S plus 24796146 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 2p23 nuclear receptor coactivator 1 14652 rs1804785 ACO2 50 22 40249076 NM_001098 NP_001089 G/T A768S plus 24803614 1303 SEQUENOM CEPH CEPH (92) 184 0.02 123 by freq 22q13.2-q13.31 "aconitase 2, mitochondrial" 14653 rs1804941 STAMBP 10617 2 73986355 NM_006463 NP_006454 G/T V188L plus 2425786 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2p13.1 STAM binding protein 14654 rs1804941 STAMBP 10617 2 73986355 NM_201647 NP_964010 G/T V188L plus 2425786 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2p13.1 STAM binding protein 14655 rs1804941 STAMBP 10617 2 73986355 NM_213622 NP_998787 G/T V188L plus 2425786 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 89 HapMap 2p13.1 STAM binding protein 14656 rs1805002 CCKBR 887 11 6247696 NM_176875 NP_795344 A/G V125I plus 12586737 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,submitter,freq,cluster" 11p15.4 cholecystokinin B receptor 14657 rs1805002 CCKBR 887 11 6247696 NM_176875 NP_795344 A/G V125I plus 24513918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 11p15.4 cholecystokinin B receptor 14658 rs1805002 CCKBR 887 11 6247696 NM_176875 NP_795344 A/G V125I plus 24513918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 11p15.4 cholecystokinin B receptor 14659 rs1805002 CCKBR 887 11 6247696 NM_176875 NP_795344 A/G V125I plus 24513918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 11p15.4 cholecystokinin B receptor 14660 rs1805005 MC1R 4157 16 88513345 NM_002386 NP_002377 G/T V60L plus 3173165 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.03 106 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14661 rs1805005 MC1R 4157 16 88513345 NM_002386 NP_002377 G/T V60L plus 4472754 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 106 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14662 rs1805007 MC1R 4157 16 88513618 NM_002386 NP_002377 C/T R151C plus 4472756 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 123 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14663 rs1805007 MC1R 4157 16 88513618 NM_002386 NP_002377 C/T R151C plus 24695277 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14664 rs1805007 MC1R 4157 16 88513618 NM_002386 NP_002377 C/T R151C plus 24695277 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14665 rs1805007 MC1R 4157 16 88513618 NM_002386 NP_002377 C/T R151C plus 24695277 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14666 rs1805008 MC1R 4157 16 88513645 NM_002386 NP_002377 C/T R160W plus 4472758 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 110 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 14667 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 4250592 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.48 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14668 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 4250592 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.13 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14669 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 5586670 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.23 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14670 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 5586670 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14671 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 5586670 776 SNP500CANCER AFR1 African / African-American (24) 48 0.46 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14672 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 5586670 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14673 rs1805011 IL4R 3566 16 27281373 NM_000418 NP_000409 A/C E400A plus 5586670 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.13 119 "by doubleHit,freq,cluster" 16p11.2-12.1 interleukin 4 receptor 14674 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 4250594 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.09 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14675 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 4250594 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.13 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14676 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 4250594 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14677 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 5586671 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.1 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14678 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 5586671 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14679 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 5586671 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14680 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 5586671 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14681 rs1805012 IL4R 3566 16 27281465 NM_000418 NP_000409 C/T C431R plus 5586671 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.11 116 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14682 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 4250627 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14683 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 5586672 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14684 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 5586672 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14685 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 5586672 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14686 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 5586672 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14687 rs1805013 IL4R 3566 16 27281481 NM_000418 NP_000409 C/T S436L plus 5586672 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14688 rs1805014 IL4R 3566 16 27282530 NM_000418 NP_000409 C/T S786P plus 5586675 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 113 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14689 rs1805014 IL4R 3566 16 27282530 NM_000418 NP_000409 C/T S786P plus 5586675 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14690 rs1805014 IL4R 3566 16 27282530 NM_000418 NP_000409 C/T S786P plus 5586675 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14691 rs1805014 IL4R 3566 16 27282530 NM_000418 NP_000409 C/T S786P plus 5586675 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14692 rs1805014 IL4R 3566 16 27282530 NM_000418 NP_000409 C/T S786P plus 5586675 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14693 rs1805015 IL4R 3566 16 27281681 NM_000418 NP_000409 C/T S503P plus 3176232 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.02 102 by freq 16p11.2-12.1 interleukin 4 receptor 14694 rs1805015 IL4R 3566 16 27281681 NM_000418 NP_000409 C/T S503P plus 4250597 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.31 102 by freq 16p11.2-12.1 interleukin 4 receptor 14695 rs1805015 IL4R 3566 16 27281681 NM_000418 NP_000409 C/T S503P plus 4250597 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.2 102 by freq 16p11.2-12.1 interleukin 4 receptor 14696 rs1805015 IL4R 3566 16 27281681 NM_000418 NP_000409 C/T S503P plus 4250597 1303 SEQUENOM CEPH CEPH (92) 92 0.26 102 by freq 16p11.2-12.1 interleukin 4 receptor 14697 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 4250601 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.19 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14698 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 4250601 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14699 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 5586674 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.12 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14700 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 5586674 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14701 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 5586674 776 SNP500CANCER AFR1 African / African-American (24) 48 0.27 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14702 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 5586674 777 SNP500CANCER HISP1 Hispanic (23) 44 0.09 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14703 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 5586674 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14704 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 23444700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14705 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 23444700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14706 rs1805016 IL4R 3566 16 27282428 NM_000418 NP_000409 G/T S752A plus 23444700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 14707 rs1805017 PLA2G7 7941 6 46792181 NM_005084 NP_005075 A/G R92H minus 24622434 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14708 rs1805017 PLA2G7 7941 6 46792181 NM_005084 NP_005075 A/G R92H minus 24622434 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by submitter,freq" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14709 rs1805017 PLA2G7 7941 6 46792181 NM_005084 NP_005075 A/G R92H minus 24622434 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by submitter,freq" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14710 rs1805017 PLA2G7 7941 6 46792181 NM_005084 NP_005075 A/G R92H minus 24796315 1303 SEQUENOM CEPH CEPH (92) 184 0.35 123 "by submitter,freq" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14711 rs1805018 PLA2G7 7941 6 46787262 NM_005084 NP_005075 C/T I198T minus 3228354 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.19 123 "by doubleHit,submitter,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14712 rs1805018 PLA2G7 7941 6 46787262 NM_005084 NP_005075 C/T I198T minus 22377263 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,submitter,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14713 rs1805018 PLA2G7 7941 6 46787262 NM_005084 NP_005075 C/T I198T minus 23675804 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14714 rs1805018 PLA2G7 7941 6 46787262 NM_005084 NP_005075 C/T I198T minus 23675804 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14715 rs1805018 PLA2G7 7941 6 46787262 NM_005084 NP_005075 C/T I198T minus 23675804 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 6p21.2-p12 "phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)" 14716 rs1805034 TNFRSF11A 8792 18 58178221 NM_003839 NP_003830 C/T A192V plus 12439382 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 "tumor necrosis factor receptor superfamily, member 11a, activator of NFKB" 14717 rs1805034 TNFRSF11A 8792 18 58178221 NM_003839 NP_003830 C/T A192V plus 23488962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 "tumor necrosis factor receptor superfamily, member 11a, activator of NFKB" 14718 rs1805034 TNFRSF11A 8792 18 58178221 NM_003839 NP_003830 C/T A192V plus 23488962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 "tumor necrosis factor receptor superfamily, member 11a, activator of NFKB" 14719 rs1805034 TNFRSF11A 8792 18 58178221 NM_003839 NP_003830 C/T A192V plus 23488962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 "tumor necrosis factor receptor superfamily, member 11a, activator of NFKB" 14720 rs1805040 CYP4F3 4051 19 15621881 NM_000896 NP_000887 A/C A269D plus 4950597 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.17 119 "by cluster,freq" 19p13.2 "cytochrome P450, family 4, subfamily F, polypeptide 3" 14721 rs1805048 USH2A 7399 1 212851057 NM_007123 NP_009054 A/T D644V minus 24796139 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14722 rs1805048 USH2A 7399 1 212851057 NM_206933 NP_996816 A/T D644V minus 24796139 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14723 rs1805049 USH2A 7399 1 212737159 NM_007123 NP_009054 A/G R1486K minus 23202558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14724 rs1805049 USH2A 7399 1 212737159 NM_007123 NP_009054 A/G R1486K minus 23202558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14725 rs1805049 USH2A 7399 1 212737159 NM_007123 NP_009054 A/G R1486K minus 23202558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14726 rs1805049 USH2A 7399 1 212737159 NM_206933 NP_996816 A/G R1486K minus 23202558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14727 rs1805049 USH2A 7399 1 212737159 NM_206933 NP_996816 A/G R1486K minus 23202558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14728 rs1805049 USH2A 7399 1 212737159 NM_206933 NP_996816 A/G R1486K minus 23202558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 14729 rs1805055 HTR2A 3356 13 46367969 NM_000621 NP_000612 A/C T25N minus 24432449 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq" 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 14730 rs1805055 HTR2A 3356 13 46367969 NM_000621 NP_000612 A/C T25N minus 24432449 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 14731 rs1805055 HTR2A 3356 13 46367969 NM_000621 NP_000612 A/C T25N minus 24432449 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 14732 rs1805055 HTR2A 3356 13 46367969 NM_000621 NP_000612 A/C T25N minus 24796462 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 "by submitter,freq" 13q14-q21 5-hydroxytryptamine (serotonin) receptor 2A 14733 rs1805066 SLC6A2 6530 16 54276644 NM_001043 NP_001034 A/G V245I plus 24796509 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 14734 rs1805070 WFS1 7466 4 6421752 NM_006005 NP_005996 A/G I720V plus 4919189 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.09 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 14735 rs1805070 WFS1 7466 4 6421752 NM_006005 NP_005996 A/G I720V plus 23962146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 14736 rs1805070 WFS1 7466 4 6421752 NM_006005 NP_005996 A/G I720V plus 23962146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 14737 rs1805070 WFS1 7466 4 6421752 NM_006005 NP_005996 A/G I720V plus 23962146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 14738 rs1805074 DMGDH 29958 5 78360108 NM_013391 NP_037523 C/T S646P minus 23392777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 14739 rs1805074 DMGDH 29958 5 78360108 NM_013391 NP_037523 C/T S646P minus 23392777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 14740 rs1805074 DMGDH 29958 5 78360108 NM_013391 NP_037523 C/T S646P minus 23392777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by submitter,freq,cluster" 5q14.1 dimethylglycine dehydrogenase 14741 rs1805075 IGF2R 3482 6 160475618 NM_000876 NP_000867 A/G N2020S plus 12585941 693 EGP_SNPS PDR90 NIHPDR 180 0.14 123 by freq 6q26 insulin-like growth factor 2 receptor 14742 rs1805075 IGF2R 3482 6 160475618 NM_000876 NP_000867 A/G N2020S plus 24053426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6q26 insulin-like growth factor 2 receptor 14743 rs1805075 IGF2R 3482 6 160475618 NM_000876 NP_000867 A/G N2020S plus 24053426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6q26 insulin-like growth factor 2 receptor 14744 rs1805075 IGF2R 3482 6 160475618 NM_000876 NP_000867 A/G N2020S plus 24053426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 6q26 insulin-like growth factor 2 receptor 14745 rs1805081 NPC1 4864 18 19394430 NM_000271 NP_000262 A/G H215R minus 5180738 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 108 "HapMap,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14746 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14747 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 901 AFFY AfAm 8 0.38 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14748 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 902 AFFY Caucasian 20 0.4 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14749 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 903 AFFY Asian 12 0.25 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14750 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 904 AFFY CEPH 12 0.42 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14751 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 2425997 905 AFFY PDpanel 40 0.25 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14752 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 24710396 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14753 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 24710396 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14754 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 24710396 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14755 rs1805082 NPC1 4864 18 19374442 NM_000271 NP_000262 A/G I858V minus 24796554 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "HapMap,submitter,freq" 18q11-q12 "Niemann-Pick disease, type C1" 14756 rs1805084 NPC1 4864 18 19366204 NM_000271 NP_000262 A/G R1266Q minus 12423208 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,submitter,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14757 rs1805084 NPC1 4864 18 19366204 NM_000271 NP_000262 A/G R1266Q minus 12423208 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,submitter,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14758 rs1805084 NPC1 4864 18 19366204 NM_000271 NP_000262 A/G R1266Q minus 23800268 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14759 rs1805084 NPC1 4864 18 19366204 NM_000271 NP_000262 A/G R1266Q minus 23800268 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,submitter,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14760 rs1805084 NPC1 4864 18 19366204 NM_000271 NP_000262 A/G R1266Q minus 23800268 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 18q11-q12 "Niemann-Pick disease, type C1" 14761 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 2426000 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14762 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 2426000 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14763 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 2426000 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14764 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 23237107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14765 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 23237107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14766 rs1805085 GDF8 2660 2 190752666 NM_005259 NP_005250 A/G A55T minus 23237107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14767 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 638 TSC-CSHL TSC_42_AA TSC African American (42) 83 0.42 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14768 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.05 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14769 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14770 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 901 AFFY AfAm 8 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14771 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 902 AFFY Caucasian 22 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14772 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 903 AFFY Asian 12 0.08 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14773 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 904 AFFY CEPH 12 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14774 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 2426001 905 AFFY PDpanel 44 0.02 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14775 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 23237026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14776 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 23237026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14777 rs1805086 GDF8 2660 2 190750583 NM_005259 NP_005250 A/G K153R minus 23237026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 2q32.2 growth differentiation factor 8 14778 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14779 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14780 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14781 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14782 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 901 AFFY AfAm 12 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14783 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 902 AFFY Caucasian 22 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14784 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 903 AFFY Asian 10 1 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14785 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 904 AFFY CEPH 6 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14786 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 2961149 905 AFFY PDpanel 44 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14787 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 3211692 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14788 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 14457700 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14789 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 24276502 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14790 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 24276502 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14791 rs1805087 MTR 4548 1 233374541 NM_000254 NP_000245 A/G D919G plus 24276502 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 1q43 5-methyltetrahydrofolate-homocysteine methyltransferase 14792 rs1805097 IRS2 8660 13 109233232 NM_003749 NP_003740 A/G G1057D minus 12266409 1303 SEQUENOM CEPH CEPH (92) 92 0.21 119 "by doubleHit,freq,cluster" 13q34 insulin receptor substrate 2 14793 rs1805107 CDX2 1045 13 27435317 NM_001265 NP_001256 C/T P293S minus 12587362 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.18 121 "by doubleHit,freq,cluster" 13q12.3 caudal type homeo box transcription factor 2 14794 rs1805123 KCNH2 3757 7 150083182 NM_000238 NP_000229 A/C K897T minus 20399353 1197 PHARMGKB_PAT PA129994864 640 0.1 123 "by cluster,freq" 7q35-q36 "potassium voltage-gated channel, subfamily H (eag-related), member 2" 14795 rs1805123 KCNH2 3757 7 150083182 NM_172057 NP_742054 A/C K557T minus 20399353 1197 PHARMGKB_PAT PA129994864 640 0.1 123 "by cluster,freq" 7q35-q36 "potassium voltage-gated channel, subfamily H (eag-related), member 2" 14796 rs1805124 SCN5A 6331 3 38620424 NM_000335 NP_000326 A/G H558R minus 20399369 1208 PHARMGKB_PAT PA130023842 638 0.2 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14797 rs1805124 SCN5A 6331 3 38620424 NM_000335 NP_000326 A/G H558R minus 23686030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.1 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14798 rs1805124 SCN5A 6331 3 38620424 NM_000335 NP_000326 A/G H558R minus 23686030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14799 rs1805124 SCN5A 6331 3 38620424 NM_000335 NP_000326 A/G H558R minus 23686030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14800 rs1805124 SCN5A 6331 3 38620424 NM_198056 NP_932173 A/G H558R minus 20399369 1208 PHARMGKB_PAT PA130023842 638 0.2 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14801 rs1805124 SCN5A 6331 3 38620424 NM_198056 NP_932173 A/G H558R minus 23686030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.1 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14802 rs1805124 SCN5A 6331 3 38620424 NM_198056 NP_932173 A/G H558R minus 23686030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14803 rs1805124 SCN5A 6331 3 38620424 NM_198056 NP_932173 A/G H558R minus 23686030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 "by doubleHit,freq,cluster" 3p21 "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)" 14804 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 3175977 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.47 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14805 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 6651383 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14806 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 24120156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14807 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 24120156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14808 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 24120156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14809 rs1805127 KCNE1 3753 21 34743691 NM_000219 NP_000210 A/G S38G minus 28461933 1344 PHARMGKB_PAT PA130599254 Asian 754 0.35 123 "by doubleHit,freq,cluster" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14810 rs1805128 KCNE1 3753 21 34743550 NM_000219 NP_000210 A/G D85N minus 28461934 1344 PHARMGKB_PAT PA130599254 Asian 754 0.01 123 by freq 21q22.12 "potassium voltage-gated channel, Isk-related family, member 1" 14811 rs1805152 CLCNKA 1187 1 16101807 NM_004070 NP_004061 A/G A447T plus 24796059 1303 SEQUENOM CEPH CEPH (92) 184 0.35 123 "by doubleHit,freq,cluster" 1p36 chloride channel Ka 14812 rs1805318 PMS2 5395 7 5799848 NM_000535 NP_000526 A/T T597S minus 2667723 506 NCBI NIHPDR NIHPDR 84 0.02 101 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14813 rs1805318 PMS2 5395 7 5799848 NM_000535 NP_000526 A/T T597S minus 2667723 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 101 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14814 rs1805318 PMS2 5395 7 5799848 NM_000535 NP_000526 A/T T597S minus 2667723 1303 SEQUENOM CEPH CEPH (92) 92 1 101 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14815 rs1805321 PMS2 5395 7 5800229 NM_000535 NP_000526 C/T P470S minus 2667726 506 NCBI NIHPDR NIHPDR 92 0.36 120 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14816 rs1805321 PMS2 5395 7 5800229 NM_000535 NP_000526 C/T P470S minus 3172641 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.09 120 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14817 rs1805321 PMS2 5395 7 5800229 NM_000535 NP_000526 C/T P470S minus 5259684 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.33 120 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14818 rs1805321 PMS2 5395 7 5800229 NM_000535 NP_000526 C/T P470S minus 5259684 1303 SEQUENOM CEPH CEPH (92) 92 0.41 120 "HapMap,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14819 rs1805323 PMS2 5395 7 5800183 NM_000535 NP_000526 A/C T485K minus 2667729 506 NCBI NIHPDR NIHPDR 92 0.05 101 "by cluster,freq" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14820 rs1805324 PMS2 5395 7 5799771 NM_000535 NP_000526 A/G M622I minus 2667730 506 NCBI NIHPDR NIHPDR 72 0.03 101 "by cluster,freq" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14821 rs1805324 PMS2 5395 7 5799771 NM_000535 NP_000526 A/G M622I minus 2667730 1303 SEQUENOM CEPH CEPH (92) 92 1 101 "by cluster,freq" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 14822 rs1805327 RAD1 5810 5 34944634 NM_002853 NP_002844 A/G E281G minus 2981553 555 UUGC NIH90 NIHPDR 180 0.04 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14823 rs1805327 RAD1 5810 5 34944634 NM_002853 NP_002844 A/G E281G minus 3256840 506 NCBI NIHPDR NIHPDR 858 0.05 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14824 rs1805327 RAD1 5810 5 34944634 NM_133282 NP_579816 A/G E172G minus 2981553 555 UUGC NIH90 NIHPDR 180 0.04 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14825 rs1805327 RAD1 5810 5 34944634 NM_133282 NP_579816 A/G E172G minus 3256840 506 NCBI NIHPDR NIHPDR 858 0.05 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14826 rs1805327 RAD1 5810 5 34944634 NM_133377 NP_596868 A/G E281G minus 2981553 555 UUGC NIH90 NIHPDR 180 0.04 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14827 rs1805327 RAD1 5810 5 34944634 NM_133377 NP_596868 A/G E281G minus 3256840 506 NCBI NIHPDR NIHPDR 858 0.05 100 "by submitter,freq,cluster" 5p13.2 RAD1 homolog (S. pombe) 14828 rs1805328 RAD1 5810 5 34947671 NM_002853 NP_002844 C/G T104S minus 2981547 555 UUGC NIH90 NIHPDR 166 0.01 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14829 rs1805328 RAD1 5810 5 34947671 NM_002853 NP_002844 C/G T104S minus 3256839 506 NCBI NIHPDR NIHPDR 814 0.01 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14830 rs1805328 RAD1 5810 5 34947671 NM_002853 NP_002844 C/G T104S minus 24425027 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14831 rs1805328 RAD1 5810 5 34947671 NM_002853 NP_002844 C/G T104S minus 24425027 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14832 rs1805328 RAD1 5810 5 34947671 NM_002853 NP_002844 C/G T104S minus 24425027 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14833 rs1805328 RAD1 5810 5 34947671 NM_133377 NP_596868 C/G T104S minus 2981547 555 UUGC NIH90 NIHPDR 166 0.01 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14834 rs1805328 RAD1 5810 5 34947671 NM_133377 NP_596868 C/G T104S minus 3256839 506 NCBI NIHPDR NIHPDR 814 0.01 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14835 rs1805328 RAD1 5810 5 34947671 NM_133377 NP_596868 C/G T104S minus 24425027 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14836 rs1805328 RAD1 5810 5 34947671 NM_133377 NP_596868 C/G T104S minus 24425027 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14837 rs1805328 RAD1 5810 5 34947671 NM_133377 NP_596868 C/G T104S minus 24425027 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5p13.2 RAD1 homolog (S. pombe) 14838 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 2667735 506 NCBI NIHPDR NIHPDR 86 0.19 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14839 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 3172617 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.13 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14840 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.18 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14841 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.21 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14842 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14843 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14844 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14845 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 5586896 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14846 rs1805329 RAD23B 5887 9 107163883 NM_002874 NP_002865 C/T A249V plus 16358632 693 EGP_SNPS PDR90 NIHPDR 176 0.2 120 "HapMap,submitter,freq,cluster" 9q31.2 RAD23 homolog B (S. cerevisiae) 14847 rs1805362 MRE11A 4361 11 93792974 NM_005590 NP_005581 A/G M670V minus 2667777 506 NCBI NIHPDR NIHPDR 88 0.01 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14848 rs1805362 MRE11A 4361 11 93792974 NM_005590 NP_005581 A/G M670V minus 23133680 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14849 rs1805362 MRE11A 4361 11 93792974 NM_005590 NP_005581 A/G M670V minus 23659379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14850 rs1805362 MRE11A 4361 11 93792974 NM_005590 NP_005581 A/G M670V minus 23659379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14851 rs1805362 MRE11A 4361 11 93792974 NM_005590 NP_005581 A/G M670V minus 23659379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14852 rs1805362 MRE11A 4361 11 93792974 NM_005591 NP_005582 A/G M698V minus 2667777 506 NCBI NIHPDR NIHPDR 88 0.01 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14853 rs1805362 MRE11A 4361 11 93792974 NM_005591 NP_005582 A/G M698V minus 23133680 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14854 rs1805362 MRE11A 4361 11 93792974 NM_005591 NP_005582 A/G M698V minus 23659379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14855 rs1805362 MRE11A 4361 11 93792974 NM_005591 NP_005582 A/G M698V minus 23659379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14856 rs1805362 MRE11A 4361 11 93792974 NM_005591 NP_005582 A/G M698V minus 23659379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14857 rs1805367 MRE11A 4361 11 93832319 NM_005590 NP_005581 A/G D468G minus 2667782 506 NCBI NIHPDR NIHPDR 88 0.01 121 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14858 rs1805367 MRE11A 4361 11 93832319 NM_005590 NP_005581 A/G D468G minus 23133576 693 EGP_SNPS PDR90 NIHPDR 180 0.01 121 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14859 rs1805367 MRE11A 4361 11 93832319 NM_005591 NP_005582 A/G D468G minus 2667782 506 NCBI NIHPDR NIHPDR 88 0.01 121 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14860 rs1805367 MRE11A 4361 11 93832319 NM_005591 NP_005582 A/G D468G minus 23133576 693 EGP_SNPS PDR90 NIHPDR 180 0.01 121 "by cluster,freq" 11q21 MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 14861 rs1805373 OGG1 4968 3 9771508 NM_002542 NP_002533 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14862 rs1805373 OGG1 4968 3 9771508 NM_002542 NP_002533 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14863 rs1805373 OGG1 4968 3 9771508 NM_016819 NP_058212 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14864 rs1805373 OGG1 4968 3 9771508 NM_016819 NP_058212 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14865 rs1805373 OGG1 4968 3 9771508 NM_016820 NP_058213 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14866 rs1805373 OGG1 4968 3 9771508 NM_016820 NP_058213 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14867 rs1805373 OGG1 4968 3 9771508 NM_016821 NP_058214 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14868 rs1805373 OGG1 4968 3 9771508 NM_016821 NP_058214 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14869 rs1805373 OGG1 4968 3 9771508 NM_016826 NP_058434 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14870 rs1805373 OGG1 4968 3 9771508 NM_016826 NP_058434 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14871 rs1805373 OGG1 4968 3 9771508 NM_016828 NP_058437 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14872 rs1805373 OGG1 4968 3 9771508 NM_016828 NP_058437 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14873 rs1805373 OGG1 4968 3 9771508 NM_016829 NP_058438 A/G R229Q plus 2667790 506 NCBI NIHPDR NIHPDR 840 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14874 rs1805373 OGG1 4968 3 9771508 NM_016829 NP_058438 A/G R229Q plus 4480372 693 EGP_SNPS PDR90 NIHPDR 156 0.03 106 "by cluster,freq" 3p26.2 8-oxoguanine DNA glycosylase 14875 rs1805378 NTHL1 4913 16 2034654 NM_002528 NP_002519 C/T I176T minus 2667796 506 NCBI NIHPDR NIHPDR 84 0.01 102 "by cluster,freq" 16p13.3 nth endonuclease III-like 1 (E. coli) 14876 rs1805378 NTHL1 4913 16 2034654 NM_002528 NP_002519 C/T I176T minus 3180953 1303 SEQUENOM CEPH CEPH (92) 92 1 102 "by cluster,freq" 16p13.3 nth endonuclease III-like 1 (E. coli) 14877 rs1805378 NTHL1 4913 16 2034654 NM_002528 NP_002519 C/T I176T minus 4319034 506 NCBI NIHPDR NIHPDR 612 0 102 "by cluster,freq" 16p13.3 nth endonuclease III-like 1 (E. coli) 14878 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 2667830 506 NCBI NIHPDR NIHPDR 76 0.14 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14879 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 4329056 693 EGP_SNPS PDR90 NIHPDR 160 0.19 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14880 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 6903846 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14881 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 6903846 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14882 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 6903846 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14883 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 6903846 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14884 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 6903846 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14885 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 24545419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14886 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 24545419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14887 rs1805388 LIG4 3981 13 107661592 NM_002312 NP_002303 C/T T9I minus 24545419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14888 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 2667830 506 NCBI NIHPDR NIHPDR 76 0.14 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14889 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 4329056 693 EGP_SNPS PDR90 NIHPDR 160 0.19 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14890 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 6903846 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14891 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 6903846 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14892 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 6903846 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14893 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 6903846 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14894 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 6903846 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.24 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14895 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 24545419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14896 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 24545419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14897 rs1805388 LIG4 3981 13 107661592 NM_206937 NP_996820 C/T T9I minus 24545419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14898 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 2667831 506 NCBI NIHPDR NIHPDR 76 0.03 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14899 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 4329055 693 EGP_SNPS PDR90 NIHPDR 160 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14900 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 6903850 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14901 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 6903850 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14902 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 6903850 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14903 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 6903850 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14904 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 6903850 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14905 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 24085013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14906 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 24085013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14907 rs1805389 LIG4 3981 13 107661610 NM_002312 NP_002303 C/T A3V minus 24085013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14908 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 2667831 506 NCBI NIHPDR NIHPDR 76 0.03 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14909 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 4329055 693 EGP_SNPS PDR90 NIHPDR 160 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14910 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 6903850 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14911 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 6903850 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14912 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 6903850 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14913 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 6903850 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14914 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 6903850 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14915 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 24085013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14916 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 24085013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14917 rs1805389 LIG4 3981 13 107661610 NM_206937 NP_996820 C/T A3V minus 24085013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 14918 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 2667854 506 NCBI NIHPDR NIHPDR 96 0.01 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14919 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 4480415 693 EGP_SNPS PDR90 NIHPDR 180 0.01 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14920 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 4480415 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14921 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 5586197 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14922 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 5586197 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14923 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 5586197 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14924 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 5586197 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14925 rs1805409 ADPRT 142 1 222884901 NM_001618 NP_001609 A/G A188T minus 5586197 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 14926 rs1805749 KLRG1 10219 12 9036158 NM_005810 NP_005801 A/G W58R minus 2668237 1303 SEQUENOM CEPH CEPH (92) 92 0.37 92 by freq 12p12-p13 "killer cell lectin-like receptor subfamily G, member 1" 14927 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 870115 506 NCBI NIHPDR NIHPDR 174 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14928 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 3207747 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14929 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 5586804 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14930 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 5586804 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14931 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 5586804 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14932 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 5586804 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14933 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 5586804 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14934 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 22970225 693 EGP_SNPS PDR90 NIHPDR 156 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14935 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 22970225 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14936 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 22970225 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14937 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 24042204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14938 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 24042204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14939 rs1805794 NBS1 4683 8 91059655 NM_002485 NP_002476 C/G E185Q plus 24042204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 8q21 Nijmegen breakage syndrome 1 (nibrin) 14940 rs1806931 OR10H2 26538 19 15700365 NM_013939 NP_039227 A/G S171F minus 2669758 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.01 100 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 2" 14941 rs1806931 OR10H2 26538 19 15700365 NM_013939 NP_039227 A/G S171F minus 2669758 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 100 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 2" 14942 rs1806931 OR10H2 26538 19 15700365 NM_013939 NP_039227 A/G S171F minus 2669758 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.39 100 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 2" 14943 rs1806931 OR10H2 26538 19 15700365 NM_013939 NP_039227 A/G S171F minus 2669758 1303 SEQUENOM CEPH CEPH (92) 92 1 100 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 2" 14944 rs1806931 OR10H2 26538 19 15700365 NM_013939 NP_039227 A/G S171F minus 3226250 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.39 100 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 2" 14945 rs1809008 ZDHHC11 79844 5 878280 NM_024786 NP_079062 C/T R341Q plus 2673022 771 TSC-CSHL SC_12_A CORIELL Asian (12) 20 0.25 116 "by doubleHit,freq,cluster" 5p15.33 "zinc finger, DHHC domain containing 11" 14946 rs1809008 ZDHHC11 79844 5 878280 NM_024786 NP_079062 C/T R341Q plus 2673022 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.36 116 "by doubleHit,freq,cluster" 5p15.33 "zinc finger, DHHC domain containing 11" 14947 rs1809008 ZDHHC11 79844 5 878280 NM_024786 NP_079062 C/T R341Q plus 2673022 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.29 116 "by doubleHit,freq,cluster" 5p15.33 "zinc finger, DHHC domain containing 11" 14948 rs1809279 NPEPPS 9520 17 43018748 NM_006310 NP_006301 C/T G278D minus 2673386 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 17q21 aminopeptidase puromycin sensitive 14949 rs1811237 PCDHB7 56129 5 140534665 NM_018940 NP_061763 A/C V689L minus 2675851 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 14950 rs1812240 CGI-96 27341 22 41236604 NM_015703 NP_056518 C/T V85I plus 8290480 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 22q13.2-q13.31 CGI-96 protein 14951 rs1812240 CGI-96 27341 22 41236604 NM_015703 NP_056518 C/T V85I plus 24087679 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 "by doubleHit,freq,cluster" 22q13.2-q13.31 CGI-96 protein 14952 rs1812240 CGI-96 27341 22 41236604 NM_015703 NP_056518 C/T V85I plus 24087679 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 22q13.2-q13.31 CGI-96 protein 14953 rs1812240 CGI-96 27341 22 41236604 NM_015703 NP_056518 C/T V85I plus 24087679 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.16 123 "by doubleHit,freq,cluster" 22q13.2-q13.31 CGI-96 protein 14954 rs1813160 MPHOSPH10 10199 2 71272280 NM_005791 NP_005782 A/C E229D minus 2678238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 116 "HapMap,doubleHit,freq,cluster" 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 14955 rs1815811 PDZK2 79849 11 118564614 NM_024791 NP_079067 A/G R358Q plus 5574788 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 11q23.3 PDZ domain containing 2 14956 rs1815811 PDZK2 79849 11 118564614 NM_024791 NP_079067 A/G R358Q plus 24569183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 11q23.3 PDZ domain containing 2 14957 rs1815811 PDZK2 79849 11 118564614 NM_024791 NP_079067 A/G R358Q plus 24569183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 11q23.3 PDZ domain containing 2 14958 rs1815811 PDZK2 79849 11 118564614 NM_024791 NP_079067 A/G R358Q plus 24569183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 11q23.3 PDZ domain containing 2 14959 rs1815930 MYO5B 4645 18 45817297 XM_371116 XP_371116 A/G T613A minus 2681728 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 18q21 myosin VB 14960 rs1817206 OR51A2 401667 11 4933344 XM_377159 XP_377159 C/T G59E plus 2683262 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.15 103 "HapMap,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 14961 rs1817206 OR51A2 401667 11 4933344 XM_377159 XP_377159 C/T G59E plus 2683262 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 83 0.05 103 "HapMap,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 14962 rs1817206 OR51A2 401667 11 4933344 XM_377159 XP_377159 C/T G59E plus 2683262 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 103 "HapMap,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 14963 rs1817206 OR51A2 401667 11 4933344 XM_377159 XP_377159 C/T G59E plus 2683262 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 103 "HapMap,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 14964 rs1820128 ZNF600 162966 19 57962196 NM_198457 NP_940859 A/G C209R plus 5274133 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 121 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 600 14965 rs1820965 TAF1B 9014 2 10010368 NM_005680 NP_005671 A/C E462D minus 19457023 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 14966 rs1820965 TAF1B 9014 2 10010368 NM_005680 NP_005671 A/C E462D minus 24162698 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 14967 rs1820965 TAF1B 9014 2 10010368 NM_005680 NP_005671 A/C E462D minus 24162698 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,submitter,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 14968 rs1820965 TAF1B 9014 2 10010368 NM_005680 NP_005671 A/C E462D minus 24162698 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 14969 rs1822135 ADPRTL1 143 13 23906630 NM_006437 NP_006428 A/G L1550P plus 2689070 1303 SEQUENOM CEPH CEPH (92) 92 0.05 121 "by doubleHit,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 14970 rs1824152 CPAMD8 27151 19 16949299 NM_015692 NP_056507 A/G H546R minus 2691443 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 120 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 14971 rs1824152 CPAMD8 27151 19 16949299 NM_015692 NP_056507 A/G H546R minus 2691443 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 14972 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14973 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 901 AFFY AfAm 12 0.17 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14974 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 902 AFFY Caucasian 20 0.15 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14975 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 903 AFFY Asian 8 1 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14976 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 904 AFFY CEPH 6 0.17 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14977 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 2693982 905 AFFY PDpanel 46 0.2 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14978 rs1826330 HSPCAL3 3324 11 27868454 XM_084514 XP_084514 C/T T261A plus 4999149 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1298 0.32 120 "HapMap,doubleHit,freq,cluster" 11p14.2-p14.1 "heat shock 90kDa protein 1, alpha-like 3" 14979 rs1831370 OR1N2 138882 9 122395111 XM_071151 XP_071151 C/T W37R plus 24655556 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 14980 rs1831370 OR1N2 138882 9 122395111 XM_071151 XP_071151 C/T W37R plus 24655556 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 14981 rs1831370 OR1N2 138882 9 122395111 XM_071151 XP_071151 C/T W37R plus 24655556 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily N, member 2" 14982 rs1833785 SIGLEC10 89790 19 56609947 NM_033130 NP_149121 G/T R520S plus 23766897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "by doubleHit,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 10 14983 rs1833785 SIGLEC10 89790 19 56609947 NM_033130 NP_149121 G/T R520S plus 23766897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 10 14984 rs1833785 SIGLEC10 89790 19 56609947 NM_033130 NP_149121 G/T R520S plus 23766897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.18 123 "by doubleHit,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 10 14985 rs1834026 OR1F1 4992 16 3194471 NM_012360 NP_036492 A/G F75S minus 2703142 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.27 121 "by doubleHit,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 1" 14986 rs1834026 OR1F1 4992 16 3194471 NM_012360 NP_036492 A/G F75S minus 2703142 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 27 0.5 121 "by doubleHit,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 1" 14987 rs1834026 OR1F1 4992 16 3194471 NM_012360 NP_036492 A/G F75S minus 2703142 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 58 0.38 121 "by doubleHit,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 1" 14988 rs1834026 OR1F1 4992 16 3194471 NM_012360 NP_036492 A/G F75S minus 2703142 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 322 0.48 121 "by doubleHit,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 1" 14989 rs1834026 OR1F1 4992 16 3194471 NM_012360 NP_036492 A/G F75S minus 2703142 1303 SEQUENOM CEPH CEPH (92) 92 0.4 121 "by doubleHit,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 1" 14990 rs1835183 OR4M2 390538 15 19870226 XM_372548 XP_372548 C/T G96E minus 23372783 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by doubleHit,submitter,freq,cluster" 15q11.2 "olfactory receptor, family 4, subfamily M, member 2" 14991 rs1835183 OR4M2 390538 15 19870226 XM_372548 XP_372548 C/T G96E minus 23372783 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 15q11.2 "olfactory receptor, family 4, subfamily M, member 2" 14992 rs1835183 OR4M2 390538 15 19870226 XM_372548 XP_372548 C/T G96E minus 23372783 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 15q11.2 "olfactory receptor, family 4, subfamily M, member 2" 14993 rs1841958 KLRC4 8302 12 10453356 NM_013431 NP_038459 A/C I29S plus 3253629 738 YUSUKE JBIC-ALLELE Japanese (752) 1420 0.23 120 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 14994 rs1841958 KLRC4 8302 12 10453356 NM_013431 NP_038459 A/C I29S plus 5472183 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 120 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 14995 rs1841958 KLRC4 8302 12 10453356 NM_013431 NP_038459 A/C I29S plus 5472183 1303 SEQUENOM CEPH CEPH (92) 92 0.17 120 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 14996 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 901 AFFY AfAm 40 0.25 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 14997 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 902 AFFY Caucasian 36 0.28 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 14998 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 903 AFFY Asian 36 0.22 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 14999 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 904 AFFY CEPH 40 0.23 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 15000 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 905 AFFY PDpanel 46 0.39 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 15001 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 2719243 906 AFFY APE 2 1 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 15002 rs1847632 OR52I2 143502 11 4565118 XM_089863 XP_089863 A/G T158M minus 3379127 1303 SEQUENOM CEPH CEPH (92) 92 0.29 120 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily I, member 2" 15003 rs1851724 OR13C5 138799 9 104440477 XM_071093 XP_071093 C/T M258T minus 2723980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 5" 15004 rs1851725 OR13C5 138799 9 104440381 XM_071093 XP_071093 C/T M290T minus 2723981 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.16 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 5" 15005 rs1859059 PLEKHM1 9842 17 40901536 NM_014798 NP_055613 A/G R377H minus 3789846 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit" 17q21.31 "pleckstrin homology domain containing, family M (with RUN domain) member 1" 15006 rs1859059 PLEKHM1 9842 17 40901536 NM_014798 NP_055613 A/G R377H minus 24796538 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "HapMap,doubleHit" 17q21.31 "pleckstrin homology domain containing, family M (with RUN domain) member 1" 15007 rs1859298 OR10H1 26539 19 15779323 NM_013940 NP_039228 C/G H175Q plus 2732921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 92 "HapMap,doubleHit" 19p13.1 "olfactory receptor, family 10, subfamily H, member 1" 15008 rs1859298 OR10H1 26539 19 15779323 NM_013940 NP_039228 C/G H175Q plus 2732921 1303 SEQUENOM CEPH CEPH (92) 92 1 92 "HapMap,doubleHit" 19p13.1 "olfactory receptor, family 10, subfamily H, member 1" 15009 rs1859728 B4GALT2 8704 1 44116506 NM_003780 NP_003771 C/G Q122H plus 2733453 1303 SEQUENOM CEPH CEPH (92) 92 1 111 "by cluster,freq" 1p34-p33 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" 15010 rs1859728 B4GALT2 8704 1 44116506 NM_003780 NP_003771 C/G Q122H plus 3226614 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.15 111 "by cluster,freq" 1p34-p33 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" 15011 rs1859728 B4GALT2 8704 1 44116506 NM_030587 NP_085076 C/G E108Q plus 2733453 1303 SEQUENOM CEPH CEPH (92) 92 1 111 "by cluster,freq" 1p34-p33 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" 15012 rs1859728 B4GALT2 8704 1 44116506 NM_030587 NP_085076 C/G E108Q plus 3226614 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.15 111 "by cluster,freq" 1p34-p33 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" 15013 rs1859788 PILRA 29992 7 99616485 NM_013439 NP_038467 C/T R78G minus 2733521 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15014 rs1859788 PILRA 29992 7 99616485 NM_013439 NP_038467 C/T R78G minus 2733521 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.35 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15015 rs1859788 PILRA 29992 7 99616485 NM_013439 NP_038467 C/T R78G minus 5308350 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15016 rs1859788 PILRA 29992 7 99616485 NM_178272 NP_840056 C/T R78G minus 2733521 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15017 rs1859788 PILRA 29992 7 99616485 NM_178272 NP_840056 C/T R78G minus 2733521 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.35 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15018 rs1859788 PILRA 29992 7 99616485 NM_178272 NP_840056 C/T R78G minus 5308350 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15019 rs1859788 PILRA 29992 7 99616485 NM_178273 NP_840057 C/T R78G minus 2733521 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15020 rs1859788 PILRA 29992 7 99616485 NM_178273 NP_840057 C/T R78G minus 2733521 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.35 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15021 rs1859788 PILRA 29992 7 99616485 NM_178273 NP_840057 C/T R78G minus 5308350 1303 SEQUENOM CEPH CEPH (92) 92 0.09 121 "by doubleHit,submitter,freq,cluster" 7q22.1 paired immunoglobin-like type 2 receptor alpha 15022 rs1860447 ABCA9 10350 17 64543052 NM_080283 NP_525022 A/G R353H minus 2734283 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15023 rs1860447 ABCA9 10350 17 64543052 NM_080283 NP_525022 A/G R353H minus 23633839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15024 rs1860447 ABCA9 10350 17 64543052 NM_080283 NP_525022 A/G R353H minus 23633839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15025 rs1860447 ABCA9 10350 17 64543052 NM_080283 NP_525022 A/G R353H minus 23633839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15026 rs1860447 ABCA9 10350 17 64543052 NM_172386 NP_759018 A/G R353H minus 2734283 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15027 rs1860447 ABCA9 10350 17 64543052 NM_172386 NP_759018 A/G R353H minus 23633839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15028 rs1860447 ABCA9 10350 17 64543052 NM_172386 NP_759018 A/G R353H minus 23633839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15029 rs1860447 ABCA9 10350 17 64543052 NM_172386 NP_759018 A/G R353H minus 23633839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 15030 rs1860961 TMEM16B 57101 12 5711994 NM_020373 NP_065106 G/T S501A minus 2734882 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 111 "HapMap,freq,cluster" 12p13.3 transmembrane protein 16B 15031 rs1860961 TMEM16B 57101 12 5711994 NM_020373 NP_065106 G/T S501A minus 2734882 1303 SEQUENOM CEPH CEPH (92) 92 0.1 111 "HapMap,freq,cluster" 12p13.3 transmembrane protein 16B 15032 rs1860961 TMEM16B 57101 12 5711994 NM_020373 NP_065106 G/T S501A minus 3214245 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.13 111 "HapMap,freq,cluster" 12p13.3 transmembrane protein 16B 15033 rs1862136 NYD-TSP1 84654 5 79651839 NM_032567 NP_115956 C/G V17L plus 2736281 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 testis-specific protein NYD-TSP1 15034 rs1862136 NYD-TSP1 84654 5 79651839 NM_032567 NP_115956 C/G V17L plus 24418451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 testis-specific protein NYD-TSP1 15035 rs1862136 NYD-TSP1 84654 5 79651839 NM_032567 NP_115956 C/G V17L plus 24418451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 testis-specific protein NYD-TSP1 15036 rs1862136 NYD-TSP1 84654 5 79651839 NM_032567 NP_115956 C/G V17L plus 24418451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 testis-specific protein NYD-TSP1 15037 rs1863703 STK36 27148 2 219369893 NM_015690 NP_056505 A/G K295R plus 2738221 1303 SEQUENOM CEPH CEPH (92) 92 0.04 120 "by doubleHit,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 15038 rs1863704 STK36 27148 2 219388180 NM_015690 NP_056505 A/G G1003D plus 2738222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 100 "HapMap,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 15039 rs1863704 STK36 27148 2 219388180 NM_015690 NP_056505 A/G G1003D plus 2738222 1303 SEQUENOM CEPH CEPH (92) 46 0.5 100 "HapMap,freq,cluster" 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 15040 rs1863968 ADAMTS16 170690 5 5199395 NM_139056 NP_620687 C/T M110V minus 23882765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 15041 rs1863968 ADAMTS16 170690 5 5199395 NM_139056 NP_620687 C/T M110V minus 23882765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 15042 rs1863968 ADAMTS16 170690 5 5199395 NM_139056 NP_620687 C/T M110V minus 23882765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 15043 rs1864182 APG10L 83734 5 81584996 NM_031482 NP_113670 G/T P220H minus 3250514 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 123 "by doubleHit,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15044 rs1864182 APG10L 83734 5 81584996 NM_031482 NP_113670 G/T P220H minus 24425603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "by doubleHit,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15045 rs1864182 APG10L 83734 5 81584996 NM_031482 NP_113670 G/T P220H minus 24425603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15046 rs1864182 APG10L 83734 5 81584996 NM_031482 NP_113670 G/T P220H minus 24425603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15047 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 2738856 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15048 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 3250515 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15049 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 17858515 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15050 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 24425591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15051 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 24425591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15052 rs1864183 APG10L 83734 5 81584972 NM_031482 NP_113670 A/G T212M minus 24425591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 15053 rs1864312 CRISP3 10321 6 49809398 NM_006061 NP_006052 A/C A134S plus 2739018 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 by freq 6p12.3 cysteine-rich secretory protein 3 15054 rs1864345 FRMPD2 143162 10 49090014 NM_152428 NP_689641 C/T K509E plus 2739059 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11.22 FERM and PDZ domain containing 2 15055 rs1864345 FRMPD2 143162 10 49090014 NM_152428 NP_689641 C/T K509E plus 23777530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11.22 FERM and PDZ domain containing 2 15056 rs1864345 FRMPD2 143162 10 49090014 NM_152428 NP_689641 C/T K509E plus 23777530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11.22 FERM and PDZ domain containing 2 15057 rs1864345 FRMPD2 143162 10 49090014 NM_152428 NP_689641 C/T K509E plus 23777530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11.22 FERM and PDZ domain containing 2 15058 rs1864346 OR6N1 128372 1 155549518 XM_060957 XP_060957 C/T A10T plus 2739060 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 15059 rs1864346 OR6N1 128372 1 155549518 XM_060957 XP_060957 C/T A10T plus 23874529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 15060 rs1864346 OR6N1 128372 1 155549518 XM_060957 XP_060957 C/T A10T plus 23874529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 15061 rs1864346 OR6N1 128372 1 155549518 XM_060957 XP_060957 C/T A10T plus 23874529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 1q23.1 "olfactory receptor, family 6, subfamily N, member 1" 15062 rs1864423 APOB 338 2 21168039 NM_000384 NP_000375 G/T T303N plus 2739147 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 92 HapMap 2p24-p23 apolipoprotein B (including Ag(x) antigen) 15063 rs1864423 APOB 338 2 21168039 NM_000384 NP_000375 G/T T303N plus 2739147 1303 SEQUENOM CEPH CEPH (92) 92 1 92 HapMap 2p24-p23 apolipoprotein B (including Ag(x) antigen) 15064 rs1866374 MAP1B 4131 5 71526718 NM_005909 NP_005900 C/T I594V minus 2741485 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.16 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15065 rs1866374 MAP1B 4131 5 71526718 NM_005909 NP_005900 C/T I594V minus 2741485 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15066 rs1866374 MAP1B 4131 5 71526718 NM_005909 NP_005900 C/T I594V minus 4991843 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15067 rs1866374 MAP1B 4131 5 71526718 NM_032010 NP_114399 C/T I468V minus 2741485 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.16 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15068 rs1866374 MAP1B 4131 5 71526718 NM_032010 NP_114399 C/T I468V minus 2741485 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15069 rs1866374 MAP1B 4131 5 71526718 NM_032010 NP_114399 C/T I468V minus 4991843 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 121 "HapMap,doubleHit,freq,cluster" 5q13 microtubule-associated protein 1B 15070 rs1866389 THBS4 7060 5 79397021 NM_003248 NP_003239 C/G A387P minus 2741510 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13 thrombospondin 4 15071 rs1866389 THBS4 7060 5 79397021 NM_003248 NP_003239 C/G A387P minus 3172955 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13 thrombospondin 4 15072 rs1866389 THBS4 7060 5 79397021 NM_003248 NP_003239 C/G A387P minus 24417338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13 thrombospondin 4 15073 rs1866389 THBS4 7060 5 79397021 NM_003248 NP_003239 C/G A387P minus 24417338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13 thrombospondin 4 15074 rs1866389 THBS4 7060 5 79397021 NM_003248 NP_003239 C/G A387P minus 24417338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 5q13 thrombospondin 4 15075 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 2742710 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.4 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15076 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 2742710 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15077 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 2742710 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.3 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15078 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 2742710 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15079 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 2742710 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15080 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 23663495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15081 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 23663495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15082 rs1867380 AQP9 366 15 56263573 NM_020980 NP_066190 A/G T279A plus 23663495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 15q22.1-22.2 aquaporin 9 15083 rs1867586 ARHGAP22 58504 10 49328949 NM_021226 NP_067049 G/T T410K plus 2742968 1303 SEQUENOM CEPH CEPH (92) 92 0.07 92 by freq 10q11.23 Rho GTPase activating protein 22 15084 rs1868024 MOGAT1 116255 2 223384594 NM_058165 NP_477513 C/T S162P plus 2743545 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.2 monoacylglycerol O-acyltransferase 1 15085 rs1868024 MOGAT1 116255 2 223384594 NM_058165 NP_477513 C/T S162P plus 24362385 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.2 monoacylglycerol O-acyltransferase 1 15086 rs1868024 MOGAT1 116255 2 223384594 NM_058165 NP_477513 C/T S162P plus 24362385 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.2 monoacylglycerol O-acyltransferase 1 15087 rs1868024 MOGAT1 116255 2 223384594 NM_058165 NP_477513 C/T S162P plus 24362385 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q36.2 monoacylglycerol O-acyltransferase 1 15088 rs1869349 PKD1L2 114780 16 79766748 NM_182740 NP_877417 C/T R849H plus 2745139 1303 SEQUENOM CEPH CEPH (92) 92 0.08 92 by freq 16q23.2 polycystic kidney disease 1-like 2 15089 rs1869609 MATN2 4147 8 99060397 NM_002380 NP_002371 C/T K356E minus 2745436 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15090 rs1869609 MATN2 4147 8 99060397 NM_002380 NP_002371 C/T K356E minus 2745436 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15091 rs1869609 MATN2 4147 8 99060397 NM_002380 NP_002371 C/T K356E minus 23515969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15092 rs1869609 MATN2 4147 8 99060397 NM_002380 NP_002371 C/T K356E minus 23515969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15093 rs1869609 MATN2 4147 8 99060397 NM_002380 NP_002371 C/T K356E minus 23515969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15094 rs1869609 MATN2 4147 8 99060397 NM_030583 NP_085072 C/T K356E minus 2745436 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15095 rs1869609 MATN2 4147 8 99060397 NM_030583 NP_085072 C/T K356E minus 2745436 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15096 rs1869609 MATN2 4147 8 99060397 NM_030583 NP_085072 C/T K356E minus 23515969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15097 rs1869609 MATN2 4147 8 99060397 NM_030583 NP_085072 C/T K356E minus 23515969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15098 rs1869609 MATN2 4147 8 99060397 NM_030583 NP_085072 C/T K356E minus 23515969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 8q22 matrilin 2 15099 rs1869788 MRGX4 117196 11 18151540 NM_054032 NP_473373 C/T Y54C minus 2745651 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 "by doubleHit,freq" 11p15.1 G protein-coupled receptor MRGX4 15100 rs1870377 KDR 3791 4 55813902 NM_002253 NP_002244 A/T Q472H plus 2746383 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 15101 rs1870377 KDR 3791 4 55813902 NM_002253 NP_002244 A/T Q472H plus 4474948 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.4 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 15102 rs1870377 KDR 3791 4 55813902 NM_002253 NP_002244 A/T Q472H plus 23961304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 15103 rs1870377 KDR 3791 4 55813902 NM_002253 NP_002244 A/T Q472H plus 23961304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 15104 rs1870377 KDR 3791 4 55813902 NM_002253 NP_002244 A/T Q472H plus 23961304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 15105 rs1871534 SLC39A4 55630 8 145610489 NM_130849 NP_570901 C/G L372V minus 2747857 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 15106 rs1871534 SLC39A4 55630 8 145610489 NM_130849 NP_570901 C/G L372V minus 2747857 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "HapMap,doubleHit,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 15107 rs1877031 STARD3 10948 17 35067606 NM_006804 NP_006795 C/T R117Q minus 2754635 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.31 120 "HapMap,doubleHit,freq,cluster" 17q11-q12 START domain containing 3 15108 rs1877031 STARD3 10948 17 35067606 NM_006804 NP_006795 C/T R117Q minus 2754635 1303 SEQUENOM CEPH CEPH (92) 92 0.4 120 "HapMap,doubleHit,freq,cluster" 17q11-q12 START domain containing 3 15109 rs1877031 STARD3 10948 17 35067606 NM_006804 NP_006795 C/T R117Q minus 5003574 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.46 120 "HapMap,doubleHit,freq,cluster" 17q11-q12 START domain containing 3 15110 rs1878061 IREM2 342510 17 70121684 NM_181449 NP_852114 C/T G158R plus 24558676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.4 123 "by doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 15111 rs1878061 IREM2 342510 17 70121684 NM_181449 NP_852114 C/T G158R plus 24558676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 15112 rs1878061 IREM2 342510 17 70121684 NM_181449 NP_852114 C/T G158R plus 24558676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by doubleHit,freq,cluster" 17q25.2 immune receptor expressed on myeloid cells 2 15113 rs1878326 MFGE8 4240 15 87251591 NM_005928 NP_005919 A/C L76M minus 3206605 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.49 123 "by doubleHit,freq,cluster" 15q25 milk fat globule-EGF factor 8 protein 15114 rs1878326 MFGE8 4240 15 87251591 NM_005928 NP_005919 A/C L76M minus 24508772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 15q25 milk fat globule-EGF factor 8 protein 15115 rs1878326 MFGE8 4240 15 87251591 NM_005928 NP_005919 A/C L76M minus 24508772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 15q25 milk fat globule-EGF factor 8 protein 15116 rs1878326 MFGE8 4240 15 87251591 NM_005928 NP_005919 A/C L76M minus 24508772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 15q25 milk fat globule-EGF factor 8 protein 15117 rs1878740 LRP1B 53353 2 141033847 NM_018557 NP_061027 A/G E3458K minus 2756774 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 15118 rs1878740 LRP1B 53353 2 141033847 NM_018557 NP_061027 A/G E3458K minus 2756774 1303 SEQUENOM CEPH CEPH (92) 92 1 111 "HapMap,doubleHit" 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 15119 rs1880458 PKD2L2 27039 5 137272416 NM_014386 NP_055201 A/G V404I plus 2758820 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 5q31 polycystic kidney disease 2-like 2 15120 rs1880458 PKD2L2 27039 5 137272416 NM_014386 NP_055201 A/G V404I plus 23355153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 5q31 polycystic kidney disease 2-like 2 15121 rs1880458 PKD2L2 27039 5 137272416 NM_014386 NP_055201 A/G V404I plus 23355153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 5q31 polycystic kidney disease 2-like 2 15122 rs1880458 PKD2L2 27039 5 137272416 NM_014386 NP_055201 A/G V404I plus 23355153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 5q31 polycystic kidney disease 2-like 2 15123 rs1881420 ALK 238 2 29328132 NM_004304 NP_004295 A/G K1491R minus 2760055 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15124 rs1881420 ALK 238 2 29328132 NM_004304 NP_004295 A/G K1491R minus 4924871 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.31 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15125 rs1881420 ALK 238 2 29328132 NM_004304 NP_004295 A/G K1491R minus 23225638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15126 rs1881420 ALK 238 2 29328132 NM_004304 NP_004295 A/G K1491R minus 23225638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15127 rs1881420 ALK 238 2 29328132 NM_004304 NP_004295 A/G K1491R minus 23225638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15128 rs1881421 ALK 238 2 29328017 NM_004304 NP_004295 C/G D1529E minus 2760056 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15129 rs1881421 ALK 238 2 29328017 NM_004304 NP_004295 C/G D1529E minus 4924872 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.31 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15130 rs1881421 ALK 238 2 29328017 NM_004304 NP_004295 C/G D1529E minus 23225625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15131 rs1881421 ALK 238 2 29328017 NM_004304 NP_004295 C/G D1529E minus 23225625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15132 rs1881421 ALK 238 2 29328017 NM_004304 NP_004295 C/G D1529E minus 23225625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 2p23 anaplastic lymphoma kinase (Ki-1) 15133 rs1883216 ZNF184 7738 6 27533164 NM_007149 NP_009080 A/C A27S plus 2762312 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 120 "HapMap,doubleHit,submitter,freq,cluster" 6p21.3 zinc finger protein 184 (Kruppel-like) 15134 rs1883216 ZNF184 7738 6 27533164 NM_007149 NP_009080 A/C A27S plus 2762312 1303 SEQUENOM CEPH CEPH (92) 92 0.42 120 "HapMap,doubleHit,submitter,freq,cluster" 6p21.3 zinc finger protein 184 (Kruppel-like) 15135 rs1884084 SERPINA13 388007 14 94179770 NM_207378 NP_997261 G/T Q265H plus 2763360 885 TSC-CSHL HapMap-CEPH-30-trios 57 0.5 121 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 15136 rs1884084 SERPINA13 388007 14 94179770 NM_207378 NP_997261 G/T Q265H plus 2763360 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 15137 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 2763781 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15138 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 2763781 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15139 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 15355728 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.48 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15140 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 15355728 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.45 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15141 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 15355728 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 3 0.5 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15142 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 23689269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15143 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 23689269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 18 0.5 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15144 rs1884444 IL23R 149233 1 67345833 NM_144701 NP_653302 G/T Q3H plus 23689269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.38 123 "HapMap,doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 15145 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 2764567 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15146 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 2764567 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15147 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 2764567 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15148 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 2764567 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15149 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 2764567 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15150 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 4937529 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15151 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 23815165 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15152 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 23815165 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15153 rs1885097 ACIN1 22985 14 22619159 NM_014977 NP_055792 A/G S467P plus 23815165 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 14q11.2 apoptotic chromatin condensation inducer 1 15154 rs1885137 SERPINA11 256394 14 93982649 XM_170754 XP_170754 G/T E412A plus 2764624 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,submitter,freq" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 15155 rs1885137 SERPINA11 256394 14 93982649 XM_170754 XP_170754 G/T E412A plus 24602084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,submitter,freq" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 15156 rs1885137 SERPINA11 256394 14 93982649 XM_170754 XP_170754 G/T E412A plus 24602084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 15157 rs1885137 SERPINA11 256394 14 93982649 XM_170754 XP_170754 G/T E412A plus 24602084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 15158 rs1885434 NRAP 4892 10 115340587 NM_006175 NP_006166 A/G R1531C plus 16362071 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.42 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15159 rs1885434 NRAP 4892 10 115340587 NM_006175 NP_006166 A/G R1531C plus 16362071 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15160 rs1885434 NRAP 4892 10 115340587 NM_006175 NP_006166 A/G R1531C plus 23637269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15161 rs1885434 NRAP 4892 10 115340587 NM_006175 NP_006166 A/G R1531C plus 23637269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15162 rs1885434 NRAP 4892 10 115340587 NM_006175 NP_006166 A/G R1531C plus 23637269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15163 rs1885434 NRAP 4892 10 115340587 NM_198060 NP_932326 A/G R1566C plus 16362071 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.42 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15164 rs1885434 NRAP 4892 10 115340587 NM_198060 NP_932326 A/G R1566C plus 16362071 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15165 rs1885434 NRAP 4892 10 115340587 NM_198060 NP_932326 A/G R1566C plus 23637269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15166 rs1885434 NRAP 4892 10 115340587 NM_198060 NP_932326 A/G R1566C plus 23637269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15167 rs1885434 NRAP 4892 10 115340587 NM_198060 NP_932326 A/G R1566C plus 23637269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 15168 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 2766843 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.13 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15169 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 2766843 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.32 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15170 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 2766843 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.07 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15171 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 2766843 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15172 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 24549553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15173 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 24549553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15174 rs1886996 MPHOSPH1 9585 10 91488107 NM_016195 NP_057279 C/T C1137R plus 24549553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15175 rs1886997 MPHOSPH1 9585 10 91488234 NM_016195 NP_057279 A/G N1179S plus 2766844 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15176 rs1886997 MPHOSPH1 9585 10 91488234 NM_016195 NP_057279 A/G N1179S plus 2766844 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15177 rs1886997 MPHOSPH1 9585 10 91488234 NM_016195 NP_057279 A/G N1179S plus 23580817 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15178 rs1886997 MPHOSPH1 9585 10 91488234 NM_016195 NP_057279 A/G N1179S plus 23580817 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15179 rs1886997 MPHOSPH1 9585 10 91488234 NM_016195 NP_057279 A/G N1179S plus 23580817 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 10q23.32 M-phase phosphoprotein 1 15180 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 901 AFFY AfAm 12 1 92 by freq 6q23-q24 interferon gamma receptor 1 15181 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 902 AFFY Caucasian 24 1 92 by freq 6q23-q24 interferon gamma receptor 1 15182 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 903 AFFY Asian 12 1 92 by freq 6q23-q24 interferon gamma receptor 1 15183 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 904 AFFY CEPH 12 1 92 by freq 6q23-q24 interferon gamma receptor 1 15184 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 905 AFFY PDpanel 48 0.08 92 by freq 6q23-q24 interferon gamma receptor 1 15185 rs1887415 IFNGR1 3459 6 137560931 NM_000416 NP_000407 C/T L467P minus 2767330 1303 SEQUENOM CEPH CEPH (92) 92 1 92 by freq 6q23-q24 interferon gamma receptor 1 15186 rs1889565 DUSP5 1847 10 112256813 NM_004419 NP_004410 A/G A220V minus 2769912 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 10q25 dual specificity phosphatase 5 15187 rs1890908 SYNE2 23224 14 63588788 NM_015180 NP_055995 A/G S2801G plus 24129754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15188 rs1890908 SYNE2 23224 14 63588788 NM_015180 NP_055995 A/G S2801G plus 24129754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15189 rs1890908 SYNE2 23224 14 63588788 NM_015180 NP_055995 A/G S2801G plus 24129754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15190 rs1891110 FAM24B 196792 10 124600017 NM_152644 NP_689857 A/G P2L plus 3218939 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 123 "by doubleHit,submitter,freq,cluster" 10q26.13 "family with sequence similarity 24, member B" 15191 rs1891110 FAM24B 196792 10 124600017 NM_152644 NP_689857 A/G P2L plus 24573951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 10q26.13 "family with sequence similarity 24, member B" 15192 rs1891110 FAM24B 196792 10 124600017 NM_152644 NP_689857 A/G P2L plus 24573951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 10q26.13 "family with sequence similarity 24, member B" 15193 rs1891110 FAM24B 196792 10 124600017 NM_152644 NP_689857 A/G P2L plus 24573951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 10q26.13 "family with sequence similarity 24, member B" 15194 rs1892442 OR2T35 403244 1 245115545 XM_060318 XP_060318 C/T Q743R plus 23161542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1 "olfactory receptor, family 2, subfamily T, member 35" 15195 rs1892442 OR2T35 403244 1 245115545 XM_060318 XP_060318 C/T Q743R plus 23161542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by cluster,freq" 1 "olfactory receptor, family 2, subfamily T, member 35" 15196 rs1892442 OR2T35 403244 1 245115545 XM_060318 XP_060318 C/T Q743R plus 23161542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1 "olfactory receptor, family 2, subfamily T, member 35" 15197 rs1893764 OR10G4 390264 11 123392032 XM_372436 XP_372436 A/G P181S minus 2775531 1303 SEQUENOM CEPH CEPH (92) 92 1 111 by doubleHit 11q24.2 "olfactory receptor, family 10, subfamily G, member 4" 15198 rs1893963 DSC2 1824 18 26903040 NM_004949 NP_004940 A/G I776V minus 2775806 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15199 rs1893963 DSC2 1824 18 26903040 NM_004949 NP_004940 A/G I776V minus 2775806 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15200 rs1893963 DSC2 1824 18 26903040 NM_004949 NP_004940 A/G I776V minus 23765476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15201 rs1893963 DSC2 1824 18 26903040 NM_004949 NP_004940 A/G I776V minus 23765476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15202 rs1893963 DSC2 1824 18 26903040 NM_004949 NP_004940 A/G I776V minus 23765476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15203 rs1893963 DSC2 1824 18 26903040 NM_024422 NP_077740 A/G I776V minus 2775806 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15204 rs1893963 DSC2 1824 18 26903040 NM_024422 NP_077740 A/G I776V minus 2775806 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15205 rs1893963 DSC2 1824 18 26903040 NM_024422 NP_077740 A/G I776V minus 23765476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15206 rs1893963 DSC2 1824 18 26903040 NM_024422 NP_077740 A/G I776V minus 23765476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15207 rs1893963 DSC2 1824 18 26903040 NM_024422 NP_077740 A/G I776V minus 23765476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12.1 desmocollin 2 15208 rs1894176 TMPRSS4 56649 11 117483788 NM_019894 NP_063947 C/T R177Q minus 2776115 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15209 rs1894176 TMPRSS4 56649 11 117483788 NM_019894 NP_063947 C/T R177Q minus 23602897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15210 rs1894176 TMPRSS4 56649 11 117483788 NM_019894 NP_063947 C/T R177Q minus 23602897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15211 rs1894176 TMPRSS4 56649 11 117483788 NM_019894 NP_063947 C/T R177Q minus 23602897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15212 rs1894176 TMPRSS4 56649 11 117483788 NM_183247 NP_899070 C/T R175Q minus 2776115 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15213 rs1894176 TMPRSS4 56649 11 117483788 NM_183247 NP_899070 C/T R175Q minus 23602897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15214 rs1894176 TMPRSS4 56649 11 117483788 NM_183247 NP_899070 C/T R175Q minus 23602897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15215 rs1894176 TMPRSS4 56649 11 117483788 NM_183247 NP_899070 C/T R175Q minus 23602897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15216 rs1894473 ASC1p100 84164 22 28545755 NM_032204 NP_115580 A/G R96C plus 3203625 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.49 120 "HapMap,doubleHit,cluster" 22q12.1 ASC-1 complex subunit P100 15217 rs1894473 ASC1p100 84164 22 28545755 NM_032204 NP_115580 A/G R96C plus 5312023 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 22q12.1 ASC-1 complex subunit P100 15218 rs1894704 HPS4 89781 22 25178459 NM_022081 NP_071364 A/C Q625H plus 4474314 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.24 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15219 rs1894704 HPS4 89781 22 25178459 NM_022081 NP_071364 A/C Q625H plus 8000717 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15220 rs1894704 HPS4 89781 22 25178459 NM_022081 NP_071364 A/C Q625H plus 23563097 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15221 rs1894704 HPS4 89781 22 25178459 NM_022081 NP_071364 A/C Q625H plus 23563097 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15222 rs1894704 HPS4 89781 22 25178459 NM_022081 NP_071364 A/C Q625H plus 23563097 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.28 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15223 rs1894704 HPS4 89781 22 25178459 NM_152841 NP_690054 A/C Q620H plus 4474314 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.24 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15224 rs1894704 HPS4 89781 22 25178459 NM_152841 NP_690054 A/C Q620H plus 8000717 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15225 rs1894704 HPS4 89781 22 25178459 NM_152841 NP_690054 A/C Q620H plus 23563097 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15226 rs1894704 HPS4 89781 22 25178459 NM_152841 NP_690054 A/C Q620H plus 23563097 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15227 rs1894704 HPS4 89781 22 25178459 NM_152841 NP_690054 A/C Q620H plus 23563097 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.28 123 "by doubleHit,submitter,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15228 rs1894706 HPS4 89781 22 25178995 NM_022081 NP_071364 A/G H606Y plus 8015130 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15229 rs1894706 HPS4 89781 22 25178995 NM_022081 NP_071364 A/G H606Y plus 24077197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15230 rs1894706 HPS4 89781 22 25178995 NM_022081 NP_071364 A/G H606Y plus 24077197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15231 rs1894706 HPS4 89781 22 25178995 NM_022081 NP_071364 A/G H606Y plus 24077197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15232 rs1894706 HPS4 89781 22 25178995 NM_152841 NP_690054 A/G H601Y plus 8015130 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15233 rs1894706 HPS4 89781 22 25178995 NM_152841 NP_690054 A/G H601Y plus 24077197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15234 rs1894706 HPS4 89781 22 25178995 NM_152841 NP_690054 A/G H601Y plus 24077197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15235 rs1894706 HPS4 89781 22 25178995 NM_152841 NP_690054 A/G H601Y plus 24077197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15236 rs1895245 NMUR2 56923 5 151752248 NM_020167 NP_064552 G/T F315L plus 24458026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 15237 rs1895245 NMUR2 56923 5 151752248 NM_020167 NP_064552 G/T F315L plus 24458026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 15238 rs1895245 NMUR2 56923 5 151752248 NM_020167 NP_064552 G/T F315L plus 24458026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 15239 rs1898883 DISP2 85455 15 38443137 NM_033510 NP_277045 C/G P47A minus 2781651 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 15q14 dispatched homolog 2 (Drosophila) 15240 rs1904589 NODAL 4838 10 71865445 NM_018055 NP_060525 C/T H165R plus 3253935 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.05 123 "by doubleHit,freq,cluster" 10q22.1 nodal homolog (mouse) 15241 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 2793206 901 AFFY AfAm 12 0.17 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15242 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 2793206 902 AFFY Caucasian 12 0.5 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15243 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 2793206 903 AFFY Asian 12 0.25 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15244 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 2793206 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15245 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 2793206 905 AFFY PDpanel 46 0.46 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15246 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 24436034 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15247 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 24436034 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15248 rs1908946 LRMP 4033 12 25134382 NM_006152 NP_006143 C/G C197S minus 24436034 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 15249 rs1912403 NEDD4 4734 15 53996225 NM_198400 NP_940682 C/T M33V plus 2797203 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,doubleHit,submitter,freq" 15q "neural precursor cell expressed, developmentally down-regulated 4" 15250 rs1914016 RC3 23312 15 49568037 NM_015263 NP_056078 C/T R1684K plus 2799042 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 15q15.3 rabconnectin-3 15251 rs1914016 RC3 23312 15 49568037 NM_015263 NP_056078 C/T R1684K plus 2799042 1303 SEQUENOM CEPH CEPH (92) 92 1 111 HapMap 15q15.3 rabconnectin-3 15252 rs1916036 CRTAM 56253 11 122247238 NM_019604 NP_062550 C/G A368G plus 2801386 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 "HapMap,doubleHit,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 15253 rs1916036 CRTAM 56253 11 122247238 NM_019604 NP_062550 C/G A368G plus 2801386 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,doubleHit,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 15254 rs1918496 USP52 9924 12 55008327 NM_014871 NP_055686 A/C I179L minus 3808435 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 ubiquitin specific protease 52 15255 rs1918496 USP52 9924 12 55008327 NM_014871 NP_055686 A/C I179L minus 3808435 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 ubiquitin specific protease 52 15256 rs1918496 USP52 9924 12 55008327 NM_014871 NP_055686 A/C I179L minus 23448186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 ubiquitin specific protease 52 15257 rs1918496 USP52 9924 12 55008327 NM_014871 NP_055686 A/C I179L minus 23448186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 ubiquitin specific protease 52 15258 rs1918496 USP52 9924 12 55008327 NM_014871 NP_055686 A/C I179L minus 23448186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 ubiquitin specific protease 52 15259 rs1919954 OR2A14 135941 7 143277056 XM_069616 XP_069616 A/G H376Y minus 2805998 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily A, member 14" 15260 rs1920314 SLC15A2 6565 3 123142464 NM_021082 NP_066568 G/T M704L minus 2806409 1303 SEQUENOM CEPH CEPH (92) 92 0.44 92 by freq 3q21.1 "solute carrier family 15 (H+/peptide transporter), member 2" 15261 rs1923185 GMNN 51053 6 24888871 NM_015895 NP_056979 A/C N18T plus 3255127 506 NCBI NIHPDR NIHPDR 166 0.22 123 "by doubleHit,submitter,freq,cluster" 6p22.1 "geminin, DNA replication inhibitor" 15262 rs1923185 GMNN 51053 6 24888871 NM_015895 NP_056979 A/C N18T plus 24166885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 6p22.1 "geminin, DNA replication inhibitor" 15263 rs1923185 GMNN 51053 6 24888871 NM_015895 NP_056979 A/C N18T plus 24166885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 6p22.1 "geminin, DNA replication inhibitor" 15264 rs1923185 GMNN 51053 6 24888871 NM_015895 NP_056979 A/C N18T plus 24166885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 6p22.1 "geminin, DNA replication inhibitor" 15265 rs1925368 ABTB2 25841 11 34334957 NM_145804 NP_665803 C/G H64Q plus 4926797 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.34 120 "by doubleHit,freq,cluster" 11p13 ankyrin repeat and BTB (POZ) domain containing 2 15266 rs1926447 CPB2 1361 13 45527945 NM_001872 NP_001863 C/T I347T minus 2813995 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15267 rs1926447 CPB2 1361 13 45527945 NM_001872 NP_001863 C/T I347T minus 16360831 649 FHCRC POPU1 USA (20) 40 0.4 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15268 rs1926447 CPB2 1361 13 45527945 NM_001872 NP_001863 C/T I347T minus 24666453 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15269 rs1926447 CPB2 1361 13 45527945 NM_001872 NP_001863 C/T I347T minus 24666453 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15270 rs1926447 CPB2 1361 13 45527945 NM_001872 NP_001863 C/T I347T minus 24666453 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15271 rs1926447 CPB2 1361 13 45527945 NM_016413 NP_057497 C/T I310T minus 2813995 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15272 rs1926447 CPB2 1361 13 45527945 NM_016413 NP_057497 C/T I310T minus 16360831 649 FHCRC POPU1 USA (20) 40 0.4 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15273 rs1926447 CPB2 1361 13 45527945 NM_016413 NP_057497 C/T I310T minus 24666453 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15274 rs1926447 CPB2 1361 13 45527945 NM_016413 NP_057497 C/T I310T minus 24666453 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15275 rs1926447 CPB2 1361 13 45527945 NM_016413 NP_057497 C/T I310T minus 24666453 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 13q14.11 "carboxypeptidase B2 (plasma, carboxypeptidase U)" 15276 rs1932618 BAI3 577 6 69723405 NM_001704 NP_001695 A/G N503S plus 3211228 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.1 123 "by doubleHit,freq,cluster" 6q12 brain-specific angiogenesis inhibitor 3 15277 rs1932618 BAI3 577 6 69723405 NM_001704 NP_001695 A/G N503S plus 24447601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 6q12 brain-specific angiogenesis inhibitor 3 15278 rs1932618 BAI3 577 6 69723405 NM_001704 NP_001695 A/G N503S plus 24447601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 6q12 brain-specific angiogenesis inhibitor 3 15279 rs1932618 BAI3 577 6 69723405 NM_001704 NP_001695 A/G N503S plus 24447601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q12 brain-specific angiogenesis inhibitor 3 15280 rs1933631 CAPN9 10753 1 227221464 NM_006615 NP_006606 A/C K322Q plus 24298094 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 15281 rs1933631 CAPN9 10753 1 227221464 NM_006615 NP_006606 A/C K322Q plus 24298094 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 15282 rs1933631 CAPN9 10753 1 227221464 NM_006615 NP_006606 A/C K322Q plus 24298094 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 15283 rs1939015 MMP27 64066 11 102081585 NM_022122 NP_071405 A/G T24M plus 2829306 3 KWOK C USA Caucasian (30) 84 1 121 by doubleHit 11q24 matrix metalloproteinase 27 15284 rs1939015 MMP27 64066 11 102081585 NM_022122 NP_071405 A/G T24M plus 2829306 5 KWOK B USA African-American (30) 84 1 121 by doubleHit 11q24 matrix metalloproteinase 27 15285 rs1939015 MMP27 64066 11 102081585 NM_022122 NP_071405 A/G T24M plus 2829306 7 KWOK A Chinese (30) 84 1 121 by doubleHit 11q24 matrix metalloproteinase 27 15286 rs1940475 MMP8 4317 11 102098458 NM_002424 NP_002415 C/T K87E plus 2831389 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 15287 rs1940475 MMP8 4317 11 102098458 NM_002424 NP_002415 C/T K87E plus 3212400 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 15288 rs1940475 MMP8 4317 11 102098458 NM_002424 NP_002415 C/T K87E plus 24072884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 15289 rs1940475 MMP8 4317 11 102098458 NM_002424 NP_002415 C/T K87E plus 24072884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 15290 rs1940475 MMP8 4317 11 102098458 NM_002424 NP_002415 C/T K87E plus 24072884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 15291 rs1941635 TMPRSS4 56649 11 117487705 NM_019894 NP_063947 G/T V208G plus 2833003 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 "by doubleHit,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15292 rs1941635 TMPRSS4 56649 11 117487705 NM_183247 NP_899070 G/T V206G plus 2833003 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 "by doubleHit,freq,cluster" 11q23.3 "transmembrane protease, serine 4" 15293 rs1942418 MYO5B 4645 18 45637241 XM_371116 XP_371116 A/G G1808E minus 2834222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 111 "HapMap,submitter,freq,cluster" 18q21 myosin VB 15294 rs1942418 MYO5B 4645 18 45637241 XM_371116 XP_371116 A/G G1808E minus 3212543 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.42 111 "HapMap,submitter,freq,cluster" 18q21 myosin VB 15295 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.03 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15296 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 60 0.05 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15297 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.13 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15298 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 328 0.13 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15299 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15300 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 2835524 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15301 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 24601004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15302 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 24601004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15303 rs1943330 CDH20 28316 18 57325739 NM_031891 NP_114097 A/C P328H plus 24601004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq" 18q22-q23 "cadherin 20, type 2" 15304 rs1943382 SLAC2-B 23086 11 107885545 NM_015065 NP_055880 A/G N1967D minus 2835588 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,cluster" 11q23.1 SLAC2-B 15305 rs1944169 CNTN5 53942 11 99726806 NM_014361 NP_055176 A/T Y1065F minus 2836638 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15306 rs1944169 CNTN5 53942 11 99726806 NM_014361 NP_055176 A/T Y1065F minus 23624255 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15307 rs1944169 CNTN5 53942 11 99726806 NM_014361 NP_055176 A/T Y1065F minus 23624255 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15308 rs1944169 CNTN5 53942 11 99726806 NM_014361 NP_055176 A/T Y1065F minus 23624255 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15309 rs1944169 CNTN5 53942 11 99726806 NM_175566 NP_780775 A/T Y991F minus 2836638 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15310 rs1944169 CNTN5 53942 11 99726806 NM_175566 NP_780775 A/T Y991F minus 23624255 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15311 rs1944169 CNTN5 53942 11 99726806 NM_175566 NP_780775 A/T Y991F minus 23624255 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15312 rs1944169 CNTN5 53942 11 99726806 NM_175566 NP_780775 A/T Y991F minus 23624255 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q21-q22.2 contactin 5 15313 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 2836755 692 TSC-WICGR WICGR_CAUCASIAN CEPH Caucasians (93) 86 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15314 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 2836755 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 54 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15315 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 2836755 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15316 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 2836755 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15317 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 2990442 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15318 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 23532745 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15319 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 23532745 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15320 rs1944270 SERPINB8 5271 18 59798049 NM_002640 NP_002631 C/T R68Q minus 23532745 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15321 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 2836755 692 TSC-WICGR WICGR_CAUCASIAN CEPH Caucasians (93) 86 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15322 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 2836755 766 TSC-CSHL WICGR1_CAUCASIAN WICGR Caucasian (93) 54 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15323 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 2836755 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15324 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 2836755 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15325 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 2990442 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15326 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 23532745 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15327 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 23532745 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15328 rs1944270 SERPINB8 5271 18 59798049 NM_198833 NP_942130 C/T R68Q minus 23532745 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 15329 rs1949471 DLG1 1739 3 198353552 NM_004087 NP_004078 C/T R278Q plus 2843379 1303 SEQUENOM CEPH CEPH (92) 92 0.26 100 "by cluster,freq" 3q29 "discs, large homolog 1 (Drosophila)" 15330 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 2845017 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15331 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 2845017 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15332 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 3239445 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15333 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 24129796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15334 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 24129796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15335 rs1950902 MTHFD1 4522 14 63952133 NM_005956 NP_005947 C/T K134R minus 24129796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 15336 rs1950952 MGEA6 4253 14 38847427 NM_005930 NP_005921 C/G E360Q plus 2845070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15337 rs1950952 MGEA6 4253 14 38847427 NM_005930 NP_005921 C/G E360Q plus 2845070 1303 SEQUENOM CEPH CEPH (92) 92 0.46 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15338 rs1950952 MGEA6 4253 14 38847427 NM_203354 NP_976229 C/G E348Q plus 2845070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15339 rs1950952 MGEA6 4253 14 38847427 NM_203354 NP_976229 C/G E348Q plus 2845070 1303 SEQUENOM CEPH CEPH (92) 92 0.46 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15340 rs1950952 MGEA6 4253 14 38847427 NM_203355 NP_976230 C/G E360Q plus 2845070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15341 rs1950952 MGEA6 4253 14 38847427 NM_203355 NP_976230 C/G E360Q plus 2845070 1303 SEQUENOM CEPH CEPH (92) 92 0.46 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15342 rs1950952 MGEA6 4253 14 38847427 NM_203356 NP_976231 C/G E331Q plus 2845070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15343 rs1950952 MGEA6 4253 14 38847427 NM_203356 NP_976231 C/G E331Q plus 2845070 1303 SEQUENOM CEPH CEPH (92) 92 0.46 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15344 rs1950952 MGEA6 4253 14 38847427 NM_203357 NP_976232 C/G E285Q plus 2845070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15345 rs1950952 MGEA6 4253 14 38847427 NM_203357 NP_976232 C/G E285Q plus 2845070 1303 SEQUENOM CEPH CEPH (92) 92 0.46 92 "HapMap,doubleHit,submitter,freq" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 15346 rs1953758 ATRNL1 26033 10 117065165 NM_207303 NP_997186 A/G S989N plus 2848444 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 10q26 attractin-like 1 15347 rs1953758 ATRNL1 26033 10 117065165 NM_207303 NP_997186 A/G S989N plus 23279759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q26 attractin-like 1 15348 rs1953758 ATRNL1 26033 10 117065165 NM_207303 NP_997186 A/G S989N plus 23279759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q26 attractin-like 1 15349 rs1953758 ATRNL1 26033 10 117065165 NM_207303 NP_997186 A/G S989N plus 23279759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q26 attractin-like 1 15350 rs1958715 OR4L1 122742 14 19598047 XM_063310 XP_063310 A/G D2N plus 23616870 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15351 rs1958715 OR4L1 122742 14 19598047 XM_063310 XP_063310 A/G D2N plus 23616870 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15352 rs1958715 OR4L1 122742 14 19598047 XM_063310 XP_063310 A/G D2N plus 23616870 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15353 rs1958716 OR4L1 122742 14 19598161 XM_063310 XP_063310 A/G M40V plus 23616880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15354 rs1958716 OR4L1 122742 14 19598161 XM_063310 XP_063310 A/G M40V plus 23616880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15355 rs1958716 OR4L1 122742 14 19598161 XM_063310 XP_063310 A/G M40V plus 23616880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15356 rs1959630 OR4L1 122742 14 19598199 XM_063310 XP_063310 A/C R52S minus 23616888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15357 rs1959630 OR4L1 122742 14 19598199 XM_063310 XP_063310 A/C R52S minus 23616888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.08 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15358 rs1959630 OR4L1 122742 14 19598199 XM_063310 XP_063310 A/C R52S minus 23616888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily L, member 1" 15359 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15360 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 901 AFFY AfAm 36 0.44 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15361 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 902 AFFY Caucasian 18 0.5 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15362 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 903 AFFY Asian 36 0.28 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15363 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 904 AFFY CEPH 19 0.5 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15364 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 905 AFFY PDpanel 40 0.45 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15365 rs1961760 BDP1 55814 5 70842405 NM_018429 NP_060899 A/T F1244I minus 2864652 906 AFFY APE 4 1 116 "HapMap,doubleHit,submitter,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 15366 rs1962101 AOAH 313 7 36444945 NM_001637 NP_001628 A/C S153Y minus 2865104 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 92 HapMap 7p14-p12 acyloxyacyl hydrolase (neutrophil) 15367 rs1962101 AOAH 313 7 36444945 NM_001637 NP_001628 A/C S153Y minus 2865104 1303 SEQUENOM CEPH CEPH (92) 92 1 92 HapMap 7p14-p12 acyloxyacyl hydrolase (neutrophil) 15368 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 2865531 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.1 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15369 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 2865531 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15370 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 2865531 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.15 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15371 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 2865531 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15372 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 2865531 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15373 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 3177272 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.41 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15374 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 24455929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15375 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 24455929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15376 rs1962519 MYOM1 8736 18 3178976 NM_003803 NP_003794 A/G S181P plus 24455929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 15377 rs1965208 OR2D2 120776 11 6869820 XM_062286 XP_062286 A/G I163T plus 23537616 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by submitter,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15378 rs1965208 OR2D2 120776 11 6869820 XM_062286 XP_062286 A/G I163T plus 23537616 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15379 rs1965208 OR2D2 120776 11 6869820 XM_062286 XP_062286 A/G I163T plus 23537616 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15380 rs1965209 OR2D2 120776 11 6869866 XM_062286 XP_062286 A/G S148P plus 2868587 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15381 rs1965209 OR2D2 120776 11 6869866 XM_062286 XP_062286 A/G S148P plus 24518583 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15382 rs1965209 OR2D2 120776 11 6869866 XM_062286 XP_062286 A/G S148P plus 24518583 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15383 rs1965209 OR2D2 120776 11 6869866 XM_062286 XP_062286 A/G S148P plus 24518583 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 15384 rs1966265 FGFR4 2264 5 176449237 NM_002011 NP_002002 A/G V10I plus 2869787 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 15385 rs1966265 FGFR4 2264 5 176449237 NM_022963 NP_075252 A/G V10I plus 2869787 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 15386 rs1966265 FGFR4 2264 5 176449237 NM_213647 NP_998812 A/G V10I plus 2869787 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 5q35.1-qter fibroblast growth factor receptor 4 15387 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 2869892 638 TSC-CSHL TSC_42_AA TSC African American (42) 78 0.19 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15388 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 2869892 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 74 0.22 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15389 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 2869892 640 TSC-CSHL TSC_42_A TSC Asian (42) 83 0.31 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15390 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 2869892 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15391 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 24201779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15392 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 24201779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15393 rs1966357 OR10H3 26532 19 15713223 NM_013938 NP_039226 A/C R7S plus 24201779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 15394 rs1966836 OR1S1 219959 11 57738805 XM_166917 XP_166917 C/T S5G minus 23592247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 15395 rs1966836 OR1S1 219959 11 57738805 XM_166917 XP_166917 C/T S5G minus 23592247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 15396 rs1966836 OR1S1 219959 11 57738805 XM_166917 XP_166917 C/T S5G minus 23592247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 15397 rs1968090 ZNF543 125919 19 62531379 NM_213598 NP_998763 A/T L246H plus 2871875 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.3 121 "HapMap,freq,cluster" 19q13.43 zinc finger protein 543 15398 rs1968090 ZNF543 125919 19 62531379 NM_213598 NP_998763 A/T L246H plus 2871875 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.3 121 "HapMap,freq,cluster" 19q13.43 zinc finger protein 543 15399 rs1968090 ZNF543 125919 19 62531379 NM_213598 NP_998763 A/T L246H plus 2871875 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.45 121 "HapMap,freq,cluster" 19q13.43 zinc finger protein 543 15400 rs1968090 ZNF543 125919 19 62531379 NM_213598 NP_998763 A/T L246H plus 2871875 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,freq,cluster" 19q13.43 zinc finger protein 543 15401 rs1968956 ELTD1 64123 1 79070848 XM_371262 XP_371262 G/T H740Q plus 2872848 1303 SEQUENOM CEPH CEPH (92) 92 0.18 92 by freq 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 15402 rs1972551 FABP5L3 220832 7 151577502 XM_165511 XP_165511 A/C N42T plus 2876905 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 120 "HapMap,doubleHit,cluster" 7q36.2 fatty acid binding protein 5-like 3 15403 rs1974777 GEMIN5 25929 5 154271602 NM_015465 NP_056280 A/G R682Q minus 2879379 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,submitter,freq,cluster" 5q33.2 gem (nuclear organelle) associated protein 5 15404 rs1974777 GEMIN5 25929 5 154271602 NM_015465 NP_056280 A/G R682Q minus 23470849 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 5q33.2 gem (nuclear organelle) associated protein 5 15405 rs1974777 GEMIN5 25929 5 154271602 NM_015465 NP_056280 A/G R682Q minus 23470849 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 5q33.2 gem (nuclear organelle) associated protein 5 15406 rs1974777 GEMIN5 25929 5 154271602 NM_015465 NP_056280 A/G R682Q minus 23470849 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 5q33.2 gem (nuclear organelle) associated protein 5 15407 rs1974982 LILRA1 11024 19 59797555 NM_006863 NP_006854 C/T R12G minus 2879615 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1" 15408 rs1975937 ZNF540 163255 19 42783772 NM_152606 NP_689819 A/T D53V plus 2880679 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 540 15409 rs1975937 ZNF540 163255 19 42783772 NM_152606 NP_689819 A/T D53V plus 2880679 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 540 15410 rs1975937 ZNF540 163255 19 42783772 NM_152606 NP_689819 A/T D53V plus 23986128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 540 15411 rs1975937 ZNF540 163255 19 42783772 NM_152606 NP_689819 A/T D53V plus 23986128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 540 15412 rs1975937 ZNF540 163255 19 42783772 NM_152606 NP_689819 A/T D53V plus 23986128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.13 zinc finger protein 540 15413 rs1977420 MMRP19 51074 11 34866973 NM_015957 NP_057041 C/T C76Y plus 2882326 1303 SEQUENOM CEPH CEPH (92) 92 0.38 121 "by doubleHit,freq,cluster" 11p13 likely ortholog of mouse monocyte macrophage 19 15414 rs1978066 USP31 57478 16 23009528 NM_020718 NP_065769 G/T D445Y minus 23964578 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p12.3 ubiquitin specific protease 31 15415 rs1978066 USP31 57478 16 23009528 NM_020718 NP_065769 G/T D445Y minus 23964578 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16p12.3 ubiquitin specific protease 31 15416 rs1978066 USP31 57478 16 23009528 NM_020718 NP_065769 G/T D445Y minus 23964578 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 16p12.3 ubiquitin specific protease 31 15417 rs1978717 ZNF615 284370 19 57189062 NM_198480 NP_940882 C/T T360I minus 2883779 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 615 15418 rs1978717 ZNF615 284370 19 57189062 NM_198480 NP_940882 C/T T360I minus 23776904 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 615 15419 rs1978717 ZNF615 284370 19 57189062 NM_198480 NP_940882 C/T T360I minus 23776904 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 615 15420 rs1978717 ZNF615 284370 19 57189062 NM_198480 NP_940882 C/T T360I minus 23776904 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 615 15421 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 2884389 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15422 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 3177114 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.47 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15423 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 5586917 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.25 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15424 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 5586917 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15425 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 5586917 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15426 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 5586917 777 SNP500CANCER HISP1 Hispanic (23) 44 0.2 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15427 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 5586917 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15428 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 23644784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15429 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 23644784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15430 rs1979277 SHMT1 6470 17 18172821 NM_004169 NP_004160 A/G L474F plus 23644784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15431 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 2884389 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15432 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 3177114 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.47 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15433 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 5586917 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.25 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15434 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 5586917 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.32 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15435 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 5586917 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15436 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 5586917 777 SNP500CANCER HISP1 Hispanic (23) 44 0.2 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15437 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 5586917 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15438 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 23644784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15439 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 23644784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15440 rs1979277 SHMT1 6470 17 18172821 NM_148918 NP_683718 A/G L435F plus 23644784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 "HapMap,doubleHit,freq,cluster" 17p11.2 serine hydroxymethyltransferase 1 (soluble) 15441 rs1979370 DNAI2 64446 17 69819914 NM_023036 NP_075462 A/G A558T plus 2884493 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by doubleHit,freq,cluster" 17q25 "dynein, axonemal, intermediate polypeptide 2" 15442 rs1979370 DNAI2 64446 17 69819914 NM_023036 NP_075462 A/G A558T plus 3216626 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.15 123 "by doubleHit,freq,cluster" 17q25 "dynein, axonemal, intermediate polypeptide 2" 15443 rs1979370 DNAI2 64446 17 69819914 NM_023036 NP_075462 A/G A558T plus 23460845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 17q25 "dynein, axonemal, intermediate polypeptide 2" 15444 rs1979370 DNAI2 64446 17 69819914 NM_023036 NP_075462 A/G A558T plus 23460845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 17q25 "dynein, axonemal, intermediate polypeptide 2" 15445 rs1979370 DNAI2 64446 17 69819914 NM_023036 NP_075462 A/G A558T plus 23460845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q25 "dynein, axonemal, intermediate polypeptide 2" 15446 rs1980600 BTN1A1 696 6 26616708 NM_001732 NP_001723 C/T V303A plus 2885811 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 92 HapMap 6p22.1 "butyrophilin, subfamily 1, member A1" 15447 rs1980600 BTN1A1 696 6 26616708 NM_001732 NP_001723 C/T V303A plus 2885811 1303 SEQUENOM CEPH CEPH (92) 92 1 92 HapMap 6p22.1 "butyrophilin, subfamily 1, member A1" 15448 rs1982528 SFRS8 6433 12 130904078 NM_004592 NP_004583 A/G L421P minus 2887858 1303 SEQUENOM CEPH CEPH (92) 91 0.05 121 "by doubleHit,freq,cluster" 12q24.33 "splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)" 15449 rs1983346 KNTC2 10403 18 2606457 NM_006101 NP_006092 C/G A605P plus 2888739 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by submitter,freq" 18p11.31 kinetochore associated 2 15450 rs1983346 KNTC2 10403 18 2606457 NM_006101 NP_006092 C/G A605P plus 24469002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by submitter,freq" 18p11.31 kinetochore associated 2 15451 rs1983346 KNTC2 10403 18 2606457 NM_006101 NP_006092 C/G A605P plus 24469002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq" 18p11.31 kinetochore associated 2 15452 rs1983346 KNTC2 10403 18 2606457 NM_006101 NP_006092 C/G A605P plus 24469002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq" 18p11.31 kinetochore associated 2 15453 rs1983609 PARVB 29780 22 42814769 NM_013327 NP_037459 C/T V58A plus 8018984 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 "by doubleHit,freq,cluster" 22q13.2-q13.33 "parvin, beta" 15454 rs1983864 LOXL4 84171 10 100007443 NM_032211 NP_115587 A/C D405A minus 4936627 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.47 123 "by doubleHit,freq,cluster" 10q24 lysyl oxidase-like 4 15455 rs1983864 LOXL4 84171 10 100007443 NM_032211 NP_115587 A/C D405A minus 24093087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 10q24 lysyl oxidase-like 4 15456 rs1983864 LOXL4 84171 10 100007443 NM_032211 NP_115587 A/C D405A minus 24093087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 10q24 lysyl oxidase-like 4 15457 rs1983864 LOXL4 84171 10 100007443 NM_032211 NP_115587 A/C D405A minus 24093087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 10q24 lysyl oxidase-like 4 15458 rs1984564 C3F 10162 12 6960454 NM_005768 NP_005759 C/T I217T minus 113094 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq,cluster" 12p13 putative protein similar to nessy (Drosophila) 15459 rs1984564 C3F 10162 12 6960454 NM_005768 NP_005759 C/T I217T minus 2890174 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 76 0.09 123 "by doubleHit,submitter,freq,cluster" 12p13 putative protein similar to nessy (Drosophila) 15460 rs1984564 C3F 10162 12 6960454 NM_005768 NP_005759 C/T I217T minus 23783579 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 12p13 putative protein similar to nessy (Drosophila) 15461 rs1984564 C3F 10162 12 6960454 NM_005768 NP_005759 C/T I217T minus 23783579 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 12p13 putative protein similar to nessy (Drosophila) 15462 rs1984564 C3F 10162 12 6960454 NM_005768 NP_005759 C/T I217T minus 23783579 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 12p13 putative protein similar to nessy (Drosophila) 15463 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15464 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15465 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 902 AFFY Caucasian 20 0.2 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15466 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 903 AFFY Asian 12 0.08 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15467 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 904 AFFY CEPH 12 0.33 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15468 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 905 AFFY PDpanel 44 0.23 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15469 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 2901988 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15470 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 24450977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15471 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 24450977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15472 rs1990236 DNAH9 1770 17 11806187 NM_001372 NP_001363 A/G M4374I plus 24450977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15473 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15474 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15475 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 902 AFFY Caucasian 20 0.2 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15476 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 903 AFFY Asian 12 0.08 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15477 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 904 AFFY CEPH 12 0.33 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15478 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 905 AFFY PDpanel 44 0.23 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15479 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 2901988 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15480 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 24450977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15481 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 24450977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15482 rs1990236 DNAH9 1770 17 11806187 NM_004662 NP_004653 A/G M686I plus 24450977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 15483 rs1990313 AKAP3 10566 12 4606347 NM_006422 NP_006413 C/T I661T minus 2902084 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,submitter,freq" 12p13.3 A kinase (PRKA) anchor protein 3 15484 rs1990313 AKAP3 10566 12 4606347 NM_006422 NP_006413 C/T I661T minus 2902084 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,submitter,freq" 12p13.3 A kinase (PRKA) anchor protein 3 15485 rs1990313 AKAP3 10566 12 4606347 NM_006422 NP_006413 C/T I661T minus 24205226 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.08 123 "HapMap,submitter,freq" 12p13.3 A kinase (PRKA) anchor protein 3 15486 rs1990313 AKAP3 10566 12 4606347 NM_006422 NP_006413 C/T I661T minus 24205226 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "HapMap,submitter,freq" 12p13.3 A kinase (PRKA) anchor protein 3 15487 rs1990313 AKAP3 10566 12 4606347 NM_006422 NP_006413 C/T I661T minus 24205226 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.47 123 "HapMap,submitter,freq" 12p13.3 A kinase (PRKA) anchor protein 3 15488 rs1990760 IFIH1 64135 2 162949558 NM_022168 NP_071451 C/T A946T plus 2902594 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,submitter,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 15489 rs1990760 IFIH1 64135 2 162949558 NM_022168 NP_071451 C/T A946T plus 2902594 1303 SEQUENOM CEPH CEPH (92) 92 0.37 121 "HapMap,doubleHit,submitter,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 15490 rs1990760 IFIH1 64135 2 162949558 NM_022168 NP_071451 C/T A946T plus 4947688 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.22 121 "HapMap,doubleHit,submitter,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 15491 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 2903573 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15492 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 2903573 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15493 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 3172741 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.08 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15494 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 24104812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15495 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 24104812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15496 rs1991517 TSHR 7253 14 80680336 NM_000369 NP_000360 C/G E727D plus 24104812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 14q31 thyroid stimulating hormone receptor 15497 rs1995641 TGM4 7047 3 44918393 NM_003241 NP_003232 A/G E313K plus 3234748 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 116 "HapMap,doubleHit,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 15498 rs1995641 TGM4 7047 3 44918393 NM_003241 NP_003232 A/G E313K plus 10036569 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.47 116 "HapMap,doubleHit,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 15499 rs1995641 TGM4 7047 3 44918393 NM_003241 NP_003232 A/G E313K plus 10036569 1303 SEQUENOM CEPH CEPH (92) 92 0.32 116 "HapMap,doubleHit,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 15500 rs1997660 PGBD1 84547 6 28377642 NM_032507 NP_115896 C/T I678V minus 23916072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 15501 rs1997660 PGBD1 84547 6 28377642 NM_032507 NP_115896 C/T I678V minus 23916072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 15502 rs1997660 PGBD1 84547 6 28377642 NM_032507 NP_115896 C/T I678V minus 23916072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 15503 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 12675615 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 186 0.16 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15504 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 12675615 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.09 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15505 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 12675615 776 SNP500CANCER AFR1 African / African-American (24) 40 0.23 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15506 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 12675615 777 SNP500CANCER HISP1 Hispanic (23) 42 0.14 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15507 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 12675615 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.2 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15508 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 23338423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15509 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 23338423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15510 rs1998206 ROS1 6098 6 117832141 NM_002944 NP_002935 A/C T145P minus 23338423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6q22 v-ros UR2 sarcoma virus oncogene homolog 1 (avian) 15511 rs1998972 MAMDC2 256691 9 69970866 NM_153267 NP_694999 A/G S294N plus 2912848 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 1 123 "by submitter,freq,cluster" 9q21.13-q21.2 MAM domain containing 2 15512 rs1998972 MAMDC2 256691 9 69970866 NM_153267 NP_694999 A/G S294N plus 2912848 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.11 123 "by submitter,freq,cluster" 9q21.13-q21.2 MAM domain containing 2 15513 rs1998972 MAMDC2 256691 9 69970866 NM_153267 NP_694999 A/G S294N plus 23588351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 9q21.13-q21.2 MAM domain containing 2 15514 rs1998972 MAMDC2 256691 9 69970866 NM_153267 NP_694999 A/G S294N plus 23588351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by submitter,freq,cluster" 9q21.13-q21.2 MAM domain containing 2 15515 rs1998972 MAMDC2 256691 9 69970866 NM_153267 NP_694999 A/G S294N plus 23588351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 9q21.13-q21.2 MAM domain containing 2 15516 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 758 TSC-CSHL CEL_AFRICAN_AMERICAN CELERA African-American (30) 60 0.48 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15517 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 759 TSC-CSHL CEL_ASIAN CELERA Asians (30) 56 0.3 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15518 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 760 TSC-CSHL CEL_CAUCASIAN CELERA Caucasians (30) 60 0.45 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15519 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 761 TSC-CSHL CEL_CAUCASIAN_CEPH CELERA CEPH Caucasians (661) 186 0.49 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15520 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 901 AFFY AfAm 12 0.33 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15521 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 902 AFFY Caucasian 12 0.5 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15522 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 903 AFFY Asian 12 0.42 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15523 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 904 AFFY CEPH 10 0.4 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15524 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 905 AFFY PDpanel 48 0.44 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15525 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 2913174 1303 SEQUENOM CEPH CEPH (92) 92 0.4 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15526 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 4926233 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.28 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15527 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 24688626 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15528 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 24688626 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15529 rs1999240 MYO3A 53904 10 26503136 NM_017433 NP_059129 A/C R1313S plus 24688626 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 10p11.1 myosin IIIA 15530 rs1999272 PARG1 9411 1 94351468 NM_004815 NP_004806 C/T G1255D plus 2913217 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,submitter,freq,cluster" 1p22.1 PTPL1-associated RhoGAP 1 15531 rs1999272 PARG1 9411 1 94351468 NM_004815 NP_004806 C/T G1255D plus 23156256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 1p22.1 PTPL1-associated RhoGAP 1 15532 rs1999272 PARG1 9411 1 94351468 NM_004815 NP_004806 C/T G1255D plus 23156256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 1p22.1 PTPL1-associated RhoGAP 1 15533 rs1999272 PARG1 9411 1 94351468 NM_004815 NP_004806 C/T G1255D plus 23156256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 1p22.1 PTPL1-associated RhoGAP 1 15534 rs2000390 OR5BU1 401994 1 245171138 XM_377645 XP_377645 A/G S170N minus 23161764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q44 "olfactory receptor, family 5, subfamily BU, member 1" 15535 rs2000390 OR5BU1 401994 1 245171138 XM_377645 XP_377645 A/G S170N minus 23161764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 1q44 "olfactory receptor, family 5, subfamily BU, member 1" 15536 rs2000390 OR5BU1 401994 1 245171138 XM_377645 XP_377645 A/G S170N minus 23161764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 1q44 "olfactory receptor, family 5, subfamily BU, member 1" 15537 rs2000813 LIPG 9388 18 45347862 NM_006033 NP_006024 C/T T111I plus 2915222 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by cluster,freq" 18q21.1 "lipase, endothelial" 15538 rs2000813 LIPG 9388 18 45347862 NM_006033 NP_006024 C/T T111I plus 24068059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by cluster,freq" 18q21.1 "lipase, endothelial" 15539 rs2000813 LIPG 9388 18 45347862 NM_006033 NP_006024 C/T T111I plus 24068059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "by cluster,freq" 18q21.1 "lipase, endothelial" 15540 rs2000813 LIPG 9388 18 45347862 NM_006033 NP_006024 C/T T111I plus 24068059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 "by cluster,freq" 18q21.1 "lipase, endothelial" 15541 rs2001301 LRRFIP1 9208 2 238453609 NM_004735 NP_004726 C/T N394S minus 2915846 1303 SEQUENOM CEPH CEPH (92) 92 0.22 119 "by doubleHit,cluster" 2q37.3 leucine rich repeat (in FLII) interacting protein 1 15542 rs2001490 CML2 51471 2 73839753 NM_016347 NP_057431 C/G G112A plus 2916040 1303 SEQUENOM CEPH CEPH (92) 92 0.47 121 "by doubleHit,submitter" 2p13.1 putative N-acetyltransferase Camello 2 15543 rs2003783 KLK3 354 19 56053284 NM_001648 NP_001639 G/T L132I minus 2918710 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 15544 rs2003783 KLK3 354 19 56053284 NM_001648 NP_001639 G/T L132I minus 3205779 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.08 123 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 15545 rs2003783 KLK3 354 19 56053284 NM_001648 NP_001639 G/T L132I minus 23623364 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.08 123 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 15546 rs2003783 KLK3 354 19 56053284 NM_001648 NP_001639 G/T L132I minus 23623364 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 15547 rs2003783 KLK3 354 19 56053284 NM_001648 NP_001639 G/T L132I minus 23623364 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 19q13.41 "kallikrein 3, (prostate specific antigen)" 15548 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15549 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15550 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15551 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.14 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15552 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.09 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15553 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15554 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 2921332 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15555 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 3253092 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15556 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 24225656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15557 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 24225656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15558 rs2005199 SIGLEC6 946 19 56725018 NM_001245 NP_001236 A/G L262F plus 24225656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15559 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15560 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15561 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15562 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.14 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15563 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.09 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15564 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15565 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 2921332 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15566 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 3253092 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15567 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 24225656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15568 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 24225656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15569 rs2005199 SIGLEC6 946 19 56725018 NM_198845 NP_942142 A/G L246F plus 24225656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15570 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15571 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15572 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15573 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.14 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15574 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.09 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15575 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15576 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 2921332 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15577 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 3253092 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15578 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 24225656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15579 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 24225656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15580 rs2005199 SIGLEC6 946 19 56725018 NM_198846 NP_942143 A/G L262F plus 24225656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 6 15581 rs2005557 BSN 8927 3 49676302 NM_003458 NP_003449 A/G A3863T plus 2922257 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 121 "HapMap,doubleHit,freq,cluster" 3p21.31 bassoon (presynaptic cytomatrix protein) 15582 rs2005557 BSN 8927 3 49676302 NM_003458 NP_003449 A/G A3863T plus 2922257 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,doubleHit,freq,cluster" 3p21.31 bassoon (presynaptic cytomatrix protein) 15583 rs2005771 PASK 23178 2 241786146 NM_015148 NP_055963 C/T G725D plus 2922697 1303 SEQUENOM CEPH CEPH (92) 92 0.02 98 "by cluster,freq" 2q37.3 PAS domain containing serine/threonine kinase 15584 rs2005771 PASK 23178 2 241786146 NM_015148 NP_055963 C/T G725D plus 3196218 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.18 98 "by cluster,freq" 2q37.3 PAS domain containing serine/threonine kinase 15585 rs2006846 P2RXL1 9127 22 19694130 NM_005446 NP_005437 G/T V28G plus 2855759 1303 SEQUENOM CEPH CEPH (92) 92 0.11 92 by freq 22q11.21 "purinergic receptor P2X-like 1, orphan receptor" 15586 rs2010519 SLC39A13 91252 11 47388304 NM_152264 NP_689477 A/G E28G plus 2856686 1303 SEQUENOM CEPH CEPH (92) 92 0.09 123 by freq 11p11.2 "solute carrier family 39 (zinc transporter), member 13" 15587 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 2856299 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15588 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 2856299 1303 SEQUENOM CEPH CEPH (92) 92 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15589 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 4972618 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15590 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 23502631 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15591 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 23502631 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15592 rs2010834 TCEB3B 51224 18 42814873 NM_016427 NP_057511 G/T C254F minus 23502631 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.1 transcription elongation factor B polypeptide 3B (elongin A2) 15593 rs2010875 pp9099 80301 15 62944535 NM_025201 NP_079477 A/G P290S minus 2862295 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.13 123 "by doubleHit,submitter,freq,cluster" 15q22.1 PH domain-containing protein 15594 rs2010875 pp9099 80301 15 62944535 NM_025201 NP_079477 A/G P290S minus 2862295 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.11 123 "by doubleHit,submitter,freq,cluster" 15q22.1 PH domain-containing protein 15595 rs2010875 pp9099 80301 15 62944535 NM_025201 NP_079477 A/G P290S minus 24055120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 15q22.1 PH domain-containing protein 15596 rs2010875 pp9099 80301 15 62944535 NM_025201 NP_079477 A/G P290S minus 24055120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 15q22.1 PH domain-containing protein 15597 rs2010875 pp9099 80301 15 62944535 NM_025201 NP_079477 A/G P290S minus 24055120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 15q22.1 PH domain-containing protein 15598 rs2011331 FLG 2312 1 149094209 XM_048104 XP_048104 C/T A2076T plus 2889901 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 119 by doubleHit 1q21 filaggrin 15599 rs2011331 FLG 2312 1 149094209 XM_048104 XP_048104 C/T A2076T plus 4372611 1303 SEQUENOM CEPH CEPH (92) 92 1 119 by doubleHit 1q21 filaggrin 15600 rs2011951 CGI-69 51629 17 39753578 NM_016016 NP_057100 A/G F239L plus 2894424 1303 SEQUENOM CEPH CEPH (92) 92 0.39 120 "by doubleHit,freq,cluster" 17q12 CGI-69 protein 15601 rs2012199 IRTA2 83416 1 154322098 NM_031281 NP_112571 C/T G418D plus 23160729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 15602 rs2012199 IRTA2 83416 1 154322098 NM_031281 NP_112571 C/T G418D plus 23160729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 15603 rs2012199 IRTA2 83416 1 154322098 NM_031281 NP_112571 C/T G418D plus 23160729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 15604 rs2012736 UGT1A5 54579 2 234404379 NM_019078 NP_061951 G/T L248I minus 2919827 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 92 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 15605 rs2013335 K5B 196374 12 51528707 NM_173352 NP_775487 A/G L92P plus 2862319 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 5b 15606 rs2013335 K5B 196374 12 51528707 NM_173352 NP_775487 A/G L92P plus 23958498 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 5b 15607 rs2013335 K5B 196374 12 51528707 NM_173352 NP_775487 A/G L92P plus 23958498 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 5b 15608 rs2013335 K5B 196374 12 51528707 NM_173352 NP_775487 A/G L92P plus 23958498 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 keratin 5b 15609 rs2014055 MRC2 9902 17 58095649 NM_006039 NP_006030 C/T V43I minus 2858471 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 15610 rs2014055 MRC2 9902 17 58095649 NM_006039 NP_006030 C/T V43I minus 24569784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 15611 rs2014055 MRC2 9902 17 58095649 NM_006039 NP_006030 C/T V43I minus 24569784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 15612 rs2014055 MRC2 9902 17 58095649 NM_006039 NP_006030 C/T V43I minus 24569784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 15613 rs2014377 SIX5 147912 19 50961153 NM_175875 NP_787071 C/G L556V minus 2923565 1303 SEQUENOM CEPH CEPH (92) 92 0.15 121 "by doubleHit,cluster" 19q13.32 sine oculis homeobox homolog 5 (Drosophila) 15614 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 2893032 3 KWOK C USA Caucasian (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15615 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 2893032 5 KWOK B USA African-American (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15616 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 2893032 7 KWOK A Chinese (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15617 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 2893032 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15618 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 24536456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15619 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 24536456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15620 rs2014410 HPS4 89781 22 25184823 NM_022081 NP_071364 C/G L443V plus 24536456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15621 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 2893032 3 KWOK C USA Caucasian (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15622 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 2893032 5 KWOK B USA African-American (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15623 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 2893032 7 KWOK A Chinese (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15624 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 2893032 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15625 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 24536456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15626 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 24536456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15627 rs2014410 HPS4 89781 22 25184823 NM_152841 NP_690054 C/G L438V plus 24536456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15628 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 2893032 3 KWOK C USA Caucasian (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15629 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 2893032 5 KWOK B USA African-American (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15630 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 2893032 7 KWOK A Chinese (30) 84 1 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15631 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 2893032 1303 SEQUENOM CEPH CEPH (92) 92 0.38 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15632 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 24536456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15633 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 24536456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15634 rs2014410 HPS4 89781 22 25184823 NM_152843 NP_690056 C/G L461V plus 24536456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 15635 rs2014576 SIX5 147912 19 50960916 NM_175875 NP_787071 C/T P635S minus 2918742 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,freq,cluster" 19q13.32 sine oculis homeobox homolog 5 (Drosophila) 15636 rs2014576 SIX5 147912 19 50960916 NM_175875 NP_787071 C/T P635S minus 2985186 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.3 120 "HapMap,doubleHit,freq,cluster" 19q13.32 sine oculis homeobox homolog 5 (Drosophila) 15637 rs2015018 CSS3 337876 5 129549025 XM_373440 XP_373440 C/T D764G minus 118792 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,submitter,freq" 5q31.1 chondroitin sulfate synthase 3 15638 rs2015018 CSS3 337876 5 129549025 XM_373440 XP_373440 C/T D764G minus 24192872 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq" 5q31.1 chondroitin sulfate synthase 3 15639 rs2015018 CSS3 337876 5 129549025 XM_373440 XP_373440 C/T D764G minus 24192872 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq" 5q31.1 chondroitin sulfate synthase 3 15640 rs2015018 CSS3 337876 5 129549025 XM_373440 XP_373440 C/T D764G minus 24192872 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq" 5q31.1 chondroitin sulfate synthase 3 15641 rs2015352 CLCNKB 1188 1 16116373 NM_000085 NP_000076 G/T R27L plus 3242289 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.26 121 "by doubleHit,freq,cluster" 1p36 chloride channel Kb 15642 rs2016123 RAPGEF3 10411 12 46431192 NM_006105 NP_006096 C/T R151G plus 2895496 885 TSC-CSHL HapMap-CEPH-30-trios 102 1 121 "HapMap,doubleHit,cluster" 12q13.1 Rap guanine nucleotide exchange factor (GEF) 3 15643 rs2016123 RAPGEF3 10411 12 46431192 NM_006105 NP_006096 C/T R151G plus 2895496 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "HapMap,doubleHit,cluster" 12q13.1 Rap guanine nucleotide exchange factor (GEF) 3 15644 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 2864021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15645 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 2864021 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15646 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 4924849 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15647 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 16338450 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 16 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15648 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 24642282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15649 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 24642282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15650 rs2017116 ALMS1 7840 2 73628758 NM_015120 NP_055935 C/G D2672H minus 24642282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 2p13 Alstrom syndrome 1 15651 rs2017252 ZNF273 10793 7 63833239 NM_021148 NP_066971 A/C E396D plus 2901225 1303 SEQUENOM CEPH CEPH (92) 92 0.4 108 by doubleHit 7q11.21 zinc finger protein 273 15652 rs2018795 PHACS 84680 11 44051626 NM_032592 NP_115981 C/G D134E plus 23643023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 15653 rs2018795 PHACS 84680 11 44051626 NM_032592 NP_115981 C/G D134E plus 23643023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 15654 rs2018795 PHACS 84680 11 44051626 NM_032592 NP_115981 C/G D134E plus 23643023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 15655 rs2019552 DPEP1 1800 16 88231866 NM_004413 NP_004404 C/G E351Q plus 2984462 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.32 123 "by doubleHit,freq,cluster" 16q24.3 dipeptidase 1 (renal) 15656 rs2019552 DPEP1 1800 16 88231866 NM_004413 NP_004404 C/G E351Q plus 24205571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "by doubleHit,freq,cluster" 16q24.3 dipeptidase 1 (renal) 15657 rs2019552 DPEP1 1800 16 88231866 NM_004413 NP_004404 C/G E351Q plus 24205571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.11 123 "by doubleHit,freq,cluster" 16q24.3 dipeptidase 1 (renal) 15658 rs2019552 DPEP1 1800 16 88231866 NM_004413 NP_004404 C/G E351Q plus 24205571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.42 123 "by doubleHit,freq,cluster" 16q24.3 dipeptidase 1 (renal) 15659 rs2020050 RLN2 6019 9 5294547 NM_005059 NP_005050 A/C V12F plus 2859236 1303 SEQUENOM CEPH CEPH (92) 92 0.13 92 by freq 9p24.1 relaxin 2 (H2) 15660 rs2020050 RLN2 6019 9 5294547 NM_134441 NP_604390 A/C V12F plus 2859236 1303 SEQUENOM CEPH CEPH (92) 92 0.13 92 by freq 9p24.1 relaxin 2 (H2) 15661 rs2020221 KRTAP10-5 386680 21 44824826 NM_198694 NP_941967 C/T D20N plus 4019398 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.28 119 "by doubleHit,submitter,freq,cluster" 21q22.3 keratin associated protein 18-5 15662 rs2020390 APOBEC3F 200316 22 37765596 NM_145298 NP_660341 G/T A108S plus 7998154 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 15663 rs2020860 FMO2 2327 1 167894241 NM_001460 NP_001451 C/T F81S plus 2923964 506 NCBI NIHPDR NIHPDR 88 0.1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15664 rs2020860 FMO2 2327 1 167894241 NM_001460 NP_001451 C/T F81S plus 23198563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15665 rs2020860 FMO2 2327 1 167894241 NM_001460 NP_001451 C/T F81S plus 23198563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15666 rs2020860 FMO2 2327 1 167894241 NM_001460 NP_001451 C/T F81S plus 23198563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15667 rs2020862 FMO2 2327 1 167900242 NM_001460 NP_001451 C/T S195L plus 2923966 506 NCBI NIHPDR NIHPDR 78 0.46 120 "by doubleHit,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 15668 rs2020862 FMO2 2327 1 167900242 NM_001460 NP_001451 C/T S195L plus 17370764 1303 SEQUENOM CEPH CEPH (92) 92 0.14 120 "by doubleHit,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 15669 rs2020863 FMO2 2327 1 167906189 NM_001460 NP_001451 A/G E314G plus 2923967 506 NCBI NIHPDR NIHPDR 84 0.14 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15670 rs2020863 FMO2 2327 1 167906189 NM_001460 NP_001451 A/G E314G plus 2923967 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15671 rs2020863 FMO2 2327 1 167906189 NM_001460 NP_001451 A/G E314G plus 23865512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15672 rs2020863 FMO2 2327 1 167906189 NM_001460 NP_001451 A/G E314G plus 23865512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15673 rs2020863 FMO2 2327 1 167906189 NM_001460 NP_001451 A/G E314G plus 23865512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15674 rs2020865 FMO2 2327 1 167908570 NM_001460 NP_001451 G/T N413K plus 2923969 506 NCBI NIHPDR NIHPDR 88 0.11 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15675 rs2020865 FMO2 2327 1 167908570 NM_001460 NP_001451 G/T N413K plus 23198792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15676 rs2020865 FMO2 2327 1 167908570 NM_001460 NP_001451 G/T N413K plus 23198792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15677 rs2020865 FMO2 2327 1 167908570 NM_001460 NP_001451 G/T N413K plus 23198792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15678 rs2020866 FMO2 2327 1 167904779 NM_001460 NP_001451 C/T R249X plus 2923970 506 NCBI NIHPDR NIHPDR 86 0.01 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15679 rs2020866 FMO2 2327 1 167904779 NM_001460 NP_001451 C/T R249X plus 23198704 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15680 rs2020866 FMO2 2327 1 167904779 NM_001460 NP_001451 C/T R249X plus 23198704 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15681 rs2020866 FMO2 2327 1 167904779 NM_001460 NP_001451 C/T R249X plus 23198704 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 15682 rs2020870 FMO2 2327 1 167886617 NM_001460 NP_001451 A/G D36G plus 2923974 506 NCBI NIHPDR NIHPDR 84 0.06 116 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 15683 rs2020870 FMO2 2327 1 167886617 NM_001460 NP_001451 A/G D36G plus 9901144 1303 SEQUENOM CEPH CEPH (92) 92 0.08 116 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 15684 rs2020872 MLH1 4292 3 37010136 NM_000249 NP_000240 A/G I32V plus 2923976 506 NCBI NIHPDR NIHPDR 82 0.02 111 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15685 rs2020872 MLH1 4292 3 37010136 NM_000249 NP_000240 A/G I32V plus 6312911 693 EGP_SNPS PDR90 NIHPDR 156 0.01 111 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15686 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 2923977 506 NCBI NIHPDR NIHPDR 88 0.03 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15687 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 2923977 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15688 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 2923977 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15689 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 2923977 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15690 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 14212293 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15691 rs2020873 MLH1 4292 3 37067029 NM_000249 NP_000240 C/T H718Y plus 14212293 1303 SEQUENOM CEPH CEPH (92) 92 1 119 "HapMap,freq,cluster" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 15692 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 2923978 506 NCBI NIHPDR NIHPDR 80 0.18 123 "by cluster,freq" 11q22-q23 progesterone receptor 15693 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 12675581 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 1 123 "by cluster,freq" 11q22-q23 progesterone receptor 15694 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 12675581 775 SNP500CANCER CAUC1 Caucasian (31) 54 1 123 "by cluster,freq" 11q22-q23 progesterone receptor 15695 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 12675581 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 11q22-q23 progesterone receptor 15696 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 12675581 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 11q22-q23 progesterone receptor 15697 rs2020874 PGR 5241 11 100467733 NM_000926 NP_000917 G/T R625I minus 12675581 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 11q22-q23 progesterone receptor 15698 rs2020880 PGR 5241 11 100417938 NM_000926 NP_000917 C/T S865L minus 2923987 506 NCBI NIHPDR NIHPDR 88 0.01 120 "by cluster,freq" 11q22-q23 progesterone receptor 15699 rs2020880 PGR 5241 11 100417938 NM_000926 NP_000917 C/T S865L minus 16343523 693 EGP_SNPS PDR90 NIHPDR 180 0.01 120 "by cluster,freq" 11q22-q23 progesterone receptor 15700 rs2020880 PGR 5241 11 100417938 NM_000926 NP_000917 C/T S865L minus 16343523 1303 SEQUENOM CEPH CEPH (92) 92 0.22 120 "by cluster,freq" 11q22-q23 progesterone receptor 15701 rs2020893 MGMT 4255 10 131224594 NM_002412 NP_002403 A/G E30K plus 3256189 506 NCBI NIHPDR NIHPDR 844 0.01 100 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 15702 rs2020893 MGMT 4255 10 131224594 NM_002412 NP_002403 A/G E30K plus 3256189 1303 SEQUENOM CEPH CEPH (92) 92 0.42 100 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 15703 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 2924007 506 NCBI NIHPDR NIHPDR 712 0 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15704 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 6310821 693 EGP_SNPS PDR90 NIHPDR 180 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15705 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 12675305 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15706 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 12675305 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15707 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 12675305 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15708 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 12675305 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15709 rs2020897 CASP9 842 1 15589987 NM_001229 NP_001220 C/G E114D minus 12675305 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15710 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 2924007 506 NCBI NIHPDR NIHPDR 712 0 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15711 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 6310821 693 EGP_SNPS PDR90 NIHPDR 180 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15712 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 12675305 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15713 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 12675305 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15714 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 12675305 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15715 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 12675305 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15716 rs2020897 CASP9 842 1 15589987 NM_032996 NP_127463 C/G E114D minus 12675305 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 15717 rs2020908 MSH6 2956 2 47937959 NM_000179 NP_000170 C/G L396V plus 2924019 506 NCBI NIHPDR NIHPDR 88 0.01 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15718 rs2020908 MSH6 2956 2 47937959 NM_000179 NP_000170 C/G L396V plus 4384594 693 EGP_SNPS PDR90 NIHPDR 180 0.01 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15719 rs2020908 MSH6 2956 2 47937959 NM_000179 NP_000170 C/G L396V plus 4384594 1303 SEQUENOM CEPH CEPH (92) 92 1 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15720 rs2020914 MSH6 2956 2 47939429 NM_000179 NP_000170 A/G I886V plus 2924027 506 NCBI NIHPDR NIHPDR 80 0.01 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15721 rs2020914 MSH6 2956 2 47939429 NM_000179 NP_000170 A/G I886V plus 4384598 693 EGP_SNPS PDR90 NIHPDR 168 0.01 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15722 rs2020914 MSH6 2956 2 47939429 NM_000179 NP_000170 A/G I886V plus 4384598 1303 SEQUENOM CEPH CEPH (92) 92 1 103 "by cluster,freq" 2p16 mutS homolog 6 (E. coli) 15723 rs2020916 GSR 2936 8 30666320 NM_000637 NP_000628 A/C P271H minus 2924031 506 NCBI NIHPDR NIHPDR 80 0.33 98 "HapMap,freq,cluster" 8p21.1 glutathione reductase 15724 rs2020916 GSR 2936 8 30666320 NM_000637 NP_000628 A/C P271H minus 2924031 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 98 "HapMap,freq,cluster" 8p21.1 glutathione reductase 15725 rs2020916 GSR 2936 8 30666320 NM_000637 NP_000628 A/C P271H minus 2924031 1303 SEQUENOM CEPH CEPH (92) 92 1 98 "HapMap,freq,cluster" 8p21.1 glutathione reductase 15726 rs2020921 PLAT 5327 8 42164122 NM_000930 NP_000921 C/T R164W minus 2924036 578 CERL CERL_POP1 Swedish 102 0.04 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15727 rs2020921 PLAT 5327 8 42164122 NM_000930 NP_000921 C/T R164W minus 9807077 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.05 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15728 rs2020921 PLAT 5327 8 42164122 NM_000930 NP_000921 C/T R164W minus 9807077 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15729 rs2020921 PLAT 5327 8 42164122 NM_000930 NP_000921 C/T R164W minus 9807077 1303 SEQUENOM CEPH CEPH (92) 92 0.02 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15730 rs2020921 PLAT 5327 8 42164122 NM_000931 NP_000922 C/T R164W minus 2924036 578 CERL CERL_POP1 Swedish 102 0.04 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15731 rs2020921 PLAT 5327 8 42164122 NM_000931 NP_000922 C/T R164W minus 9807077 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.05 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15732 rs2020921 PLAT 5327 8 42164122 NM_000931 NP_000922 C/T R164W minus 9807077 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15733 rs2020921 PLAT 5327 8 42164122 NM_000931 NP_000922 C/T R164W minus 9807077 1303 SEQUENOM CEPH CEPH (92) 92 0.02 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15734 rs2020921 PLAT 5327 8 42164122 NM_033011 NP_127509 C/T R118W minus 2924036 578 CERL CERL_POP1 Swedish 102 0.04 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15735 rs2020921 PLAT 5327 8 42164122 NM_033011 NP_127509 C/T R118W minus 9807077 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.05 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15736 rs2020921 PLAT 5327 8 42164122 NM_033011 NP_127509 C/T R118W minus 9807077 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15737 rs2020921 PLAT 5327 8 42164122 NM_033011 NP_127509 C/T R118W minus 9807077 1303 SEQUENOM CEPH CEPH (92) 92 0.02 117 "HapMap,freq,cluster" 8p12 "plasminogen activator, tissue" 15738 rs2020924 PLAT 5327 8 42155734 NM_000931 NP_000922 C/T L285P minus 9807084 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.14 123 "by doubleHit,freq,cluster" 8p12 "plasminogen activator, tissue" 15739 rs2020924 PLAT 5327 8 42155734 NM_000931 NP_000922 C/T L285P minus 24028471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p12 "plasminogen activator, tissue" 15740 rs2020924 PLAT 5327 8 42155734 NM_000931 NP_000922 C/T L285P minus 24028471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 8p12 "plasminogen activator, tissue" 15741 rs2020924 PLAT 5327 8 42155734 NM_000931 NP_000922 C/T L285P minus 24028471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 8p12 "plasminogen activator, tissue" 15742 rs2020945 PWP2H 5822 21 44353347 NM_005049 NP_005040 A/G D25N plus 2924064 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.32 121 "HapMap,doubleHit,freq,cluster" 21q22.3 PWP2 periodic tryptophan protein homolog (yeast) 15743 rs2020945 PWP2H 5822 21 44353347 NM_005049 NP_005040 A/G D25N plus 4035613 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 121 "HapMap,doubleHit,freq,cluster" 21q22.3 PWP2 periodic tryptophan protein homolog (yeast) 15744 rs2020945 PWP2H 5822 21 44353347 NM_005049 NP_005040 A/G D25N plus 4035613 1303 SEQUENOM CEPH CEPH (92) 92 0.14 121 "HapMap,doubleHit,freq,cluster" 21q22.3 PWP2 periodic tryptophan protein homolog (yeast) 15745 rs2020955 ERCC4 2072 16 13946160 NM_005236 NP_005227 C/T S662P plus 2924078 506 NCBI NIHPDR NIHPDR 82 0.04 103 "HapMap,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15746 rs2020955 ERCC4 2072 16 13946160 NM_005236 NP_005227 C/T S662P plus 4384450 693 EGP_SNPS PDR90 NIHPDR 176 0.06 103 "HapMap,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15747 rs2020955 ERCC4 2072 16 13946160 NM_005236 NP_005227 C/T S662P plus 4384450 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 103 "HapMap,freq,cluster" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15748 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 2924080 506 NCBI NIHPDR NIHPDR 88 0.02 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15749 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 4384474 693 EGP_SNPS PDR90 NIHPDR 166 0.01 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15750 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 5586515 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15751 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 5586515 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15752 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 5586515 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15753 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 5586515 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15754 rs2020957 ERCC4 2072 16 13949571 NM_005236 NP_005227 A/G I873V plus 5586515 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15755 rs2020959 ERCC4 2072 16 13949123 NM_005236 NP_005227 A/C C723X plus 2924082 506 NCBI NIHPDR NIHPDR 84 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15756 rs2020959 ERCC4 2072 16 13949123 NM_005236 NP_005227 A/C C723X plus 4384470 693 EGP_SNPS PDR90 NIHPDR 180 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15757 rs2020961 ERCC4 2072 16 13928033 NM_005236 NP_005227 C/T A168V plus 2924085 506 NCBI NIHPDR NIHPDR 88 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15758 rs2020961 ERCC4 2072 16 13928033 NM_005236 NP_005227 C/T A168V plus 4384327 693 EGP_SNPS PDR90 NIHPDR 174 0.01 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15759 rs2020961 ERCC4 2072 16 13928033 NM_005236 NP_005227 C/T A168V plus 4384327 1303 SEQUENOM CEPH CEPH (92) 92 1 103 "by cluster,freq" 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 15760 rs2023472 TRIM31 11074 6 30183843 NM_052816 NP_438111 C/T M261T minus 3195570 738 YUSUKE JBIC-ALLELE Japanese (752) 1262 0.3 123 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 15761 rs2023472 TRIM31 11074 6 30183843 NM_052816 NP_438111 C/T M261T minus 7878093 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 15762 rs2023472 TRIM31 11074 6 30183843 NM_052816 NP_438111 C/T M261T minus 23306617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 15763 rs2023472 TRIM31 11074 6 30183843 NM_052816 NP_438111 C/T M261T minus 23306617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 15764 rs2023472 TRIM31 11074 6 30183843 NM_052816 NP_438111 C/T M261T minus 23306617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 15765 rs2024301 CLECSF6 50856 12 8169448 NM_016184 NP_057268 A/T H36L minus 2932581 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15766 rs2024301 CLECSF6 50856 12 8169448 NM_016184 NP_057268 A/T H36L minus 4927865 738 YUSUKE JBIC-ALLELE Japanese (752) 932 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15767 rs2024301 CLECSF6 50856 12 8169448 NM_016184 NP_057268 A/T H36L minus 23784388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15768 rs2024301 CLECSF6 50856 12 8169448 NM_016184 NP_057268 A/T H36L minus 23784388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15769 rs2024301 CLECSF6 50856 12 8169448 NM_016184 NP_057268 A/T H36L minus 23784388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15770 rs2024301 CLECSF6 50856 12 8169448 NM_194450 NP_919432 A/T H36L minus 2932581 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15771 rs2024301 CLECSF6 50856 12 8169448 NM_194450 NP_919432 A/T H36L minus 4927865 738 YUSUKE JBIC-ALLELE Japanese (752) 932 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15772 rs2024301 CLECSF6 50856 12 8169448 NM_194450 NP_919432 A/T H36L minus 23784388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15773 rs2024301 CLECSF6 50856 12 8169448 NM_194450 NP_919432 A/T H36L minus 23784388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15774 rs2024301 CLECSF6 50856 12 8169448 NM_194450 NP_919432 A/T H36L minus 23784388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6" 15775 rs2024320 DPPA3 359787 12 7759114 NM_199286 NP_954980 C/G E51Q plus 2932601 885 TSC-CSHL HapMap-CEPH-30-trios 100 0.18 121 "HapMap,doubleHit,submitter,freq" 12p13.31 developmental pluripotency associated 3 15776 rs2027063 TCTE3 6991 6 169961860 NM_174910 NP_777570 A/C R88I plus 3210907 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 6q27 t-complex-associated-testis-expressed 3 15777 rs2027063 TCTE3 6991 6 169961860 NM_174910 NP_777570 A/C R88I plus 23676654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q27 t-complex-associated-testis-expressed 3 15778 rs2027063 TCTE3 6991 6 169961860 NM_174910 NP_777570 A/C R88I plus 23676654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 6q27 t-complex-associated-testis-expressed 3 15779 rs2027063 TCTE3 6991 6 169961860 NM_174910 NP_777570 A/C R88I plus 23676654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q27 t-complex-associated-testis-expressed 3 15780 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15781 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15782 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 902 AFFY Caucasian 22 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15783 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 903 AFFY Asian 12 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15784 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 904 AFFY CEPH 8 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15785 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 905 AFFY PDpanel 42 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15786 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 2939018 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15787 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 24264820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15788 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 24264820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15789 rs2030259 JMJD1A 55818 2 86595300 NM_018433 NP_060903 C/T I212V minus 24264820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2p11.2 jumonji domain containing 1A 15790 rs2031640 SACS 26278 13 22828055 NM_014363 NP_055178 A/T N85K plus 24435690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq" 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 15791 rs2031640 SACS 26278 13 22828055 NM_014363 NP_055178 A/T N85K plus 24435690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 15792 rs2031640 SACS 26278 13 22828055 NM_014363 NP_055178 A/T N85K plus 24435690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by submitter,freq" 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 15793 rs2032567 LAMA4 3910 6 112564083 NM_002290 NP_002281 C/T G1110S plus 2941527 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by doubleHit,submitter,freq,cluster" 6q21 "laminin, alpha 4" 15794 rs2032567 LAMA4 3910 6 112564083 NM_002290 NP_002281 C/T G1110S plus 23392187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 6q21 "laminin, alpha 4" 15795 rs2032567 LAMA4 3910 6 112564083 NM_002290 NP_002281 C/T G1110S plus 23392187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "by doubleHit,submitter,freq,cluster" 6q21 "laminin, alpha 4" 15796 rs2032567 LAMA4 3910 6 112564083 NM_002290 NP_002281 C/T G1110S plus 23392187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 6q21 "laminin, alpha 4" 15797 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 2941706 3 KWOK C USA Caucasian (30) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15798 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 2941706 5 KWOK B USA African-American (30) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15799 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 2941706 7 KWOK A Chinese (30) 84 1 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15800 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 2941706 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15801 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 2941706 1303 SEQUENOM CEPH CEPH (92) 92 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15802 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 24187710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15803 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 24187710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15804 rs2032729 ZNF24 7572 18 31171642 NM_006965 NP_008896 A/G N220S minus 24187710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 18q12 zinc finger protein 24 (KOX 17) 15805 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 2941874 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.28 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15806 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 2941874 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.21 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15807 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 2941874 640 TSC-CSHL TSC_42_A TSC Asian (42) 73 0.13 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15808 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 3172722 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.08 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15809 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 16360857 649 FHCRC POPU1 USA (20) 36 0.1 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15810 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 24534707 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15811 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 24534707 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15812 rs2032887 CCL25 6370 19 8027360 NM_005624 NP_005615 A/G H101R plus 24534707 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 15813 rs2034310 NKIR 146722 17 70203523 NM_139018 NP_620587 C/T Q218R plus 2943391 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,doubleHit,freq,cluster" 17q25.2 NK inhibitory receptor precursor 15814 rs2034648 CENTG2 116987 2 236739822 NM_014914 NP_055729 C/T V618I minus 2943761 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by cluster,freq" 2p24.3-p24.1 "centaurin, gamma 2" 15815 rs2034648 CENTG2 116987 2 236739822 NM_014914 NP_055729 C/T V618I minus 24287874 1371 PERLEGEN AFD_EUR_PANEL European American (24) 19 0.5 123 "by cluster,freq" 2p24.3-p24.1 "centaurin, gamma 2" 15816 rs2034648 CENTG2 116987 2 236739822 NM_014914 NP_055729 C/T V618I minus 24287874 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 2p24.3-p24.1 "centaurin, gamma 2" 15817 rs2034648 CENTG2 116987 2 236739822 NM_014914 NP_055729 C/T V618I minus 24287874 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.33 123 "by cluster,freq" 2p24.3-p24.1 "centaurin, gamma 2" 15818 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 638 TSC-CSHL TSC_42_AA TSC African American (42) 70 1 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15819 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.04 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15820 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 640 TSC-CSHL TSC_42_A TSC Asian (42) 72 0.07 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15821 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.22 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15822 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.06 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15823 rs2034891 SIGLECL1 89858 19 56696559 NM_053003 NP_443729 G/T P81T plus 2944024 1303 SEQUENOM CEPH CEPH (92) 92 1 111 "by doubleHit,cluster" 19q13.4 SIGLEC-like 1 15824 rs2035970 EMR4 326342 19 6932763 XM_377506 XP_377506 C/T T127M minus 24074449 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 15825 rs2035970 EMR4 326342 19 6932763 XM_377506 XP_377506 C/T T127M minus 24074449 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 15826 rs2035970 EMR4 326342 19 6932763 XM_377506 XP_377506 C/T T127M minus 24074449 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "by cluster,freq" 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 4" 15827 rs2037814 ALMS1 7840 2 73587324 NM_015120 NP_055935 A/C V671G minus 16338486 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.12 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15828 rs2037814 ALMS1 7840 2 73587324 NM_015120 NP_055935 A/C V671G minus 24642254 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15829 rs2037814 ALMS1 7840 2 73587324 NM_015120 NP_055935 A/C V671G minus 24642254 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15830 rs2037814 ALMS1 7840 2 73587324 NM_015120 NP_055935 A/C V671G minus 24642254 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15831 rs2037912 PPL 5493 16 4873940 NM_002705 NP_002696 C/G Q1573E minus 2947265 1303 SEQUENOM CEPH CEPH (92) 92 0.39 121 by doubleHit 16p13.3 periplakin 15832 rs2039475 SYNE2 23224 14 63678509 NM_015180 NP_055995 A/G H5085Y minus 2948945 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15833 rs2039475 SYNE2 23224 14 63678509 NM_015180 NP_055995 A/G H5085Y minus 23793602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15834 rs2039475 SYNE2 23224 14 63678509 NM_015180 NP_055995 A/G H5085Y minus 23793602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15835 rs2039475 SYNE2 23224 14 63678509 NM_015180 NP_055995 A/G H5085Y minus 23793602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15836 rs2039475 SYNE2 23224 14 63678509 NM_182914 NP_878918 A/G H1471Y minus 2948945 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15837 rs2039475 SYNE2 23224 14 63678509 NM_182914 NP_878918 A/G H1471Y minus 23793602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15838 rs2039475 SYNE2 23224 14 63678509 NM_182914 NP_878918 A/G H1471Y minus 23793602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15839 rs2039475 SYNE2 23224 14 63678509 NM_182914 NP_878918 A/G H1471Y minus 23793602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 15840 rs2041049 ASK 10926 7 87181828 NM_006716 NP_006707 C/T H575R minus 2950673 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 111 "by doubleHit,submitter" 7q21.3 activator of S phase kinase 15841 rs2041049 ASK 10926 7 87181828 NM_006716 NP_006707 C/T H575R minus 2950673 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 111 "by doubleHit,submitter" 7q21.3 activator of S phase kinase 15842 rs2041049 ASK 10926 7 87181828 NM_006716 NP_006707 C/T H575R minus 2950673 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 111 "by doubleHit,submitter" 7q21.3 activator of S phase kinase 15843 rs2041049 ASK 10926 7 87181828 NM_006716 NP_006707 C/T H575R minus 2950673 1303 SEQUENOM CEPH CEPH (92) 92 1 111 "by doubleHit,submitter" 7q21.3 activator of S phase kinase 15844 rs2041385 TAPBPL 55080 12 6432554 NM_018009 NP_060479 C/T A42V plus 2951026 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "by submitter,freq,cluster" 12p13.31 TAP binding protein-like 15845 rs2041385 TAPBPL 55080 12 6432554 NM_018009 NP_060479 C/T A42V plus 16340831 693 EGP_SNPS PDR90 NIHPDR 178 0.18 123 "by submitter,freq,cluster" 12p13.31 TAP binding protein-like 15846 rs2041385 TAPBPL 55080 12 6432554 NM_018009 NP_060479 C/T A42V plus 24697326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq,cluster" 12p13.31 TAP binding protein-like 15847 rs2041385 TAPBPL 55080 12 6432554 NM_018009 NP_060479 C/T A42V plus 24697326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by submitter,freq,cluster" 12p13.31 TAP binding protein-like 15848 rs2041385 TAPBPL 55080 12 6432554 NM_018009 NP_060479 C/T A42V plus 24697326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by submitter,freq,cluster" 12p13.31 TAP binding protein-like 15849 rs2041387 TAPBPL 55080 12 6433084 NM_018009 NP_060479 C/T A169V plus 24207405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by doubleHit,submitter,freq,cluster" 12p13.31 TAP binding protein-like 15850 rs2041387 TAPBPL 55080 12 6433084 NM_018009 NP_060479 C/T A169V plus 24207405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 12p13.31 TAP binding protein-like 15851 rs2041387 TAPBPL 55080 12 6433084 NM_018009 NP_060479 C/T A169V plus 24207405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 "by doubleHit,submitter,freq,cluster" 12p13.31 TAP binding protein-like 15852 rs2042200 ZNF426 79088 19 9507898 NM_024106 NP_077011 A/G A4V plus 2951881 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 426 15853 rs2042200 ZNF426 79088 19 9507898 NM_024106 NP_077011 A/G A4V plus 23401325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 426 15854 rs2042200 ZNF426 79088 19 9507898 NM_024106 NP_077011 A/G A4V plus 23401325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 426 15855 rs2042200 ZNF426 79088 19 9507898 NM_024106 NP_077011 A/G A4V plus 23401325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 426 15856 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 2952971 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15857 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 2952971 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15858 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 3230170 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15859 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 24109677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15860 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 24109677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15861 rs2043211 CARD8 22900 19 53429518 NM_014959 NP_055774 A/T C10X plus 24109677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 "caspase recruitment domain family, member 8" 15862 rs2044502 ZFP29 54993 15 82965002 NM_181877 NP_870992 C/G S190T minus 2954383 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 116 "HapMap,doubleHit,freq,cluster" 15q25.2 zinc finger protein 29 15863 rs2045732 TDRD7 23424 9 97273961 NM_014290 NP_055105 C/T V150A plus 2955702 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 9q22.33 tudor domain containing 7 15864 rs2045732 TDRD7 23424 9 97273961 NM_014290 NP_055105 C/T V150A plus 3233025 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 123 "HapMap,doubleHit,freq,cluster" 9q22.33 tudor domain containing 7 15865 rs2045732 TDRD7 23424 9 97273961 NM_014290 NP_055105 C/T V150A plus 24539267 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 9q22.33 tudor domain containing 7 15866 rs2045732 TDRD7 23424 9 97273961 NM_014290 NP_055105 C/T V150A plus 24539267 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 9q22.33 tudor domain containing 7 15867 rs2045732 TDRD7 23424 9 97273961 NM_014290 NP_055105 C/T V150A plus 24539267 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 9q22.33 tudor domain containing 7 15868 rs2052937 GPR113 165082 2 26448345 NM_153835 NP_722577 C/T A404T plus 2963464 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,submitter,freq,cluster" 2p24.1 G protein-coupled receptor 113 15869 rs2053116 OR52R1 119695 11 4781454 XM_061627 XP_061627 G/T S245A minus 2963667 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.02 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 15870 rs2053116 OR52R1 119695 11 4781454 XM_061627 XP_061627 G/T S245A minus 2963667 782 TSC-CSHL WICGR6_CAUCASIAN_POOLED WICGR Caucasian (48) 96 0.24 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 15871 rs2053116 OR52R1 119695 11 4781454 XM_061627 XP_061627 G/T S245A minus 23548382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 15872 rs2053116 OR52R1 119695 11 4781454 XM_061627 XP_061627 G/T S245A minus 23548382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 15873 rs2053116 OR52R1 119695 11 4781454 XM_061627 XP_061627 G/T S245A minus 23548382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 15874 rs2056486 ALMS1 7840 2 73629222 NM_015120 NP_055935 A/C R2826S minus 16338490 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 70 0.41 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15875 rs2056486 ALMS1 7840 2 73629222 NM_015120 NP_055935 A/C R2826S minus 24642284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15876 rs2056486 ALMS1 7840 2 73629222 NM_015120 NP_055935 A/C R2826S minus 24642284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15877 rs2056486 ALMS1 7840 2 73629222 NM_015120 NP_055935 A/C R2826S minus 24642284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 15878 rs2057413 SETDB2 83852 13 48955098 NM_031915 NP_114121 A/G V473M plus 2968316 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 121 "HapMap,doubleHit,submitter,freq,cluster" 13q14 "SET domain, bifurcated 2" 15879 rs2057413 SETDB2 83852 13 48955098 NM_031915 NP_114121 A/G V473M plus 2968316 1303 SEQUENOM CEPH CEPH (92) 91 0.34 121 "HapMap,doubleHit,submitter,freq,cluster" 13q14 "SET domain, bifurcated 2" 15880 rs2058194 SCN4A 6329 17 59374080 NM_000334 NP_000325 C/T N1376D plus 2969150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 119 "HapMap,doubleHit,submitter,freq,cluster" 17q23-q25.3 "sodium channel, voltage-gated, type IV, alpha" 15881 rs2058194 SCN4A 6329 17 59374080 NM_000334 NP_000325 C/T N1376D plus 2969150 1303 SEQUENOM CEPH CEPH (92) 92 0.36 119 "HapMap,doubleHit,submitter,freq,cluster" 17q23-q25.3 "sodium channel, voltage-gated, type IV, alpha" 15882 rs2058194 SCN4A 6329 17 59374080 NM_000334 NP_000325 C/T N1376D plus 3172517 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 40 0.38 119 "HapMap,doubleHit,submitter,freq,cluster" 17q23-q25.3 "sodium channel, voltage-gated, type IV, alpha" 15883 rs2059696 LY75 4065 2 160499033 NM_002349 NP_002340 A/G Y1391H plus 24313263 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 15884 rs2059696 LY75 4065 2 160499033 NM_002349 NP_002340 A/G Y1391H plus 24313263 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 15885 rs2059696 LY75 4065 2 160499033 NM_002349 NP_002340 A/G Y1391H plus 24313263 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 2q24 lymphocyte antigen 75 15886 rs2060263 BCL2L12 83596 19 54861032 NM_052842 NP_443074 A/C G47V minus 2971384 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15887 rs2060263 BCL2L12 83596 19 54861032 NM_052842 NP_443074 A/C G47V minus 23615322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15888 rs2060263 BCL2L12 83596 19 54861032 NM_052842 NP_443074 A/C G47V minus 23615322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.19 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15889 rs2060263 BCL2L12 83596 19 54861032 NM_052842 NP_443074 A/C G47V minus 23615322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15890 rs2060263 BCL2L12 83596 19 54861032 NM_138639 NP_619580 A/C G47V minus 2971384 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15891 rs2060263 BCL2L12 83596 19 54861032 NM_138639 NP_619580 A/C G47V minus 23615322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15892 rs2060263 BCL2L12 83596 19 54861032 NM_138639 NP_619580 A/C G47V minus 23615322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.19 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15893 rs2060263 BCL2L12 83596 19 54861032 NM_138639 NP_619580 A/C G47V minus 23615322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.3 BCL2-like 12 (proline rich) 15894 rs2061690 PBXIP1 57326 1 151732153 NM_020524 NP_065385 C/T G357D plus 2972903 1303 SEQUENOM CEPH CEPH (92) 92 0.49 120 "by doubleHit,freq,cluster" 1q22 pre-B-cell leukemia transcription factor interacting protein 1 15895 rs2061690 PBXIP1 57326 1 151732153 NM_020524 NP_065385 C/T G357D plus 4939674 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.08 120 "by doubleHit,freq,cluster" 1q22 pre-B-cell leukemia transcription factor interacting protein 1 15896 rs2061821 AKAP13 11214 15 83923658 NM_006738 NP_006729 C/T M452T plus 2973041 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15897 rs2061821 AKAP13 11214 15 83923658 NM_007200 NP_009131 C/T M452T plus 2973041 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 120 "HapMap,doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15898 rs2061822 AKAP13 11214 15 83923783 NM_006738 NP_006729 C/T W494R plus 23337988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15899 rs2061822 AKAP13 11214 15 83923783 NM_006738 NP_006729 C/T W494R plus 23337988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15900 rs2061822 AKAP13 11214 15 83923783 NM_006738 NP_006729 C/T W494R plus 23337988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15901 rs2061822 AKAP13 11214 15 83923783 NM_007200 NP_009131 C/T W494R plus 23337988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15902 rs2061822 AKAP13 11214 15 83923783 NM_007200 NP_009131 C/T W494R plus 23337988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15903 rs2061822 AKAP13 11214 15 83923783 NM_007200 NP_009131 C/T W494R plus 23337988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 15904 rs2062988 DHTKD1 55526 10 12183111 NM_018706 NP_061176 C/G I607M plus 2974308 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 15905 rs2062988 DHTKD1 55526 10 12183111 NM_018706 NP_061176 C/G I607M plus 4926021 738 YUSUKE JBIC-ALLELE Japanese (752) 1256 0.26 123 "HapMap,doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 15906 rs2062988 DHTKD1 55526 10 12183111 NM_018706 NP_061176 C/G I607M plus 23243374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 15907 rs2062988 DHTKD1 55526 10 12183111 NM_018706 NP_061176 C/G I607M plus 23243374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 15908 rs2062988 DHTKD1 55526 10 12183111 NM_018706 NP_061176 C/G I607M plus 23243374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 15909 rs2064318 TULP1 7287 6 35585003 NM_003322 NP_003313 C/G K261N minus 2975743 901 AFFY AfAm 10 1 121 "by cluster,freq" 6p21.3 tubby like protein 1 15910 rs2064318 TULP1 7287 6 35585003 NM_003322 NP_003313 C/G K261N minus 2975743 902 AFFY Caucasian 24 0.13 121 "by cluster,freq" 6p21.3 tubby like protein 1 15911 rs2064318 TULP1 7287 6 35585003 NM_003322 NP_003313 C/G K261N minus 2975743 903 AFFY Asian 12 1 121 "by cluster,freq" 6p21.3 tubby like protein 1 15912 rs2064318 TULP1 7287 6 35585003 NM_003322 NP_003313 C/G K261N minus 2975743 904 AFFY CEPH 12 0.25 121 "by cluster,freq" 6p21.3 tubby like protein 1 15913 rs2064318 TULP1 7287 6 35585003 NM_003322 NP_003313 C/G K261N minus 2975743 905 AFFY PDpanel 42 0.21 121 "by cluster,freq" 6p21.3 tubby like protein 1 15914 rs2066455 PMS1 5378 2 190554278 NM_000534 NP_000525 C/G E720D plus 2978048 506 NCBI NIHPDR NIHPDR 84 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15915 rs2066455 PMS1 5378 2 190554278 NM_000534 NP_000525 C/G E720D plus 7986962 693 EGP_SNPS PDR90 NIHPDR 180 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15916 rs2066455 PMS1 5378 2 190554278 NM_000534 NP_000525 C/G E720D plus 7986962 1303 SEQUENOM CEPH CEPH (92) 92 1 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15917 rs2066456 PMS1 5378 2 190554013 NM_000534 NP_000525 A/G N632S plus 2978049 506 NCBI NIHPDR NIHPDR 84 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15918 rs2066456 PMS1 5378 2 190554013 NM_000534 NP_000525 A/G N632S plus 7986961 693 EGP_SNPS PDR90 NIHPDR 176 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15919 rs2066456 PMS1 5378 2 190554013 NM_000534 NP_000525 A/G N632S plus 7986961 1303 SEQUENOM CEPH CEPH (92) 92 1 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15920 rs2066459 PMS1 5378 2 190534218 NM_000534 NP_000525 A/G R202K plus 2978053 506 NCBI NIHPDR NIHPDR 72 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15921 rs2066459 PMS1 5378 2 190534218 NM_000534 NP_000525 A/G R202K plus 7986900 693 EGP_SNPS PDR90 NIHPDR 180 0.01 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15922 rs2066459 PMS1 5378 2 190534218 NM_000534 NP_000525 A/G R202K plus 7986900 1303 SEQUENOM CEPH CEPH (92) 92 0.07 114 "by cluster,freq" 2q31.1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) 15923 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 2978076 506 NCBI NIHPDR NIHPDR 80 0.09 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15924 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 3240238 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.24 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15925 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 5586587 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.12 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15926 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 5586587 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15927 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 5586587 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15928 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 5586587 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15929 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 5586587 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15930 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 12584274 693 EGP_SNPS PDR90 NIHPDR 114 0.07 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15931 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 24174312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15932 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 24174312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15933 rs2066479 HSD17B3 3293 9 96077365 NM_000197 NP_000188 A/G G289S minus 24174312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by cluster,freq" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15934 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 2978077 506 NCBI NIHPDR NIHPDR 74 0.03 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15935 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 12584142 693 EGP_SNPS PDR90 NIHPDR 174 0.03 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15936 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 12584142 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15937 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 24077237 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15938 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 24077237 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15939 rs2066480 HSD17B3 3293 9 96143851 NM_000197 NP_000188 A/G V31I minus 24077237 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 9q22 hydroxysteroid (17-beta) dehydrogenase 3 15940 rs2066492 RAD9A 5883 11 66917606 NM_004584 NP_004575 G/T S100A plus 2978089 506 NCBI NIHPDR NIHPDR 818 0 101 "HapMap,cluster" 11q13.1-q13.2 RAD9 homolog A (S. pombe) 15941 rs2066492 RAD9A 5883 11 66917606 NM_004584 NP_004575 G/T S100A plus 2978089 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 101 "HapMap,cluster" 11q13.1-q13.2 RAD9 homolog A (S. pombe) 15942 rs2066497 RFC4 5984 3 187990824 NM_002916 NP_002907 C/T V292A minus 2978106 506 NCBI NIHPDR NIHPDR 90 0.01 123 "by cluster,freq" 3q27 "replication factor C (activator 1) 4, 37kDa" 15943 rs2066497 RFC4 5984 3 187990824 NM_002916 NP_002907 C/T V292A minus 5106057 693 EGP_SNPS PDR90 NIHPDR 168 0.01 123 "by cluster,freq" 3q27 "replication factor C (activator 1) 4, 37kDa" 15944 rs2066497 RFC4 5984 3 187990824 NM_181573 NP_853551 C/T V292A minus 2978106 506 NCBI NIHPDR NIHPDR 90 0.01 123 "by cluster,freq" 3q27 "replication factor C (activator 1) 4, 37kDa" 15945 rs2066497 RFC4 5984 3 187990824 NM_181573 NP_853551 C/T V292A minus 5106057 693 EGP_SNPS PDR90 NIHPDR 168 0.01 123 "by cluster,freq" 3q27 "replication factor C (activator 1) 4, 37kDa" 15946 rs2066518 SMARCAL1 50485 2 217113894 NM_014140 NP_054859 C/G E377Q plus 2978128 506 NCBI NIHPDR NIHPDR 86 0.05 123 "HapMap,freq,cluster" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15947 rs2066518 SMARCAL1 50485 2 217113894 NM_014140 NP_054859 C/G E377Q plus 3217968 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15948 rs2066518 SMARCAL1 50485 2 217113894 NM_014140 NP_054859 C/G E377Q plus 23907810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15949 rs2066518 SMARCAL1 50485 2 217113894 NM_014140 NP_054859 C/G E377Q plus 23907810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15950 rs2066518 SMARCAL1 50485 2 217113894 NM_014140 NP_054859 C/G E377Q plus 23907810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15951 rs2066522 SMARCAL1 50485 2 217110610 NM_014140 NP_054859 C/G S315R plus 2978132 506 NCBI NIHPDR NIHPDR 88 0.03 101 "by cluster,freq" 2q34-q35 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" 15952 rs2066532 FMO3 2328 1 167815061 NM_006894 NP_008825 C/G E362Q plus 2978146 506 NCBI NIHPDR NIHPDR 86 0.01 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 15953 rs2066532 FMO3 2328 1 167815061 NM_006894 NP_008825 C/G E362Q plus 23197438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 15954 rs2066532 FMO3 2328 1 167815061 NM_006894 NP_008825 C/G E362Q plus 23197438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 15955 rs2066532 FMO3 2328 1 167815061 NM_006894 NP_008825 C/G E362Q plus 23197438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 15956 rs2066575 DLEU1 10301 13 49554583 NM_005887 NP_005878 A/T C4S plus 4045551 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.3 "deleted in lymphocytic leukemia, 1" 15957 rs2066575 DLEU1 10301 13 49554583 NM_005887 NP_005878 A/T C4S plus 14647001 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.3 "deleted in lymphocytic leukemia, 1" 15958 rs2066575 DLEU1 10301 13 49554583 NM_005887 NP_005878 A/T C4S plus 24002084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.3 "deleted in lymphocytic leukemia, 1" 15959 rs2066575 DLEU1 10301 13 49554583 NM_005887 NP_005878 A/T C4S plus 24002084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.3 "deleted in lymphocytic leukemia, 1" 15960 rs2066575 DLEU1 10301 13 49554583 NM_005887 NP_005878 A/T C4S plus 24002084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 13q14.3 "deleted in lymphocytic leukemia, 1" 15961 rs2066702 ADH1B 125 4 100586195 NM_000668 NP_000659 C/T R370C minus 5586188 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 116 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 15962 rs2066702 ADH1B 125 4 100586195 NM_000668 NP_000659 C/T R370C minus 5586188 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 15963 rs2066702 ADH1B 125 4 100586195 NM_000668 NP_000659 C/T R370C minus 5586188 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 116 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 15964 rs2066702 ADH1B 125 4 100586195 NM_000668 NP_000659 C/T R370C minus 5586188 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 15965 rs2066702 ADH1B 125 4 100586195 NM_000668 NP_000659 C/T R370C minus 5586188 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 15966 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 2978369 524 LDN AUTISM USA (autistic probands) 20 0.15 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15967 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 2978369 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15968 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 2978369 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15969 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 23748339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15970 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 23748339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15971 rs2066703 ATP10A 57194 15 23513151 NM_024490 NP_077816 C/T T532M minus 23748339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 15q11-q13 "ATPase, Class V, type 10A" 15972 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 2978370 524 LDN AUTISM USA (autistic probands) 20 0.2 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15973 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 2978370 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15974 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 2978370 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15975 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 23748312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15976 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 23748312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15977 rs2066704 ATP10A 57194 15 23504535 NM_024490 NP_077816 A/G A784T minus 23748312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 15978 rs2066718 ABCA1 19 9 104668810 NM_005502 NP_005493 A/G V771M minus 10500104 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 15979 rs2066791 RFC1 5981 4 39132915 NM_002913 NP_002904 A/G I598V minus 2978462 506 NCBI NIHPDR NIHPDR 84 0.01 98 "by submitter,cluster" 4p14-p13 "replication factor C (activator 1) 1, 145kDa" 15980 rs2066791 RFC1 5981 4 39132915 NM_002913 NP_002904 A/G I598V minus 2978462 1303 SEQUENOM CEPH CEPH (92) 92 1 98 "by submitter,cluster" 4p14-p13 "replication factor C (activator 1) 1, 145kDa" 15981 rs2066807 STAT2 6773 12 55026949 NM_005419 NP_005410 C/G M594I minus 2978483 506 NCBI NIHPDR NIHPDR 56 0.07 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15982 rs2066807 STAT2 6773 12 55026949 NM_005419 NP_005410 C/G M594I minus 16361231 693 EGP_SNPS PDR90 NIHPDR 176 0.07 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15983 rs2066807 STAT2 6773 12 55026949 NM_005419 NP_005410 C/G M594I minus 16361231 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15984 rs2066809 STAT2 6773 12 55029049 NM_005419 NP_005410 G/T S501I minus 2978485 506 NCBI NIHPDR NIHPDR 76 0.01 98 "HapMap,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15985 rs2066809 STAT2 6773 12 55029049 NM_005419 NP_005410 G/T S501I minus 2978485 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 98 "HapMap,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15986 rs2066809 STAT2 6773 12 55029049 NM_005419 NP_005410 G/T S501I minus 2978485 1303 SEQUENOM CEPH CEPH (92) 92 1 98 "HapMap,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15987 rs2066811 STAT2 6773 12 55029264 NM_005419 NP_005410 A/G I464V minus 2978489 506 NCBI NIHPDR NIHPDR 76 0.05 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15988 rs2066811 STAT2 6773 12 55029264 NM_005419 NP_005410 A/G I464V minus 16361225 693 EGP_SNPS PDR90 NIHPDR 178 0.06 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15989 rs2066811 STAT2 6773 12 55029264 NM_005419 NP_005410 A/G I464V minus 16361225 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15990 rs2066815 STAT2 6773 12 55029311 NM_005419 NP_005410 C/T T448M minus 2978493 506 NCBI NIHPDR NIHPDR 76 0.01 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15991 rs2066815 STAT2 6773 12 55029311 NM_005419 NP_005410 C/T T448M minus 16361224 693 EGP_SNPS PDR90 NIHPDR 178 0.02 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15992 rs2066815 STAT2 6773 12 55029311 NM_005419 NP_005410 C/T T448M minus 16361224 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15993 rs2066816 STAT2 6773 12 55036270 NM_005419 NP_005410 G/T Q66H minus 2978495 506 NCBI NIHPDR NIHPDR 82 0.28 98 "HapMap,freq,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15994 rs2066816 STAT2 6773 12 55036270 NM_005419 NP_005410 G/T Q66H minus 2978495 885 TSC-CSHL HapMap-CEPH-30-trios 104 1 98 "HapMap,freq,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15995 rs2066816 STAT2 6773 12 55036270 NM_005419 NP_005410 G/T Q66H minus 2978495 1303 SEQUENOM CEPH CEPH (92) 92 1 98 "HapMap,freq,cluster" 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 15996 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 2978511 506 NCBI NIHPDR NIHPDR 82 0.27 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 15997 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 3176696 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.4 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 15998 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 4329016 693 EGP_SNPS PDR90 NIHPDR 178 0.28 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 15999 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 4329016 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.21 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16000 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 4329016 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16001 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 5607385 693 EGP_SNPS PDR90 NIHPDR 178 0.29 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16002 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 24702910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16003 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 24702910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16004 rs2066827 CDKN1B 1027 12 12762366 NM_004064 NP_004055 G/T V109G plus 24702910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,freq,cluster" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16005 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 2978512 506 NCBI NIHPDR NIHPDR 86 0.01 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16006 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 4329015 693 EGP_SNPS PDR90 NIHPDR 180 0.01 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16007 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 4329015 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16008 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 5607384 693 EGP_SNPS PDR90 NIHPDR 180 0.01 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16009 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 6903714 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16010 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 6903714 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16011 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 6903714 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16012 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 6903714 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16013 rs2066828 CDKN1B 1027 12 12762083 NM_004064 NP_004055 C/T R15W plus 6903714 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 12p13.1-p12 "cyclin-dependent kinase inhibitor 1B (p27, Kip1)" 16014 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 2978533 594 CEPH EUCAUC French Caucasians (10 individuals with crohn's disease and 2 unaffected individuals were used as controls) 24 0.46 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16015 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 2978533 1303 SEQUENOM CEPH CEPH (92) 92 0.42 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16016 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 2992219 611 GKT-CGM CD_UK-POP UK (crohn's disease) (32) 64 0.33 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16017 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 7987091 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16018 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 7987091 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.3 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16019 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 7987091 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.33 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16020 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 24523863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16021 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 24523863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16022 rs2066842 CARD15 64127 16 49302125 NM_022162 NP_071445 C/T P268S plus 24523863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16023 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 2978536 594 CEPH EUCAUC French Caucasians (10 individuals with crohn's disease and 2 unaffected individuals were used as controls) 24 0.17 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16024 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 2992222 611 GKT-CGM CD_UK-POP UK (crohn's disease) (32) 64 0.14 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16025 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 7987100 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16026 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 7987100 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16027 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 7987100 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16028 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 8819693 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16029 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 8819693 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16030 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 8819693 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16031 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 8819693 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16032 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 8819693 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16033 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 24523902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16034 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 24523902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16035 rs2066844 CARD15 64127 16 49303427 NM_022162 NP_071445 C/T R702W plus 24523902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 16036 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 2978537 594 CEPH EUCAUC French Caucasians (10 individuals with crohn's disease and 2 unaffected individuals were used as controls) 20 0.15 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16037 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 2978537 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16038 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 2978537 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16039 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 2992223 611 GKT-CGM CD_UK-POP UK (crohn's disease) (32) 64 0.06 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16040 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 12675296 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16041 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 12675296 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16042 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 12675296 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16043 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 12675296 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16044 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 12675296 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16045 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 24524028 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16046 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 24524028 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16047 rs2066845 CARD15 64127 16 49314041 NM_022162 NP_071445 C/G G908R plus 24524028 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 16p12-q21 "caspase recruitment domain family, member 15" 16048 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 2978548 593 IMB-FU-BERLIN CAUCASIAN German Caucasians 199 0.16 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16049 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.23 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16050 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16051 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16052 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16053 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16054 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 5586223 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16055 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 28461207 549 KYUGEN CP CEPH (78) 156 0.07 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16056 rs2066853 AHR 196 7 17152350 NM_001621 NP_001612 A/G R554K plus 28461207 1334 KYUGEN JPK Japanese (110) 220 0.43 123 "by doubleHit,freq,cluster" 7p15 aryl hydrocarbon receptor 16057 rs2066870 FGG 2266 4 155888938 NM_000509 NP_000500 C/T Y140H minus 2978565 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.05 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16058 rs2066870 FGG 2266 4 155888938 NM_000509 NP_000500 C/T Y140H minus 23691884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16059 rs2066870 FGG 2266 4 155888938 NM_000509 NP_000500 C/T Y140H minus 23691884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16060 rs2066870 FGG 2266 4 155888938 NM_000509 NP_000500 C/T Y140H minus 23691884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16061 rs2066870 FGG 2266 4 155888938 NM_021870 NP_068656 C/T Y140H minus 2978565 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.05 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16062 rs2066870 FGG 2266 4 155888938 NM_021870 NP_068656 C/T Y140H minus 23691884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16063 rs2066870 FGG 2266 4 155888938 NM_021870 NP_068656 C/T Y140H minus 23691884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16064 rs2066870 FGG 2266 4 155888938 NM_021870 NP_068656 C/T Y140H minus 23691884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q28 "fibrinogen, gamma polypeptide" 16065 rs2066964 CARD14 79092 17 75786539 NM_024110 NP_077015 C/G R547S minus 24122984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16066 rs2066964 CARD14 79092 17 75786539 NM_024110 NP_077015 C/G R547S minus 24122984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16067 rs2066964 CARD14 79092 17 75786539 NM_024110 NP_077015 C/G R547S minus 24122984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16068 rs2066964 CARD14 79092 17 75786539 NM_052819 NP_438170 C/G R310S minus 24122984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16069 rs2066964 CARD14 79092 17 75786539 NM_052819 NP_438170 C/G R310S minus 24122984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16070 rs2066964 CARD14 79092 17 75786539 NM_052819 NP_438170 C/G R310S minus 24122984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 16071 rs2066982 TNXB 7148 6 32133848 NM_019105 NP_061978 A/G R2657Q minus 2990660 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1414 0.22 121 "by doubleHit,cluster" 6p21.3 tenascin XB 16072 rs2067019 TJP3 27134 19 3679609 NM_014428 NP_055243 A/G R38H plus 2993969 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,freq,cluster" 19p13.3 tight junction protein 3 (zona occludens 3) 16073 rs2068061 ZNF224 7767 19 49302505 NM_013398 NP_037530 C/T M118V minus 24113170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 16074 rs2068061 ZNF224 7767 19 49302505 NM_013398 NP_037530 C/T M118V minus 24113170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 16075 rs2068061 ZNF224 7767 19 49302505 NM_013398 NP_037530 C/T M118V minus 24113170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 16076 rs2068178 ARPM1 84517 3 170968341 NM_032487 NP_115876 A/G E234K minus 2979953 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.01 123 "HapMap,submitter,freq,cluster" 3q26.31 actin related protein M1 16077 rs2068178 ARPM1 84517 3 170968341 NM_032487 NP_115876 A/G E234K minus 4918447 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "HapMap,submitter,freq,cluster" 3q26.31 actin related protein M1 16078 rs2068178 ARPM1 84517 3 170968341 NM_032487 NP_115876 A/G E234K minus 23327187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 3q26.31 actin related protein M1 16079 rs2068178 ARPM1 84517 3 170968341 NM_032487 NP_115876 A/G E234K minus 23327187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 3q26.31 actin related protein M1 16080 rs2068178 ARPM1 84517 3 170968341 NM_032487 NP_115876 A/G E234K minus 23327187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 3q26.31 actin related protein M1 16081 rs2069413 CDK2 1017 12 54651648 NM_001798 NP_001789 C/G T290S plus 2981470 555 UUGC NIH90 NIHPDR 176 0.01 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16082 rs2069413 CDK2 1017 12 54651648 NM_001798 NP_001789 C/G T290S plus 2981470 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16083 rs2069413 CDK2 1017 12 54651648 NM_001798 NP_001789 C/G T290S plus 3205744 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16084 rs2069413 CDK2 1017 12 54651648 NM_001798 NP_001789 C/G T290S plus 4473687 693 EGP_SNPS PDR90 NIHPDR 172 0.01 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16085 rs2069413 CDK2 1017 12 54651648 NM_052827 NP_439892 C/G T256S plus 2981470 555 UUGC NIH90 NIHPDR 176 0.01 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16086 rs2069413 CDK2 1017 12 54651648 NM_052827 NP_439892 C/G T256S plus 2981470 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16087 rs2069413 CDK2 1017 12 54651648 NM_052827 NP_439892 C/G T256S plus 3205744 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16088 rs2069413 CDK2 1017 12 54651648 NM_052827 NP_439892 C/G T256S plus 4473687 693 EGP_SNPS PDR90 NIHPDR 172 0.01 106 "HapMap,freq,cluster" 12q13 cyclin-dependent kinase 2 16089 rs2069683 F2RL2 2151 5 75949540 NM_004101 NP_004092 A/G N250D minus 2981776 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by submitter,freq,cluster" 5q13 coagulation factor II (thrombin) receptor-like 2 16090 rs2069683 F2RL2 2151 5 75949540 NM_004101 NP_004092 A/G N250D minus 2981776 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.05 123 "by submitter,freq,cluster" 5q13 coagulation factor II (thrombin) receptor-like 2 16091 rs2069683 F2RL2 2151 5 75949540 NM_004101 NP_004092 A/G N250D minus 24189437 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 5q13 coagulation factor II (thrombin) receptor-like 2 16092 rs2069683 F2RL2 2151 5 75949540 NM_004101 NP_004092 A/G N250D minus 24189437 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 5q13 coagulation factor II (thrombin) receptor-like 2 16093 rs2069683 F2RL2 2151 5 75949540 NM_004101 NP_004092 A/G N250D minus 24189437 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq,cluster" 5q13 coagulation factor II (thrombin) receptor-like 2 16094 rs2069700 F2RL2 2151 5 75949759 NM_004101 NP_004092 A/G M177V minus 2981797 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 "by submitter,freq" 5q13 coagulation factor II (thrombin) receptor-like 2 16095 rs2069700 F2RL2 2151 5 75949759 NM_004101 NP_004092 A/G M177V minus 24675850 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq" 5q13 coagulation factor II (thrombin) receptor-like 2 16096 rs2069700 F2RL2 2151 5 75949759 NM_004101 NP_004092 A/G M177V minus 24675850 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq" 5q13 coagulation factor II (thrombin) receptor-like 2 16097 rs2069700 F2RL2 2151 5 75949759 NM_004101 NP_004092 A/G M177V minus 24675850 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 5q13 coagulation factor II (thrombin) receptor-like 2 16098 rs2069830 IL6 3569 7 22540377 NM_000600 NP_000591 C/T P32S plus 2981948 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 96 by freq 7p21 "interleukin 6 (interferon, beta 2)" 16099 rs2069860 IL6 3569 7 22544278 NM_000600 NP_000591 A/T D162V plus 2981987 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 7p21 "interleukin 6 (interferon, beta 2)" 16100 rs2069860 IL6 3569 7 22544278 NM_000600 NP_000591 A/T D162V plus 12568586 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 189 1 123 "by cluster,freq" 7p21 "interleukin 6 (interferon, beta 2)" 16101 rs2069860 IL6 3569 7 22544278 NM_000600 NP_000591 A/T D162V plus 24395612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7p21 "interleukin 6 (interferon, beta 2)" 16102 rs2069860 IL6 3569 7 22544278 NM_000600 NP_000591 A/T D162V plus 24395612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7p21 "interleukin 6 (interferon, beta 2)" 16103 rs2069860 IL6 3569 7 22544278 NM_000600 NP_000591 A/T D162V plus 24395612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7p21 "interleukin 6 (interferon, beta 2)" 16104 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 2982016 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.13 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16105 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 2982016 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.12 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16106 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 17067099 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16107 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 24665721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16108 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 24665721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16109 rs2069885 IL9 3578 5 135256064 NM_000590 NP_000581 C/T T117M minus 24665721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 5q31.1 interleukin 9 16110 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 5606240 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.36 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16111 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 5606240 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.37 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16112 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 5606240 776 SNP500CANCER AFR1 African / African-American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16113 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 5606240 777 SNP500CANCER HISP1 Hispanic (23) 46 0.33 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16114 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 5606240 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.42 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16115 rs2070094 BARD1 580 2 215457761 NM_000465 NP_000456 A/G V507M minus 24795955 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 "by doubleHit,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 16116 rs2070121 HLA-DOB 3112 6 32889532 NM_002120 NP_002111 C/T L234F minus 23718032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 16117 rs2070121 HLA-DOB 3112 6 32889532 NM_002120 NP_002111 C/T L234F minus 23718032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 16118 rs2070121 HLA-DOB 3112 6 32889532 NM_002120 NP_002111 C/T L234F minus 23718032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 16119 rs2070121 HLA-DOB 3112 6 32889532 NM_002120 NP_002111 C/T L234F minus 28459812 549 KYUGEN CP CEPH (78) 156 0.1 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 16120 rs2070121 HLA-DOB 3112 6 32889532 NM_002120 NP_002111 C/T L234F minus 28459812 1335 KYUGEN JPK2 Japanese (100) 200 0.01 123 "by doubleHit,submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 16121 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16122 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 902 AFFY Caucasian 22 0.05 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16123 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 903 AFFY Asian 12 0.08 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16124 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 904 AFFY CEPH 12 1 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16125 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 905 AFFY PDpanel 42 0.02 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16126 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 2983898 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.18 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16127 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 23841004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16128 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 23841004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16129 rs2070123 IFI44 10561 1 78827926 NM_006417 NP_006408 C/T W9R plus 23841004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1p31.1 interferon-induced protein 44 16130 rs2070132 ZNF146 7705 19 41419205 NM_007145 NP_009076 A/G R8K plus 24683112 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 19q13.1 zinc finger protein 146 16131 rs2070132 ZNF146 7705 19 41419205 NM_007145 NP_009076 A/G R8K plus 24683112 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,submitter,freq,cluster" 19q13.1 zinc finger protein 146 16132 rs2070132 ZNF146 7705 19 41419205 NM_007145 NP_009076 A/G R8K plus 24683112 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.43 123 "by doubleHit,submitter,freq,cluster" 19q13.1 zinc finger protein 146 16133 rs2070150 ATF6 22926 1 158492934 NM_007348 NP_031374 C/G A145P plus 4427215 1303 SEQUENOM CEPH CEPH (92) 92 0.03 123 "by cluster,freq" 1q22-q23 activating transcription factor 6 16134 rs2070150 ATF6 22926 1 158492934 NM_007348 NP_031374 C/G A145P plus 23843006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q22-q23 activating transcription factor 6 16135 rs2070150 ATF6 22926 1 158492934 NM_007348 NP_031374 C/G A145P plus 23843006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q22-q23 activating transcription factor 6 16136 rs2070150 ATF6 22926 1 158492934 NM_007348 NP_031374 C/G A145P plus 23843006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1q22-q23 activating transcription factor 6 16137 rs2070180 HCLS1 3059 3 122834028 NM_005335 NP_005326 A/G E361K minus 4407542 1303 SEQUENOM CEPH CEPH (92) 92 0.33 120 by freq 3q13 hematopoietic cell-specific Lyn substrate 1 16138 rs2070215 MCM7 4176 7 99341448 NM_005916 NP_005907 A/G N144S minus 3255186 506 NCBI NIHPDR NIHPDR 164 0.17 120 "HapMap,freq,cluster" 7q21.3-q22.1 MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) 16139 rs2070215 MCM7 4176 7 99341448 NM_005916 NP_005907 A/G N144S minus 20309717 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 120 "HapMap,freq,cluster" 7q21.3-q22.1 MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) 16140 rs2070215 MCM7 4176 7 99341448 NM_005916 NP_005907 A/G N144S minus 20309717 1303 SEQUENOM CEPH CEPH (92) 92 0.27 120 "HapMap,freq,cluster" 7q21.3-q22.1 MCM7 minichromosome maintenance deficient 7 (S. cerevisiae) 16141 rs2070235 MYBL2 4605 20 41764871 NM_002466 NP_002457 A/G S427G plus 3172553 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.19 123 "by doubleHit,submitter,freq,cluster" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 16142 rs2070235 MYBL2 4605 20 41764871 NM_002466 NP_002457 A/G S427G plus 3239324 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.18 123 "by doubleHit,submitter,freq,cluster" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 16143 rs2070235 MYBL2 4605 20 41764871 NM_002466 NP_002457 A/G S427G plus 23648539 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 16144 rs2070235 MYBL2 4605 20 41764871 NM_002466 NP_002457 A/G S427G plus 23648539 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 16145 rs2070235 MYBL2 4605 20 41764871 NM_002466 NP_002457 A/G S427G plus 23648539 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 16146 rs2070317 BPIL3 128859 20 31085744 NM_174897 NP_777557 A/G V97I plus 2983523 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.21 123 "by doubleHit,submitter,freq,cluster" 20q11.22 bactericidal/permeability-increasing protein-like 3 16147 rs2070317 BPIL3 128859 20 31085744 NM_174897 NP_777557 A/G V97I plus 24533889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 20q11.22 bactericidal/permeability-increasing protein-like 3 16148 rs2070317 BPIL3 128859 20 31085744 NM_174897 NP_777557 A/G V97I plus 24533889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,submitter,freq,cluster" 20q11.22 bactericidal/permeability-increasing protein-like 3 16149 rs2070317 BPIL3 128859 20 31085744 NM_174897 NP_777557 A/G V97I plus 24533889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 20q11.22 bactericidal/permeability-increasing protein-like 3 16150 rs2070417 TIAM1 7074 21 31560420 NM_003253 NP_003244 A/C G247V plus 2983649 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.12 98 "HapMap,freq,cluster" 21q22.11 T-cell lymphoma invasion and metastasis 1 16151 rs2070426 PCNT2 5116 21 46674912 NM_006031 NP_006022 C/G Q2659H plus 2983659 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.28 120 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16152 rs2070426 PCNT2 5116 21 46674912 NM_006031 NP_006022 C/G Q2659H plus 12501025 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.4 120 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16153 rs2070446 Rgr 266747 22 22360524 NM_153615 NP_705843 C/T H241Y plus 2983682 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 16154 rs2070446 Rgr 266747 22 22360524 NM_153615 NP_705843 C/T H241Y plus 11005441 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 16155 rs2070446 Rgr 266747 22 22360524 NM_153615 NP_705843 C/T H241Y plus 24104696 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 16156 rs2070446 Rgr 266747 22 22360524 NM_153615 NP_705843 C/T H241Y plus 24104696 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 16157 rs2070446 Rgr 266747 22 22360524 NM_153615 NP_705843 C/T H241Y plus 24104696 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.23 Ral-GDS related protein Rgr 16158 rs2070449 Rgr 266747 22 22361699 NM_153615 NP_705843 G/T M342R plus 2983685 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,cluster" 22q11.23 Ral-GDS related protein Rgr 16159 rs2070507 PPM1F 9647 22 20602125 NM_014634 NP_055449 A/C L420R plus 2983766 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.28 123 "by doubleHit,freq,cluster" 22q11.22 protein phosphatase 1F (PP2C domain containing) 16160 rs2070507 PPM1F 9647 22 20602125 NM_014634 NP_055449 A/C L420R plus 24212133 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 22q11.22 protein phosphatase 1F (PP2C domain containing) 16161 rs2070507 PPM1F 9647 22 20602125 NM_014634 NP_055449 A/C L420R plus 24212133 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 22q11.22 protein phosphatase 1F (PP2C domain containing) 16162 rs2070507 PPM1F 9647 22 20602125 NM_014634 NP_055449 A/C L420R plus 24212133 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,freq,cluster" 22q11.22 protein phosphatase 1F (PP2C domain containing) 16163 rs2070600 AGER 177 6 32259421 NM_001136 NP_001127 A/G G82S minus 2983895 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.13 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16164 rs2070600 AGER 177 6 32259421 NM_001136 NP_001127 A/G G82S minus 24167304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16165 rs2070600 AGER 177 6 32259421 NM_001136 NP_001127 A/G G82S minus 24167304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16166 rs2070600 AGER 177 6 32259421 NM_001136 NP_001127 A/G G82S minus 24167304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16167 rs2070600 AGER 177 6 32259421 NM_172197 NP_751947 A/G G68S minus 2983895 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.13 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16168 rs2070600 AGER 177 6 32259421 NM_172197 NP_751947 A/G G68S minus 24167304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16169 rs2070600 AGER 177 6 32259421 NM_172197 NP_751947 A/G G68S minus 24167304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16170 rs2070600 AGER 177 6 32259421 NM_172197 NP_751947 A/G G68S minus 24167304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by cluster,freq" 6p21.3 advanced glycosylation end product-specific receptor 16171 rs2070661 NPAT 4863 11 107549198 NM_002519 NP_002510 A/G V575I minus 2983974 738 YUSUKE JBIC-ALLELE Japanese (752) 918 0.49 123 "HapMap,doubleHit,freq,cluster" 11q22-q23 "nuclear protein, ataxia-telangiectasia locus" 16172 rs2070661 NPAT 4863 11 107549198 NM_002519 NP_002510 A/G V575I minus 6556741 885 TSC-CSHL HapMap-CEPH-30-trios 55 0.5 123 "HapMap,doubleHit,freq,cluster" 11q22-q23 "nuclear protein, ataxia-telangiectasia locus" 16173 rs2070661 NPAT 4863 11 107549198 NM_002519 NP_002510 A/G V575I minus 23659836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 11q22-q23 "nuclear protein, ataxia-telangiectasia locus" 16174 rs2070661 NPAT 4863 11 107549198 NM_002519 NP_002510 A/G V575I minus 23659836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,freq,cluster" 11q22-q23 "nuclear protein, ataxia-telangiectasia locus" 16175 rs2070661 NPAT 4863 11 107549198 NM_002519 NP_002510 A/G V575I minus 23659836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 11q22-q23 "nuclear protein, ataxia-telangiectasia locus" 16176 rs2070739 COL2A1 1280 12 46654243 NM_001844 NP_001835 A/G G1405S minus 3176862 619 WICVAR MITOGPOP6 CORIELL Mixed 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16177 rs2070739 COL2A1 1280 12 46654243 NM_001844 NP_001835 A/G G1405S minus 3176862 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16178 rs2070739 COL2A1 1280 12 46654243 NM_001844 NP_001835 A/G G1405S minus 24137485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16179 rs2070739 COL2A1 1280 12 46654243 NM_001844 NP_001835 A/G G1405S minus 24137485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16180 rs2070739 COL2A1 1280 12 46654243 NM_001844 NP_001835 A/G G1405S minus 24137485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16181 rs2070739 COL2A1 1280 12 46654243 NM_033150 NP_149162 A/G G1336S minus 3176862 619 WICVAR MITOGPOP6 CORIELL Mixed 12 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16182 rs2070739 COL2A1 1280 12 46654243 NM_033150 NP_149162 A/G G1336S minus 3176862 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16183 rs2070739 COL2A1 1280 12 46654243 NM_033150 NP_149162 A/G G1336S minus 24137485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16184 rs2070739 COL2A1 1280 12 46654243 NM_033150 NP_149162 A/G G1336S minus 24137485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16185 rs2070739 COL2A1 1280 12 46654243 NM_033150 NP_149162 A/G G1336S minus 24137485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 16186 rs2070745 FPR1 2357 19 56941759 NM_002029 NP_002020 C/G V101L minus 24686736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 19q13.4 formyl peptide receptor 1 16187 rs2070745 FPR1 2357 19 56941759 NM_002029 NP_002020 C/G V101L minus 24686736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 19q13.4 formyl peptide receptor 1 16188 rs2070745 FPR1 2357 19 56941759 NM_002029 NP_002020 C/G V101L minus 24686736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.4 formyl peptide receptor 1 16189 rs2070832 ZNF23 7571 16 70044707 NM_145911 NP_666016 C/T S28G plus 2984205 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.36 121 "HapMap,doubleHit,freq,cluster" 16q22 zinc finger protein 23 (KOX 16) 16190 rs2070832 ZNF23 7571 16 70044707 NM_145911 NP_666016 C/T S28G plus 6608266 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq,cluster" 16q22 zinc finger protein 23 (KOX 16) 16191 rs2070845 IFIT2 3433 10 91056055 NM_001547 NP_001538 A/G K121R plus 24546684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 16192 rs2070845 IFIT2 3433 10 91056055 NM_001547 NP_001538 A/G K121R plus 24546684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 16193 rs2070845 IFIT2 3433 10 91056055 NM_001547 NP_001538 A/G K121R plus 24546684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 16194 rs2070862 SERPINF2 5345 17 1595044 NM_000934 NP_000925 C/T A2V plus 2984258 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.16 98 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 16195 rs2070862 SERPINF2 5345 17 1595044 NM_000934 NP_000925 C/T A2V plus 2984258 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 98 "HapMap,freq,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 16196 rs2070863 SERPINF2 5345 17 1595252 NM_000934 NP_000925 C/T R33W plus 2984259 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.17 102 "by doubleHit,cluster" 17p13 "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" 16197 rs2070956 FUCA1 2517 1 23940054 NM_000147 NP_000138 C/G P5R minus 23856305 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1p34 "fucosidase, alpha-L- 1, tissue" 16198 rs2070956 FUCA1 2517 1 23940054 NM_000147 NP_000138 C/G P5R minus 23856305 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 1p34 "fucosidase, alpha-L- 1, tissue" 16199 rs2070956 FUCA1 2517 1 23940054 NM_000147 NP_000138 C/G P5R minus 23856305 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 1p34 "fucosidase, alpha-L- 1, tissue" 16200 rs2070959 UGT1A6 54578 2 234384191 NM_001072 NP_001063 A/G T181A plus 2984402 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.25 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 16201 rs2070959 UGT1A6 54578 2 234384191 NM_001072 NP_001063 A/G T181A plus 5239097 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 16202 rs2070959 UGT1A6 54578 2 234384191 NM_001072 NP_001063 A/G T181A plus 24281282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 16203 rs2070959 UGT1A6 54578 2 234384191 NM_001072 NP_001063 A/G T181A plus 24281282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 16204 rs2070959 UGT1A6 54578 2 234384191 NM_001072 NP_001063 A/G T181A plus 24281282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 16205 rs2071072 B7 10233 12 6885336 NM_006992 NP_008923 A/C N65H plus 2984564 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 123 "HapMap,freq,cluster" 12p13 B7 gene 16206 rs2071072 B7 10233 12 6885336 NM_006992 NP_008923 A/C N65H plus 2984564 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 123 "HapMap,freq,cluster" 12p13 B7 gene 16207 rs2071072 B7 10233 12 6885336 NM_006992 NP_008923 A/C N65H plus 24207778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 12p13 B7 gene 16208 rs2071072 B7 10233 12 6885336 NM_006992 NP_008923 A/C N65H plus 24207778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 12p13 B7 gene 16209 rs2071072 B7 10233 12 6885336 NM_006992 NP_008923 A/C N65H plus 24207778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,freq,cluster" 12p13 B7 gene 16210 rs2071072 B7 10233 12 6885336 NM_201650 NP_964013 A/C N65H plus 2984564 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 123 "HapMap,freq,cluster" 12p13 B7 gene 16211 rs2071072 B7 10233 12 6885336 NM_201650 NP_964013 A/C N65H plus 2984564 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 123 "HapMap,freq,cluster" 12p13 B7 gene 16212 rs2071072 B7 10233 12 6885336 NM_201650 NP_964013 A/C N65H plus 24207778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 12p13 B7 gene 16213 rs2071072 B7 10233 12 6885336 NM_201650 NP_964013 A/C N65H plus 24207778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 12p13 B7 gene 16214 rs2071072 B7 10233 12 6885336 NM_201650 NP_964013 A/C N65H plus 24207778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,freq,cluster" 12p13 B7 gene 16215 rs2071073 B7 10233 12 6885968 NM_006992 NP_008923 G/T R124L plus 2984565 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1484 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16216 rs2071073 B7 10233 12 6885968 NM_006992 NP_008923 G/T R124L plus 11042621 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16217 rs2071073 B7 10233 12 6885968 NM_006992 NP_008923 G/T R124L plus 24207779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16218 rs2071073 B7 10233 12 6885968 NM_006992 NP_008923 G/T R124L plus 24207779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16219 rs2071073 B7 10233 12 6885968 NM_006992 NP_008923 G/T R124L plus 24207779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16220 rs2071073 B7 10233 12 6885968 NM_201650 NP_964013 G/T R124L plus 2984565 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1484 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16221 rs2071073 B7 10233 12 6885968 NM_201650 NP_964013 G/T R124L plus 11042621 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16222 rs2071073 B7 10233 12 6885968 NM_201650 NP_964013 G/T R124L plus 24207779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16223 rs2071073 B7 10233 12 6885968 NM_201650 NP_964013 G/T R124L plus 24207779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16224 rs2071073 B7 10233 12 6885968 NM_201650 NP_964013 G/T R124L plus 24207779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13 B7 gene 16225 rs2071152 TMEM1 7109 21 44327549 NM_003274 NP_003265 A/G V726M plus 2984655 738 YUSUKE JBIC-ALLELE Japanese (752) 1100 0.32 123 "by doubleHit,submitter,freq,cluster" 21q22.3 transmembrane protein 1 16226 rs2071152 TMEM1 7109 21 44327549 NM_003274 NP_003265 A/G V726M plus 4019217 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.29 123 "by doubleHit,submitter,freq,cluster" 21q22.3 transmembrane protein 1 16227 rs2071152 TMEM1 7109 21 44327549 NM_003274 NP_003265 A/G V726M plus 23535617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 21q22.3 transmembrane protein 1 16228 rs2071152 TMEM1 7109 21 44327549 NM_003274 NP_003265 A/G V726M plus 23535617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 21q22.3 transmembrane protein 1 16229 rs2071152 TMEM1 7109 21 44327549 NM_003274 NP_003265 A/G V726M plus 23535617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 21q22.3 transmembrane protein 1 16230 rs2071192 EVPL 2125 17 71526263 NM_001988 NP_001979 A/G Q433R minus 2984717 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.35 121 "by doubleHit,cluster" 17q25 envoplakin 16231 rs2071214 BIRC5 332 17 73731186 NM_001168 NP_001159 A/G E129K plus 2984753 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.22 123 "by cluster,freq" 17q25 baculoviral IAP repeat-containing 5 (survivin) 16232 rs2071214 BIRC5 332 17 73731186 NM_001168 NP_001159 A/G E129K plus 24106544 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 17q25 baculoviral IAP repeat-containing 5 (survivin) 16233 rs2071214 BIRC5 332 17 73731186 NM_001168 NP_001159 A/G E129K plus 24106544 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 17q25 baculoviral IAP repeat-containing 5 (survivin) 16234 rs2071214 BIRC5 332 17 73731186 NM_001168 NP_001159 A/G E129K plus 24106544 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 17q25 baculoviral IAP repeat-containing 5 (survivin) 16235 rs2071289 EGFL8 80864 6 32243114 NM_030652 NP_085155 G/T A204E minus 24167282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 16236 rs2071289 EGFL8 80864 6 32243114 NM_030652 NP_085155 G/T A204E minus 24167282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 16237 rs2071289 EGFL8 80864 6 32243114 NM_030652 NP_085155 G/T A204E minus 24167282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 16238 rs2071307 ELN 2006 7 72915365 NM_000501 NP_000492 A/G G422S plus 16338506 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.28 121 "by cluster,freq" 7q11.23 "elastin (supravalvular aortic stenosis, Williams-Beuren syndrome)" 16239 rs2071421 ARSA 410 22 49354560 NM_000487 NP_000478 A/G N350S minus 3294278 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 16240 rs2071421 ARSA 410 22 49354560 NM_000487 NP_000478 A/G N350S minus 8485025 693 EGP_SNPS PDR90 NIHPDR 176 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 16241 rs2071421 ARSA 410 22 49354560 NM_000487 NP_000478 A/G N350S minus 23795637 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 16242 rs2071421 ARSA 410 22 49354560 NM_000487 NP_000478 A/G N350S minus 23795637 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 16243 rs2071421 ARSA 410 22 49354560 NM_000487 NP_000478 A/G N350S minus 23795637 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.33 arylsulfatase A 16244 rs2071496 MKI67 4288 10 129791491 NM_002417 NP_002408 C/G T2868S minus 2985137 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.17 120 "by doubleHit,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 16245 rs2071498 MKI67 4288 10 129807550 NM_002417 NP_002408 A/G N104S minus 2985143 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.34 121 "by doubleHit,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 16246 rs2071499 GUCA2A 2980 1 42299457 NM_033553 NP_291031 C/T S7F minus 2985144 738 YUSUKE JBIC-ALLELE Japanese (752) 714 0.33 123 "by doubleHit,freq,cluster" 1p35-p34 guanylate cyclase activator 2A (guanylin) 16247 rs2071499 GUCA2A 2980 1 42299457 NM_033553 NP_291031 C/T S7F minus 24238910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p35-p34 guanylate cyclase activator 2A (guanylin) 16248 rs2071499 GUCA2A 2980 1 42299457 NM_033553 NP_291031 C/T S7F minus 24238910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 1p35-p34 guanylate cyclase activator 2A (guanylin) 16249 rs2071499 GUCA2A 2980 1 42299457 NM_033553 NP_291031 C/T S7F minus 24238910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 1p35-p34 guanylate cyclase activator 2A (guanylin) 16250 rs2071543 PSMB8 5696 6 32919607 NM_148919 NP_683720 A/C Q49K minus 2985197 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.14 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional protease 7)" 16251 rs2071543 PSMB8 5696 6 32919607 NM_148919 NP_683720 A/C Q49K minus 23718210 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional protease 7)" 16252 rs2071543 PSMB8 5696 6 32919607 NM_148919 NP_683720 A/C Q49K minus 23718210 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional protease 7)" 16253 rs2071543 PSMB8 5696 6 32919607 NM_148919 NP_683720 A/C Q49K minus 23718210 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional protease 7)" 16254 rs2071554 HLA-DOB 3112 6 32892654 NM_002120 NP_002111 A/G R18Q minus 2985213 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.17 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DO beta" 16255 rs2071554 HLA-DOB 3112 6 32892654 NM_002120 NP_002111 A/G R18Q minus 23718055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DO beta" 16256 rs2071554 HLA-DOB 3112 6 32892654 NM_002120 NP_002111 A/G R18Q minus 23718055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DO beta" 16257 rs2071554 HLA-DOB 3112 6 32892654 NM_002120 NP_002111 A/G R18Q minus 23718055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DO beta" 16258 rs2071555 HLA-DMB 3109 6 33013064 NM_002118 NP_002109 A/C A162E minus 2985214 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.2 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DM beta" 16259 rs2071555 HLA-DMB 3109 6 33013064 NM_002118 NP_002109 A/C A162E minus 24169394 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DM beta" 16260 rs2071555 HLA-DMB 3109 6 33013064 NM_002118 NP_002109 A/C A162E minus 24169394 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DM beta" 16261 rs2071555 HLA-DMB 3109 6 33013064 NM_002118 NP_002109 A/C A162E minus 24169394 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DM beta" 16262 rs2071560 KRTHA2 3882 17 36875911 NM_002278 NP_002269 C/T I171T minus 24098677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 16263 rs2071560 KRTHA2 3882 17 36875911 NM_002278 NP_002269 C/T I171T minus 24098677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 16264 rs2071560 KRTHA2 3882 17 36875911 NM_002278 NP_002269 C/T I171T minus 24098677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 16265 rs2071561 KRTHA2 3882 17 36875594 NM_002278 NP_002269 A/C S222Y minus 2985222 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.42 123 "HapMap,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16266 rs2071561 KRTHA2 3882 17 36875594 NM_002278 NP_002269 A/C S222Y minus 2985222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16267 rs2071561 KRTHA2 3882 17 36875594 NM_002278 NP_002269 A/C S222Y minus 24098671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "HapMap,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16268 rs2071561 KRTHA2 3882 17 36875594 NM_002278 NP_002269 A/C S222Y minus 24098671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16269 rs2071561 KRTHA2 3882 17 36875594 NM_002278 NP_002269 A/C S222Y minus 24098671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16270 rs2071563 KRTHA2 3882 17 36872641 NM_002278 NP_002269 C/T T395M minus 2985224 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.37 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16271 rs2071563 KRTHA2 3882 17 36872641 NM_002278 NP_002269 C/T T395M minus 23597064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16272 rs2071563 KRTHA2 3882 17 36872641 NM_002278 NP_002269 C/T T395M minus 23597064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16273 rs2071563 KRTHA2 3882 17 36872641 NM_002278 NP_002269 C/T T395M minus 23597064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 16274 rs2071587 FOXN1 8456 17 23875729 NM_003593 NP_003584 C/T R69C plus 2985252 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.22 123 "HapMap,freq,cluster" 17q11-q12 forkhead box N1 16275 rs2071587 FOXN1 8456 17 23875729 NM_003593 NP_003584 C/T R69C plus 19361492 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 17q11-q12 forkhead box N1 16276 rs2071587 FOXN1 8456 17 23875729 NM_003593 NP_003584 C/T R69C plus 24126107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,freq,cluster" 17q11-q12 forkhead box N1 16277 rs2071587 FOXN1 8456 17 23875729 NM_003593 NP_003584 C/T R69C plus 24126107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 17q11-q12 forkhead box N1 16278 rs2071587 FOXN1 8456 17 23875729 NM_003593 NP_003584 C/T R69C plus 24126107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 17q11-q12 forkhead box N1 16279 rs2071599 KRTHA4 3885 17 36788914 NM_021013 NP_066293 A/G H348R minus 2985271 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.07 121 "by submitter,cluster" 17q12-q21 "keratin, hair, acidic, 4" 16280 rs2071601 KRTHA5 3886 17 36886875 NM_002280 NP_002271 C/G P413A minus 2985273 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1440 0.4 119 "by doubleHit,cluster" 17q12-q21 "keratin, hair, acidic, 5" 16281 rs2071650 SEMG2 6407 20 43284969 NM_003008 NP_002999 C/G G428R plus 2985332 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 123 "by cluster,freq" 20q12-q13.1 semenogelin II 16282 rs2071650 SEMG2 6407 20 43284969 NM_003008 NP_002999 C/G G428R plus 23780306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 20q12-q13.1 semenogelin II 16283 rs2071650 SEMG2 6407 20 43284969 NM_003008 NP_002999 C/G G428R plus 23780306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 20q12-q13.1 semenogelin II 16284 rs2071650 SEMG2 6407 20 43284969 NM_003008 NP_002999 C/G G428R plus 23780306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 20q12-q13.1 semenogelin II 16285 rs2071676 CA9 768 9 35664053 NM_001216 NP_001207 A/G V33M plus 2985365 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.45 123 "HapMap,doubleHit,freq,cluster" 9p13-p12 carbonic anhydrase IX 16286 rs2071676 CA9 768 9 35664053 NM_001216 NP_001207 A/G V33M plus 2985365 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,freq,cluster" 9p13-p12 carbonic anhydrase IX 16287 rs2071676 CA9 768 9 35664053 NM_001216 NP_001207 A/G V33M plus 24085687 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 9p13-p12 carbonic anhydrase IX 16288 rs2071676 CA9 768 9 35664053 NM_001216 NP_001207 A/G V33M plus 24085687 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 9p13-p12 carbonic anhydrase IX 16289 rs2071676 CA9 768 9 35664053 NM_001216 NP_001207 A/G V33M plus 24085687 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 9p13-p12 carbonic anhydrase IX 16290 rs2071699 FUT1 2523 19 53946316 NM_000148 NP_000139 C/T A12V minus 2985392 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 19q13.3 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase) 16291 rs2071699 FUT1 2523 19 53946316 NM_000148 NP_000139 C/T A12V minus 24074059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,freq,cluster" 19q13.3 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase) 16292 rs2071699 FUT1 2523 19 53946316 NM_000148 NP_000139 C/T A12V minus 24074059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19q13.3 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase) 16293 rs2071699 FUT1 2523 19 53946316 NM_000148 NP_000139 C/T A12V minus 24074059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19q13.3 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase) 16294 rs2071747 HMOX1 3162 22 34101739 NM_002133 NP_002124 C/G D7H plus 12675419 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 118 "by cluster,freq" 22q13.1 heme oxygenase (decycling) 1 16295 rs2071747 HMOX1 3162 22 34101739 NM_002133 NP_002124 C/G D7H plus 12675419 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 118 "by cluster,freq" 22q13.1 heme oxygenase (decycling) 1 16296 rs2071747 HMOX1 3162 22 34101739 NM_002133 NP_002124 C/G D7H plus 12675419 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 118 "by cluster,freq" 22q13.1 heme oxygenase (decycling) 1 16297 rs2071747 HMOX1 3162 22 34101739 NM_002133 NP_002124 C/G D7H plus 12675419 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 118 "by cluster,freq" 22q13.1 heme oxygenase (decycling) 1 16298 rs2071747 HMOX1 3162 22 34101739 NM_002133 NP_002124 C/G D7H plus 12675419 778 SNP500CANCER PAC1 Pacific Rim (24) 42 1 118 "by cluster,freq" 22q13.1 heme oxygenase (decycling) 1 16299 rs2071762 ARHGAP8 23779 22 43578861 NM_181334 NP_851851 C/T P420L plus 12527661 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 121 "HapMap,doubleHit,submitter,freq,cluster" 22q13.31 Rho GTPase activating protein 8 16300 rs2071762 ARHGAP8 23779 22 43578861 NM_181335 NP_851852 C/T P63L plus 12527661 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 121 "HapMap,doubleHit,submitter,freq,cluster" 22q13.31 Rho GTPase activating protein 8 16301 rs2071888 TAPBP 6892 6 33380833 NM_003190 NP_003181 C/G T260R minus 2985657 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16302 rs2071888 TAPBP 6892 6 33380833 NM_003190 NP_003181 C/G T260R minus 12704082 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16303 rs2071888 TAPBP 6892 6 33380833 NM_003190 NP_003181 C/G T260R minus 24814380 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16304 rs2071888 TAPBP 6892 6 33380833 NM_172208 NP_757345 C/G T260R minus 2985657 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16305 rs2071888 TAPBP 6892 6 33380833 NM_172208 NP_757345 C/G T260R minus 12704082 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16306 rs2071888 TAPBP 6892 6 33380833 NM_172208 NP_757345 C/G T260R minus 24814380 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16307 rs2071888 TAPBP 6892 6 33380833 NM_172209 NP_757346 C/G T260R minus 2985657 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16308 rs2071888 TAPBP 6892 6 33380833 NM_172209 NP_757346 C/G T260R minus 12704082 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16309 rs2071888 TAPBP 6892 6 33380833 NM_172209 NP_757346 C/G T260R minus 24814380 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "HapMap,doubleHit,freq,cluster" 6p21.3 TAP binding protein (tapasin) 16310 rs2071915 TMEM8 58986 16 366433 NM_021259 NP_067082 C/T I310V plus 2985703 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.3 123 "by doubleHit,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 16311 rs2071915 TMEM8 58986 16 366433 NM_021259 NP_067082 C/T I310V plus 24398620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 16312 rs2071915 TMEM8 58986 16 366433 NM_021259 NP_067082 C/T I310V plus 24398620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 16313 rs2071915 TMEM8 58986 16 366433 NM_021259 NP_067082 C/T I310V plus 24398620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 16314 rs2071921 SAC 55811 1 164557143 NM_018417 NP_060887 C/T I697V plus 2985712 738 YUSUKE JBIC-ALLELE Japanese (752) 710 0.26 123 "by doubleHit,submitter,freq,cluster" 1q24 testicular soluble adenylyl cyclase 16315 rs2071921 SAC 55811 1 164557143 NM_018417 NP_060887 C/T I697V plus 23180018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1q24 testicular soluble adenylyl cyclase 16316 rs2071921 SAC 55811 1 164557143 NM_018417 NP_060887 C/T I697V plus 23180018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,submitter,freq,cluster" 1q24 testicular soluble adenylyl cyclase 16317 rs2071921 SAC 55811 1 164557143 NM_018417 NP_060887 C/T I697V plus 23180018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1q24 testicular soluble adenylyl cyclase 16318 rs2071979 PIGQ 9091 16 564115 NM_004204 NP_004195 A/G T14A plus 6900754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,doubleHit,freq,cluster" 16p13.3 "phosphatidylinositol glycan, class Q" 16319 rs2071979 PIGQ 9091 16 564115 NM_148920 NP_683721 A/G T14A plus 6900754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,doubleHit,freq,cluster" 16p13.3 "phosphatidylinositol glycan, class Q" 16320 rs2072036 TNN 63923 1 171837653 XM_040527 XP_040527 A/G A1156V minus 2985878 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.21 116 "by doubleHit,cluster" 1q23-q24 tenascin N 16321 rs2072123 DGCR2 9993 22 17401167 NM_005137 NP_005128 C/T V473A minus 2985997 738 YUSUKE JBIC-ALLELE Japanese (752) 928 0.3 123 "HapMap,freq,cluster" 22q11.21 DiGeorge syndrome critical region gene 2 16322 rs2072123 DGCR2 9993 22 17401167 NM_005137 NP_005128 C/T V473A minus 2985997 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,freq,cluster" 22q11.21 DiGeorge syndrome critical region gene 2 16323 rs2072123 DGCR2 9993 22 17401167 NM_005137 NP_005128 C/T V473A minus 24701428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,freq,cluster" 22q11.21 DiGeorge syndrome critical region gene 2 16324 rs2072123 DGCR2 9993 22 17401167 NM_005137 NP_005128 C/T V473A minus 24701428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,freq,cluster" 22q11.21 DiGeorge syndrome critical region gene 2 16325 rs2072123 DGCR2 9993 22 17401167 NM_005137 NP_005128 C/T V473A minus 24701428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 22q11.21 DiGeorge syndrome critical region gene 2 16326 rs2072174 ZNF596 169270 8 186274 NM_173539 NP_775810 G/T V470G plus 2986078 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.36 123 "by cluster,freq" 8p23.3 zinc finger protein 596 16327 rs2072174 ZNF596 169270 8 186274 NM_173539 NP_775810 G/T V470G plus 23937416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 8p23.3 zinc finger protein 596 16328 rs2072174 ZNF596 169270 8 186274 NM_173539 NP_775810 G/T V470G plus 23937416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8p23.3 zinc finger protein 596 16329 rs2072174 ZNF596 169270 8 186274 NM_173539 NP_775810 G/T V470G plus 23937416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 8p23.3 zinc finger protein 596 16330 rs2072193 PLA2G3 50487 22 29858350 NM_015715 NP_056530 C/G S322R minus 2986099 738 YUSUKE JBIC-ALLELE Japanese (752) 1284 0.33 123 "by cluster,freq" 22q11.2-q13.2 "phospholipase A2, group III" 16331 rs2072193 PLA2G3 50487 22 29858350 NM_015715 NP_056530 C/G S322R minus 24212274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 22q11.2-q13.2 "phospholipase A2, group III" 16332 rs2072193 PLA2G3 50487 22 29858350 NM_015715 NP_056530 C/G S322R minus 24212274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 22q11.2-q13.2 "phospholipase A2, group III" 16333 rs2072193 PLA2G3 50487 22 29858350 NM_015715 NP_056530 C/G S322R minus 24212274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by cluster,freq" 22q11.2-q13.2 "phospholipase A2, group III" 16334 rs2072273 PRSS21 10942 16 2811453 NM_006799 NP_006790 C/T R264Q minus 2986210 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.11 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16335 rs2072273 PRSS21 10942 16 2811453 NM_006799 NP_006790 C/T R264Q minus 2986210 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16336 rs2072273 PRSS21 10942 16 2811453 NM_144956 NP_659205 C/T R262Q minus 2986210 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.11 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16337 rs2072273 PRSS21 10942 16 2811453 NM_144956 NP_659205 C/T R262Q minus 2986210 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16338 rs2072273 PRSS21 10942 16 2811453 NM_144957 NP_659206 C/T R250Q minus 2986210 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.11 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16339 rs2072273 PRSS21 10942 16 2811453 NM_144957 NP_659206 C/T R250Q minus 2986210 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 98 "HapMap,cluster" 16p13.3 "protease, serine, 21 (testisin)" 16340 rs2072315 PCDHGA7 56108 5 140743213 NM_018920 NP_061743 A/G E188G plus 24667146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16341 rs2072315 PCDHGA7 56108 5 140743213 NM_018920 NP_061743 A/G E188G plus 24667146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16342 rs2072315 PCDHGA7 56108 5 140743213 NM_018920 NP_061743 A/G E188G plus 24667146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16343 rs2072315 PCDHGA7 56108 5 140743213 NM_032087 NP_114476 A/G E188G plus 24667146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16344 rs2072315 PCDHGA7 56108 5 140743213 NM_032087 NP_114476 A/G E188G plus 24667146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16345 rs2072315 PCDHGA7 56108 5 140743213 NM_032087 NP_114476 A/G E188G plus 24667146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 5q31 "protocadherin gamma subfamily A, 7" 16346 rs2072355 AKAP3 10566 12 4607976 NM_006422 NP_006413 A/G G118E minus 2986316 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.34 98 "HapMap,freq,cluster" 12p13.3 A kinase (PRKA) anchor protein 3 16347 rs2072355 AKAP3 10566 12 4607976 NM_006422 NP_006413 A/G G118E minus 2986316 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 98 "HapMap,freq,cluster" 12p13.3 A kinase (PRKA) anchor protein 3 16348 rs2072446 NGFR 4804 17 44942818 NM_002507 NP_002498 C/T S205L plus 2986448 738 YUSUKE JBIC-ALLELE Japanese (752) 1112 0.1 120 "by cluster,freq" 17q21-q22 "nerve growth factor receptor (TNFR superfamily, member 16)" 16349 rs2072446 NGFR 4804 17 44942818 NM_002507 NP_002498 C/T S205L plus 15356315 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 120 "by cluster,freq" 17q21-q22 "nerve growth factor receptor (TNFR superfamily, member 16)" 16350 rs2072446 NGFR 4804 17 44942818 NM_002507 NP_002498 C/T S205L plus 15356315 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 "by cluster,freq" 17q21-q22 "nerve growth factor receptor (TNFR superfamily, member 16)" 16351 rs2072446 NGFR 4804 17 44942818 NM_002507 NP_002498 C/T S205L plus 15356315 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 17q21-q22 "nerve growth factor receptor (TNFR superfamily, member 16)" 16352 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 2986504 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.34 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16353 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16354 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.2 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16355 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16356 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 901 AFFY AfAm 12 0.08 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16357 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 902 AFFY Caucasian 24 0.29 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16358 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 903 AFFY Asian 12 0.17 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16359 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 904 AFFY CEPH 12 0.08 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16360 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 7988265 905 AFFY PDpanel 48 0.15 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16361 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 24600736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16362 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 24600736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 1 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16363 rs2072493 TLR5 7100 1 2899958 NM_003268 NP_003259 A/G N592S minus 24600736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 1q41-q42 toll-like receptor 5 16364 rs2072501 ZNF71 58491 19 61824780 NM_021216 NP_067039 A/G V105I plus 2986512 738 YUSUKE JBIC-ALLELE Japanese (752) 1092 0.27 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 71 (Cos26) 16365 rs2072501 ZNF71 58491 19 61824780 NM_021216 NP_067039 A/G V105I plus 23629130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 71 (Cos26) 16366 rs2072501 ZNF71 58491 19 61824780 NM_021216 NP_067039 A/G V105I plus 23629130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 71 (Cos26) 16367 rs2072501 ZNF71 58491 19 61824780 NM_021216 NP_067039 A/G V105I plus 23629130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 71 (Cos26) 16368 rs2072525 VIT 5212 2 36947596 NM_053276 NP_444506 G/T L574I minus 2986540 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 2p22-p21 vitrin 16369 rs2072525 VIT 5212 2 36947596 NM_053276 NP_444506 G/T L574I minus 23849497 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p22-p21 vitrin 16370 rs2072525 VIT 5212 2 36947596 NM_053276 NP_444506 G/T L574I minus 23849497 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,freq,cluster" 2p22-p21 vitrin 16371 rs2072525 VIT 5212 2 36947596 NM_053276 NP_444506 G/T L574I minus 23849497 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 2p22-p21 vitrin 16372 rs2072526 VIT 5212 2 36947585 NM_053276 NP_444506 C/T K570R minus 23849491 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 2p22-p21 vitrin 16373 rs2072526 VIT 5212 2 36947585 NM_053276 NP_444506 C/T K570R minus 23849491 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 2p22-p21 vitrin 16374 rs2072526 VIT 5212 2 36947585 NM_053276 NP_444506 C/T K570R minus 23849491 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 2p22-p21 vitrin 16375 rs2072579 SART3 9733 12 107457329 NM_014706 NP_055521 C/G D23E plus 2986632 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 123 "HapMap,freq,cluster" 12q24.1 squamous cell carcinoma antigen recognised by T cells 3 16376 rs2072579 SART3 9733 12 107457329 NM_014706 NP_055521 C/G D23E plus 2986632 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.19 123 "HapMap,freq,cluster" 12q24.1 squamous cell carcinoma antigen recognised by T cells 3 16377 rs2072767 UNC93A 54346 6 167689847 NM_018974 NP_061847 A/G V292I plus 2986883 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.23 123 "by doubleHit,submitter,freq,cluster" 6q27 unc-93 homolog A (C. elegans) 16378 rs2072767 UNC93A 54346 6 167689847 NM_018974 NP_061847 A/G V292I plus 24021110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 6q27 unc-93 homolog A (C. elegans) 16379 rs2072767 UNC93A 54346 6 167689847 NM_018974 NP_061847 A/G V292I plus 24021110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 6q27 unc-93 homolog A (C. elegans) 16380 rs2072767 UNC93A 54346 6 167689847 NM_018974 NP_061847 A/G V292I plus 24021110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q27 unc-93 homolog A (C. elegans) 16381 rs2072788 MATN4 8785 20 43366435 NM_003833 NP_003824 A/C R164S minus 24695237 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16382 rs2072788 MATN4 8785 20 43366435 NM_003833 NP_003824 A/C R164S minus 24695237 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16383 rs2072788 MATN4 8785 20 43366435 NM_003833 NP_003824 A/C R164S minus 24695237 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16384 rs2072788 MATN4 8785 20 43366435 NM_030590 NP_085080 A/C R164S minus 24695237 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16385 rs2072788 MATN4 8785 20 43366435 NM_030590 NP_085080 A/C R164S minus 24695237 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16386 rs2072788 MATN4 8785 20 43366435 NM_030590 NP_085080 A/C R164S minus 24695237 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16387 rs2072788 MATN4 8785 20 43366435 NM_030592 NP_085095 A/C R164S minus 24695237 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16388 rs2072788 MATN4 8785 20 43366435 NM_030592 NP_085095 A/C R164S minus 24695237 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16389 rs2072788 MATN4 8785 20 43366435 NM_030592 NP_085095 A/C R164S minus 24695237 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16390 rs2072797 UNC84B 25777 22 37458707 NM_015374 NP_056189 C/T G671S plus 2986917 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 123 "by submitter,freq,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16391 rs2072797 UNC84B 25777 22 37458707 NM_015374 NP_056189 C/T G671S plus 24130743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16392 rs2072797 UNC84B 25777 22 37458707 NM_015374 NP_056189 C/T G671S plus 24130743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16393 rs2072797 UNC84B 25777 22 37458707 NM_015374 NP_056189 C/T G671S plus 24130743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16394 rs2072799 UNC84B 25777 22 37473037 NM_015374 NP_056189 C/T T33A plus 2986920 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.16 98 "HapMap,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16395 rs2072799 UNC84B 25777 22 37473037 NM_015374 NP_056189 C/T T33A plus 2986920 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,cluster" 22q13.1 unc-84 homolog B (C. elegans) 16396 rs2073145 ZBP1 81030 20 55624040 NM_030776 NP_110403 A/G E88K minus 2987357 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.31 123 "by doubleHit,freq,cluster" 20q13.31 Z-DNA binding protein 1 16397 rs2073145 ZBP1 81030 20 55624040 NM_030776 NP_110403 A/G E88K minus 24451923 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 20q13.31 Z-DNA binding protein 1 16398 rs2073145 ZBP1 81030 20 55624040 NM_030776 NP_110403 A/G E88K minus 24451923 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 20q13.31 Z-DNA binding protein 1 16399 rs2073145 ZBP1 81030 20 55624040 NM_030776 NP_110403 A/G E88K minus 24451923 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 20q13.31 Z-DNA binding protein 1 16400 rs2073151 OR12D2 26529 6 29472930 NM_013936 NP_039224 C/T V159I minus 2987363 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.36 120 "by doubleHit,submitter,cluster" 6p22.2-p21.31 "olfactory receptor, family 12, subfamily D, member 2" 16401 rs2073201 RUTBC2 129049 22 23618923 XM_059318 XP_059318 A/G R732K plus 2987428 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 16402 rs2073201 RUTBC2 129049 22 23618923 XM_059318 XP_059318 A/G R732K plus 24109594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 16403 rs2073201 RUTBC2 129049 22 23618923 XM_059318 XP_059318 A/G R732K plus 24109594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "HapMap,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 16404 rs2073201 RUTBC2 129049 22 23618923 XM_059318 XP_059318 A/G R732K plus 24109594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "HapMap,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 16405 rs2073214 PHACTR2 9749 6 144123302 XM_376540 XP_376540 C/T P165S plus 2987447 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 123 "by doubleHit,freq,cluster" 6q24.1 phosphatase and actin regulator 2 16406 rs2073214 PHACTR2 9749 6 144123302 XM_376540 XP_376540 C/T P165S plus 23462564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q24.1 phosphatase and actin regulator 2 16407 rs2073214 PHACTR2 9749 6 144123302 XM_376540 XP_376540 C/T P165S plus 23462564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 6q24.1 phosphatase and actin regulator 2 16408 rs2073214 PHACTR2 9749 6 144123302 XM_376540 XP_376540 C/T P165S plus 23462564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 6q24.1 phosphatase and actin regulator 2 16409 rs2073260 FBXO5 26271 6 153388655 NM_012177 NP_036309 C/G Q107E plus 2987520 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.33 123 "by submitter,freq,cluster" 6q25-q26 F-box protein 5 16410 rs2073260 FBXO5 26271 6 153388655 NM_012177 NP_036309 C/G Q107E plus 24427317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.36 123 "by submitter,freq,cluster" 6q25-q26 F-box protein 5 16411 rs2073260 FBXO5 26271 6 153388655 NM_012177 NP_036309 C/G Q107E plus 24427317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.11 123 "by submitter,freq,cluster" 6q25-q26 F-box protein 5 16412 rs2073260 FBXO5 26271 6 153388655 NM_012177 NP_036309 C/G Q107E plus 24427317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 6q25-q26 F-box protein 5 16413 rs2073342 RNASE3 6037 14 20430056 NM_002935 NP_002926 C/G T124R plus 12298829 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.27 121 "HapMap,doubleHit,freq,cluster" 14q24-q31 "ribonuclease, RNase A family, 3 (eosinophil cationic protein)" 16414 rs2073347 NIN 51199 14 50293539 NM_016350 NP_057434 C/T G1326E plus 24125824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16415 rs2073347 NIN 51199 14 50293539 NM_016350 NP_057434 C/T G1326E plus 24125824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16416 rs2073347 NIN 51199 14 50293539 NM_016350 NP_057434 C/T G1326E plus 24125824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16417 rs2073347 NIN 51199 14 50293539 NM_020921 NP_065972 C/T G1303E plus 24125824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16418 rs2073347 NIN 51199 14 50293539 NM_020921 NP_065972 C/T G1303E plus 24125824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16419 rs2073347 NIN 51199 14 50293539 NM_020921 NP_065972 C/T G1303E plus 24125824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16420 rs2073347 NIN 51199 14 50293539 NM_182944 NP_891989 C/T G1303E plus 24125824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16421 rs2073347 NIN 51199 14 50293539 NM_182944 NP_891989 C/T G1303E plus 24125824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16422 rs2073347 NIN 51199 14 50293539 NM_182944 NP_891989 C/T G1303E plus 24125824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16423 rs2073347 NIN 51199 14 50293539 NM_182945 NP_891990 C/T G1303E plus 24125824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16424 rs2073347 NIN 51199 14 50293539 NM_182945 NP_891990 C/T G1303E plus 24125824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16425 rs2073347 NIN 51199 14 50293539 NM_182945 NP_891990 C/T G1303E plus 24125824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16426 rs2073347 NIN 51199 14 50293539 NM_182946 NP_891991 C/T G1320E plus 24125824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16427 rs2073347 NIN 51199 14 50293539 NM_182946 NP_891991 C/T G1320E plus 24125824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16428 rs2073347 NIN 51199 14 50293539 NM_182946 NP_891991 C/T G1320E plus 24125824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 16429 rs2073376 PCNT2 5116 21 46676181 NM_006031 NP_006022 A/G Q2792R plus 2987661 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.28 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16430 rs2073376 PCNT2 5116 21 46676181 NM_006031 NP_006022 A/G Q2792R plus 10991096 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16431 rs2073376 PCNT2 5116 21 46676181 NM_006031 NP_006022 A/G Q2792R plus 24533411 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.43 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16432 rs2073376 PCNT2 5116 21 46676181 NM_006031 NP_006022 A/G Q2792R plus 24533411 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16433 rs2073376 PCNT2 5116 21 46676181 NM_006031 NP_006022 A/G Q2792R plus 24533411 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 16434 rs2073380 PCNT2 5116 21 46688185 NM_006031 NP_006022 A/C R3245S plus 2987665 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.45 123 "by cluster,freq" 21q22.3 pericentrin 2 (kendrin) 16435 rs2073380 PCNT2 5116 21 46688185 NM_006031 NP_006022 A/C R3245S plus 24074539 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 21q22.3 pericentrin 2 (kendrin) 16436 rs2073380 PCNT2 5116 21 46688185 NM_006031 NP_006022 A/C R3245S plus 24074539 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 21q22.3 pericentrin 2 (kendrin) 16437 rs2073380 PCNT2 5116 21 46688185 NM_006031 NP_006022 A/C R3245S plus 24074539 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 21q22.3 pericentrin 2 (kendrin) 16438 rs2073440 HDC 3067 15 48321806 NM_002112 NP_002103 A/C E644D minus 2987750 738 YUSUKE JBIC-ALLELE Japanese (752) 752 0.03 123 "by submitter,freq,cluster" 15q21-q22 histidine decarboxylase 16439 rs2073440 HDC 3067 15 48321806 NM_002112 NP_002103 A/C E644D minus 23373131 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 15q21-q22 histidine decarboxylase 16440 rs2073440 HDC 3067 15 48321806 NM_002112 NP_002103 A/C E644D minus 23373131 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by submitter,freq,cluster" 15q21-q22 histidine decarboxylase 16441 rs2073440 HDC 3067 15 48321806 NM_002112 NP_002103 A/C E644D minus 23373131 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq,cluster" 15q21-q22 histidine decarboxylase 16442 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 2987805 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.33 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16443 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 3172732 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 36 0.47 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16444 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 3172732 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16445 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 19799525 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16446 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 23587937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16447 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 23587937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16448 rs2073478 ALDH1B1 219 9 38386065 NM_000692 NP_000683 G/T R107L plus 23587937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 16449 rs2073498 RASSF1 11186 3 50344550 NM_007182 NP_009113 A/C A133S plus 2987841 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.16 98 "HapMap,freq,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 16450 rs2073498 RASSF1 11186 3 50344550 NM_170713 NP_733831 A/C A63S plus 2987841 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.16 98 "HapMap,freq,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 16451 rs2073498 RASSF1 11186 3 50344550 NM_170714 NP_733832 A/C A137S plus 2987841 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.16 98 "HapMap,freq,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 16452 rs2073498 RASSF1 11186 3 50344550 NM_170715 NP_733833 A/C A137S plus 2987841 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.16 98 "HapMap,freq,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 16453 rs2073601 SIM2 6493 21 37039178 NM_005069 NP_005060 A/C L483M plus 14439722 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 120 "HapMap,doubleHit,freq,cluster" 21q22.13 single-minded homolog 2 (Drosophila) 16454 rs2073601 SIM2 6493 21 37039178 NM_009586 NP_033664 A/C L483M plus 14439722 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 120 "HapMap,doubleHit,freq,cluster" 21q22.13 single-minded homolog 2 (Drosophila) 16455 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 2988012 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.29 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16456 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 11960719 901 AFFY AfAm 12 1 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16457 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 11960719 902 AFFY Caucasian 24 0.38 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16458 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 11960719 903 AFFY Asian 12 0.08 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16459 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 11960719 904 AFFY CEPH 10 0.4 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16460 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 11960719 905 AFFY PDpanel 46 0.35 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16461 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 16358800 693 EGP_SNPS PDR90 NIHPDR 166 0.37 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16462 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 24690828 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16463 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 24690828 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16464 rs2073618 TNFRSF11B 4982 8 120033233 NM_002546 NP_002537 C/G N3K minus 24690828 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 8q24 "tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)" 16465 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 2988120 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.39 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16466 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 2988120 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.31 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16467 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 2988120 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.18 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16468 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 2988120 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.19 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16469 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 3528159 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.24 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16470 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 23526622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16471 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 23526622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16472 rs2073711 CILP 8483 15 63281265 NM_003613 NP_003604 C/T I395T minus 23526622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 15q22 "cartilage intermediate layer protein, nucleotide pyrophosphohydrolase" 16473 rs2073713 DLEC1 9940 3 38131524 NM_005106 NP_005097 C/T R1278C plus 2988122 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,cluster" 3p22-p21.3 deleted in lung and esophageal cancer 1 16474 rs2073713 DLEC1 9940 3 38131524 NM_007337 NP_031363 C/T R1278C plus 2988122 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,cluster" 3p22-p21.3 deleted in lung and esophageal cancer 1 16475 rs2073714 SLC22A14 9389 3 38322855 NM_004803 NP_004794 A/G K112E plus 2988123 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.13 123 "by cluster,freq" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 16476 rs2073714 SLC22A14 9389 3 38322855 NM_004803 NP_004794 A/G K112E plus 23234360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 16477 rs2073714 SLC22A14 9389 3 38322855 NM_004803 NP_004794 A/G K112E plus 23234360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 16478 rs2073714 SLC22A14 9389 3 38322855 NM_004803 NP_004794 A/G K112E plus 23234360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3p21.3 "solute carrier family 22 (organic cation transporter), member 14" 16479 rs2073748 ARVCF 421 22 18343525 NM_001670 NP_001661 C/T P220L minus 2988172 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 16480 rs2073770 GNB1L 54584 22 18164095 NM_053004 NP_443730 A/C W239G plus 2988200 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,freq,cluster" 22q11.2 "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" 16481 rs2073770 GNB1L 54584 22 18164095 NM_053004 NP_443730 A/C W239G plus 24211135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 22q11.2 "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" 16482 rs2073770 GNB1L 54584 22 18164095 NM_053004 NP_443730 A/C W239G plus 24211135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 22q11.2 "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" 16483 rs2073770 GNB1L 54584 22 18164095 NM_053004 NP_443730 A/C W239G plus 24211135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,freq,cluster" 22q11.2 "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" 16484 rs2073852 ATBF1 463 16 71550168 NM_006885 NP_008816 C/G E460Q minus 2988330 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.22 123 "HapMap,freq,cluster" 16q22.3-q23.1 AT-binding transcription factor 1 16485 rs2073852 ATBF1 463 16 71550168 NM_006885 NP_008816 C/G E460Q minus 2988330 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 16q22.3-q23.1 AT-binding transcription factor 1 16486 rs2073852 ATBF1 463 16 71550168 NM_006885 NP_008816 C/G E460Q minus 24112511 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "HapMap,freq,cluster" 16q22.3-q23.1 AT-binding transcription factor 1 16487 rs2073852 ATBF1 463 16 71550168 NM_006885 NP_008816 C/G E460Q minus 24112511 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 16q22.3-q23.1 AT-binding transcription factor 1 16488 rs2073852 ATBF1 463 16 71550168 NM_006885 NP_008816 C/G E460Q minus 24112511 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "HapMap,freq,cluster" 16q22.3-q23.1 AT-binding transcription factor 1 16489 rs2073924 GBGT1 26301 9 133067296 NM_021996 NP_068836 C/T L20F minus 2988431 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13-q34.3 "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" 16490 rs2073924 GBGT1 26301 9 133067296 NM_021996 NP_068836 C/T L20F minus 24073144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13-q34.3 "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" 16491 rs2073924 GBGT1 26301 9 133067296 NM_021996 NP_068836 C/T L20F minus 24073144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13-q34.3 "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" 16492 rs2073924 GBGT1 26301 9 133067296 NM_021996 NP_068836 C/T L20F minus 24073144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 9q34.13-q34.3 "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" 16493 rs2074078 ZNF154 7710 19 62905764 NM_003444 NP_003435 A/C G122V plus 2988628 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 154 (pHZ-92) 16494 rs2074078 ZNF154 7710 19 62905764 NM_003444 NP_003435 A/C G122V plus 24076048 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 154 (pHZ-92) 16495 rs2074078 ZNF154 7710 19 62905764 NM_003444 NP_003435 A/C G122V plus 24076048 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 154 (pHZ-92) 16496 rs2074078 ZNF154 7710 19 62905764 NM_003444 NP_003435 A/C G122V plus 24076048 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 19q13.4 zinc finger protein 154 (pHZ-92) 16497 rs2074158 LGP2 79132 17 37510689 NM_024119 NP_077024 A/G Q425R minus 23630049 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 17q21.31 likely ortholog of mouse D11lgp2 16498 rs2074158 LGP2 79132 17 37510689 NM_024119 NP_077024 A/G Q425R minus 23630049 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 17q21.31 likely ortholog of mouse D11lgp2 16499 rs2074158 LGP2 79132 17 37510689 NM_024119 NP_077024 A/G Q425R minus 23630049 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 17q21.31 likely ortholog of mouse D11lgp2 16500 rs2074160 LGP2 79132 17 37509338 NM_024119 NP_077024 A/G R523Q minus 2988736 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.13 119 "HapMap,freq,cluster" 17q21.31 likely ortholog of mouse D11lgp2 16501 rs2074160 LGP2 79132 17 37509338 NM_024119 NP_077024 A/G R523Q minus 14302546 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 119 "HapMap,freq,cluster" 17q21.31 likely ortholog of mouse D11lgp2 16502 rs2074180 IMP5 162540 17 41278281 NM_175882 NP_787078 G/T H77N minus 2988758 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,cluster" 17q21.31 intramembrane protease 5 16503 rs2074379 LAK 80216 4 113710503 NM_025144 NP_079420 A/G M732I plus 16993737 1303 SEQUENOM CEPH CEPH (92) 92 0.02 123 "by doubleHit,submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16504 rs2074379 LAK 80216 4 113710503 NM_025144 NP_079420 A/G M732I plus 23721700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16505 rs2074379 LAK 80216 4 113710503 NM_025144 NP_079420 A/G M732I plus 23721700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16506 rs2074379 LAK 80216 4 113710503 NM_025144 NP_079420 A/G M732I plus 23721700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16507 rs2074380 LAK 80216 4 113710915 NM_025144 NP_079420 A/G G870S plus 2989003 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16508 rs2074380 LAK 80216 4 113710915 NM_025144 NP_079420 A/G G870S plus 24171246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16509 rs2074380 LAK 80216 4 113710915 NM_025144 NP_079420 A/G G870S plus 24171246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16510 rs2074380 LAK 80216 4 113710915 NM_025144 NP_079420 A/G G870S plus 24171246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16511 rs2074381 LAK 80216 4 113711053 NM_025144 NP_079420 A/G N916D plus 2989004 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.07 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16512 rs2074381 LAK 80216 4 113711053 NM_025144 NP_079420 A/G N916D plus 24171248 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16513 rs2074381 LAK 80216 4 113711053 NM_025144 NP_079420 A/G N916D plus 24171248 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16514 rs2074381 LAK 80216 4 113711053 NM_025144 NP_079420 A/G N916D plus 24171248 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 16515 rs2074388 LAK 80216 4 113710001 NM_025144 NP_079420 A/G G565D plus 22202064 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16516 rs2074388 LAK 80216 4 113710001 NM_025144 NP_079420 A/G G565D plus 24171239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16517 rs2074388 LAK 80216 4 113710001 NM_025144 NP_079420 A/G G565D plus 24171239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16518 rs2074388 LAK 80216 4 113710001 NM_025144 NP_079420 A/G G565D plus 24171239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 4q26 lymphocyte alpha-kinase 16519 rs2074479 RNF39 80352 6 30148988 NM_025236 NP_079512 C/T S203P minus 2989142 738 YUSUKE JBIC-ALLELE Japanese (752) 1112 0.29 118 "by doubleHit,cluster" 6p21.3 ring finger protein 39 16520 rs2074479 RNF39 80352 6 30148988 NM_170769 NP_739575 C/T S203P minus 2989142 738 YUSUKE JBIC-ALLELE Japanese (752) 1112 0.29 118 "by doubleHit,cluster" 6p21.3 ring finger protein 39 16521 rs2074506 VARS2L 57176 6 30998462 XM_373419 XP_373419 A/C V680L minus 2989178 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.2 123 "by doubleHit,freq,cluster" 6p21 valyl-tRNA synthetase 2-like 16522 rs2074506 VARS2L 57176 6 30998462 XM_373419 XP_373419 A/C V680L minus 24305585 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6p21 valyl-tRNA synthetase 2-like 16523 rs2074506 VARS2L 57176 6 30998462 XM_373419 XP_373419 A/C V680L minus 24305585 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6p21 valyl-tRNA synthetase 2-like 16524 rs2074506 VARS2L 57176 6 30998462 XM_373419 XP_373419 A/C V680L minus 24305585 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p21 valyl-tRNA synthetase 2-like 16525 rs2074654 RAMP3 10268 7 44990255 NM_005856 NP_005847 A/G W56R minus 2989399 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.11 123 "by cluster,freq" 7p13-p12 receptor (calcitonin) activity modifying protein 3 16526 rs2074654 RAMP3 10268 7 44990255 NM_005856 NP_005847 A/G W56R minus 24055392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7p13-p12 receptor (calcitonin) activity modifying protein 3 16527 rs2074654 RAMP3 10268 7 44990255 NM_005856 NP_005847 A/G W56R minus 24055392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 7p13-p12 receptor (calcitonin) activity modifying protein 3 16528 rs2074654 RAMP3 10268 7 44990255 NM_005856 NP_005847 A/G W56R minus 24055392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by cluster,freq" 7p13-p12 receptor (calcitonin) activity modifying protein 3 16529 rs2074734 PLA2G3 50487 22 29860549 NM_015715 NP_056530 C/G E116Q minus 8002619 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16530 rs2074734 PLA2G3 50487 22 29860549 NM_015715 NP_056530 C/G E116Q minus 24212280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16531 rs2074734 PLA2G3 50487 22 29860549 NM_015715 NP_056530 C/G E116Q minus 24212280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16532 rs2074734 PLA2G3 50487 22 29860549 NM_015715 NP_056530 C/G E116Q minus 24212280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16533 rs2074735 PLA2G3 50487 22 29860426 NM_015715 NP_056530 C/G L157V minus 2989499 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1484 0.34 98 "HapMap,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16534 rs2074735 PLA2G3 50487 22 29860426 NM_015715 NP_056530 C/G L157V minus 3179448 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 98 "HapMap,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 16535 rs2074876 MYH13 8735 17 10164422 NM_003802 NP_003793 G/T D1076E plus 24122223 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16536 rs2074876 MYH13 8735 17 10164422 NM_003802 NP_003793 G/T D1076E plus 24122223 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16537 rs2074876 MYH13 8735 17 10164422 NM_003802 NP_003793 G/T D1076E plus 24122223 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16538 rs2074877 MYH13 8735 17 10164439 NM_003802 NP_003793 C/T M1071V plus 24122230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16539 rs2074877 MYH13 8735 17 10164439 NM_003802 NP_003793 C/T M1071V plus 24122230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16540 rs2074877 MYH13 8735 17 10164439 NM_003802 NP_003793 C/T M1071V plus 24122230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 16541 rs2074890 TRIM16 10626 17 15495286 NM_006470 NP_006461 G/T E121D minus 2989730 738 YUSUKE JBIC-ALLELE Japanese (752) 888 0.22 123 "HapMap,submitter,freq,cluster" 17p11.2 tripartite motif-containing 16 16542 rs2074890 TRIM16 10626 17 15495286 NM_006470 NP_006461 G/T E121D minus 2989730 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,submitter,freq,cluster" 17p11.2 tripartite motif-containing 16 16543 rs2074890 TRIM16 10626 17 15495286 NM_006470 NP_006461 G/T E121D minus 23639313 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 17p11.2 tripartite motif-containing 16 16544 rs2074890 TRIM16 10626 17 15495286 NM_006470 NP_006461 G/T E121D minus 23639313 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "HapMap,submitter,freq,cluster" 17p11.2 tripartite motif-containing 16 16545 rs2074890 TRIM16 10626 17 15495286 NM_006470 NP_006461 G/T E121D minus 23639313 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 17p11.2 tripartite motif-containing 16 16546 rs2074912 PCDHGC5 56097 5 140850700 NM_018929 NP_061752 C/T D570G minus 2989754 738 YUSUKE JBIC-ALLELE Japanese (752) 1086 0.15 120 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily C, 5" 16547 rs2074912 PCDHGC5 56097 5 140850700 NM_018929 NP_061752 C/T D570G minus 3181058 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 120 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily C, 5" 16548 rs2074912 PCDHGC5 56097 5 140850700 NM_032407 NP_115783 C/T D570G minus 2989754 738 YUSUKE JBIC-ALLELE Japanese (752) 1086 0.15 120 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily C, 5" 16549 rs2074912 PCDHGC5 56097 5 140850700 NM_032407 NP_115783 C/T D570G minus 3181058 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 120 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily C, 5" 16550 rs2075078 HIMAP2 26157 7 149827504 NM_015660 NP_056475 C/T H161R minus 2989998 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.2 121 "by doubleHit,cluster" 7q36.1 immunity associated protein 2 16551 rs2075221 CLECSF13 165530 2 70955866 NM_173535 NP_775806 C/T R101Q plus 2990196 738 YUSUKE JBIC-ALLELE Japanese (752) 1122 0.39 123 "HapMap,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 16552 rs2075221 CLECSF13 165530 2 70955866 NM_173535 NP_775806 C/T R101Q plus 2990196 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 16553 rs2075221 CLECSF13 165530 2 70955866 NM_173535 NP_775806 C/T R101Q plus 23875525 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 16554 rs2075221 CLECSF13 165530 2 70955866 NM_173535 NP_775806 C/T R101Q plus 23875525 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 16555 rs2075221 CLECSF13 165530 2 70955866 NM_173535 NP_775806 C/T R101Q plus 23875525 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,freq,cluster" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 16556 rs2075252 LRP2 4036 2 169836492 NM_004525 NP_004516 A/G K4094E minus 2990248 738 YUSUKE JBIC-ALLELE Japanese (752) 1080 0.44 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 16557 rs2075252 LRP2 4036 2 169836492 NM_004525 NP_004516 A/G K4094E minus 23903223 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 16558 rs2075252 LRP2 4036 2 169836492 NM_004525 NP_004516 A/G K4094E minus 23903223 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 16559 rs2075252 LRP2 4036 2 169836492 NM_004525 NP_004516 A/G K4094E minus 23903223 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 16560 rs2075322 DDX11 1663 12 31141128 NM_030653 NP_085911 C/G Q567E plus 2990346 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.1 120 "by doubleHit,cluster" 12p11 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)" 16561 rs2075352 TATDN2 9797 3 10286939 XM_376203 XP_376203 C/T P358L plus 2990394 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.3 123 "by cluster,freq" 3p25.3 TatD DNase domain containing 1 16562 rs2075352 TATDN2 9797 3 10286939 XM_376203 XP_376203 C/T P358L plus 2990394 1303 SEQUENOM CEPH CEPH (92) 92 0.04 123 "by cluster,freq" 3p25.3 TatD DNase domain containing 1 16563 rs2075352 TATDN2 9797 3 10286939 XM_376203 XP_376203 C/T P358L plus 23656303 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 3p25.3 TatD DNase domain containing 1 16564 rs2075352 TATDN2 9797 3 10286939 XM_376203 XP_376203 C/T P358L plus 23656303 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by cluster,freq" 3p25.3 TatD DNase domain containing 1 16565 rs2075352 TATDN2 9797 3 10286939 XM_376203 XP_376203 C/T P358L plus 23656303 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by cluster,freq" 3p25.3 TatD DNase domain containing 1 16566 rs2075387 RBM19 9904 12 112745216 NM_016196 NP_057280 A/G R921Q minus 2990439 738 YUSUKE JBIC-ALLELE Japanese (752) 1426 0.18 123 "by submitter,freq,cluster" 12q24.21 RNA binding motif protein 19 16567 rs2075387 RBM19 9904 12 112745216 NM_016196 NP_057280 A/G R921Q minus 23437105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq,cluster" 12q24.21 RNA binding motif protein 19 16568 rs2075387 RBM19 9904 12 112745216 NM_016196 NP_057280 A/G R921Q minus 23437105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq,cluster" 12q24.21 RNA binding motif protein 19 16569 rs2075387 RBM19 9904 12 112745216 NM_016196 NP_057280 A/G R921Q minus 23437105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq,cluster" 12q24.21 RNA binding motif protein 19 16570 rs2075520 ZP2 7783 16 21130173 NM_003460 NP_003451 A/C G36V plus 23960310 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by submitter,freq,cluster" 16p12 zona pellucida glycoprotein 2 (sperm receptor) 16571 rs2075520 ZP2 7783 16 21130173 NM_003460 NP_003451 A/C G36V plus 23960310 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by submitter,freq,cluster" 16p12 zona pellucida glycoprotein 2 (sperm receptor) 16572 rs2075520 ZP2 7783 16 21130173 NM_003460 NP_003451 A/C G36V plus 23960310 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 16p12 zona pellucida glycoprotein 2 (sperm receptor) 16573 rs2075598 GALIG 81625 14 54674106 NM_194327 NP_919308 C/T R88W plus 2990727 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.05 116 "HapMap,submitter,cluster" 14q21-q22 galectin-3 internal gene 16574 rs2075598 GALIG 81625 14 54674106 NM_194327 NP_919308 C/T R88W plus 10731056 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 116 "HapMap,submitter,cluster" 14q21-q22 galectin-3 internal gene 16575 rs2075662 COL15A1 1306 9 98827789 NM_001855 NP_001846 A/G R163H plus 2990817 738 YUSUKE JBIC-ALLELE Japanese (752) 1286 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 16576 rs2075662 COL15A1 1306 9 98827789 NM_001855 NP_001846 A/G R163H plus 6538731 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 16577 rs2075662 COL15A1 1306 9 98827789 NM_001855 NP_001846 A/G R163H plus 23503487 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 16578 rs2075662 COL15A1 1306 9 98827789 NM_001855 NP_001846 A/G R163H plus 23503487 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,submitter,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 16579 rs2075662 COL15A1 1306 9 98827789 NM_001855 NP_001846 A/G R163H plus 23503487 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 16580 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 2990938 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.35 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16581 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 4328474 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16582 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 4328474 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.11 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16583 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 24035318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16584 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 24035318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16585 rs2075761 FGL2 10875 7 76473604 NM_006682 NP_006673 A/G G53E minus 24035318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 7q11.23 fibrinogen-like 2 16586 rs2075800 HSPA1L 3305 6 31885925 NM_005527 NP_005518 A/G E602K minus 2991007 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.47 120 "HapMap,freq,cluster" 6p21.3 heat shock 70kDa protein 1-like 16587 rs2075800 HSPA1L 3305 6 31885925 NM_005527 NP_005518 A/G E602K minus 4027175 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 120 "HapMap,freq,cluster" 6p21.3 heat shock 70kDa protein 1-like 16588 rs2075803 SIGLEC9 27180 19 56320341 NM_014441 NP_055256 A/G K100E plus 2991014 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.41 sialic acid binding Ig-like lectin 9 16589 rs2075803 SIGLEC9 27180 19 56320341 NM_014441 NP_055256 A/G K100E plus 3608040 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 121 "HapMap,doubleHit,submitter,freq,cluster" 19q13.41 sialic acid binding Ig-like lectin 9 16590 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 2991036 738 YUSUKE JBIC-ALLELE Japanese (752) 1228 0.45 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16591 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 7987180 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.31 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16592 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 7987180 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16593 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 7987180 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.33 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16594 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 23453667 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16595 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 23453667 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16596 rs2075820 CARD4 10392 7 30265477 NM_006092 NP_006083 A/G E266K minus 23453667 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by submitter,freq,cluster" 7p15-p14 "caspase recruitment domain family, member 4" 16597 rs2075853 MUC5B 4587 11 1204034 XM_039877 XP_039877 C/T R51W plus 2991081 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.37 120 "by doubleHit,cluster" 11p15 "mucin 5, subtype B, tracheobronchial" 16598 rs2075939 NCF4 4689 22 35596382 NM_013416 NP_038202 C/T L272P plus 8007253 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 119 "HapMap,freq,cluster" 22q13.1 "neutrophil cytosolic factor 4, 40kDa" 16599 rs2076051 BPIL2 254240 22 31156363 NM_174932 NP_777592 A/G V269A plus 24122550 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 16600 rs2076051 BPIL2 254240 22 31156363 NM_174932 NP_777592 A/G V269A plus 24122550 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 16601 rs2076051 BPIL2 254240 22 31156363 NM_174932 NP_777592 A/G V269A plus 24122550 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 16602 rs2076101 APOBEC3F 200316 22 37770054 NM_145298 NP_660341 A/G V231I plus 2991419 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.26 123 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 16603 rs2076101 APOBEC3F 200316 22 37770054 NM_145298 NP_660341 A/G V231I plus 7998159 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 16604 rs2076101 APOBEC3F 200316 22 37770054 NM_145298 NP_660341 A/G V231I plus 24533547 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 16605 rs2076101 APOBEC3F 200316 22 37770054 NM_145298 NP_660341 A/G V231I plus 24533547 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 16606 rs2076101 APOBEC3F 200316 22 37770054 NM_145298 NP_660341 A/G V231I plus 24533547 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.29 123 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F" 16607 rs2076109 APOBEC3B 9582 22 37706326 NM_004900 NP_004891 A/G K62E plus 16928004 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 120 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B" 16608 rs2076190 MAP7 9053 6 136723865 NM_003980 NP_003971 A/G R558W plus 3177281 619 WICVAR MITOGPOP6 CORIELL Mixed 20 0.1 102 "by cluster,freq" 6q23.2 microtubule-associated protein 7 16609 rs2076222 LAMB3 3914 1 206180324 NM_000228 NP_000219 G/T A926D plus 2991570 738 YUSUKE JBIC-ALLELE Japanese (752) 1428 0.27 123 "by submitter,freq,cluster" 1q32 "laminin, beta 3" 16610 rs2076222 LAMB3 3914 1 206180324 NM_000228 NP_000219 G/T A926D plus 24155055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 1q32 "laminin, beta 3" 16611 rs2076222 LAMB3 3914 1 206180324 NM_000228 NP_000219 G/T A926D plus 24155055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by submitter,freq,cluster" 1q32 "laminin, beta 3" 16612 rs2076222 LAMB3 3914 1 206180324 NM_000228 NP_000219 G/T A926D plus 24155055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 1q32 "laminin, beta 3" 16613 rs2076299 DSP 1832 6 7525957 NM_004415 NP_004406 A/G Y1512C plus 2991665 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.3 123 "by doubleHit,submitter,freq,cluster" 6p24 desmoplakin 16614 rs2076299 DSP 1832 6 7525957 NM_004415 NP_004406 A/G Y1512C plus 16338482 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.2 123 "by doubleHit,submitter,freq,cluster" 6p24 desmoplakin 16615 rs2076299 DSP 1832 6 7525957 NM_004415 NP_004406 A/G Y1512C plus 23917472 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 6p24 desmoplakin 16616 rs2076299 DSP 1832 6 7525957 NM_004415 NP_004406 A/G Y1512C plus 23917472 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,submitter,freq,cluster" 6p24 desmoplakin 16617 rs2076299 DSP 1832 6 7525957 NM_004415 NP_004406 A/G Y1512C plus 23917472 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 6p24 desmoplakin 16618 rs2076349 LAMB3 3914 1 206188625 NM_000228 NP_000219 C/T V527M plus 2991731 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.42 123 "by doubleHit,freq,cluster" 1q32 "laminin, beta 3" 16619 rs2076349 LAMB3 3914 1 206188625 NM_000228 NP_000219 C/T V527M plus 23692332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 1q32 "laminin, beta 3" 16620 rs2076349 LAMB3 3914 1 206188625 NM_000228 NP_000219 C/T V527M plus 23692332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 1q32 "laminin, beta 3" 16621 rs2076349 LAMB3 3914 1 206188625 NM_000228 NP_000219 C/T V527M plus 23692332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 1q32 "laminin, beta 3" 16622 rs2076371 SLC16A8 23539 22 36799196 NM_013356 NP_037488 A/G V405A plus 2991757 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.14 121 "HapMap,doubleHit,freq,cluster" 22q12.3-q13.2 "solute carrier 16 (monocarboxylic acid transporters), member 8" 16623 rs2076371 SLC16A8 23539 22 36799196 NM_013356 NP_037488 A/G V405A plus 7997833 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,freq,cluster" 22q12.3-q13.2 "solute carrier 16 (monocarboxylic acid transporters), member 8" 16624 rs2076405 TGM6 343641 20 2323262 NM_198994 NP_945345 C/T M58V minus 2991802 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.42 123 "by doubleHit,submitter,freq,cluster" 20p13 transglutaminase y 16625 rs2076405 TGM6 343641 20 2323262 NM_198994 NP_945345 C/T M58V minus 24067102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20p13 transglutaminase y 16626 rs2076405 TGM6 343641 20 2323262 NM_198994 NP_945345 C/T M58V minus 24067102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 20p13 transglutaminase y 16627 rs2076405 TGM6 343641 20 2323262 NM_198994 NP_945345 C/T M58V minus 24067102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 20p13 transglutaminase y 16628 rs2076472 APOBEC2 10930 6 41137320 NM_006789 NP_006780 C/T I136T plus 2991883 901 AFFY AfAm 12 1 121 "by cluster,freq" 6p21 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2" 16629 rs2076472 APOBEC2 10930 6 41137320 NM_006789 NP_006780 C/T I136T plus 2991883 902 AFFY Caucasian 22 0.23 121 "by cluster,freq" 6p21 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2" 16630 rs2076472 APOBEC2 10930 6 41137320 NM_006789 NP_006780 C/T I136T plus 2991883 903 AFFY Asian 6 0.5 121 "by cluster,freq" 6p21 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2" 16631 rs2076472 APOBEC2 10930 6 41137320 NM_006789 NP_006780 C/T I136T plus 2991883 904 AFFY CEPH 12 0.42 121 "by cluster,freq" 6p21 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2" 16632 rs2076472 APOBEC2 10930 6 41137320 NM_006789 NP_006780 C/T I136T plus 2991883 905 AFFY PDpanel 48 0.19 121 "by cluster,freq" 6p21 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2" 16633 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 14869541 901 AFFY AfAm 8 0.13 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16634 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 14869541 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16635 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 14869541 903 AFFY Asian 10 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16636 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 14869541 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16637 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 14869541 905 AFFY PDpanel 46 0.04 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16638 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 23299384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16639 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 23299384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16640 rs2076484 UBD 10537 6 29631982 NM_006398 NP_006389 C/T L51S minus 23299384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16641 rs2076485 UBD 10537 6 29631931 NM_006398 NP_006389 C/T I68T minus 24341524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 6p21.3 ubiquitin D 16642 rs2076485 UBD 10537 6 29631931 NM_006398 NP_006389 C/T I68T minus 24341524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 6p21.3 ubiquitin D 16643 rs2076485 UBD 10537 6 29631931 NM_006398 NP_006389 C/T I68T minus 24341524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 6p21.3 ubiquitin D 16644 rs2076486 UBD 10537 6 29631851 NM_006398 NP_006389 C/T S95P minus 23299353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16645 rs2076486 UBD 10537 6 29631851 NM_006398 NP_006389 C/T S95P minus 23299353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16646 rs2076486 UBD 10537 6 29631851 NM_006398 NP_006389 C/T S95P minus 23299353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16647 rs2076487 UBD 10537 6 29631838 NM_006398 NP_006389 C/G A99G minus 23299342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16648 rs2076487 UBD 10537 6 29631838 NM_006398 NP_006389 C/G A99G minus 23299342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16649 rs2076487 UBD 10537 6 29631838 NM_006398 NP_006389 C/G A99G minus 23299342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 16650 rs2076506 PWWP1 154150 6 22678043 NM_138574 NP_612641 C/T T87M plus 24007208 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 6p22.2 PWWP domain containing 1 16651 rs2076506 PWWP1 154150 6 22678043 NM_138574 NP_612641 C/T T87M plus 24007208 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 6p22.2 PWWP domain containing 1 16652 rs2076506 PWWP1 154150 6 22678043 NM_138574 NP_612641 C/T T87M plus 24007208 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 6p22.2 PWWP domain containing 1 16653 rs2076523 BTNL2 56244 6 32478813 NM_019602 NP_062548 A/G K196E minus 2991948 738 YUSUKE JBIC-ALLELE Japanese (752) 920 0.19 123 "by doubleHit,submitter,freq,cluster" 6p21.3 butyrophilin-like 2 (MHC class II associated) 16654 rs2076523 BTNL2 56244 6 32478813 NM_019602 NP_062548 A/G K196E minus 24650865 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,submitter,freq,cluster" 6p21.3 butyrophilin-like 2 (MHC class II associated) 16655 rs2076523 BTNL2 56244 6 32478813 NM_019602 NP_062548 A/G K196E minus 24650865 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,submitter,freq,cluster" 6p21.3 butyrophilin-like 2 (MHC class II associated) 16656 rs2076523 BTNL2 56244 6 32478813 NM_019602 NP_062548 A/G K196E minus 24650865 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6p21.3 butyrophilin-like 2 (MHC class II associated) 16657 rs2076530 BTNL2 56244 6 32471794 NM_019602 NP_062548 A/G S360G minus 2991955 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 121 "by doubleHit,cluster" 6p21.3 butyrophilin-like 2 (MHC class II associated) 16658 rs2076559 ENTPD6 955 20 25135213 NM_001247 NP_001238 A/G S14N plus 2991988 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.38 123 "by cluster,freq" 20p11.2-p11.22 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 16659 rs2076559 ENTPD6 955 20 25135213 NM_001247 NP_001238 A/G S14N plus 24615042 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 20p11.2-p11.22 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 16660 rs2076559 ENTPD6 955 20 25135213 NM_001247 NP_001238 A/G S14N plus 24615042 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 20p11.2-p11.22 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 16661 rs2076559 ENTPD6 955 20 25135213 NM_001247 NP_001238 A/G S14N plus 24615042 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 20p11.2-p11.22 ectonucleoside triphosphate diphosphohydrolase 6 (putative function) 16662 rs2076671 APOL5 80831 22 34447430 NM_030642 NP_085145 C/T T272M plus 2992133 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.45 114 "HapMap,doubleHit,freq,cluster" 22q13.1 "apolipoprotein L, 5" 16663 rs2076671 APOL5 80831 22 34447430 NM_030642 NP_085145 C/T T272M plus 8006495 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 114 "HapMap,doubleHit,freq,cluster" 22q13.1 "apolipoprotein L, 5" 16664 rs2076672 APOL5 80831 22 34447583 NM_030642 NP_085145 C/T T323M plus 2992134 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 98 "HapMap,freq,cluster" 22q13.1 "apolipoprotein L, 5" 16665 rs2076673 APOL5 80831 22 34449360 NM_030642 NP_085145 C/G S406C plus 2992135 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.44 121 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 5" 16666 rs2076673 APOL5 80831 22 34449360 NM_030642 NP_085145 C/G S406C plus 8006497 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 121 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 5" 16667 rs2076742 ATP10A 57194 15 23477291 NM_024490 NP_077816 C/G W1172C minus 2992226 524 LDN AUTISM USA (autistic probands) 460 0.1 123 "by doubleHit,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 16668 rs2076742 ATP10A 57194 15 23477291 NM_024490 NP_077816 C/G W1172C minus 24186754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 16669 rs2076742 ATP10A 57194 15 23477291 NM_024490 NP_077816 C/G W1172C minus 24186754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 16670 rs2076742 ATP10A 57194 15 23477291 NM_024490 NP_077816 C/G W1172C minus 24186754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 15q11-q13 "ATPase, Class V, type 10A" 16671 rs2076744 ATP10A 57194 15 23477272 NM_024490 NP_077816 A/G A1179T minus 2992228 524 LDN AUTISM USA (autistic probands) 460 0.15 120 "by cluster,freq" 15q11-q13 "ATPase, Class V, type 10A" 16672 rs2076745 ATP10A 57194 15 23477245 NM_024490 NP_077816 A/G I1188V minus 2992229 524 LDN AUTISM USA (autistic probands) 460 0.01 96 by freq 15q11-q13 "ATPase, Class V, type 10A" 16673 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 2992857 901 AFFY AfAm 12 0.17 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16674 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 2992857 902 AFFY Caucasian 24 0.13 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16675 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 2992857 903 AFFY Asian 12 0.08 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16676 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 2992857 904 AFFY CEPH 12 0.25 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16677 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 2992857 905 AFFY PDpanel 48 0.13 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16678 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 23661902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16679 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 23661902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16680 rs2077268 RYR3 6263 15 31661043 NM_001036 NP_001027 C/T V494I minus 23661902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 16681 rs2080391 CD207 50489 2 70969925 NM_015717 NP_056532 C/G A300P plus 2996336 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 2p13 "CD207 antigen, langerin" 16682 rs2082416 SYCN 342898 19 44386404 XM_371167 XP_371167 A/C L111M minus 2998603 638 TSC-CSHL TSC_42_AA TSC African American (42) 80 1 96 HapMap 19q13.2 syncollin 16683 rs2082416 SYCN 342898 19 44386404 XM_371167 XP_371167 A/C L111M minus 2998603 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 1 96 HapMap 19q13.2 syncollin 16684 rs2082416 SYCN 342898 19 44386404 XM_371167 XP_371167 A/C L111M minus 2998603 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.01 96 HapMap 19q13.2 syncollin 16685 rs2082416 SYCN 342898 19 44386404 XM_371167 XP_371167 A/C L111M minus 2998603 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 96 HapMap 19q13.2 syncollin 16686 rs2083837 HOXC8 3224 12 52689651 NM_022658 NP_073149 A/C A106S minus 3000178 885 TSC-CSHL HapMap-CEPH-30-trios 100 1 111 HapMap 12q13.3 homeo box C8 16687 rs2086310 ADAMTS16 170690 5 5199335 NM_139056 NP_620687 C/G P90A minus 23882749 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 16688 rs2086310 ADAMTS16 170690 5 5199335 NM_139056 NP_620687 C/G P90A minus 23882749 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 16689 rs2086310 ADAMTS16 170690 5 5199335 NM_139056 NP_620687 C/G P90A minus 23882749 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 16690 rs2089891 PPP1R15B 84919 1 201111109 NM_032833 NP_116222 A/G E363G minus 24256902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 15B" 16691 rs2089891 PPP1R15B 84919 1 201111109 NM_032833 NP_116222 A/G E363G minus 24256902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 15B" 16692 rs2089891 PPP1R15B 84919 1 201111109 NM_032833 NP_116222 A/G E363G minus 24256902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 15B" 16693 rs2098386 CEBPZ 10153 2 37367683 NM_005760 NP_005751 A/G V102I minus 3016245 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,submitter,freq,cluster" 2p22.3 CCAAT/enhancer binding protein zeta 16694 rs2098386 CEBPZ 10153 2 37367683 NM_005760 NP_005751 A/G V102I minus 24648522 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 2p22.3 CCAAT/enhancer binding protein zeta 16695 rs2098386 CEBPZ 10153 2 37367683 NM_005760 NP_005751 A/G V102I minus 24648522 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,submitter,freq,cluster" 2p22.3 CCAAT/enhancer binding protein zeta 16696 rs2098386 CEBPZ 10153 2 37367683 NM_005760 NP_005751 A/G V102I minus 24648522 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,submitter,freq,cluster" 2p22.3 CCAAT/enhancer binding protein zeta 16697 rs2101919 NID2 22795 14 51590118 NM_007361 NP_031387 A/G G453D minus 3020180 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 16698 rs2101919 NID2 22795 14 51590118 NM_007361 NP_031387 A/G G453D minus 3220037 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 16699 rs2101919 NID2 22795 14 51590118 NM_007361 NP_031387 A/G G453D minus 24140566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 16700 rs2101919 NID2 22795 14 51590118 NM_007361 NP_031387 A/G G453D minus 24140566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 16701 rs2101919 NID2 22795 14 51590118 NM_007361 NP_031387 A/G G453D minus 24140566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 16702 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 3023389 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16703 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 3210624 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16704 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 17247672 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16705 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 24058053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16706 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 24058053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16707 rs2104772 TNC 3371 9 114888339 NM_002160 NP_002151 A/T I1677L minus 24058053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 16708 rs2104978 TEP1 7011 14 19906873 NM_007110 NP_009041 A/G H2562R minus 3023623 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,doubleHit,freq" 14q11.2 telomerase-associated protein 1 16709 rs2104978 TEP1 7011 14 19906873 NM_007110 NP_009041 A/G H2562R minus 3172667 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.07 123 "HapMap,doubleHit,freq" 14q11.2 telomerase-associated protein 1 16710 rs2104978 TEP1 7011 14 19906873 NM_007110 NP_009041 A/G H2562R minus 24720763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq" 14q11.2 telomerase-associated protein 1 16711 rs2104978 TEP1 7011 14 19906873 NM_007110 NP_009041 A/G H2562R minus 24720763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq" 14q11.2 telomerase-associated protein 1 16712 rs2104978 TEP1 7011 14 19906873 NM_007110 NP_009041 A/G H2562R minus 24720763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq" 14q11.2 telomerase-associated protein 1 16713 rs2105117 SPRL5A 254910 1 149297202 NM_178438 NP_848525 C/T C40Y minus 3221175 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.26 123 "by doubleHit,freq,cluster" 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 16714 rs2105117 SPRL5A 254910 1 149297202 NM_178438 NP_848525 C/T C40Y minus 24276218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 16715 rs2105117 SPRL5A 254910 1 149297202 NM_178438 NP_848525 C/T C40Y minus 24276218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.35 123 "by doubleHit,freq,cluster" 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 16716 rs2105117 SPRL5A 254910 1 149297202 NM_178438 NP_848525 C/T C40Y minus 24276218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "by doubleHit,freq,cluster" 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 16717 rs2106673 MAN2A2 4122 15 89253599 NM_006122 NP_006113 C/T Q412R minus 3025670 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 15q26.1 "mannosidase, alpha, class 2A, member 2" 16718 rs2106673 MAN2A2 4122 15 89253599 NM_006122 NP_006113 C/T Q412R minus 23736649 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 15q26.1 "mannosidase, alpha, class 2A, member 2" 16719 rs2106673 MAN2A2 4122 15 89253599 NM_006122 NP_006113 C/T Q412R minus 23736649 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 15q26.1 "mannosidase, alpha, class 2A, member 2" 16720 rs2106673 MAN2A2 4122 15 89253599 NM_006122 NP_006113 C/T Q412R minus 23736649 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 15q26.1 "mannosidase, alpha, class 2A, member 2" 16721 rs2107732 CCM2 83605 7 44851218 NM_031443 NP_113631 A/G V53I plus 24461668 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 7p13 cerebral cavernous malformation 2 16722 rs2107732 CCM2 83605 7 44851218 NM_031443 NP_113631 A/G V53I plus 24461668 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7p13 cerebral cavernous malformation 2 16723 rs2107732 CCM2 83605 7 44851218 NM_031443 NP_113631 A/G V53I plus 24461668 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p13 cerebral cavernous malformation 2 16724 rs2108433 PPM1E 22843 17 54412710 NM_014906 NP_055721 C/T L602F plus 5224708 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 17q23.2 protein phosphatase 1E (PP2C domain containing) 16725 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 3027906 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 0.07 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16726 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 3027906 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.33 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16727 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 3027906 640 TSC-CSHL TSC_42_A TSC Asian (42) 76 0.21 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16728 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 3027906 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16729 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 3226797 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.26 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16730 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 4328382 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.09 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16731 rs2108622 CYP4F2 8529 19 15851431 NM_001082 NP_001073 C/T V433M plus 4328382 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.17 111 "HapMap,freq,cluster" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 16732 rs2108978 AKAP10 11216 17 19802050 NM_007202 NP_009133 A/G R249H minus 3028319 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 16733 rs2108978 AKAP10 11216 17 19802050 NM_007202 NP_009133 A/G R249H minus 24577184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 16734 rs2108978 AKAP10 11216 17 19802050 NM_007202 NP_009133 A/G R249H minus 24577184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 16735 rs2108978 AKAP10 11216 17 19802050 NM_007202 NP_009133 A/G R249H minus 24577184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 17p11.1 A kinase (PRKA) anchor protein 10 16736 rs2111543 ZNF546 339327 19 45211745 NM_178544 NP_848639 C/G R243T plus 3031260 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 96 "HapMap,freq" 19q13.2 zinc finger protein 546 16737 rs2111544 ZNF546 339327 19 45211775 NM_178544 NP_848639 C/T A253V plus 3031261 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 96 "HapMap,freq" 19q13.2 zinc finger protein 546 16738 rs2114664 TTLL4 9654 2 219429157 NM_014640 NP_055455 A/G R418H plus 5222806 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 16739 rs2114664 TTLL4 9654 2 219429157 NM_014640 NP_055455 A/G R418H plus 23727623 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 16740 rs2114664 TTLL4 9654 2 219429157 NM_014640 NP_055455 A/G R418H plus 23727623 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 16741 rs2114664 TTLL4 9654 2 219429157 NM_014640 NP_055455 A/G R418H plus 23727623 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 16742 rs2116286 PNLIPRP3 119548 10 118226600 XM_058404 XP_058404 A/T F450Y minus 24128275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 16743 rs2116286 PNLIPRP3 119548 10 118226600 XM_058404 XP_058404 A/T F450Y minus 24128275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 16744 rs2116286 PNLIPRP3 119548 10 118226600 XM_058404 XP_058404 A/T F450Y minus 24128275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 16745 rs2116665 GPD2 2820 2 157231757 NM_000408 NP_000399 C/T R264H minus 4474687 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.22 123 "by doubleHit,freq,cluster" 2q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 16746 rs2116665 GPD2 2820 2 157231757 NM_000408 NP_000399 C/T R264H minus 23264641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 2q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 16747 rs2116665 GPD2 2820 2 157231757 NM_000408 NP_000399 C/T R264H minus 23264641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 2q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 16748 rs2116665 GPD2 2820 2 157231757 NM_000408 NP_000399 C/T R264H minus 23264641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 2q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 16749 rs2123465 Rif1 55183 2 152145626 NM_018151 NP_060621 C/T V1362M minus 3046089 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 16750 rs2123465 Rif1 55183 2 152145626 NM_018151 NP_060621 C/T V1362M minus 23671142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 16751 rs2123465 Rif1 55183 2 152145626 NM_018151 NP_060621 C/T V1362M minus 23671142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 16752 rs2123465 Rif1 55183 2 152145626 NM_018151 NP_060621 C/T V1362M minus 23671142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 16753 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 3048653 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.17 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16754 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 3048653 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 80 0.45 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16755 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 3048653 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.45 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16756 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 24627427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16757 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 24627427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16758 rs2125579 ZNF235 9310 19 49484541 NM_004234 NP_004225 G/T H296P plus 24627427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 235 16759 rs2130882 ARRDC4 91947 15 96314849 NM_183376 NP_899232 C/T S358P plus 4945862 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.42 123 "by cluster,freq" 15q26.2 arrestin domain containing 4 16760 rs2130882 ARRDC4 91947 15 96314849 NM_183376 NP_899232 C/T S358P plus 24027887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by cluster,freq" 15q26.2 arrestin domain containing 4 16761 rs2130882 ARRDC4 91947 15 96314849 NM_183376 NP_899232 C/T S358P plus 24027887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 15q26.2 arrestin domain containing 4 16762 rs2130882 ARRDC4 91947 15 96314849 NM_183376 NP_899232 C/T S358P plus 24027887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 15q26.2 arrestin domain containing 4 16763 rs2131107 DAG1 1605 3 49523012 NM_004393 NP_004384 C/G S14W minus 3055215 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 121 "HapMap,freq,cluster" 3p21 dystroglycan 1 (dystrophin-associated glycoprotein 1) 16764 rs2131107 DAG1 1605 3 49523012 NM_004393 NP_004384 C/G S14W minus 3175980 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.07 121 "HapMap,freq,cluster" 3p21 dystroglycan 1 (dystrophin-associated glycoprotein 1) 16765 rs2135720 PCDH15 65217 10 55425497 NM_033056 NP_149045 A/G R929Q minus 24115648 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 10p11.2-q21 protocadherin 15 16766 rs2135720 PCDH15 65217 10 55425497 NM_033056 NP_149045 A/G R929Q minus 24115648 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 10p11.2-q21 protocadherin 15 16767 rs2135720 PCDH15 65217 10 55425497 NM_033056 NP_149045 A/G R929Q minus 24115648 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 10p11.2-q21 protocadherin 15 16768 rs2136373 TRIM37 4591 17 54481336 NM_015294 NP_056109 A/C Q505H plus 3062037 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 17q22-q23 tripartite motif-containing 37 16769 rs2137722 NALP1 22861 17 5359523 NM_014922 NP_055737 C/T R1322C minus 3063757 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16770 rs2137722 NALP1 22861 17 5359523 NM_014922 NP_055737 C/T R1322C minus 3214614 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16771 rs2137722 NALP1 22861 17 5359523 NM_014922 NP_055737 C/T R1322C minus 24705276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16772 rs2137722 NALP1 22861 17 5359523 NM_014922 NP_055737 C/T R1322C minus 24705276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16773 rs2137722 NALP1 22861 17 5359523 NM_014922 NP_055737 C/T R1322C minus 24705276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16774 rs2137722 NALP1 22861 17 5359523 NM_033004 NP_127497 C/T R1366C minus 3063757 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16775 rs2137722 NALP1 22861 17 5359523 NM_033004 NP_127497 C/T R1366C minus 3214614 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16776 rs2137722 NALP1 22861 17 5359523 NM_033004 NP_127497 C/T R1366C minus 24705276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16777 rs2137722 NALP1 22861 17 5359523 NM_033004 NP_127497 C/T R1366C minus 24705276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16778 rs2137722 NALP1 22861 17 5359523 NM_033004 NP_127497 C/T R1366C minus 24705276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16779 rs2137722 NALP1 22861 17 5359523 NM_033006 NP_127499 C/T R1336C minus 3063757 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16780 rs2137722 NALP1 22861 17 5359523 NM_033006 NP_127499 C/T R1336C minus 3214614 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16781 rs2137722 NALP1 22861 17 5359523 NM_033006 NP_127499 C/T R1336C minus 24705276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16782 rs2137722 NALP1 22861 17 5359523 NM_033006 NP_127499 C/T R1336C minus 24705276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16783 rs2137722 NALP1 22861 17 5359523 NM_033006 NP_127499 C/T R1336C minus 24705276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16784 rs2137722 NALP1 22861 17 5359523 NM_033007 NP_127500 C/T R1292C minus 3063757 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16785 rs2137722 NALP1 22861 17 5359523 NM_033007 NP_127500 C/T R1292C minus 3214614 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16786 rs2137722 NALP1 22861 17 5359523 NM_033007 NP_127500 C/T R1292C minus 24705276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16787 rs2137722 NALP1 22861 17 5359523 NM_033007 NP_127500 C/T R1292C minus 24705276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16788 rs2137722 NALP1 22861 17 5359523 NM_033007 NP_127500 C/T R1292C minus 24705276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 16789 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 3067233 771 TSC-CSHL SC_12_A CORIELL Asian (12) 12 0.5 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16790 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 3067233 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.33 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16791 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 3067233 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.38 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16792 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 3067233 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.3 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16793 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 4965332 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.4 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16794 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 24011895 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16795 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 24011895 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16796 rs2140516 SLC13A1 6561 7 122403185 NM_022444 NP_071889 C/T N174S plus 24011895 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 7q31-q32 "solute carrier family 13 (sodium/sulfate symporters), member 1" 16797 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 7986627 808 PLUMEDUT population-1 256 1 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16798 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 7986627 809 PLUMEDUT population-2 356 0.09 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16799 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 7988512 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.25 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16800 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 7988512 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16801 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 7988512 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16802 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 23191826 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16803 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 23191826 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16804 rs2145412 CLCA1 1179 1 86651151 NM_001285 NP_001276 C/T L65F plus 23191826 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 16805 rs2147914 RHBDL2 54933 1 39021364 NM_017821 NP_060291 A/C L262M minus 4976810 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.27 123 "by doubleHit,submitter,freq,cluster" 1p34.2 "rhomboid, veinlet-like 2 (Drosophila)" 16806 rs2147914 RHBDL2 54933 1 39021364 NM_017821 NP_060291 A/C L262M minus 24260417 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 1p34.2 "rhomboid, veinlet-like 2 (Drosophila)" 16807 rs2147914 RHBDL2 54933 1 39021364 NM_017821 NP_060291 A/C L262M minus 24260417 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1p34.2 "rhomboid, veinlet-like 2 (Drosophila)" 16808 rs2147914 RHBDL2 54933 1 39021364 NM_017821 NP_060291 A/C L262M minus 24260417 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 1p34.2 "rhomboid, veinlet-like 2 (Drosophila)" 16809 rs2149554 INSL6 11172 9 5175365 NM_007179 NP_009110 A/G F80L plus 3078377 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24 insulin-like 6 16810 rs2149554 INSL6 11172 9 5175365 NM_007179 NP_009110 A/G F80L plus 23313260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24 insulin-like 6 16811 rs2149554 INSL6 11172 9 5175365 NM_007179 NP_009110 A/G F80L plus 23313260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24 insulin-like 6 16812 rs2149554 INSL6 11172 9 5175365 NM_007179 NP_009110 A/G F80L plus 23313260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9p24 insulin-like 6 16813 rs2151910 RAET1E 135250 6 150303237 NM_139165 NP_631904 A/T Y82N minus 4985144 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1300 0.09 123 "by doubleHit,submitter,freq,cluster" 6q24.3 retinoic acid early transcript 1E 16814 rs2151910 RAET1E 135250 6 150303237 NM_139165 NP_631904 A/T Y82N minus 24489690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 6q24.3 retinoic acid early transcript 1E 16815 rs2151910 RAET1E 135250 6 150303237 NM_139165 NP_631904 A/T Y82N minus 24489690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,submitter,freq,cluster" 6q24.3 retinoic acid early transcript 1E 16816 rs2151910 RAET1E 135250 6 150303237 NM_139165 NP_631904 A/T Y82N minus 24489690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6q24.3 retinoic acid early transcript 1E 16817 rs2152143 MKI67 4288 10 129796970 NM_002417 NP_002408 A/G G1042S minus 24598791 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq" 10q25-qter antigen identified by monoclonal antibody Ki-67 16818 rs2152143 MKI67 4288 10 129796970 NM_002417 NP_002408 A/G G1042S minus 24598791 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq" 10q25-qter antigen identified by monoclonal antibody Ki-67 16819 rs2152143 MKI67 4288 10 129796970 NM_002417 NP_002408 A/G G1042S minus 24598791 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq" 10q25-qter antigen identified by monoclonal antibody Ki-67 16820 rs2155587 PORIMIN 114908 11 101778094 NM_052932 NP_443164 A/G V52M minus 3086005 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 123 "HapMap,submitter,freq" 11q22.1 pro-oncosis receptor inducing membrane injury gene 16821 rs2155587 PORIMIN 114908 11 101778094 NM_052932 NP_443164 A/G V52M minus 24528991 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq" 11q22.1 pro-oncosis receptor inducing membrane injury gene 16822 rs2155587 PORIMIN 114908 11 101778094 NM_052932 NP_443164 A/G V52M minus 24528991 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq" 11q22.1 pro-oncosis receptor inducing membrane injury gene 16823 rs2155587 PORIMIN 114908 11 101778094 NM_052932 NP_443164 A/G V52M minus 24528991 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,submitter,freq" 11q22.1 pro-oncosis receptor inducing membrane injury gene 16824 rs2158367 WDR18 57418 19 941281 NM_024100 NP_077005 A/G A172T plus 3195683 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.23 121 "by cluster,freq" 19p13.3 WD repeat domain 18 16825 rs2159439 CAMKK1 84254 17 3732591 NM_032294 NP_115670 A/C A222D minus 3091057 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 96 HapMap 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 16826 rs2159439 CAMKK1 84254 17 3732591 NM_172206 NP_757343 A/C A222D minus 3091057 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 96 HapMap 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 16827 rs2159439 CAMKK1 84254 17 3732591 NM_172207 NP_757344 A/C A222D minus 3091057 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 96 HapMap 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 16828 rs2159940 ZNF519 162655 18 14095923 NM_145287 NP_660330 A/G K206E minus 5231829 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 18p11.21 zinc finger protein 519 16829 rs2163204 APOB 338 2 21143039 NM_000384 NP_000375 G/T N2785H plus 8819688 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 16830 rs2163204 APOB 338 2 21143039 NM_000384 NP_000375 G/T N2785H plus 8819688 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 16831 rs2163204 APOB 338 2 21143039 NM_000384 NP_000375 G/T N2785H plus 8819688 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 16832 rs2163204 APOB 338 2 21143039 NM_000384 NP_000375 G/T N2785H plus 8819688 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 16833 rs2163204 APOB 338 2 21143039 NM_000384 NP_000375 G/T N2785H plus 8819688 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.08 121 "by doubleHit,freq,cluster" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 16834 rs2165627 PTPRB 5787 12 69270162 NM_002837 NP_002828 G/T D415E minus 118890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 16835 rs2165627 PTPRB 5787 12 69270162 NM_002837 NP_002828 G/T D415E minus 23660784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 16836 rs2165627 PTPRB 5787 12 69270162 NM_002837 NP_002828 G/T D415E minus 23660784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 16837 rs2165627 PTPRB 5787 12 69270162 NM_002837 NP_002828 G/T D415E minus 23660784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 16838 rs2167079 ACP2 53 11 47226831 NM_001610 NP_001601 A/G R29Q minus 3100463 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 11p11.2-p11.11 "acid phosphatase 2, lysosomal" 16839 rs2167079 ACP2 53 11 47226831 NM_001610 NP_001601 A/G R29Q minus 28461438 549 KYUGEN CP CEPH (78) 156 0.33 123 "by doubleHit,freq,cluster" 11p11.2-p11.11 "acid phosphatase 2, lysosomal" 16840 rs2167079 ACP2 53 11 47226831 NM_001610 NP_001601 A/G R29Q minus 28461438 1335 KYUGEN JPK2 Japanese (100) 200 0.24 123 "by doubleHit,freq,cluster" 11p11.2-p11.11 "acid phosphatase 2, lysosomal" 16841 rs2168749 KLRA1 10748 12 10639581 NM_006611 NP_006602 A/G V140I minus 3232723 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.18 123 "by doubleHit,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 16842 rs2168749 KLRA1 10748 12 10639581 NM_006611 NP_006602 A/G V140I minus 24700915 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 16843 rs2168749 KLRA1 10748 12 10639581 NM_006611 NP_006602 A/G V140I minus 24700915 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 16844 rs2168749 KLRA1 10748 12 10639581 NM_006611 NP_006602 A/G V140I minus 24700915 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 16845 rs2170363 GEM 2669 8 95341781 NM_005261 NP_005252 C/G R43G plus 4921857 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.09 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16846 rs2170363 GEM 2669 8 95341781 NM_005261 NP_005252 C/G R43G plus 24045096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16847 rs2170363 GEM 2669 8 95341781 NM_005261 NP_005252 C/G R43G plus 24045096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16848 rs2170363 GEM 2669 8 95341781 NM_005261 NP_005252 C/G R43G plus 24045096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16849 rs2170363 GEM 2669 8 95341781 NM_181702 NP_859053 C/G R43G plus 4921857 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.09 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16850 rs2170363 GEM 2669 8 95341781 NM_181702 NP_859053 C/G R43G plus 24045096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16851 rs2170363 GEM 2669 8 95341781 NM_181702 NP_859053 C/G R43G plus 24045096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16852 rs2170363 GEM 2669 8 95341781 NM_181702 NP_859053 C/G R43G plus 24045096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 8q13-q21 GTP binding protein overexpressed in skeletal muscle 16853 rs2171492 CPA4 51200 7 129544691 NM_016352 NP_057436 G/T G303C plus 3105982 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 116 "by doubleHit,submitter,freq,cluster" 7q32 carboxypeptidase A4 16854 rs2171492 CPA4 51200 7 129544691 NM_016352 NP_057436 G/T G303C plus 3105982 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.08 116 "by doubleHit,submitter,freq,cluster" 7q32 carboxypeptidase A4 16855 rs2171492 CPA4 51200 7 129544691 NM_016352 NP_057436 G/T G303C plus 3105982 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 18 0.33 116 "by doubleHit,submitter,freq,cluster" 7q32 carboxypeptidase A4 16856 rs2171492 CPA4 51200 7 129544691 NM_016352 NP_057436 G/T G303C plus 3105982 780 TSC-CSHL WICGR8_ASIAN_POOLED WICGR Asian (30) 84 0.45 116 "by doubleHit,submitter,freq,cluster" 7q32 carboxypeptidase A4 16857 rs2171492 CPA4 51200 7 129544691 NM_016352 NP_057436 G/T G303C plus 3233738 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.33 116 "by doubleHit,submitter,freq,cluster" 7q32 carboxypeptidase A4 16858 rs2172257 MINA 84864 3 99147415 NM_032778 NP_116167 C/T A385T plus 4922363 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 121 "by doubleHit,freq,cluster" 3q12.1-q12.2 MYC induced nuclear antigen 16859 rs2172397 GBE1 2632 3 81725857 NM_000158 NP_000149 A/G I334V minus 24270152 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 16860 rs2172397 GBE1 2632 3 81725857 NM_000158 NP_000149 A/G I334V minus 24270152 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 16861 rs2172397 GBE1 2632 3 81725857 NM_000158 NP_000149 A/G I334V minus 24270152 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 16862 rs2172521 AVIL 10677 12 56490550 NM_006576 NP_006567 A/G K204E minus 3107239 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 12q13.2 advillin 16863 rs2175563 CLGN 1047 4 141677626 NM_004362 NP_004353 C/T V290I plus 23422263 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 4q28.3-q31.1 calmegin 16864 rs2175563 CLGN 1047 4 141677626 NM_004362 NP_004353 C/T V290I plus 23422263 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q28.3-q31.1 calmegin 16865 rs2175563 CLGN 1047 4 141677626 NM_004362 NP_004353 C/T V290I plus 23422263 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 4q28.3-q31.1 calmegin 16866 rs2178004 MGA 23269 15 39778607 XM_031689 XP_031689 A/T T716S plus 23360102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 15q15 MAX gene associated 16867 rs2178004 MGA 23269 15 39778607 XM_031689 XP_031689 A/T T716S plus 23360102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 15q15 MAX gene associated 16868 rs2178004 MGA 23269 15 39778607 XM_031689 XP_031689 A/T T716S plus 23360102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 15q15 MAX gene associated 16869 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 3177714 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.3 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16870 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 23974948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16871 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 23974948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16872 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 23974948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16873 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 28460950 549 KYUGEN CP CEPH (78) 156 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16874 rs2178403 EIF4G1 1981 3 185522368 NM_004953 NP_004944 C/T M236V minus 28460950 1335 KYUGEN JPK2 Japanese (100) 200 0.41 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16875 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 3177714 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.3 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16876 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 23974948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16877 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 23974948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16878 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 23974948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16879 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 28460950 549 KYUGEN CP CEPH (78) 156 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16880 rs2178403 EIF4G1 1981 3 185522368 NM_182917 NP_886553 C/T M432V minus 28460950 1335 KYUGEN JPK2 Japanese (100) 200 0.41 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16881 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 3177714 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.3 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16882 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 23974948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16883 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 23974948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16884 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 23974948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16885 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 28460950 549 KYUGEN CP CEPH (78) 156 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16886 rs2178403 EIF4G1 1981 3 185522368 NM_198241 NP_937884 C/T M432V minus 28460950 1335 KYUGEN JPK2 Japanese (100) 200 0.41 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16887 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 3177714 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.3 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16888 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 23974948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16889 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 23974948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16890 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 23974948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16891 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 28460950 549 KYUGEN CP CEPH (78) 156 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16892 rs2178403 EIF4G1 1981 3 185522368 NM_198242 NP_937885 C/T M268V minus 28460950 1335 KYUGEN JPK2 Japanese (100) 200 0.41 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16893 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 3177714 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.3 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16894 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 23974948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16895 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 23974948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16896 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 23974948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16897 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 28460950 549 KYUGEN CP CEPH (78) 156 0.27 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16898 rs2178403 EIF4G1 1981 3 185522368 NM_198244 NP_937887 C/T M345V minus 28460950 1335 KYUGEN JPK2 Japanese (100) 200 0.41 123 "by doubleHit,freq,cluster" 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 16899 rs2180314 GSTA2 2939 6 52725690 NM_000846 NP_000837 C/G S112T plus 3117044 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.33 121 "by doubleHit,freq" 6p12.1 glutathione S-transferase A2 16900 rs2180314 GSTA2 2939 6 52725690 NM_000846 NP_000837 C/G S112T plus 3117044 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.23 121 "by doubleHit,freq" 6p12.1 glutathione S-transferase A2 16901 rs2180314 GSTA2 2939 6 52725690 NM_000846 NP_000837 C/G S112T plus 3117044 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 121 "by doubleHit,freq" 6p12.1 glutathione S-transferase A2 16902 rs2180314 GSTA2 2939 6 52725690 NM_000846 NP_000837 C/G S112T plus 3117044 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.43 121 "by doubleHit,freq" 6p12.1 glutathione S-transferase A2 16903 rs2180792 PNN 5411 14 38719985 NM_002687 NP_002678 A/T T441S plus 4928359 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.02 123 "by doubleHit,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 16904 rs2180792 PNN 5411 14 38719985 NM_002687 NP_002678 A/T T441S plus 24579539 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 16905 rs2180792 PNN 5411 14 38719985 NM_002687 NP_002678 A/T T441S plus 24579539 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 16906 rs2180792 PNN 5411 14 38719985 NM_002687 NP_002678 A/T T441S plus 24579539 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by doubleHit,freq,cluster" 14q13.3 "pinin, desmosome associated protein" 16907 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.16 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16908 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 901 AFFY AfAm 12 0.33 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16909 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 902 AFFY Caucasian 22 0.41 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16910 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 903 AFFY Asian 12 0.42 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16911 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 904 AFFY CEPH 12 0.17 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16912 rs2184953 FLG 2312 1 149093855 XM_048104 XP_048104 A/G Y2194H plus 3122822 905 AFFY PDpanel 46 0.48 120 "HapMap,doubleHit,freq,cluster" 1q21 filaggrin 16913 rs2185379 PRDM1 639 6 106642946 NM_001198 NP_001189 A/G G38S plus 4933807 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "by doubleHit,submitter,freq,cluster" 6q21-q22.1 "PR domain containing 1, with ZNF domain" 16914 rs2185379 PRDM1 639 6 106642946 NM_001198 NP_001189 A/G G38S plus 23323991 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 6q21-q22.1 "PR domain containing 1, with ZNF domain" 16915 rs2185379 PRDM1 639 6 106642946 NM_001198 NP_001189 A/G G38S plus 23323991 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 6q21-q22.1 "PR domain containing 1, with ZNF domain" 16916 rs2185379 PRDM1 639 6 106642946 NM_001198 NP_001189 A/G G38S plus 23323991 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 6q21-q22.1 "PR domain containing 1, with ZNF domain" 16917 rs2185639 ARHGEF16 27237 1 3412884 NM_014448 NP_055263 C/T H82Y plus 3242789 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.25 123 "by doubleHit,freq,cluster" 1p36.3 Rho guanine exchange factor (GEF) 16 16918 rs2185639 ARHGEF16 27237 1 3412884 NM_014448 NP_055263 C/T H82Y plus 23156967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.14 123 "by doubleHit,freq,cluster" 1p36.3 Rho guanine exchange factor (GEF) 16 16919 rs2185639 ARHGEF16 27237 1 3412884 NM_014448 NP_055263 C/T H82Y plus 23156967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "by doubleHit,freq,cluster" 1p36.3 Rho guanine exchange factor (GEF) 16 16920 rs2185639 ARHGEF16 27237 1 3412884 NM_014448 NP_055263 C/T H82Y plus 23156967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 32 0.28 123 "by doubleHit,freq,cluster" 1p36.3 Rho guanine exchange factor (GEF) 16 16921 rs2185913 NRAP 4892 10 115400224 NM_006175 NP_006166 A/G Y249C minus 24593931 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16922 rs2185913 NRAP 4892 10 115400224 NM_006175 NP_006166 A/G Y249C minus 24593931 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16923 rs2185913 NRAP 4892 10 115400224 NM_006175 NP_006166 A/G Y249C minus 24593931 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16924 rs2185913 NRAP 4892 10 115400224 NM_198060 NP_932326 A/G Y249C minus 24593931 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16925 rs2185913 NRAP 4892 10 115400224 NM_198060 NP_932326 A/G Y249C minus 24593931 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16926 rs2185913 NRAP 4892 10 115400224 NM_198060 NP_932326 A/G Y249C minus 24593931 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 16927 rs2186564 PTD015 28971 11 77260914 NM_024684 NP_078960 C/T V92M minus 23978318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 11q13.4 PTD015 protein 16928 rs2186564 PTD015 28971 11 77260914 NM_024684 NP_078960 C/T V92M minus 23978318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 11q13.4 PTD015 protein 16929 rs2186564 PTD015 28971 11 77260914 NM_024684 NP_078960 C/T V92M minus 23978318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 11q13.4 PTD015 protein 16930 rs2186797 TMEM16A 55107 11 69685418 NM_018043 NP_060513 C/T F582S plus 24539341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11q13.2 transmembrane protein 16A 16931 rs2186797 TMEM16A 55107 11 69685418 NM_018043 NP_060513 C/T F582S plus 24539341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q13.2 transmembrane protein 16A 16932 rs2186797 TMEM16A 55107 11 69685418 NM_018043 NP_060513 C/T F582S plus 24539341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 11q13.2 transmembrane protein 16A 16933 rs2188736 ZNF154 7710 19 62905585 NM_003444 NP_003435 C/G L182V plus 3127769 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.21 108 "HapMap,doubleHit,freq" 19q13.4 zinc finger protein 154 (pHZ-92) 16934 rs2191432 PEG3 5178 19 62021849 NM_006210 NP_006201 C/T A235T plus 3130859 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 19q13.4 paternally expressed 3 16935 rs2191432 PEG3 5178 19 62021849 NM_006210 NP_006201 C/T A235T plus 3248629 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.23 123 "HapMap,freq,cluster" 19q13.4 paternally expressed 3 16936 rs2191432 PEG3 5178 19 62021849 NM_006210 NP_006201 C/T A235T plus 24118140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 19q13.4 paternally expressed 3 16937 rs2191432 PEG3 5178 19 62021849 NM_006210 NP_006201 C/T A235T plus 24118140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19q13.4 paternally expressed 3 16938 rs2191432 PEG3 5178 19 62021849 NM_006210 NP_006201 C/T A235T plus 24118140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 19q13.4 paternally expressed 3 16939 rs2191432 ZIM2 23619 19 62021849 NM_015363 NP_056178 C/T A110T plus 3130859 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 19q13.4 "zinc finger, imprinted 2" 16940 rs2191432 ZIM2 23619 19 62021849 NM_015363 NP_056178 C/T A110T plus 3248629 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.23 123 "HapMap,freq,cluster" 19q13.4 "zinc finger, imprinted 2" 16941 rs2191432 ZIM2 23619 19 62021849 NM_015363 NP_056178 C/T A110T plus 24118140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 19q13.4 "zinc finger, imprinted 2" 16942 rs2191432 ZIM2 23619 19 62021849 NM_015363 NP_056178 C/T A110T plus 24118140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19q13.4 "zinc finger, imprinted 2" 16943 rs2191432 ZIM2 23619 19 62021849 NM_015363 NP_056178 C/T A110T plus 24118140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 19q13.4 "zinc finger, imprinted 2" 16944 rs2193430 CSMD3 114788 8 113370920 NM_052900 NP_443132 C/G V2794L minus 3133111 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,submitter" 8q23.3 CUB and Sushi multiple domains 3 16945 rs2193430 CSMD3 114788 8 113370920 NM_198123 NP_937756 C/G V3000L minus 3133111 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,submitter" 8q23.3 CUB and Sushi multiple domains 3 16946 rs2193430 CSMD3 114788 8 113370920 NM_198124 NP_937757 C/G V2960L minus 3133111 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,submitter" 8q23.3 CUB and Sushi multiple domains 3 16947 rs2193587 DGKG 1608 3 187472798 NM_001346 NP_001337 A/G R316K minus 3133286 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 16948 rs2193587 DGKG 1608 3 187472798 NM_001346 NP_001337 A/G R316K minus 3175900 619 WICVAR MITOGPOP6 CORIELL Mixed 38 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 16949 rs2193587 DGKG 1608 3 187472798 NM_001346 NP_001337 A/G R316K minus 24135420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 16950 rs2193587 DGKG 1608 3 187472798 NM_001346 NP_001337 A/G R316K minus 24135420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 16951 rs2193587 DGKG 1608 3 187472798 NM_001346 NP_001337 A/G R316K minus 24135420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 16952 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 3135254 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.21 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16953 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 3135254 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 12 0.5 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16954 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 3135254 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.21 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16955 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 3135254 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 94 0.28 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16956 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 3135254 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.33 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16957 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 23769693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16958 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 23769693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16959 rs2195310 ZNF347 84671 19 58337103 NM_032584 NP_115973 A/G N264D minus 23769693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 19q13.42 zinc finger protein 347 16960 rs2195951 OR7G1 125962 19 9086685 XM_064883 XP_064883 A/G Y252C minus 3135979 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16961 rs2195951 OR7G1 125962 19 9086685 XM_064883 XP_064883 A/G Y252C minus 23812718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16962 rs2195951 OR7G1 125962 19 9086685 XM_064883 XP_064883 A/G Y252C minus 23812718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16963 rs2195951 OR7G1 125962 19 9086685 XM_064883 XP_064883 A/G Y252C minus 23812718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16964 rs2199619 PLB1 151056 2 28766609 XM_371487 XP_371487 C/T A531V plus 3207483 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.28 123 "by doubleHit,freq,cluster" 2p23.3 phospholipase B1 16965 rs2199619 PLB1 151056 2 28766609 XM_371487 XP_371487 C/T A531V plus 23846615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "by doubleHit,freq,cluster" 2p23.3 phospholipase B1 16966 rs2199619 PLB1 151056 2 28766609 XM_371487 XP_371487 C/T A531V plus 23846615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 2p23.3 phospholipase B1 16967 rs2199619 PLB1 151056 2 28766609 XM_371487 XP_371487 C/T A531V plus 23846615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 2p23.3 phospholipase B1 16968 rs2199688 SLCO1A2 6579 12 21319514 NM_005075 NP_005066 A/C L572F minus 16339723 1144 PHARMGKB_PMT PA129888520 552 0.07 120 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1A2" 16969 rs2217332 HERPUD1 9709 16 55526649 NM_014685 NP_055500 C/T R50H minus 3160364 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 108 "HapMap,submitter,freq" 16q12.2-q13 "homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1" 16970 rs2217332 HERPUD1 9709 16 55526649 NM_014685 NP_055500 C/T R50H minus 3160364 1303 SEQUENOM CEPH CEPH (92) 92 0.08 108 "HapMap,submitter,freq" 16q12.2-q13 "homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1" 16971 rs2217652 ZNF177 7730 19 9351814 NM_003451 NP_003442 A/G T112M minus 3160725 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 16972 rs2217652 ZNF177 7730 19 9351814 NM_003451 NP_003442 A/G T112M minus 3177926 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 16973 rs2217652 ZNF177 7730 19 9351814 NM_003451 NP_003442 A/G T112M minus 24419654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 16974 rs2217652 ZNF177 7730 19 9351814 NM_003451 NP_003442 A/G T112M minus 24419654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 16975 rs2217652 ZNF177 7730 19 9351814 NM_003451 NP_003442 A/G T112M minus 24419654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 16976 rs2217657 OR7G1 125962 19 9087017 XM_064883 XP_064883 C/G W141C minus 24225507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16977 rs2217657 OR7G1 125962 19 9087017 XM_064883 XP_064883 C/G W141C minus 24225507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16978 rs2217657 OR7G1 125962 19 9087017 XM_064883 XP_064883 C/G W141C minus 24225507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 16979 rs2219898 CSMD3 114788 8 114255179 NM_052900 NP_443132 A/G I182M minus 19766920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16980 rs2219898 CSMD3 114788 8 114255179 NM_052900 NP_443132 A/G I182M minus 23477797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16981 rs2219898 CSMD3 114788 8 114255179 NM_052900 NP_443132 A/G I182M minus 23477797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16982 rs2219898 CSMD3 114788 8 114255179 NM_052900 NP_443132 A/G I182M minus 23477797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16983 rs2219898 CSMD3 114788 8 114255179 NM_198123 NP_937756 A/G I219M minus 19766920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16984 rs2219898 CSMD3 114788 8 114255179 NM_198123 NP_937756 A/G I219M minus 23477797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16985 rs2219898 CSMD3 114788 8 114255179 NM_198123 NP_937756 A/G I219M minus 23477797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16986 rs2219898 CSMD3 114788 8 114255179 NM_198123 NP_937756 A/G I219M minus 23477797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16987 rs2219898 CSMD3 114788 8 114255179 NM_198124 NP_937757 A/G I179M minus 19766920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16988 rs2219898 CSMD3 114788 8 114255179 NM_198124 NP_937757 A/G I179M minus 23477797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16989 rs2219898 CSMD3 114788 8 114255179 NM_198124 NP_937757 A/G I179M minus 23477797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16990 rs2219898 CSMD3 114788 8 114255179 NM_198124 NP_937757 A/G I179M minus 23477797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 8q23.3 CUB and Sushi multiple domains 3 16991 rs2227271 UBQLN3 50613 11 5485494 NM_017481 NP_059509 A/G R624Q minus 3198671 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.06 123 "by submitter,freq,cluster" 11p15 ubiquilin 3 16992 rs2227271 UBQLN3 50613 11 5485494 NM_017481 NP_059509 A/G R624Q minus 24533180 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq,cluster" 11p15 ubiquilin 3 16993 rs2227271 UBQLN3 50613 11 5485494 NM_017481 NP_059509 A/G R624Q minus 24533180 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 11p15 ubiquilin 3 16994 rs2227271 UBQLN3 50613 11 5485494 NM_017481 NP_059509 A/G R624Q minus 24533180 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq,cluster" 11p15 ubiquilin 3 16995 rs2227275 MATN4 8785 20 43359987 NM_003833 NP_003824 A/G G522S minus 3189280 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.15 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16996 rs2227275 MATN4 8785 20 43359987 NM_003833 NP_003824 A/G G522S minus 24540158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16997 rs2227275 MATN4 8785 20 43359987 NM_003833 NP_003824 A/G G522S minus 24540158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16998 rs2227275 MATN4 8785 20 43359987 NM_003833 NP_003824 A/G G522S minus 24540158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 16999 rs2227275 MATN4 8785 20 43359987 NM_030590 NP_085080 A/G G481S minus 3189280 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.15 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17000 rs2227275 MATN4 8785 20 43359987 NM_030590 NP_085080 A/G G481S minus 24540158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17001 rs2227275 MATN4 8785 20 43359987 NM_030590 NP_085080 A/G G481S minus 24540158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17002 rs2227275 MATN4 8785 20 43359987 NM_030590 NP_085080 A/G G481S minus 24540158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17003 rs2227275 MATN4 8785 20 43359987 NM_030592 NP_085095 A/G G440S minus 3189280 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.15 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17004 rs2227275 MATN4 8785 20 43359987 NM_030592 NP_085095 A/G G440S minus 24540158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17005 rs2227275 MATN4 8785 20 43359987 NM_030592 NP_085095 A/G G440S minus 24540158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17006 rs2227275 MATN4 8785 20 43359987 NM_030592 NP_085095 A/G G440S minus 24540158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 20q13.1-q13.2 matrilin 4 17007 rs2227279 BDKRB2 624 14 95777479 NM_000623 NP_000614 A/G G354E plus 3176441 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.07 98 by freq 14q32.1-q32.2 bradykinin receptor B2 17008 rs2227279 BDKRB2 624 14 95777479 NM_000623 NP_000614 A/G G354E plus 3199426 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 98 by freq 14q32.1-q32.2 bradykinin receptor B2 17009 rs2227297 PDE4B 5142 1 66550278 NM_002600 NP_002591 A/T S703C plus 3177303 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.02 98 by freq 1p31 "phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)" 17010 rs2227297 PDE4B 5142 1 66550278 NM_002600 NP_002591 A/T S703C plus 3177303 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 98 by freq 1p31 "phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)" 17011 rs2227297 PDE4B 5142 1 66550278 NM_002600 NP_002591 A/T S703C plus 3177303 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 98 by freq 1p31 "phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)" 17012 rs2227297 PDE4B 5142 1 66550278 NM_002600 NP_002591 A/T S703C plus 3177303 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 98 by freq 1p31 "phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)" 17013 rs2227297 PDE4B 5142 1 66550278 NM_002600 NP_002591 A/T S703C plus 3178125 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.02 98 by freq 1p31 "phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)" 17014 rs2227309 CASP7 840 10 115479157 NM_033340 NP_203126 A/G R249K plus 3177083 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.43 123 "by doubleHit,freq,cluster" 10q25 "caspase 7, apoptosis-related cysteine protease" 17015 rs2227309 CASP7 840 10 115479157 NM_033340 NP_203126 A/G R249K plus 3177085 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.38 123 "by doubleHit,freq,cluster" 10q25 "caspase 7, apoptosis-related cysteine protease" 17016 rs2227309 CASP7 840 10 115479157 NM_033340 NP_203126 A/G R249K plus 24123614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q25 "caspase 7, apoptosis-related cysteine protease" 17017 rs2227309 CASP7 840 10 115479157 NM_033340 NP_203126 A/G R249K plus 24123614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 10q25 "caspase 7, apoptosis-related cysteine protease" 17018 rs2227309 CASP7 840 10 115479157 NM_033340 NP_203126 A/G R249K plus 24123614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 10q25 "caspase 7, apoptosis-related cysteine protease" 17019 rs2227310 CASP7 840 10 115479142 NM_001227 NP_001218 C/G D255E plus 3177082 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17020 rs2227310 CASP7 840 10 115479142 NM_001227 NP_001218 C/G D255E plus 3177084 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17021 rs2227310 CASP7 840 10 115479142 NM_001227 NP_001218 C/G D255E plus 24123608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17022 rs2227310 CASP7 840 10 115479142 NM_001227 NP_001218 C/G D255E plus 24123608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17023 rs2227310 CASP7 840 10 115479142 NM_001227 NP_001218 C/G D255E plus 24123608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17024 rs2227310 CASP7 840 10 115479142 NM_033338 NP_203124 C/G D288E plus 3177082 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17025 rs2227310 CASP7 840 10 115479142 NM_033338 NP_203124 C/G D288E plus 3177084 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17026 rs2227310 CASP7 840 10 115479142 NM_033338 NP_203124 C/G D288E plus 24123608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17027 rs2227310 CASP7 840 10 115479142 NM_033338 NP_203124 C/G D288E plus 24123608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17028 rs2227310 CASP7 840 10 115479142 NM_033338 NP_203124 C/G D288E plus 24123608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17029 rs2227310 CASP7 840 10 115479142 NM_033339 NP_203125 C/G D255E plus 3177082 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17030 rs2227310 CASP7 840 10 115479142 NM_033339 NP_203125 C/G D255E plus 3177084 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17031 rs2227310 CASP7 840 10 115479142 NM_033339 NP_203125 C/G D255E plus 24123608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17032 rs2227310 CASP7 840 10 115479142 NM_033339 NP_203125 C/G D255E plus 24123608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17033 rs2227310 CASP7 840 10 115479142 NM_033339 NP_203125 C/G D255E plus 24123608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17034 rs2227310 CASP7 840 10 115479142 NM_033340 NP_203126 C/G T244S plus 3177082 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17035 rs2227310 CASP7 840 10 115479142 NM_033340 NP_203126 C/G T244S plus 3177084 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.22 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17036 rs2227310 CASP7 840 10 115479142 NM_033340 NP_203126 C/G T244S plus 24123608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17037 rs2227310 CASP7 840 10 115479142 NM_033340 NP_203126 C/G T244S plus 24123608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17038 rs2227310 CASP7 840 10 115479142 NM_033340 NP_203126 C/G T244S plus 24123608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q25 "caspase 7, apoptosis-related cysteine protease" 17039 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 3171864 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17040 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 12675365 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17041 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 12675365 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17042 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 12675365 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17043 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 12675365 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17044 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 12675365 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17045 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 23561731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17046 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 23561731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17047 rs2227329 CSF3 1440 17 35426583 NM_000759 NP_000750 A/C L157M plus 23561731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17048 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 3171864 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17049 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 12675365 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17050 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 12675365 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17051 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 12675365 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17052 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 12675365 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17053 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 12675365 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17054 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 23561731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17055 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 23561731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17056 rs2227329 CSF3 1440 17 35426583 NM_172219 NP_757373 A/C L154M plus 23561731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17057 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 3171864 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17058 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 12675365 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17059 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 12675365 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17060 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 12675365 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17061 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 12675365 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17062 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 12675365 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17063 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 23561731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17064 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 23561731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17065 rs2227329 CSF3 1440 17 35426583 NM_172220 NP_757374 A/C L150M plus 23561731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17066 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 3171865 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17067 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 12675367 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17068 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 12675367 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17069 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 12675367 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17070 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 12675367 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17071 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 12675367 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17072 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 23561748 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17073 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 23561748 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17074 rs2227330 CSF3 1440 17 35426634 NM_000759 NP_000750 A/G A174T plus 23561748 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17075 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 3171865 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17076 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 12675367 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17077 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 12675367 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17078 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 12675367 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17079 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 12675367 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17080 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 12675367 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17081 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 23561748 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17082 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 23561748 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17083 rs2227330 CSF3 1440 17 35426634 NM_172219 NP_757373 A/G A171T plus 23561748 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17084 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 3171865 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17085 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 12675367 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17086 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 12675367 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17087 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 12675367 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17088 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 12675367 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17089 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 12675367 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17090 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 23561748 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17091 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 23561748 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17092 rs2227330 CSF3 1440 17 35426634 NM_172220 NP_757374 A/G A167T plus 23561748 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 colony stimulating factor 3 (granulocyte) 17093 rs2227346 F2RL3 9002 19 16862160 NM_003950 NP_003941 G/T F296V plus 3171888 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 116 "by cluster,freq" 19p12 coagulation factor II (thrombin) receptor-like 3 17094 rs2227507 IL22 50616 12 66928914 NM_020525 NP_065386 A/G S158G minus 3172069 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 98 HapMap 12q15 interleukin 22 17095 rs2227507 IL22 50616 12 66928914 NM_020525 NP_065386 A/G S158G minus 3172069 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 12q15 interleukin 22 17096 rs2227564 PLAU 5328 10 75343107 NM_002658 NP_002649 C/T L141P plus 3172132 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 121 "by cluster,freq" 10q24 "plasminogen activator, urokinase" 17097 rs2227564 PLAU 5328 10 75343107 NM_002658 NP_002649 C/T L141P plus 3172132 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.34 121 "by cluster,freq" 10q24 "plasminogen activator, urokinase" 17098 rs2227564 PLAU 5328 10 75343107 NM_002658 NP_002649 C/T L141P plus 3172890 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.23 121 "by cluster,freq" 10q24 "plasminogen activator, urokinase" 17099 rs2227564 PLAU 5328 10 75343107 NM_002658 NP_002649 C/T L141P plus 3207151 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.22 121 "by cluster,freq" 10q24 "plasminogen activator, urokinase" 17100 rs2227567 PLAU 5328 10 75343754 NM_002658 NP_002649 A/C K231Q plus 3172135 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.23 123 by freq 10q24 "plasminogen activator, urokinase" 17101 rs2227567 PLAU 5328 10 75343754 NM_002658 NP_002649 A/C K231Q plus 3176308 619 WICVAR MITOGPOP6 CORIELL Mixed 68 0.01 123 by freq 10q24 "plasminogen activator, urokinase" 17102 rs2227567 PLAU 5328 10 75343754 NM_002658 NP_002649 A/C K231Q plus 23631909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24 "plasminogen activator, urokinase" 17103 rs2227567 PLAU 5328 10 75343754 NM_002658 NP_002649 A/C K231Q plus 23631909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10q24 "plasminogen activator, urokinase" 17104 rs2227567 PLAU 5328 10 75343754 NM_002658 NP_002649 A/C K231Q plus 23631909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q24 "plasminogen activator, urokinase" 17105 rs2227606 SERPINC1 462 1 170612779 NM_000488 NP_000479 A/G T147A minus 3172177 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1q23-q25.1 "serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1" 17106 rs2227606 SERPINC1 462 1 170612779 NM_000488 NP_000479 A/G T147A minus 23685911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q23-q25.1 "serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1" 17107 rs2227606 SERPINC1 462 1 170612779 NM_000488 NP_000479 A/G T147A minus 23685911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q23-q25.1 "serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1" 17108 rs2227606 SERPINC1 462 1 170612779 NM_000488 NP_000479 A/G T147A minus 23685911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q23-q25.1 "serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1" 17109 rs2227723 VTN 7448 17 23720043 NM_000638 NP_000629 A/G R268Q minus 3172308 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 98 by freq 17q11 "vitronectin (serum spreading factor, somatomedin B, complement S-protein)" 17110 rs2227799 F2R 2149 5 76065041 NM_001992 NP_001983 A/C S412Y plus 3172399 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 119 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor 17111 rs2227799 F2R 2149 5 76065041 NM_001992 NP_001983 A/C S412Y plus 14339214 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 119 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor 17112 rs2227832 F2R 2149 5 76064575 NM_001992 NP_001983 G/T V257L plus 3172438 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 38 0.03 119 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor 17113 rs2227832 F2R 2149 5 76064575 NM_001992 NP_001983 G/T V257L plus 14339392 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 38 0.03 119 "by cluster,freq" 5q13 coagulation factor II (thrombin) receptor 17114 rs2227840 DRD5 1816 4 9460107 NM_000798 NP_000789 C/G C62S plus 3172447 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 110 0.05 98 by freq 4p16.1 dopamine receptor D5 17115 rs2227843 DRD5 1816 4 9460620 NM_000798 NP_000789 A/G S233N plus 3172450 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 112 0.16 98 by freq 4p16.1 dopamine receptor D5 17116 rs2227845 DRD5 1816 4 9460541 NM_000798 NP_000789 G/T F207V plus 3172452 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 110 0.28 98 by freq 4p16.1 dopamine receptor D5 17117 rs2227849 DRD5 1816 4 9460251 NM_000798 NP_000789 A/G G110E plus 3172456 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 110 0.02 98 by freq 4p16.1 dopamine receptor D5 17118 rs2227852 DRD5 1816 4 9460634 NM_000798 NP_000789 A/G V238I plus 3172459 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 104 0.13 98 by freq 4p16.1 dopamine receptor D5 17119 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 3172479 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.08 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17120 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.06 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17121 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17122 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17123 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17124 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17125 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5586521 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17126 rs2227869 ERCC5 2073 13 102313086 NM_000123 NP_000114 C/G C529S plus 5605249 693 EGP_SNPS PDR90 NIHPDR 170 0.02 113 "HapMap,freq,cluster" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17127 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 3172482 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 1 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17128 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 5586523 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17129 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 5586523 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17130 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 5586523 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17131 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 5586523 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17132 rs2227871 ERCC5 2073 13 102326049 NM_000123 NP_000114 C/T A1119V plus 5586523 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 17133 rs2227891 PYGB 5834 20 25210769 NM_002862 NP_002853 A/G D502N plus 3172502 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 60 0.15 123 "by doubleHit,freq,cluster" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 17134 rs2227891 PYGB 5834 20 25210769 NM_002862 NP_002853 A/G D502N plus 3220071 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.32 123 "by doubleHit,freq,cluster" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 17135 rs2227891 PYGB 5834 20 25210769 NM_002862 NP_002853 A/G D502N plus 24140145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 17136 rs2227891 PYGB 5834 20 25210769 NM_002862 NP_002853 A/G D502N plus 24140145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 17137 rs2227891 PYGB 5834 20 25210769 NM_002862 NP_002853 A/G D502N plus 24140145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 17138 rs2227902 REST 5978 4 57638028 NM_005612 NP_005603 G/T E692D plus 3172513 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.14 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17139 rs2227902 REST 5978 4 57638028 NM_005612 NP_005603 G/T E692D plus 23379726 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17140 rs2227902 REST 5978 4 57638028 NM_005612 NP_005603 G/T E692D plus 23379726 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17141 rs2227902 REST 5978 4 57638028 NM_005612 NP_005603 G/T E692D plus 23379726 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17142 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 3172529 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17143 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 6903786 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.03 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17144 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 6903786 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17145 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 6903786 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17146 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 6903786 777 SNP500CANCER HISP1 Hispanic (23) 42 0.02 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17147 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 6903786 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17148 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 16342361 693 EGP_SNPS PDR90 NIHPDR 180 0.03 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17149 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 16342361 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17150 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 23648944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17151 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 23648944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17152 rs2227914 DMC1 11144 22 37259106 NM_007068 NP_008999 A/G M200V minus 23648944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 22q13.1 "DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 17153 rs2227928 ATR 545 3 143764310 NM_001184 NP_001175 C/T M211T minus 3172543 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.46 123 "HapMap,doubleHit,freq,cluster" 3q22-q24 ataxia telangiectasia and Rad3 related 17154 rs2227928 ATR 545 3 143764310 NM_001184 NP_001175 C/T M211T minus 14210760 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.43 123 "HapMap,doubleHit,freq,cluster" 3q22-q24 ataxia telangiectasia and Rad3 related 17155 rs2227928 ATR 545 3 143764310 NM_001184 NP_001175 C/T M211T minus 23874781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 3q22-q24 ataxia telangiectasia and Rad3 related 17156 rs2227928 ATR 545 3 143764310 NM_001184 NP_001175 C/T M211T minus 23874781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 3q22-q24 ataxia telangiectasia and Rad3 related 17157 rs2227928 ATR 545 3 143764310 NM_001184 NP_001175 C/T M211T minus 23874781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 3q22-q24 ataxia telangiectasia and Rad3 related 17158 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 3172560 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17159 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 5586321 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17160 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 5586321 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17161 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 5586321 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17162 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 5586321 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17163 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 5586321 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17164 rs2227943 BRCA2 675 13 31809278 NM_000059 NP_000050 C/T L929S plus 16355801 693 EGP_SNPS PDR90 NIHPDR 174 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17165 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 3172561 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17166 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 5586322 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17167 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 5586322 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17168 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 5586322 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17169 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 5586322 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17170 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 5586322 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17171 rs2227944 BRCA2 675 13 31809452 NM_000059 NP_000050 A/T N987I plus 16355804 693 EGP_SNPS PDR90 NIHPDR 174 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 17172 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17173 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17174 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17175 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17176 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17177 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17178 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17179 rs2227945 BRCA1 672 17 38497656 NM_007294 NP_009225 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17180 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17181 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17182 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17183 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17184 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17185 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17186 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17187 rs2227945 BRCA1 672 17 38497656 NM_007295 NP_009226 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17188 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17189 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17190 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17191 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17192 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17193 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17194 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17195 rs2227945 BRCA1 672 17 38497656 NM_007296 NP_009227 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17196 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17197 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17198 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17199 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17200 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17201 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17202 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17203 rs2227945 BRCA1 672 17 38497656 NM_007297 NP_009228 A/G S844G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17204 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17205 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17206 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17207 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17208 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17209 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17210 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17211 rs2227945 BRCA1 672 17 38497656 NM_007299 NP_009230 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17212 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17213 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17214 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17215 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17216 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17217 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17218 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17219 rs2227945 BRCA1 672 17 38497656 NM_007300 NP_009231 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17220 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17221 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17222 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17223 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17224 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17225 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17226 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17227 rs2227945 BRCA1 672 17 38497656 NM_007301 NP_009232 A/G S1140G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17228 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 3172564 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17229 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 5586303 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 192 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17230 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 5586303 775 SNP500CANCER CAUC1 Caucasian (31) 52 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17231 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 5586303 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17232 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 5586303 777 SNP500CANCER HISP1 Hispanic (23) 44 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17233 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 5586303 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17234 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 8486261 693 EGP_SNPS PDR90 NIHPDR 176 0.02 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17235 rs2227945 BRCA1 672 17 38497656 NM_007302 NP_009233 A/G S1099G minus 8486261 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by cluster,freq" 17q21 "breast cancer 1, early onset" 17236 rs2227956 HSPA1L 3305 6 31886251 NM_005527 NP_005518 C/T T493M minus 3172576 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 38 0.03 120 "by doubleHit,cluster" 6p21.3 heat shock 70kDa protein 1-like 17237 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 3172597 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 28 0.32 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17238 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 5606004 693 EGP_SNPS PDR90 NIHPDR 172 0.21 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17239 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 6903927 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.18 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17240 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 6903927 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17241 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 6903927 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17242 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 6903927 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17243 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 6903927 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17244 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 24104518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17245 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 24104518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17246 rs2227973 RAG1 5896 11 36553889 NM_000448 NP_000439 A/G K820R plus 24104518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by submitter,freq,cluster" 11p13 recombination activating gene 1 17247 rs2228006 PMS2 5395 7 5800016 NM_000535 NP_000526 A/G K541E minus 3172636 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.04 121 "by doubleHit,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 17248 rs2228006 PMS2 5395 7 5800016 NM_000535 NP_000526 A/G K541E minus 4921292 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.07 121 "by doubleHit,freq,cluster" 7p22.2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) 17249 rs2228049 CD14 929 5 139992143 NM_000591 NP_000582 A/G N204D minus 3172683 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.03 98 by freq 5q31.1 CD14 antigen 17250 rs2228053 CUBN 8029 10 17185148 NM_001081 NP_001072 C/G I504M minus 3172687 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 56 0.04 98 by freq 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 17251 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 3172694 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 68 0.04 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17252 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 4384953 649 FHCRC POPU1 USA (20) 40 0.4 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17253 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 8830216 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.3 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17254 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 8830216 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.39 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17255 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 24537740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17256 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 24537740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17257 rs2228059 IL15RA 3601 10 6042374 NM_002189 NP_002180 A/C N182T minus 24537740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17258 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 3172694 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 68 0.04 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17259 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 4384953 649 FHCRC POPU1 USA (20) 40 0.4 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17260 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 8830216 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.3 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17261 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 8830216 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.39 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17262 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 24537740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17263 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 24537740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17264 rs2228059 IL15RA 3601 10 6042374 NM_172200 NP_751950 A/C N146T minus 24537740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 10p15-p14 "interleukin 15 receptor, alpha" 17265 rs2228063 CA2 760 8 86580241 NM_000067 NP_000058 A/G N252D plus 3172698 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 56 0.04 123 "HapMap,freq,cluster" 8q22 carbonic anhydrase II 17266 rs2228063 CA2 760 8 86580241 NM_000067 NP_000058 A/G N252D plus 3172698 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 8q22 carbonic anhydrase II 17267 rs2228063 CA2 760 8 86580241 NM_000067 NP_000058 A/G N252D plus 23473297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 8q22 carbonic anhydrase II 17268 rs2228063 CA2 760 8 86580241 NM_000067 NP_000058 A/G N252D plus 23473297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 8q22 carbonic anhydrase II 17269 rs2228063 CA2 760 8 86580241 NM_000067 NP_000058 A/G N252D plus 23473297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 8q22 carbonic anhydrase II 17270 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 3172700 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.06 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17271 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 4926109 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.02 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17272 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 5586239 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17273 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 5586239 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17274 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 5586239 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17275 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 5586239 777 SNP500CANCER HISP1 Hispanic (23) 44 1 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17276 rs2228065 ALOX5 240 10 45240512 NM_000698 NP_000689 A/G E254K plus 5586239 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 116 "by cluster,freq" 10q11.2 arachidonate 5-lipoxygenase 17277 rs2228076 IL17R 23765 22 15963763 NM_014339 NP_055154 C/T A367V plus 3172712 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.28 98 by freq 22q11.1 interleukin 17 receptor 17278 rs2228078 GHRHR 2692 7 30792092 NM_000823 NP_000814 C/T M422T plus 3172714 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.04 98 by freq 7p14 growth hormone releasing hormone receptor 17279 rs2228093 ALDH1B1 219 9 38386002 NM_000692 NP_000683 C/T A86V plus 3172733 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.14 123 "by doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 17280 rs2228093 ALDH1B1 219 9 38386002 NM_000692 NP_000683 C/T A86V plus 24092964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 17281 rs2228093 ALDH1B1 219 9 38386002 NM_000692 NP_000683 C/T A86V plus 24092964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 17282 rs2228093 ALDH1B1 219 9 38386002 NM_000692 NP_000683 C/T A86V plus 24092964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 17283 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 3172788 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 68 1 123 by freq 2q12 "interleukin 1 receptor, type I" 17284 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 5111242 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 123 by freq 2q12 "interleukin 1 receptor, type I" 17285 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 5111242 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.11 123 by freq 2q12 "interleukin 1 receptor, type I" 17286 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 24302787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 2q12 "interleukin 1 receptor, type I" 17287 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 24302787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q12 "interleukin 1 receptor, type I" 17288 rs2228139 IL1R1 3554 2 102240167 NM_000877 NP_000868 C/G A124G plus 24302787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q12 "interleukin 1 receptor, type I" 17289 rs2228154 AVPR1A 552 12 61830868 NM_000706 NP_000697 A/G G6S minus 3172804 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 32 1 123 "by cluster,freq" 12q14-q15 arginine vasopressin receptor 1A 17290 rs2228154 AVPR1A 552 12 61830868 NM_000706 NP_000697 A/G G6S minus 4250098 524 LDN AUTISM USA (autistic probands) 54 0.06 123 "by cluster,freq" 12q14-q15 arginine vasopressin receptor 1A 17291 rs2228154 AVPR1A 552 12 61830868 NM_000706 NP_000697 A/G G6S minus 23423555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q14-q15 arginine vasopressin receptor 1A 17292 rs2228154 AVPR1A 552 12 61830868 NM_000706 NP_000697 A/G G6S minus 23423555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 12q14-q15 arginine vasopressin receptor 1A 17293 rs2228154 AVPR1A 552 12 61830868 NM_000706 NP_000697 A/G G6S minus 23423555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 12q14-q15 arginine vasopressin receptor 1A 17294 rs2228168 LRP2 4036 2 169894071 NM_004525 NP_004516 C/T I2065T minus 3172821 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.04 123 "HapMap,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 17295 rs2228168 LRP2 4036 2 169894071 NM_004525 NP_004516 C/T I2065T minus 3172821 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 17296 rs2228168 LRP2 4036 2 169894071 NM_004525 NP_004516 C/T I2065T minus 23684062 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 17297 rs2228168 LRP2 4036 2 169894071 NM_004525 NP_004516 C/T I2065T minus 23684062 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 17298 rs2228168 LRP2 4036 2 169894071 NM_004525 NP_004516 C/T I2065T minus 23684062 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 17299 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 3172886 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.25 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17300 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 3172886 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.33 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17301 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 4927416 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.49 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17302 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 23451649 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17303 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 23451649 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17304 rs2228224 GLI 2735 12 56151588 NM_005269 NP_005260 A/G G933D plus 23451649 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17305 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 3172888 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17306 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 3172888 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17307 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 15835123 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17308 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 24458951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17309 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 24458951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17310 rs2228226 GLI 2735 12 56152088 NM_005269 NP_005260 C/G E1100Q plus 24458951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.2-q13.3 glioma-associated oncogene homolog (zinc finger protein) 17311 rs2228231 NFATC4 4776 14 23909181 NM_004554 NP_004545 A/G S246N plus 3172893 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.06 98 by freq 14q11.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4" 17312 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.12 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17313 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 901 AFFY AfAm 12 0.08 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17314 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 902 AFFY Caucasian 22 0.18 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17315 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 903 AFFY Asian 10 0.1 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17316 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 904 AFFY CEPH 8 1 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17317 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 3172906 905 AFFY PDpanel 42 0.24 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17318 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 4919005 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.3 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17319 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 23914253 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17320 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 23914253 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17321 rs2228243 HRG 3273 3 187877815 NM_000412 NP_000403 A/G H340R plus 23914253 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by submitter,freq,cluster" 3q27 histidine-rich glycoprotein 17322 rs2228257 SMARCA3 6596 3 150263992 NM_003071 NP_003062 C/G E362Q minus 3172920 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.05 98 by freq 3q25.1-q26.1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3" 17323 rs2228257 SMARCA3 6596 3 150263992 NM_139048 NP_620636 C/G E362Q minus 3172920 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.05 98 by freq 3q25.1-q26.1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3" 17324 rs2228259 STAT2 6773 12 55034562 NM_005419 NP_005410 C/G C246S minus 3172922 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.03 98 by freq 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 17325 rs2228271 EDNRB 1910 13 77390483 NM_000115 NP_000106 G/T R76M minus 3172934 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.06 98 by freq 13q22 endothelin receptor type B 17326 rs2228271 EDNRB 1910 13 77390483 NM_003991 NP_003982 G/T R76M minus 3172934 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.06 98 by freq 13q22 endothelin receptor type B 17327 rs2228273 ZNF133 7692 20 18244076 NM_003434 NP_003425 A/G G193E plus 3172936 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.06 98 by freq 20p11.23-20p11.22 zinc finger protein 133 (clone pHZ-13) 17328 rs2228275 ZNF135 7694 19 63271439 NM_003436 NP_003427 C/T S592L plus 3172940 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.26 98 by freq 19q13.4 zinc finger protein 135 (clone pHZ-17) 17329 rs2228277 ZNF135 7694 19 63271184 NM_003436 NP_003427 C/T S507L plus 3172942 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.22 98 by freq 19q13.4 zinc finger protein 135 (clone pHZ-17) 17330 rs2228278 ZNF135 7694 19 63271213 NM_003436 NP_003427 A/G T517A plus 3172943 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.21 98 by freq 19q13.4 zinc finger protein 135 (clone pHZ-17) 17331 rs2228279 ZNF135 7694 19 63271399 NM_003436 NP_003427 C/G G579R plus 3172944 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.09 98 "HapMap,freq" 19q13.4 zinc finger protein 135 (clone pHZ-17) 17332 rs2228279 ZNF135 7694 19 63271399 NM_003436 NP_003427 C/G G579R plus 3172944 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 98 "HapMap,freq" 19q13.4 zinc finger protein 135 (clone pHZ-17) 17333 rs2228280 ZNF135 7694 19 63271201 NM_003436 NP_003427 C/T Q513X plus 3172945 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.12 98 by freq 19q13.4 zinc finger protein 135 (clone pHZ-17) 17334 rs2228293 S100A6 6277 1 150320249 NM_014624 NP_055439 A/G G90D minus 3172958 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 70 0.03 98 by freq 1q21 S100 calcium binding protein A6 (calcyclin) 17335 rs2228305 FASN 2194 17 77636081 NM_004104 NP_004095 A/G V1483I minus 3172972 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.09 123 by freq 17q25 fatty acid synthase 17336 rs2228307 FASN 2194 17 77634184 NM_004104 NP_004095 A/G I1888V minus 3172974 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 66 0.05 98 by freq 17q25 fatty acid synthase 17337 rs2228310 PCCB 5096 3 137499587 NM_000532 NP_000523 C/T P287S plus 3172977 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 70 0.34 98 by freq 3q21-q22 "propionyl Coenzyme A carboxylase, beta polypeptide" 17338 rs2228315 SELPLG 6404 12 107520364 NM_003006 NP_002997 A/G M62I minus 3172984 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.1 120 "HapMap,doubleHit,freq,cluster" 12q24 selectin P ligand 17339 rs2228315 SELPLG 6404 12 107520364 NM_003006 NP_002997 A/G M62I minus 12568538 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.26 120 "HapMap,doubleHit,freq,cluster" 12q24 selectin P ligand 17340 rs2228315 SELPLG 6404 12 107520364 NM_003006 NP_002997 A/G M62I minus 12568538 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.1 120 "HapMap,doubleHit,freq,cluster" 12q24 selectin P ligand 17341 rs2228315 SELPLG 6404 12 107520364 NM_003006 NP_002997 A/G M62I minus 12568538 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 120 "HapMap,doubleHit,freq,cluster" 12q24 selectin P ligand 17342 rs2228331 GPC1 2817 2 241125518 NM_002081 NP_002072 A/G S500G plus 3173002 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.2 123 by freq 2q35-q37 glypican 1 17343 rs2228331 GPC1 2817 2 241125518 NM_002081 NP_002072 A/G S500G plus 24170758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 by freq 2q35-q37 glypican 1 17344 rs2228331 GPC1 2817 2 241125518 NM_002081 NP_002072 A/G S500G plus 24170758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 2q35-q37 glypican 1 17345 rs2228331 GPC1 2817 2 241125518 NM_002081 NP_002072 A/G S500G plus 24170758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 2q35-q37 glypican 1 17346 rs2228337 TGM1 7051 14 23788408 NM_000359 NP_000350 A/T D802V minus 3173008 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.09 123 "HapMap,freq,cluster" 14q11.2 "transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)" 17347 rs2228337 TGM1 7051 14 23788408 NM_000359 NP_000350 A/T D802V minus 3173008 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 14q11.2 "transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)" 17348 rs2228337 TGM1 7051 14 23788408 NM_000359 NP_000350 A/T D802V minus 23799199 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 14q11.2 "transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)" 17349 rs2228337 TGM1 7051 14 23788408 NM_000359 NP_000350 A/T D802V minus 23799199 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 14q11.2 "transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)" 17350 rs2228337 TGM1 7051 14 23788408 NM_000359 NP_000350 A/T D802V minus 23799199 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 14q11.2 "transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)" 17351 rs2228468 CCBP2 1238 3 42882116 NM_001296 NP_001287 A/C Y373S plus 3173153 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 48 0.31 123 "by doubleHit,submitter,freq,cluster" 3p21.3 chemokine binding protein 2 17352 rs2228468 CCBP2 1238 3 42882116 NM_001296 NP_001287 A/C Y373S plus 24325654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 3p21.3 chemokine binding protein 2 17353 rs2228468 CCBP2 1238 3 42882116 NM_001296 NP_001287 A/C Y373S plus 24325654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 3p21.3 chemokine binding protein 2 17354 rs2228468 CCBP2 1238 3 42882116 NM_001296 NP_001287 A/C Y373S plus 24325654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 3p21.3 chemokine binding protein 2 17355 rs2228469 CCBP2 1238 3 42881741 NM_001296 NP_001287 C/T A248V plus 3173154 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.04 98 by freq 3p21.3 chemokine binding protein 2 17356 rs2228479 MC1R 4157 16 88513441 NM_002386 NP_002377 A/G V92M plus 3173167 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.12 120 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 17357 rs2228479 MC1R 4157 16 88513441 NM_002386 NP_002377 A/G V92M plus 4472755 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.07 120 "by cluster,freq" 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 17358 rs2228487 XRCC1 7515 19 48750732 NM_006297 NP_006288 A/G R107H minus 3173176 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 52 0.06 98 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 17359 rs2228500 PFKM 5213 12 46812979 NM_000289 NP_000280 A/G R100Q plus 3173192 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 58 0.21 102 "by submitter,freq,cluster" 12q13.3 "phosphofructokinase, muscle" 17360 rs2228500 PFKM 5213 12 46812979 NM_000289 NP_000280 A/G R100Q plus 3204203 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.2 102 "by submitter,freq,cluster" 12q13.3 "phosphofructokinase, muscle" 17361 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 3173202 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17362 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 3173202 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17363 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 4937552 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17364 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 23518429 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17365 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 23518429 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17366 rs2228510 HERC1 8925 15 61757509 NM_003922 NP_003913 A/G I2220V minus 23518429 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17367 rs2228516 HERC1 8925 15 61705332 NM_003922 NP_003913 A/G I4394V minus 3173208 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 64 0.03 98 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 17368 rs2228526 ERCC6 2074 10 50348723 NM_000124 NP_000115 A/G M1097V minus 3173218 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.09 123 "by submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17369 rs2228526 ERCC6 2074 10 50348723 NM_000124 NP_000115 A/G M1097V minus 5609190 693 EGP_SNPS PDR90 NIHPDR 168 0.18 123 "by submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17370 rs2228526 ERCC6 2074 10 50348723 NM_000124 NP_000115 A/G M1097V minus 24695003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17371 rs2228526 ERCC6 2074 10 50348723 NM_000124 NP_000115 A/G M1097V minus 24695003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17372 rs2228526 ERCC6 2074 10 50348723 NM_000124 NP_000115 A/G M1097V minus 24695003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17373 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 3173219 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 62 0.1 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17374 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 5609193 693 EGP_SNPS PDR90 NIHPDR 166 0.19 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17375 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 5609193 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17376 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 24695002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17377 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 24695002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17378 rs2228527 ERCC6 2074 10 50348375 NM_000124 NP_000115 A/G R1213G minus 24695002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17379 rs2228528 ERCC6 2074 10 50402286 NM_000124 NP_000115 A/G G399D minus 3173220 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 68 0.01 120 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17380 rs2228528 ERCC6 2074 10 50402286 NM_000124 NP_000115 A/G G399D minus 5015673 738 YUSUKE JBIC-ALLELE Japanese (752) 726 0.45 120 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17381 rs2228528 ERCC6 2074 10 50402286 NM_000124 NP_000115 A/G G399D minus 5609012 693 EGP_SNPS PDR90 NIHPDR 164 0.22 120 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17382 rs2228529 ERCC6 2074 10 50337111 NM_000124 NP_000115 A/G Q1413R minus 3173221 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17383 rs2228529 ERCC6 2074 10 50337111 NM_000124 NP_000115 A/G Q1413R minus 5609216 693 EGP_SNPS PDR90 NIHPDR 176 0.19 123 "by doubleHit,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17384 rs2228529 ERCC6 2074 10 50337111 NM_000124 NP_000115 A/G Q1413R minus 24694991 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17385 rs2228529 ERCC6 2074 10 50337111 NM_000124 NP_000115 A/G Q1413R minus 24694991 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17386 rs2228529 ERCC6 2074 10 50337111 NM_000124 NP_000115 A/G Q1413R minus 24694991 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 17387 rs2228539 EMR1 2015 19 6877378 NM_001974 NP_001965 C/T M663T plus 3173231 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.48 98 by freq 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 17388 rs2228541 SERPINA6 866 14 93845974 NM_001756 NP_001747 G/T S246A minus 3173233 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 42 0.48 120 "by cluster,freq" 14q32.1 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6" 17389 rs2228545 BMPR2 659 2 203246218 NM_001204 NP_001195 A/G S775N plus 3173237 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 56 0.04 98 "HapMap,freq" 2q33-q34 "bone morphogenetic protein receptor, type II (serine/threonine kinase)" 17390 rs2228545 BMPR2 659 2 203246218 NM_001204 NP_001195 A/G S775N plus 3173237 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 98 "HapMap,freq" 2q33-q34 "bone morphogenetic protein receptor, type II (serine/threonine kinase)" 17391 rs2228547 COL10A1 1300 6 116548339 NM_000493 NP_000484 C/G G545R minus 3173240 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.15 123 "by cluster,freq" 6q21-q22 "collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)" 17392 rs2228547 COL10A1 1300 6 116548339 NM_000493 NP_000484 C/G G545R minus 24041148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6q21-q22 "collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)" 17393 rs2228547 COL10A1 1300 6 116548339 NM_000493 NP_000484 C/G G545R minus 24041148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 6q21-q22 "collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)" 17394 rs2228547 COL10A1 1300 6 116548339 NM_000493 NP_000484 C/G G545R minus 24041148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 6q21-q22 "collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)" 17395 rs2228561 COL7A1 1294 3 48603018 NM_000094 NP_000085 C/T P595L minus 3173254 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 72 0.06 123 "HapMap,doubleHit,freq,cluster" 3p21.1 "collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive)" 17396 rs2228561 COL7A1 1294 3 48603018 NM_000094 NP_000085 C/T P595L minus 3550787 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.11 123 "HapMap,doubleHit,freq,cluster" 3p21.1 "collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive)" 17397 rs2228561 COL7A1 1294 3 48603018 NM_000094 NP_000085 C/T P595L minus 24326946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 3p21.1 "collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive)" 17398 rs2228561 COL7A1 1294 3 48603018 NM_000094 NP_000085 C/T P595L minus 24326946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 3p21.1 "collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive)" 17399 rs2228561 COL7A1 1294 3 48603018 NM_000094 NP_000085 C/T P595L minus 24326946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 3p21.1 "collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive)" 17400 rs2228575 CHGA 1113 14 92468764 NM_001275 NP_001266 A/G D369N plus 3173268 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 72 0.04 98 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 17401 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 3173269 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.38 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17402 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 4927918 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.38 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17403 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 10714571 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17404 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 24207317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17405 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 24207317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.08 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17406 rs2228576 SCNN1A 6337 12 6327323 NM_001038 NP_001029 A/G T663A minus 24207317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.43 123 "HapMap,doubleHit,freq,cluster" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 17407 rs2228601 CSPG3 1463 19 19190858 NM_004386 NP_004377 A/G A70T plus 3173299 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 76 0.03 98 by freq 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17408 rs2228603 CSPG3 1463 19 19190924 NM_004386 NP_004377 C/T P92S plus 3173301 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 50 0.06 123 "HapMap,freq,cluster" 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17409 rs2228603 CSPG3 1463 19 19190924 NM_004386 NP_004377 C/T P92S plus 3173301 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17410 rs2228603 CSPG3 1463 19 19190924 NM_004386 NP_004377 C/T P92S plus 24064935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17411 rs2228603 CSPG3 1463 19 19190924 NM_004386 NP_004377 C/T P92S plus 24064935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17412 rs2228603 CSPG3 1463 19 19190924 NM_004386 NP_004377 C/T P92S plus 24064935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 19p12 chondroitin sulfate proteoglycan 3 (neurocan) 17413 rs2228612 DNMT1 1786 19 10134372 NM_001379 NP_001370 A/G I311V minus 3173310 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 54 0.19 98 by freq 19p13.2 DNA (cytosine-5-)-methyltransferase 1 17414 rs2228615 ICAM5 7087 19 10264368 NM_003259 NP_003250 A/G A348T plus 3173313 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 44 0.34 111 "by cluster,freq" 19p13.2 "intercellular adhesion molecule 5, telencephalin" 17415 rs2228637 NRP1 8829 10 33536582 NM_003873 NP_003864 C/G F561L minus 3173336 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 76 0.09 98 by freq 10p12 neuropilin 1 17416 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 46 0.35 120 "by cluster,freq" 10p12 neuropilin 1 17417 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 901 AFFY AfAm 8 0.13 120 "by cluster,freq" 10p12 neuropilin 1 17418 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 902 AFFY Caucasian 22 0.09 120 "by cluster,freq" 10p12 neuropilin 1 17419 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 903 AFFY Asian 10 0.2 120 "by cluster,freq" 10p12 neuropilin 1 17420 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 904 AFFY CEPH 8 0.13 120 "by cluster,freq" 10p12 neuropilin 1 17421 rs2228638 NRP1 8829 10 33515288 NM_003873 NP_003864 A/G V733I minus 3173338 905 AFFY PDpanel 44 0.18 120 "by cluster,freq" 10p12 neuropilin 1 17422 rs2228667 CETP 1071 16 55574780 NM_000078 NP_000069 A/G V455M plus 3173371 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 118 0.03 98 by freq 16q21 "cholesteryl ester transfer protein, plasma" 17423 rs2228672 SELP 6403 1 166297923 NM_003005 NP_002996 G/T S619A minus 3173377 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 134 0.01 108 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 17424 rs2228672 SELP 6403 1 166297923 NM_003005 NP_002996 G/T S619A minus 5111938 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 108 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 17425 rs2228673 SLC6A4 6532 17 25569357 NM_001045 NP_001036 C/G K201N minus 3173378 615 WIAF-CSNP WIAF-CSNP-MITOGPOP5 CORIELL Mixed 102 0.16 98 by freq 17q11.1-q12 "solute carrier family 6 (neurotransmitter transporter, serotonin), member 4" 17426 rs2228949 ADCY8 114 8 132121524 NM_001115 NP_001106 A/G A80T minus 3175912 619 WICVAR MITOGPOP6 CORIELL Mixed 24 0.17 98 by freq 8q24 adenylate cyclase 8 (brain) 17427 rs2228956 ASTN 460 1 173595524 NM_004319 NP_004310 A/G H924R minus 3175920 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.13 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17428 rs2228956 ASTN 460 1 173595524 NM_004319 NP_004310 A/G H924R minus 23690793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17429 rs2228956 ASTN 460 1 173595524 NM_004319 NP_004310 A/G H924R minus 23690793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17430 rs2228956 ASTN 460 1 173595524 NM_004319 NP_004310 A/G H924R minus 23690793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17431 rs2228956 ASTN 460 1 173595524 NM_207108 NP_996991 A/G H924R minus 3175920 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.13 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17432 rs2228956 ASTN 460 1 173595524 NM_207108 NP_996991 A/G H924R minus 23690793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17433 rs2228956 ASTN 460 1 173595524 NM_207108 NP_996991 A/G H924R minus 23690793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17434 rs2228956 ASTN 460 1 173595524 NM_207108 NP_996991 A/G H924R minus 23690793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,freq,cluster" 1q25.2 astrotactin 17435 rs2228965 GJA1 2697 6 121810303 NM_000165 NP_000156 C/T T204M plus 3175929 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.23 98 by freq 6q21-q23.2 "gap junction protein, alpha 1, 43kDa (connexin 43)" 17436 rs2228991 REST 5978 4 57637828 NM_005612 NP_005603 A/G V626I plus 3175956 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.04 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17437 rs2228991 REST 5978 4 57637828 NM_005612 NP_005603 A/G V626I plus 4919297 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.19 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17438 rs2228991 REST 5978 4 57637828 NM_005612 NP_005603 A/G V626I plus 23968309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17439 rs2228991 REST 5978 4 57637828 NM_005612 NP_005603 A/G V626I plus 23968309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17440 rs2228991 REST 5978 4 57637828 NM_005612 NP_005603 A/G V626I plus 23968309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 4q12 RE1-silencing transcription factor 17441 rs2229000 KCNA1 3736 12 4891416 NM_000217 NP_000208 A/G R204H plus 3175966 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.04 98 "HapMap,freq" 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)" 17442 rs2229000 KCNA1 3736 12 4891416 NM_000217 NP_000208 A/G R204H plus 3175966 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 98 "HapMap,freq" 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)" 17443 rs2229000 KCNA1 3736 12 4891416 NM_000217 NP_000208 A/G R204H plus 3175966 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 98 "HapMap,freq" 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)" 17444 rs2229000 KCNA1 3736 12 4891416 NM_000217 NP_000208 A/G R204H plus 3175966 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 98 "HapMap,freq" 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)" 17445 rs2229000 KCNA1 3736 12 4891416 NM_000217 NP_000208 A/G R204H plus 3175966 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,freq" 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)" 17446 rs2229032 ATR 545 3 143660842 NM_001184 NP_001175 A/G R2425Q minus 3176005 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.08 98 by freq 3q22-q24 ataxia telangiectasia and Rad3 related 17447 rs2229080 DCC 1630 18 48686600 NM_005215 NP_005206 C/G R201G plus 3176063 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 17448 rs2229080 DCC 1630 18 48686600 NM_005215 NP_005206 C/G R201G plus 10904080 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 17449 rs2229080 DCC 1630 18 48686600 NM_005215 NP_005206 C/G R201G plus 24087358 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 17450 rs2229080 DCC 1630 18 48686600 NM_005215 NP_005206 C/G R201G plus 24087358 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 17451 rs2229080 DCC 1630 18 48686600 NM_005215 NP_005206 C/G R201G plus 24087358 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 18q21.3 deleted in colorectal carcinoma 17452 rs2229083 SMAD4 4089 18 46829105 NM_005359 NP_005350 G/T W101G plus 3176066 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.14 98 by freq 18q21.1 "SMAD, mothers against DPP homolog 4 (Drosophila)" 17453 rs2229086 FER 2241 5 108309808 NM_005246 NP_005237 C/G L439V plus 3176069 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.13 98 by freq 5q21 fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) 17454 rs2229109 ABCB1 5243 7 86824460 NM_000927 NP_000918 A/G S400N minus 3176096 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.04 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 17455 rs2229109 ABCB1 5243 7 86824460 NM_000927 NP_000918 A/G S400N minus 3189021 527 OEFNER AUTOSOME Stanford Autosome Collection 6 0.5 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 17456 rs2229109 ABCB1 5243 7 86824460 NM_000927 NP_000918 A/G S400N minus 24421031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 17457 rs2229109 ABCB1 5243 7 86824460 NM_000927 NP_000918 A/G S400N minus 24421031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 17458 rs2229109 ABCB1 5243 7 86824460 NM_000927 NP_000918 A/G S400N minus 24421031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 17459 rs2229113 IL10RA 3587 11 117374880 NM_001558 NP_001549 A/G R351G plus 3176101 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.29 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17460 rs2229113 IL10RA 3587 11 117374880 NM_001558 NP_001549 A/G R351G plus 5608134 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.18 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17461 rs2229113 IL10RA 3587 11 117374880 NM_001558 NP_001549 A/G R351G plus 24565558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17462 rs2229113 IL10RA 3587 11 117374880 NM_001558 NP_001549 A/G R351G plus 24565558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17463 rs2229113 IL10RA 3587 11 117374880 NM_001558 NP_001549 A/G R351G plus 24565558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17464 rs2229114 IL10RA 3587 11 117375088 NM_001558 NP_001549 C/T S420L plus 3176102 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 111 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 17465 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 3176104 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.31 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17466 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 3214893 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.19 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17467 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 12343691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17468 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 24612827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17469 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 24612827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17470 rs2229116 RYR3 6263 15 31692702 NM_001036 NP_001027 A/G I731V plus 24612827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 15q14-q15 ryanodine receptor 3 17471 rs2229126 ADRA1A 148 8 26683589 NM_000680 NP_000671 A/T E465D minus 3176114 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.1 123 "by cluster,freq" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 17472 rs2229126 ADRA1A 148 8 26683589 NM_000680 NP_000671 A/T E465D minus 24079631 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 17473 rs2229126 ADRA1A 148 8 26683589 NM_000680 NP_000671 A/T E465D minus 24079631 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 17474 rs2229126 ADRA1A 148 8 26683589 NM_000680 NP_000671 A/T E465D minus 24079631 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p21-p11.2 "adrenergic, alpha-1A-, receptor" 17475 rs2229127 PTGIR 5739 19 51819250 NM_000960 NP_000951 A/G V25M minus 3176115 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.05 123 "by cluster,freq" 19q13.3 prostaglandin I2 (prostacyclin) receptor (IP) 17476 rs2229127 PTGIR 5739 19 51819250 NM_000960 NP_000951 A/G V25M minus 23644301 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 19q13.3 prostaglandin I2 (prostacyclin) receptor (IP) 17477 rs2229127 PTGIR 5739 19 51819250 NM_000960 NP_000951 A/G V25M minus 23644301 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by cluster,freq" 19q13.3 prostaglandin I2 (prostacyclin) receptor (IP) 17478 rs2229127 PTGIR 5739 19 51819250 NM_000960 NP_000951 A/G V25M minus 23644301 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 19q13.3 prostaglandin I2 (prostacyclin) receptor (IP) 17479 rs2229137 PDHA2 5161 4 97119317 NM_005390 NP_005381 A/C M280L plus 3176126 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.03 98 by freq 4q22-q23 pyruvate dehydrogenase (lipoamide) alpha 2 17480 rs2229170 TACR2 6865 10 70834661 NM_001057 NP_001048 A/G R375H minus 3176164 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.23 98 by freq 10q11-q21 tachykinin receptor 2 17481 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 3176169 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.04 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17482 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 6903665 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17483 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 6903665 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17484 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 6903665 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17485 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 6903665 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17486 rs2229175 ARNT 405 1 147608848 NM_001668 NP_001659 A/G R430Q minus 6903665 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17487 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 3176169 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.04 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17488 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 6903665 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17489 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 6903665 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17490 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 6903665 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17491 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 6903665 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17492 rs2229175 ARNT 405 1 147608848 NM_178427 NP_848514 A/G R415Q minus 6903665 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 1q21 aryl hydrocarbon receptor nuclear translocator 17493 rs2229188 CYP51A1 1595 7 91408274 NM_000786 NP_000777 C/T V19A minus 3176185 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.07 98 by freq 7q21.2-q21.3 "cytochrome P450, family 51, subfamily A, polypeptide 1" 17494 rs2229228 PDE4C 5143 19 18190784 NM_000923 NP_000914 A/G R344Q minus 3176228 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.38 98 by freq 19p13.11 "phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila)" 17495 rs2229278 LRP1 4035 12 55864491 NM_002332 NP_002323 G/T V2059L plus 3176282 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.18 98 by freq 12q13-q14 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 17496 rs2229296 ZNF141 7700 4 356596 NM_003441 NP_003432 A/G K124E plus 3176302 619 WICVAR MITOGPOP6 CORIELL Mixed 70 0.03 98 "HapMap,freq" 4p16.3 zinc finger protein 141 (clone pHZ-44) 17497 rs2229296 ZNF141 7700 4 356596 NM_003441 NP_003432 A/G K124E plus 3176302 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 "HapMap,freq" 4p16.3 zinc finger protein 141 (clone pHZ-44) 17498 rs2229304 HOXB3 3213 17 43984592 NM_002146 NP_002137 A/C P82T minus 3176311 619 WICVAR MITOGPOP6 CORIELL Mixed 24 0.38 119 "by doubleHit,freq,cluster" 17q21.3 homeo box B3 17499 rs2229309 NFATC4 4776 14 23908923 NM_004554 NP_004545 C/G G160A plus 3176316 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.36 121 "by cluster,freq" 14q11.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4" 17500 rs2229319 MHC2TA 4261 16 10908823 NM_000246 NP_000237 C/G A658G plus 3176328 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.03 98 by freq 16p13 MHC class II transactivator 17501 rs2229324 FBN1 2200 15 46567923 NM_000138 NP_000129 A/G I1048V minus 3176333 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.04 98 by freq 15q21.1 fibrillin 1 (Marfan syndrome) 17502 rs2229331 HRG 3273 3 187878102 NM_000412 NP_000403 A/G G436R plus 3176341 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.06 98 by freq 3q27 histidine-rich glycoprotein 17503 rs2229333 TGIF 7050 18 3447607 NM_003244 NP_003235 C/T P163L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17504 rs2229333 TGIF 7050 18 3447607 NM_003244 NP_003235 C/T P163L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17505 rs2229333 TGIF 7050 18 3447607 NM_170695 NP_733796 C/T P292L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17506 rs2229333 TGIF 7050 18 3447607 NM_170695 NP_733796 C/T P292L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17507 rs2229333 TGIF 7050 18 3447607 NM_173207 NP_775299 C/T P177L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17508 rs2229333 TGIF 7050 18 3447607 NM_173207 NP_775299 C/T P177L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17509 rs2229333 TGIF 7050 18 3447607 NM_173208 NP_775300 C/T P163L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17510 rs2229333 TGIF 7050 18 3447607 NM_173208 NP_775300 C/T P163L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17511 rs2229333 TGIF 7050 18 3447607 NM_173209 NP_775301 C/T P143L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17512 rs2229333 TGIF 7050 18 3447607 NM_173209 NP_775301 C/T P143L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17513 rs2229333 TGIF 7050 18 3447607 NM_173210 NP_775302 C/T P143L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17514 rs2229333 TGIF 7050 18 3447607 NM_173210 NP_775302 C/T P143L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17515 rs2229333 TGIF 7050 18 3447607 NM_173211 NP_775303 C/T P143L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17516 rs2229333 TGIF 7050 18 3447607 NM_173211 NP_775303 C/T P143L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17517 rs2229333 TGIF 7050 18 3447607 NM_174886 NP_777480 C/T P143L plus 3176343 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17518 rs2229333 TGIF 7050 18 3447607 NM_174886 NP_777480 C/T P143L plus 4936300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by cluster,freq" 18p11.3 TGFB-induced factor (TALE family homeobox) 17519 rs2229357 INHBC 3626 12 56129978 NM_005538 NP_005529 A/G R322Q plus 3176367 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.11 111 "by doubleHit,freq,cluster" 12q13.1 "inhibin, beta C" 17520 rs2229361 SMARCA3 6596 3 150240562 NM_003071 NP_003062 A/G R819H minus 3176373 619 WICVAR MITOGPOP6 CORIELL Mixed 82 0.02 98 by freq 3q25.1-q26.1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3" 17521 rs2229361 SMARCA3 6596 3 150240562 NM_139048 NP_620636 A/G R819H minus 3176373 619 WICVAR MITOGPOP6 CORIELL Mixed 82 0.02 98 by freq 3q25.1-q26.1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3" 17522 rs2229362 BCL6 604 3 188928913 NM_001706 NP_001697 A/G A493T minus 3176375 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.11 102 "by cluster,freq" 3q27 B-cell CLL/lymphoma 6 (zinc finger protein 51) 17523 rs2229362 BCL6 604 3 188928913 NM_001706 NP_001697 A/G A493T minus 3207178 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 102 "by cluster,freq" 3q27 B-cell CLL/lymphoma 6 (zinc finger protein 51) 17524 rs2229362 BCL6 604 3 188928913 NM_138931 NP_620309 A/G A493T minus 3176375 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.11 102 "by cluster,freq" 3q27 B-cell CLL/lymphoma 6 (zinc finger protein 51) 17525 rs2229362 BCL6 604 3 188928913 NM_138931 NP_620309 A/G A493T minus 3207178 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 102 "by cluster,freq" 3q27 B-cell CLL/lymphoma 6 (zinc finger protein 51) 17526 rs2229373 ZNF140 7699 12 132293370 NM_003440 NP_003431 C/T A386V plus 3176388 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.04 108 "HapMap,cluster" 12q24.32-q24.33 zinc finger protein 140 (clone pHZ-39) 17527 rs2229373 ZNF140 7699 12 132293370 NM_003440 NP_003431 C/T A386V plus 3176388 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 108 "HapMap,cluster" 12q24.32-q24.33 zinc finger protein 140 (clone pHZ-39) 17528 rs2229424 FASN 2194 17 77635157 NM_004104 NP_004095 A/G R1694H minus 3176450 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 98 by freq 17q25 fatty acid synthase 17529 rs2229440 SREBF2 6721 22 40601325 NM_004599 NP_004590 A/G V623M plus 3176466 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.05 98 by freq 22q13 sterol regulatory element binding transcription factor 2 17530 rs2229496 IVL 3713 1 149695683 NM_005547 NP_005538 A/G T113A plus 3176524 619 WICVAR MITOGPOP6 CORIELL Mixed 38 0.42 123 "by doubleHit,freq,cluster" 1q21 involucrin 17531 rs2229496 IVL 3713 1 149695683 NM_005547 NP_005538 A/G T113A plus 23870916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1q21 involucrin 17532 rs2229496 IVL 3713 1 149695683 NM_005547 NP_005538 A/G T113A plus 23870916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "by doubleHit,freq,cluster" 1q21 involucrin 17533 rs2229496 IVL 3713 1 149695683 NM_005547 NP_005538 A/G T113A plus 23870916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q21 involucrin 17534 rs2229531 ACP5 54 19 11548195 NM_001611 NP_001602 A/G V200M minus 3176561 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.22 100 "HapMap,freq,cluster" 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 17535 rs2229531 ACP5 54 19 11548195 NM_001611 NP_001602 A/G V200M minus 3176561 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 100 "HapMap,freq,cluster" 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 17536 rs2229531 ACP5 54 19 11548195 NM_001611 NP_001602 A/G V200M minus 3253129 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.08 100 "HapMap,freq,cluster" 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 17537 rs2229532 ACP5 54 19 11548132 NM_001611 NP_001602 A/G V221I minus 3176562 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.08 98 by freq 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 17538 rs2229571 BARD1 580 2 215470970 NM_000465 NP_000456 C/G R378S minus 3176612 619 WICVAR MITOGPOP6 CORIELL Mixed 24 0.25 123 "by doubleHit,submitter,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 17539 rs2229571 BARD1 580 2 215470970 NM_000465 NP_000456 C/G R378S minus 24350567 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 17540 rs2229571 BARD1 580 2 215470970 NM_000465 NP_000456 C/G R378S minus 24350567 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,submitter,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 17541 rs2229571 BARD1 580 2 215470970 NM_000465 NP_000456 C/G R378S minus 24350567 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 2q34-q35 BRCA1 associated RING domain 1 17542 rs2229579 CNR2 1269 1 23946468 NM_001841 NP_001832 C/T H316Y minus 3176621 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.07 123 "by cluster,freq" 1p36.11 cannabinoid receptor 2 (macrophage) 17543 rs2229579 CNR2 1269 1 23946468 NM_001841 NP_001832 C/T H316Y minus 24133592 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1p36.11 cannabinoid receptor 2 (macrophage) 17544 rs2229579 CNR2 1269 1 23946468 NM_001841 NP_001832 C/T H316Y minus 24133592 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p36.11 cannabinoid receptor 2 (macrophage) 17545 rs2229579 CNR2 1269 1 23946468 NM_001841 NP_001832 C/T H316Y minus 24133592 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 1p36.11 cannabinoid receptor 2 (macrophage) 17546 rs2229595 AOC3 8639 17 38257872 NM_003734 NP_003725 A/G R329Q plus 3176637 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.07 98 by freq 17q21 "amine oxidase, copper containing 3 (vascular adhesion protein 1)" 17547 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 3176659 619 WICVAR MITOGPOP6 CORIELL Mixed 14 0.07 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17548 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 12675530 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17549 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 12675530 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17550 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 12675530 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17551 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 12675530 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17552 rs2229616 MC4R 4160 18 56190256 NM_005912 NP_005903 A/G V103I minus 12675530 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 18q22 melanocortin 4 receptor 17553 rs2229617 MC1R 4157 16 88513477 NM_002386 NP_002377 A/G G104S plus 3176660 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.03 98 by freq 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 17554 rs2229629 HK2 3099 2 75028182 NM_000189 NP_000180 A/G R844K plus 3176672 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.25 123 "by doubleHit,submitter,freq,cluster" 2p13 hexokinase 2 17555 rs2229629 HK2 3099 2 75028182 NM_000189 NP_000180 A/G R844K plus 3217045 738 YUSUKE JBIC-ALLELE Japanese (752) 1084 0.13 123 "by doubleHit,submitter,freq,cluster" 2p13 hexokinase 2 17556 rs2229629 HK2 3099 2 75028182 NM_000189 NP_000180 A/G R844K plus 12587268 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 123 "by doubleHit,submitter,freq,cluster" 2p13 hexokinase 2 17557 rs2229629 HK2 3099 2 75028182 NM_000189 NP_000180 A/G R844K plus 28459845 549 KYUGEN CP CEPH (78) 156 0.02 123 "by doubleHit,submitter,freq,cluster" 2p13 hexokinase 2 17558 rs2229629 HK2 3099 2 75028182 NM_000189 NP_000180 A/G R844K plus 28459845 1335 KYUGEN JPK2 Japanese (100) 200 0.1 123 "by doubleHit,submitter,freq,cluster" 2p13 hexokinase 2 17559 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 3176685 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.05 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17560 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 5004937 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.17 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17561 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 12838343 1303 SEQUENOM CEPH CEPH (92) 92 0.33 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17562 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 24364141 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17563 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 24364141 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17564 rs2229642 ITPR3 3710 6 33767450 NM_002224 NP_002215 C/G L2436V plus 24364141 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 17565 rs2229653 SPN 6693 16 29582615 NM_003123 NP_003114 C/T T22I plus 3176698 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.02 98 HapMap 16p11.2 "sialophorin (gpL115, leukosialin, CD43)" 17566 rs2229653 SPN 6693 16 29582615 NM_003123 NP_003114 C/T T22I plus 3176698 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 98 HapMap 16p11.2 "sialophorin (gpL115, leukosialin, CD43)" 17567 rs2229659 SORD 6652 15 43151909 NM_003104 NP_003095 A/C V297L minus 3176705 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.06 98 by freq 15q15.3 sorbitol dehydrogenase 17568 rs2229668 CAPG 822 2 85540641 NM_001747 NP_001738 A/G V41I minus 3176714 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.06 123 "by submitter,freq" 2cen-q24 "capping protein (actin filament), gelsolin-like" 17569 rs2229668 CAPG 822 2 85540641 NM_001747 NP_001738 A/G V41I minus 24295603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq" 2cen-q24 "capping protein (actin filament), gelsolin-like" 17570 rs2229668 CAPG 822 2 85540641 NM_001747 NP_001738 A/G V41I minus 24295603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by submitter,freq" 2cen-q24 "capping protein (actin filament), gelsolin-like" 17571 rs2229668 CAPG 822 2 85540641 NM_001747 NP_001738 A/G V41I minus 24295603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq" 2cen-q24 "capping protein (actin filament), gelsolin-like" 17572 rs2229692 PLCB2 5330 15 38368835 NM_004573 NP_004564 A/G E1091G minus 3176738 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.13 98 "by doubleHit,freq" 15q15 "phospholipase C, beta 2" 17573 rs2229699 LTB 4050 6 31656835 NM_002341 NP_002332 A/C A122D minus 3176746 619 WICVAR MITOGPOP6 CORIELL Mixed 22 0.09 98 by freq 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 17574 rs2229742 NRIP1 8204 21 15261043 NM_003489 NP_003480 C/G R448G minus 3176794 619 WICVAR MITOGPOP6 CORIELL Mixed 24 0.13 123 "HapMap,freq" 21q11.2 nuclear receptor interacting protein 1 17575 rs2229742 NRIP1 8204 21 15261043 NM_003489 NP_003480 C/G R448G minus 3176794 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,freq" 21q11.2 nuclear receptor interacting protein 1 17576 rs2229742 NRIP1 8204 21 15261043 NM_003489 NP_003480 C/G R448G minus 24720030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,freq" 21q11.2 nuclear receptor interacting protein 1 17577 rs2229742 NRIP1 8204 21 15261043 NM_003489 NP_003480 C/G R448G minus 24720030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq" 21q11.2 nuclear receptor interacting protein 1 17578 rs2229742 NRIP1 8204 21 15261043 NM_003489 NP_003480 C/G R448G minus 24720030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,freq" 21q11.2 nuclear receptor interacting protein 1 17579 rs2229769 EMR1 2015 19 6877462 NM_001974 NP_001965 G/T F691C plus 3176821 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.05 98 by freq 19p13.3 "egf-like module containing, mucin-like, hormone receptor-like 1" 17580 rs2229774 RARG 5916 12 51891812 NM_000966 NP_000957 C/T S427L minus 3176826 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.02 120 "HapMap,submitter,freq" 12q13 "retinoic acid receptor, gamma" 17581 rs2229774 RARG 5916 12 51891812 NM_000966 NP_000957 C/T S427L minus 3176826 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 120 "HapMap,submitter,freq" 12q13 "retinoic acid receptor, gamma" 17582 rs2229839 ACE 1636 17 58912765 NM_000789 NP_000780 C/T P351L plus 3176897 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.06 98 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 17583 rs2229857 ADAR 103 1 151387040 NM_001111 NP_001102 A/G K384R minus 3176917 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.48 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17584 rs2229857 ADAR 103 1 151387040 NM_001111 NP_001102 A/G K384R minus 23216656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17585 rs2229857 ADAR 103 1 151387040 NM_001111 NP_001102 A/G K384R minus 23216656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17586 rs2229857 ADAR 103 1 151387040 NM_001111 NP_001102 A/G K384R minus 23216656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17587 rs2229857 ADAR 103 1 151387040 NM_015840 NP_056655 A/G K384R minus 3176917 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.48 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17588 rs2229857 ADAR 103 1 151387040 NM_015840 NP_056655 A/G K384R minus 23216656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17589 rs2229857 ADAR 103 1 151387040 NM_015840 NP_056655 A/G K384R minus 23216656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17590 rs2229857 ADAR 103 1 151387040 NM_015840 NP_056655 A/G K384R minus 23216656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17591 rs2229857 ADAR 103 1 151387040 NM_015841 NP_056656 A/G K384R minus 3176917 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.48 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17592 rs2229857 ADAR 103 1 151387040 NM_015841 NP_056656 A/G K384R minus 23216656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17593 rs2229857 ADAR 103 1 151387040 NM_015841 NP_056656 A/G K384R minus 23216656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17594 rs2229857 ADAR 103 1 151387040 NM_015841 NP_056656 A/G K384R minus 23216656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1q21.1-q21.2 "adenosine deaminase, RNA-specific" 17595 rs2229860 RELN 5649 7 102799778 NM_005045 NP_005036 C/G P1703R minus 3176920 619 WICVAR MITOGPOP6 CORIELL Mixed 12 0.17 98 by freq 7q22 reelin 17596 rs2229860 RELN 5649 7 102799778 NM_173054 NP_774959 C/G P1703R minus 3176920 619 WICVAR MITOGPOP6 CORIELL Mixed 12 0.17 98 by freq 7q22 reelin 17597 rs2229876 RAD51 5888 15 38809343 NM_002875 NP_002866 A/T F259I plus 3176937 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.25 98 by freq 15q15.1 "RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)" 17598 rs2229876 RAD51 5888 15 38809343 NM_133487 NP_597994 A/T F162I plus 3176937 619 WICVAR MITOGPOP6 CORIELL Mixed 44 0.25 98 by freq 15q15.1 "RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)" 17599 rs2229885 SLC1A1 6505 9 4480759 NM_004170 NP_004161 C/G A27G plus 3176947 619 WICVAR MITOGPOP6 CORIELL Mixed 76 0.03 98 by freq 9p24 "solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1" 17600 rs2229954 CACNB3 784 12 47507762 NM_000725 NP_000716 A/G R423H plus 3177022 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.04 98 by freq 12q13 "calcium channel, voltage-dependent, beta 3 subunit" 17601 rs2229967 PPYR1 5540 10 46507084 NM_005972 NP_005963 G/T A99S plus 3177041 619 WICVAR MITOGPOP6 CORIELL Mixed 2 0.5 119 "by doubleHit,freq,cluster" 10q11.2 pancreatic polypeptide receptor 1 17602 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 3177078 619 WICVAR MITOGPOP6 CORIELL Mixed 50 1 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17603 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 6903663 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17604 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 6903663 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17605 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 6903663 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17606 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 6903663 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17607 rs2229996 APC 324 5 112203677 NM_000038 NP_000029 C/G T1496S plus 6903663 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 5q21-q22 adenomatosis polyposis coli 17608 rs2230033 KCNJ15 3772 21 38593346 NM_002243 NP_002234 A/G G98D plus 3177124 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.44 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17609 rs2230033 KCNJ15 3772 21 38593346 NM_002243 NP_002234 A/G G98D plus 4016196 634 PERLEGEN NCBI|NIHPDR NIHPDR 7 0.29 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17610 rs2230033 KCNJ15 3772 21 38593346 NM_002243 NP_002234 A/G G98D plus 4932899 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.32 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17611 rs2230033 KCNJ15 3772 21 38593346 NM_170736 NP_733932 A/G G98D plus 3177124 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.44 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17612 rs2230033 KCNJ15 3772 21 38593346 NM_170736 NP_733932 A/G G98D plus 4016196 634 PERLEGEN NCBI|NIHPDR NIHPDR 7 0.29 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17613 rs2230033 KCNJ15 3772 21 38593346 NM_170736 NP_733932 A/G G98D plus 4932899 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.32 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17614 rs2230033 KCNJ15 3772 21 38593346 NM_170737 NP_733933 A/G G98D plus 3177124 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.44 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17615 rs2230033 KCNJ15 3772 21 38593346 NM_170737 NP_733933 A/G G98D plus 4016196 634 PERLEGEN NCBI|NIHPDR NIHPDR 7 0.29 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17616 rs2230033 KCNJ15 3772 21 38593346 NM_170737 NP_733933 A/G G98D plus 4932899 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.32 119 "by doubleHit,submitter,freq,cluster" 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 17617 rs2230048 IGF2R 3482 6 160459759 NM_000876 NP_000867 A/T T1395S plus 3177139 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.03 98 by freq 6q26 insulin-like growth factor 2 receptor 17618 rs2230055 IFNW1 3467 9 21131287 NM_002177 NP_002168 A/C R95S minus 3177147 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.07 116 "HapMap,freq,cluster" 9p22 "interferon, omega 1" 17619 rs2230055 IFNW1 3467 9 21131287 NM_002177 NP_002168 A/C R95S minus 4936502 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.1 116 "HapMap,freq,cluster" 9p22 "interferon, omega 1" 17620 rs2230055 IFNW1 3467 9 21131287 NM_002177 NP_002168 A/C R95S minus 10532940 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,freq,cluster" 9p22 "interferon, omega 1" 17621 rs2230086 TBL3 10607 16 1965603 NM_006453 NP_006444 A/G Q293R plus 3177184 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.06 123 by freq 16p13.3 transducin (beta)-like 3 17622 rs2230098 ARID4A 5926 14 57900731 NM_002892 NP_002883 A/G N724S plus 3177197 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.11 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17623 rs2230098 ARID4A 5926 14 57900731 NM_002892 NP_002883 A/G N724S plus 3177197 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17624 rs2230098 ARID4A 5926 14 57900731 NM_002892 NP_002883 A/G N724S plus 24721593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17625 rs2230098 ARID4A 5926 14 57900731 NM_002892 NP_002883 A/G N724S plus 24721593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17626 rs2230098 ARID4A 5926 14 57900731 NM_002892 NP_002883 A/G N724S plus 24721593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17627 rs2230098 ARID4A 5926 14 57900731 NM_023000 NP_075376 A/G N724S plus 3177197 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.11 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17628 rs2230098 ARID4A 5926 14 57900731 NM_023000 NP_075376 A/G N724S plus 3177197 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17629 rs2230098 ARID4A 5926 14 57900731 NM_023000 NP_075376 A/G N724S plus 24721593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17630 rs2230098 ARID4A 5926 14 57900731 NM_023000 NP_075376 A/G N724S plus 24721593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17631 rs2230098 ARID4A 5926 14 57900731 NM_023000 NP_075376 A/G N724S plus 24721593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17632 rs2230098 ARID4A 5926 14 57900731 NM_023001 NP_075377 A/G N724S plus 3177197 619 WICVAR MITOGPOP6 CORIELL Mixed 28 0.11 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17633 rs2230098 ARID4A 5926 14 57900731 NM_023001 NP_075377 A/G N724S plus 3177197 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17634 rs2230098 ARID4A 5926 14 57900731 NM_023001 NP_075377 A/G N724S plus 24721593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17635 rs2230098 ARID4A 5926 14 57900731 NM_023001 NP_075377 A/G N724S plus 24721593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17636 rs2230098 ARID4A 5926 14 57900731 NM_023001 NP_075377 A/G N724S plus 24721593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 14q22.3-q23.1 AT rich interactive domain 4A (RBP1-like) 17637 rs2230129 TAF1C 9013 16 82770935 NM_005679 NP_005670 A/T L575M minus 3177232 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.33 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17638 rs2230129 TAF1C 9013 16 82770935 NM_005679 NP_005670 A/T L575M minus 3215097 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.39 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17639 rs2230129 TAF1C 9013 16 82770935 NM_005679 NP_005670 A/T L575M minus 5605065 693 EGP_SNPS PDR90 NIHPDR 176 0.41 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17640 rs2230129 TAF1C 9013 16 82770935 NM_139353 NP_647610 A/T L481M minus 3177232 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.33 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17641 rs2230129 TAF1C 9013 16 82770935 NM_139353 NP_647610 A/T L481M minus 3215097 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.39 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17642 rs2230129 TAF1C 9013 16 82770935 NM_139353 NP_647610 A/T L481M minus 5605065 693 EGP_SNPS PDR90 NIHPDR 176 0.41 123 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17643 rs2230131 TAF1C 9013 16 82770280 NM_005679 NP_005670 C/T P793L minus 3177234 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.37 110 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17644 rs2230131 TAF1C 9013 16 82770280 NM_005679 NP_005670 C/T P793L minus 5605072 693 EGP_SNPS PDR90 NIHPDR 174 0.11 110 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17645 rs2230131 TAF1C 9013 16 82770280 NM_139353 NP_647610 C/T P699L minus 3177234 619 WICVAR MITOGPOP6 CORIELL Mixed 30 0.37 110 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17646 rs2230131 TAF1C 9013 16 82770280 NM_139353 NP_647610 C/T P699L minus 5605072 693 EGP_SNPS PDR90 NIHPDR 174 0.11 110 "by cluster,freq" 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 17647 rs2230143 VIL2 7430 6 159158818 NM_003379 NP_003370 C/G A494P minus 3177248 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.06 123 "by cluster,freq" 6q25.2-q26 villin 2 (ezrin) 17648 rs2230143 VIL2 7430 6 159158818 NM_003379 NP_003370 C/G A494P minus 23808685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q25.2-q26 villin 2 (ezrin) 17649 rs2230143 VIL2 7430 6 159158818 NM_003379 NP_003370 C/G A494P minus 23808685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q25.2-q26 villin 2 (ezrin) 17650 rs2230143 VIL2 7430 6 159158818 NM_003379 NP_003370 C/G A494P minus 23808685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 6q25.2-q26 villin 2 (ezrin) 17651 rs2230165 MYOM1 8736 18 3178873 NM_003803 NP_003794 C/T T215M minus 3177273 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.11 123 "by cluster,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 17652 rs2230165 MYOM1 8736 18 3178873 NM_003803 NP_003794 C/T T215M minus 23447967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 17653 rs2230165 MYOM1 8736 18 3178873 NM_003803 NP_003794 C/T T215M minus 23447967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by cluster,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 17654 rs2230165 MYOM1 8736 18 3178873 NM_003803 NP_003794 C/T T215M minus 23447967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 17655 rs2230169 MAP4 4134 3 47933000 NM_002375 NP_002366 C/G E441Q minus 3177278 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.13 123 "HapMap,freq" 3p21 microtubule-associated protein 4 17656 rs2230169 MAP4 4134 3 47933000 NM_002375 NP_002366 C/G E441Q minus 3177278 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq" 3p21 microtubule-associated protein 4 17657 rs2230169 MAP4 4134 3 47933000 NM_002375 NP_002366 C/G E441Q minus 24240580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq" 3p21 microtubule-associated protein 4 17658 rs2230169 MAP4 4134 3 47933000 NM_002375 NP_002366 C/G E441Q minus 24240580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 3p21 microtubule-associated protein 4 17659 rs2230169 MAP4 4134 3 47933000 NM_002375 NP_002366 C/G E441Q minus 24240580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 3p21 microtubule-associated protein 4 17660 rs2230179 ACADVL 37 17 7064076 NM_000018 NP_000009 C/T L17F plus 3177289 619 WICVAR MITOGPOP6 CORIELL Mixed 22 0.09 123 by freq 17p13-p11 "acyl-Coenzyme A dehydrogenase, very long chain" 17661 rs2230180 ACADVL 37 17 7068431 NM_000018 NP_000009 A/G E534K plus 3177290 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.04 98 by freq 17p13-p11 "acyl-Coenzyme A dehydrogenase, very long chain" 17662 rs2230190 PDE4A 5141 19 10439058 NM_006202 NP_006193 C/T H569Y plus 3177302 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.02 98 HapMap 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 17663 rs2230190 PDE4A 5141 19 10439058 NM_006202 NP_006193 C/T H569Y plus 3177302 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 19p13.2 "phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)" 17664 rs2230199 C3 718 19 6669387 NM_000064 NP_000055 C/G R102G minus 3177312 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.15 98 by freq 19p13.3-p13.2 complement component 3 17665 rs2230210 C3 718 19 6629030 NM_000064 NP_000055 A/C S1619R minus 3177323 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.04 98 by freq 19p13.3-p13.2 complement component 3 17666 rs2230216 DF 1675 19 814220 NM_001928 NP_001919 C/G I248M plus 3177329 619 WICVAR MITOGPOP6 CORIELL Mixed 56 1 123 "by submitter,freq" 19p13.3 D component of complement (adipsin) 17667 rs2230216 DF 1675 19 814220 NM_001928 NP_001919 C/G I248M plus 24190494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq" 19p13.3 D component of complement (adipsin) 17668 rs2230216 DF 1675 19 814220 NM_001928 NP_001919 C/G I248M plus 24190494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 19p13.3 D component of complement (adipsin) 17669 rs2230216 DF 1675 19 814220 NM_001928 NP_001919 C/G I248M plus 24190494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by submitter,freq" 19p13.3 D component of complement (adipsin) 17670 rs2230229 TNFRSF10A 8797 8 23105237 NM_003844 NP_003835 A/G R441K minus 3177342 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.03 121 "by cluster,freq" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 17671 rs2230239 MCM3 4172 6 52237452 NM_002388 NP_002379 C/T R774W minus 3177353 619 WICVAR MITOGPOP6 CORIELL Mixed 56 0.02 100 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17672 rs2230239 MCM3 4172 6 52237452 NM_002388 NP_002379 C/T R774W minus 3255150 506 NCBI NIHPDR NIHPDR 170 0.01 100 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17673 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 3177354 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.1 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17674 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 3177354 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17675 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 3255148 506 NCBI NIHPDR NIHPDR 170 0.17 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17676 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 24374408 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17677 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 24374408 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17678 rs2230240 MCM3 4172 6 52237443 NM_002388 NP_002379 A/G E777K minus 24374408 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p12 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) 17679 rs2230241 POLD1 5424 19 55596886 NM_002691 NP_002682 A/G R119H plus 3177355 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.26 98 "by doubleHit,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 17680 rs2230243 POLD1 5424 19 55598191 NM_002691 NP_002682 C/T P347L plus 3177357 619 WICVAR MITOGPOP6 CORIELL Mixed 60 0.07 98 by freq 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 17681 rs2230273 FUT4 2526 11 93917710 NM_002033 NP_002024 A/G I255V plus 3177391 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.17 121 "by doubleHit,freq" 11q21 "fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)" 17682 rs2230281 GALNT4 8693 12 88419986 NM_003774 NP_003765 C/T I270T minus 3177399 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.13 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17683 rs2230281 GALNT4 8693 12 88419986 NM_003774 NP_003765 C/T I270T minus 23432655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17684 rs2230281 GALNT4 8693 12 88419986 NM_003774 NP_003765 C/T I270T minus 23432655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.32 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17685 rs2230281 GALNT4 8693 12 88419986 NM_003774 NP_003765 C/T I270T minus 23432655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17686 rs2230283 GALNT4 8693 12 88419279 NM_003774 NP_003765 A/G V506I minus 3177401 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.13 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17687 rs2230283 GALNT4 8693 12 88419279 NM_003774 NP_003765 A/G V506I minus 24443826 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17688 rs2230283 GALNT4 8693 12 88419279 NM_003774 NP_003765 A/G V506I minus 24443826 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17689 rs2230283 GALNT4 8693 12 88419279 NM_003774 NP_003765 A/G V506I minus 24443826 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 12q21.3-q22 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) 17690 rs2230294 GPI 2821 19 39576672 NM_000175 NP_000166 A/G R308H plus 3177413 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.06 98 by freq 19q13.1 glucose phosphate isomerase 17691 rs2230301 EPRS 2058 1 216586020 NM_004446 NP_004437 A/C D236E minus 3177420 619 WICVAR MITOGPOP6 CORIELL Mixed 58 0.34 121 "by cluster,freq" 1q41-q42 glutamyl-prolyl-tRNA synthetase 17692 rs2230339 GPR68 8111 14 90770990 NM_003485 NP_003476 A/G R63Q minus 3177467 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.05 98 "HapMap,freq" 14q31 G protein-coupled receptor 68 17693 rs2230339 GPR68 8111 14 90770990 NM_003485 NP_003476 A/G R63Q minus 3177467 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 98 "HapMap,freq" 14q31 G protein-coupled receptor 68 17694 rs2230344 GPR15 2838 3 99733676 NM_005290 NP_005281 C/T P37S plus 3177472 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.1 123 "by submitter,freq,cluster" 3q11.2-q13.1 G protein-coupled receptor 15 17695 rs2230344 GPR15 2838 3 99733676 NM_005290 NP_005281 C/T P37S plus 4935282 738 YUSUKE JBIC-ALLELE Japanese (752) 1106 0.36 123 "by submitter,freq,cluster" 3q11.2-q13.1 G protein-coupled receptor 15 17696 rs2230344 GPR15 2838 3 99733676 NM_005290 NP_005281 C/T P37S plus 23902473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq,cluster" 3q11.2-q13.1 G protein-coupled receptor 15 17697 rs2230344 GPR15 2838 3 99733676 NM_005290 NP_005281 C/T P37S plus 23902473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 3q11.2-q13.1 G protein-coupled receptor 15 17698 rs2230344 GPR15 2838 3 99733676 NM_005290 NP_005281 C/T P37S plus 23902473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by submitter,freq,cluster" 3q11.2-q13.1 G protein-coupled receptor 15 17699 rs2230390 ITGA3 3675 17 45503724 NM_002204 NP_002195 A/T I268F plus 3177520 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.04 98 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 17700 rs2230390 ITGA3 3675 17 45503724 NM_005501 NP_005492 A/T I268F plus 3177520 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.04 98 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 17701 rs2230399 ICAM3 3385 19 10305603 NM_002162 NP_002153 C/G S525T minus 3177529 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.26 123 "by cluster,freq" 19p13.3-p13.2 intercellular adhesion molecule 3 17702 rs2230399 ICAM3 3385 19 10305603 NM_002162 NP_002153 C/G S525T minus 23756769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 19p13.3-p13.2 intercellular adhesion molecule 3 17703 rs2230399 ICAM3 3385 19 10305603 NM_002162 NP_002153 C/G S525T minus 23756769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 19p13.3-p13.2 intercellular adhesion molecule 3 17704 rs2230399 ICAM3 3385 19 10305603 NM_002162 NP_002153 C/G S525T minus 23756769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.3-p13.2 intercellular adhesion molecule 3 17705 rs2230433 ITGAL 3683 16 30425542 NM_002209 NP_002200 C/G R791T plus 3177564 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.06 123 "by submitter,freq,cluster" 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 17706 rs2230433 ITGAL 3683 16 30425542 NM_002209 NP_002200 C/G R791T plus 4318997 650 MRG IBD-24P "German (24 European Caucasians with inflammatory bowel disease, 15 crohns disease, 9 ulcerative colitis)" 48 0.27 123 "by submitter,freq,cluster" 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 17707 rs2230433 ITGAL 3683 16 30425542 NM_002209 NP_002200 C/G R791T plus 23385867 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 17708 rs2230433 ITGAL 3683 16 30425542 NM_002209 NP_002200 C/G R791T plus 23385867 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by submitter,freq,cluster" 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 17709 rs2230433 ITGAL 3683 16 30425542 NM_002209 NP_002200 C/G R791T plus 23385867 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 16p11.2 "integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)" 17710 rs2230454 MX1 4599 21 41752399 NM_002462 NP_002453 G/T Q611H plus 3177586 619 WICVAR MITOGPOP6 CORIELL Mixed 52 0.08 98 by freq 21q22.3 "myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 17711 rs2230462 PIK3CB 5291 3 139892560 NM_006219 NP_006210 G/T Q672H minus 3177595 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.04 98 by freq 3q22.3 "phosphoinositide-3-kinase, catalytic, beta polypeptide" 17712 rs2230491 AKAP5 9495 14 64005164 NM_004857 NP_004848 C/T P100L plus 3177626 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.05 98 "HapMap,freq" 14q21-q24 A kinase (PRKA) anchor protein 5 17713 rs2230491 AKAP5 9495 14 64005164 NM_004857 NP_004848 C/T P100L plus 3177626 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 98 "HapMap,freq" 14q21-q24 A kinase (PRKA) anchor protein 5 17714 rs2230512 TTK 7272 6 80806273 NM_003318 NP_003309 A/G D758N plus 3177647 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.03 98 by freq 6q13-q21 TTK protein kinase 17715 rs2230516 MERTK 10461 2 112502265 NM_006343 NP_006334 C/T R865W plus 3177652 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.04 98 "HapMap,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17716 rs2230516 MERTK 10461 2 112502265 NM_006343 NP_006334 C/T R865W plus 3177652 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 98 "HapMap,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17717 rs2230517 MERTK 10461 2 112502280 NM_006343 NP_006334 A/G V870I plus 3177653 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.13 123 "by cluster,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17718 rs2230517 MERTK 10461 2 112502280 NM_006343 NP_006334 A/G V870I plus 23254961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17719 rs2230517 MERTK 10461 2 112502280 NM_006343 NP_006334 A/G V870I plus 23254961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17720 rs2230517 MERTK 10461 2 112502280 NM_006343 NP_006334 A/G V870I plus 23254961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 17721 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.02 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17722 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 901 AFFY AfAm 12 0.17 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17723 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 902 AFFY Caucasian 24 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17724 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 903 AFFY Asian 12 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17725 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 904 AFFY CEPH 12 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17726 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 3177659 905 AFFY PDpanel 48 0.04 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17727 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 7988798 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.13 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17728 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 7988798 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17729 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 7988798 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17730 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 23271465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17731 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 23271465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17732 rs2230523 LY64 4064 5 66515139 NM_005582 NP_005573 A/G T430A minus 23271465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17733 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.02 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17734 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 901 AFFY AfAm 12 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17735 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 902 AFFY Caucasian 18 0.06 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17736 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 903 AFFY Asian 10 0.3 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17737 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 904 AFFY CEPH 10 0.3 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17738 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 3177660 905 AFFY PDpanel 44 0.2 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17739 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 7988801 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17740 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 7988801 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17741 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 7988801 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17742 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 23905571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17743 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 23905571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17744 rs2230524 LY64 4064 5 66514485 NM_005582 NP_005573 C/T F648L minus 23905571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 17745 rs2230570 EIF4G1 1981 3 185528112 NM_004953 NP_004944 C/T L1037P plus 3177715 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.05 98 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 17746 rs2230570 EIF4G1 1981 3 185528112 NM_182917 NP_886553 C/T L1233P plus 3177715 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.05 98 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 17747 rs2230570 EIF4G1 1981 3 185528112 NM_198241 NP_937884 C/T L1233P plus 3177715 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.05 98 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 17748 rs2230570 EIF4G1 1981 3 185528112 NM_198242 NP_937885 C/T L1069P plus 3177715 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.05 98 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 17749 rs2230570 EIF4G1 1981 3 185528112 NM_198244 NP_937887 C/T L1146P plus 3177715 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.05 98 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 17750 rs2230590 MST1R 4486 3 49911106 NM_002447 NP_002438 A/G Q523R minus 3177736 619 WICVAR MITOGPOP6 CORIELL Mixed 16 0.5 116 "HapMap,doubleHit,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17751 rs2230590 MST1R 4486 3 49911106 NM_002447 NP_002438 A/G Q523R minus 4074624 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 116 "HapMap,doubleHit,freq,cluster" 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17752 rs2230592 MST1R 4486 3 49911612 NM_002447 NP_002438 A/G N440S minus 3177738 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.04 98 by freq 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17753 rs2230593 MST1R 4486 3 49915082 NM_002447 NP_002438 A/G R322Q minus 3177739 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 98 by freq 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17754 rs2230593 MST1R 4486 3 49915082 NM_002447 NP_002438 A/G R322Q minus 3177739 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 98 by freq 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17755 rs2230593 MST1R 4486 3 49915082 NM_002447 NP_002438 A/G R322Q minus 3177739 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 98 by freq 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17756 rs2230593 MST1R 4486 3 49915082 NM_002447 NP_002438 A/G R322Q minus 3177739 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 98 by freq 3p21.3 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) 17757 rs2230635 CHAF1A 10036 19 4360511 NM_005483 NP_005474 A/G M221V plus 3177784 619 WICVAR MITOGPOP6 CORIELL Mixed 16 0.19 98 by freq 19p13.3 "chromatin assembly factor 1, subunit A (p150)" 17758 rs2230653 HIST1H1C 3006 6 26164583 NM_005319 NP_005310 C/T A18V minus 3177805 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.05 123 "by doubleHit,freq,cluster" 6p21.3 "histone 1, H1c" 17759 rs2230653 HIST1H1C 3006 6 26164583 NM_005319 NP_005310 C/T A18V minus 23939120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 6p21.3 "histone 1, H1c" 17760 rs2230653 HIST1H1C 3006 6 26164583 NM_005319 NP_005310 C/T A18V minus 23939120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21.3 "histone 1, H1c" 17761 rs2230653 HIST1H1C 3006 6 26164583 NM_005319 NP_005310 C/T A18V minus 23939120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.3 "histone 1, H1c" 17762 rs2230660 ZNF239 8187 10 43373019 NM_005674 NP_005665 C/G A172G minus 3177816 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.31 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17763 rs2230660 ZNF239 8187 10 43373019 NM_005674 NP_005665 C/G A172G minus 4936919 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.45 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17764 rs2230660 ZNF239 8187 10 43373019 NM_005674 NP_005665 C/G A172G minus 23573645 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17765 rs2230660 ZNF239 8187 10 43373019 NM_005674 NP_005665 C/G A172G minus 23573645 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17766 rs2230660 ZNF239 8187 10 43373019 NM_005674 NP_005665 C/G A172G minus 23573645 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17767 rs2230661 ZNF239 8187 10 43372909 NM_005674 NP_005665 G/T C209G minus 3177817 619 WICVAR MITOGPOP6 CORIELL Mixed 54 0.41 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17768 rs2230661 ZNF239 8187 10 43372909 NM_005674 NP_005665 G/T C209G minus 4936918 738 YUSUKE JBIC-ALLELE Japanese (752) 1082 0.43 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17769 rs2230661 ZNF239 8187 10 43372909 NM_005674 NP_005665 G/T C209G minus 23573634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17770 rs2230661 ZNF239 8187 10 43372909 NM_005674 NP_005665 G/T C209G minus 23573634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17771 rs2230661 ZNF239 8187 10 43372909 NM_005674 NP_005665 G/T C209G minus 23573634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 10q11.22-q11.23 zinc finger protein 239 17772 rs2230674 ATF1 466 12 49494389 NM_005171 NP_005162 C/G P191A plus 3177832 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.03 123 "by submitter,freq" 12q13 activating transcription factor 1 17773 rs2230674 ATF1 466 12 49494389 NM_005171 NP_005162 C/G P191A plus 24421603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by submitter,freq" 12q13 activating transcription factor 1 17774 rs2230674 ATF1 466 12 49494389 NM_005171 NP_005162 C/G P191A plus 24421603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 12q13 activating transcription factor 1 17775 rs2230674 ATF1 466 12 49494389 NM_005171 NP_005162 C/G P191A plus 24421603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 12q13 activating transcription factor 1 17776 rs2230677 SFRS4 6429 1 29296010 NM_005626 NP_005617 C/G G338A minus 3177835 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.26 119 "by doubleHit,freq,cluster" 1p35.2 "splicing factor, arginine/serine-rich 4" 17777 rs2230678 SFRS4 6429 1 29295957 NM_005626 NP_005617 A/G G356S minus 3177836 619 WICVAR MITOGPOP6 CORIELL Mixed 34 0.26 120 "by doubleHit,freq,cluster" 1p35.2 "splicing factor, arginine/serine-rich 4" 17778 rs2230679 SFRS4 6429 1 29296264 NM_005626 NP_005617 A/C E253D minus 3177837 619 WICVAR MITOGPOP6 CORIELL Mixed 36 0.19 120 "by doubleHit,freq,cluster" 1p35.2 "splicing factor, arginine/serine-rich 4" 17779 rs2230681 PSMD9 5715 12 120789532 NM_002813 NP_002804 C/T V17A plus 3177839 619 WICVAR MITOGPOP6 CORIELL Mixed 32 0.19 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 17780 rs2230681 PSMD9 5715 12 120789532 NM_002813 NP_002804 C/T V17A plus 23936226 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 17781 rs2230681 PSMD9 5715 12 120789532 NM_002813 NP_002804 C/T V17A plus 23936226 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 17782 rs2230681 PSMD9 5715 12 120789532 NM_002813 NP_002804 C/T V17A plus 23936226 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 17783 rs2230720 WFS1 7466 4 6421399 NM_006005 NP_005996 C/T A602V plus 3177888 619 WICVAR MITOGPOP6 CORIELL Mixed 64 0.06 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 17784 rs2230720 WFS1 7466 4 6421399 NM_006005 NP_005996 C/T A602V plus 23369458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 17785 rs2230720 WFS1 7466 4 6421399 NM_006005 NP_005996 C/T A602V plus 23369458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 17786 rs2230720 WFS1 7466 4 6421399 NM_006005 NP_005996 C/T A602V plus 23369458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p16 Wolfram syndrome 1 (wolframin) 17787 rs2230747 CYP4F2 8529 19 15857777 NM_001082 NP_001073 C/T V358M plus 3177921 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.33 98 by freq 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 17788 rs2230748 CD97 976 19 14373489 NM_001784 NP_001775 A/G R274Q plus 3177922 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.04 123 "HapMap,freq" 19p13 CD97 antigen 17789 rs2230748 CD97 976 19 14373489 NM_001784 NP_001775 A/G R274Q plus 3249437 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.44 123 "HapMap,freq" 19p13 CD97 antigen 17790 rs2230748 CD97 976 19 14373489 NM_001784 NP_001775 A/G R274Q plus 3388750 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq" 19p13 CD97 antigen 17791 rs2230748 CD97 976 19 14373489 NM_078481 NP_510966 A/G R367Q plus 3177922 619 WICVAR MITOGPOP6 CORIELL Mixed 46 0.04 123 "HapMap,freq" 19p13 CD97 antigen 17792 rs2230748 CD97 976 19 14373489 NM_078481 NP_510966 A/G R367Q plus 3249437 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.44 123 "HapMap,freq" 19p13 CD97 antigen 17793 rs2230748 CD97 976 19 14373489 NM_078481 NP_510966 A/G R367Q plus 3388750 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq" 19p13 CD97 antigen 17794 rs2230752 ZNF177 7730 19 9353370 NM_003451 NP_003442 A/T I295F plus 3177927 619 WICVAR MITOGPOP6 CORIELL Mixed 26 0.5 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 17795 rs2230752 ZNF177 7730 19 9353370 NM_003451 NP_003442 A/T I295F plus 23400972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 17796 rs2230752 ZNF177 7730 19 9353370 NM_003451 NP_003442 A/T I295F plus 23400972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 17797 rs2230752 ZNF177 7730 19 9353370 NM_003451 NP_003442 A/T I295F plus 23400972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 19p13.2 zinc finger protein 177 17798 rs2230767 SYNJ1 8867 21 32925258 NM_003895 NP_003886 C/T P1547L minus 3177942 619 WICVAR MITOGPOP6 CORIELL Mixed 62 0.03 98 by freq 21q22.2 synaptojanin 1 17799 rs2230770 AKAP1 8165 17 52538002 NM_003488 NP_003479 A/G V60M plus 3177945 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17800 rs2230770 AKAP1 8165 17 52538002 NM_003488 NP_003479 A/G V60M plus 23790776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17801 rs2230770 AKAP1 8165 17 52538002 NM_003488 NP_003479 A/G V60M plus 23790776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17802 rs2230770 AKAP1 8165 17 52538002 NM_003488 NP_003479 A/G V60M plus 23790776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17803 rs2230770 AKAP1 8165 17 52538002 NM_139275 NP_644804 A/G V60M plus 3177945 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.04 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17804 rs2230770 AKAP1 8165 17 52538002 NM_139275 NP_644804 A/G V60M plus 23790776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17805 rs2230770 AKAP1 8165 17 52538002 NM_139275 NP_644804 A/G V60M plus 23790776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17806 rs2230770 AKAP1 8165 17 52538002 NM_139275 NP_644804 A/G V60M plus 23790776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 17q21-q23 A kinase (PRKA) anchor protein 1 17807 rs2230782 NCOA3 8202 20 45698295 NM_006534 NP_006525 C/G Q586H plus 3177957 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.08 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17808 rs2230782 NCOA3 8202 20 45698295 NM_006534 NP_006525 C/G Q586H plus 8383396 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17809 rs2230782 NCOA3 8202 20 45698295 NM_006534 NP_006525 C/G Q586H plus 24697718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17810 rs2230782 NCOA3 8202 20 45698295 NM_006534 NP_006525 C/G Q586H plus 24697718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17811 rs2230782 NCOA3 8202 20 45698295 NM_006534 NP_006525 C/G Q586H plus 24697718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17812 rs2230782 NCOA3 8202 20 45698295 NM_181659 NP_858045 C/G Q586H plus 3177957 619 WICVAR MITOGPOP6 CORIELL Mixed 40 0.08 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17813 rs2230782 NCOA3 8202 20 45698295 NM_181659 NP_858045 C/G Q586H plus 8383396 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17814 rs2230782 NCOA3 8202 20 45698295 NM_181659 NP_858045 C/G Q586H plus 24697718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17815 rs2230782 NCOA3 8202 20 45698295 NM_181659 NP_858045 C/G Q586H plus 24697718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17816 rs2230782 NCOA3 8202 20 45698295 NM_181659 NP_858045 C/G Q586H plus 24697718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 20q12 nuclear receptor coactivator 3 17817 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 3177982 619 WICVAR MITOGPOP6 CORIELL Mixed 16 0.25 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17818 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 12675189 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.4 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17819 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 12675189 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.19 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17820 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 12675189 776 SNP500CANCER AFR1 African / African-American (24) 48 0.31 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17821 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 12675189 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17822 rs2230806 ABCA1 19 9 104700422 NM_005502 NP_005493 A/G R219K minus 12675189 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.48 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17823 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 3177984 619 WICVAR MITOGPOP6 CORIELL Mixed 10 0.2 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17824 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 3241864 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.38 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17825 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 10492941 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17826 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 12675192 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.41 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17827 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 12675192 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.27 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17828 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 12675192 776 SNP500CANCER AFR1 African / African-American (24) 48 0.29 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17829 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 12675192 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17830 rs2230808 ABCA1 19 9 104642359 NM_005502 NP_005493 A/G K1587R minus 12675192 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.42 121 "HapMap,doubleHit,submitter,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 17831 rs2230848 F13A1 2162 6 6167325 NM_000129 NP_000120 A/T M351K minus 3178028 619 WICVAR MITOGPOP6 CORIELL Mixed 48 0.15 98 by freq 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 17832 rs2230849 F2R 2149 5 76064365 NM_001992 NP_001983 A/T Y187N plus 3178029 619 WICVAR MITOGPOP6 CORIELL Mixed 42 0.07 98 by freq 5q13 coagulation factor II (thrombin) receptor 17833 rs2230853 IFNA10 3446 9 21196972 NM_002171 NP_002162 C/G G42A minus 3178035 619 WICVAR MITOGPOP6 CORIELL Mixed 18 0.39 98 by freq 9p22 "interferon, alpha 10" 17834 rs2230912 P2RX7 5027 12 120084916 NM_002562 NP_002553 A/G Q460R plus 3178096 619 WICVAR MITOGPOP6 CORIELL Mixed 50 0.16 123 "HapMap,submitter,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 17835 rs2230912 P2RX7 5027 12 120084916 NM_002562 NP_002553 A/G Q460R plus 3178096 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,submitter,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 17836 rs2230912 P2RX7 5027 12 120084916 NM_002562 NP_002553 A/G Q460R plus 24357605 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 17837 rs2230912 P2RX7 5027 12 120084916 NM_002562 NP_002553 A/G Q460R plus 24357605 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 17838 rs2230912 P2RX7 5027 12 120084916 NM_002562 NP_002553 A/G Q460R plus 24357605 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 17839 rs2231137 ABCG2 9429 4 89418293 NM_004827 NP_004818 A/G V12M minus 20421491 1242 PHARMGKB_PAAR-SJCRH PA130299514 180 0.03 121 "by submitter,freq,cluster" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17840 rs2231137 ABCG2 9429 4 89418293 NM_004827 NP_004818 A/G V12M minus 20421498 1243 PHARMGKB_PAAR-SJCRH PA130299515 396 0.13 121 "by submitter,freq,cluster" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17841 rs2231142 ABCG2 9429 4 89409502 NM_004827 NP_004818 A/C Q141K minus 4922115 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by cluster,freq" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17842 rs2231142 ABCG2 9429 4 89409502 NM_004827 NP_004818 A/C Q141K minus 20421497 1243 PHARMGKB_PAAR-SJCRH PA130299515 394 0.13 123 "by cluster,freq" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17843 rs2231142 ABCG2 9429 4 89409502 NM_004827 NP_004818 A/C Q141K minus 23885505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "by cluster,freq" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17844 rs2231142 ABCG2 9429 4 89409502 NM_004827 NP_004818 A/C Q141K minus 23885505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17845 rs2231142 ABCG2 9429 4 89409502 NM_004827 NP_004818 A/C Q141K minus 23885505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "by cluster,freq" 4q22 "ATP-binding cassette, sub-family G (WHITE), member 2" 17846 rs2231471 CDC23 8697 5 137576875 NM_004661 NP_004652 C/T P3L minus 3178691 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,cluster" 5q31 "CDC23 (cell division cycle 23, yeast, homolog)" 17847 rs2231471 CDC23 8697 5 137576875 NM_004661 NP_004652 C/T P3L minus 3226395 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 "HapMap,cluster" 5q31 "CDC23 (cell division cycle 23, yeast, homolog)" 17848 rs2231495 CECR1 51816 22 16043860 NM_017424 NP_059120 A/G H335R minus 8285836 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 119 "HapMap,doubleHit,submitter,freq" 22q11.2 "cat eye syndrome chromosome region, candidate 1" 17849 rs2231495 CECR1 51816 22 16043860 NM_177405 NP_803124 A/G H94R minus 8285836 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 119 "HapMap,doubleHit,submitter,freq" 22q11.2 "cat eye syndrome chromosome region, candidate 1" 17850 rs2231524 CHRAC1 54108 8 141594509 NM_017444 NP_059140 A/G H126R plus 3237156 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 123 "by cluster,freq" 8q24.3 chromatin accessibility complex 1 17851 rs2231524 CHRAC1 54108 8 141594509 NM_017444 NP_059140 A/G H126R plus 24502719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 8q24.3 chromatin accessibility complex 1 17852 rs2231524 CHRAC1 54108 8 141594509 NM_017444 NP_059140 A/G H126R plus 24502719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8q24.3 chromatin accessibility complex 1 17853 rs2231524 CHRAC1 54108 8 141594509 NM_017444 NP_059140 A/G H126R plus 24502719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 8q24.3 chromatin accessibility complex 1 17854 rs2231687 COX15 1355 10 101463208 NM_004376 NP_004367 C/T F374L minus 23610527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10q24 "COX15 homolog, cytochrome c oxidase assembly protein (yeast)" 17855 rs2231687 COX15 1355 10 101463208 NM_004376 NP_004367 C/T F374L minus 23610527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 10q24 "COX15 homolog, cytochrome c oxidase assembly protein (yeast)" 17856 rs2231687 COX15 1355 10 101463208 NM_004376 NP_004367 C/T F374L minus 23610527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q24 "COX15 homolog, cytochrome c oxidase assembly protein (yeast)" 17857 rs2231838 SPINLW1 57119 20 43604869 NM_020398 NP_065131 A/G H92R minus 23570458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17858 rs2231838 SPINLW1 57119 20 43604869 NM_020398 NP_065131 A/G H92R minus 23570458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17859 rs2231838 SPINLW1 57119 20 43604869 NM_020398 NP_065131 A/G H92R minus 23570458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17860 rs2231838 SPINLW1 57119 20 43604869 NM_181502 NP_852479 A/G H76R minus 23570458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17861 rs2231838 SPINLW1 57119 20 43604869 NM_181502 NP_852479 A/G H76R minus 23570458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17862 rs2231838 SPINLW1 57119 20 43604869 NM_181502 NP_852479 A/G H76R minus 23570458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 20q12-q13.2 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)" 17863 rs2231909 ATF7IP 55729 12 14469159 NM_018179 NP_060649 A/T N348I plus 24338980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq" 12p13.2 activating transcription factor 7 interacting protein 17864 rs2231909 ATF7IP 55729 12 14469159 NM_018179 NP_060649 A/T N348I plus 24338980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq" 12p13.2 activating transcription factor 7 interacting protein 17865 rs2231909 ATF7IP 55729 12 14469159 NM_018179 NP_060649 A/T N348I plus 24338980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq" 12p13.2 activating transcription factor 7 interacting protein 17866 rs2231983 NETO2 81831 16 45674845 NM_018092 NP_060562 A/T S456T minus 12379549 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,cluster" 16q11 neuropilin (NRP) and tolloid (TLL)-like 2 17867 rs2232016 HRMT1L6 55170 1 107311960 NM_018137 NP_060607 C/T A135V plus 4934862 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.2 123 "by submitter,freq,cluster" 1p13.3 protein arginine N-methyltransferase 6 17868 rs2232016 HRMT1L6 55170 1 107311960 NM_018137 NP_060607 C/T A135V plus 23850099 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq,cluster" 1p13.3 protein arginine N-methyltransferase 6 17869 rs2232016 HRMT1L6 55170 1 107311960 NM_018137 NP_060607 C/T A135V plus 23850099 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by submitter,freq,cluster" 1p13.3 protein arginine N-methyltransferase 6 17870 rs2232016 HRMT1L6 55170 1 107311960 NM_018137 NP_060607 C/T A135V plus 23850099 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by submitter,freq,cluster" 1p13.3 protein arginine N-methyltransferase 6 17871 rs2232176 PLA2G3 50487 22 29860687 NM_015715 NP_056530 G/T S70A minus 23790588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 17872 rs2232176 PLA2G3 50487 22 29860687 NM_015715 NP_056530 G/T S70A minus 23790588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 17873 rs2232176 PLA2G3 50487 22 29860687 NM_015715 NP_056530 G/T S70A minus 23790588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 22q11.2-q13.2 "phospholipase A2, group III" 17874 rs2232183 PLA2G3 50487 22 29857514 NM_015715 NP_056530 A/G R378Q minus 24703511 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 22q11.2-q13.2 "phospholipase A2, group III" 17875 rs2232183 PLA2G3 50487 22 29857514 NM_015715 NP_056530 A/G R378Q minus 24703511 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q11.2-q13.2 "phospholipase A2, group III" 17876 rs2232183 PLA2G3 50487 22 29857514 NM_015715 NP_056530 A/G R378Q minus 24703511 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.2-q13.2 "phospholipase A2, group III" 17877 rs2232251 HEMK1 51409 3 50589994 NM_016173 NP_057257 G/T H200Q plus 23235850 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 3p21.3 HEMK homolog 7kb 17878 rs2232251 HEMK1 51409 3 50589994 NM_016173 NP_057257 G/T H200Q plus 23235850 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 3p21.3 HEMK homolog 7kb 17879 rs2232251 HEMK1 51409 3 50589994 NM_016173 NP_057257 G/T H200Q plus 23235850 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.3 HEMK homolog 7kb 17880 rs2232328 G6PC2 57818 2 169590053 NM_021176 NP_066999 C/G S342C plus 4956627 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 17881 rs2232328 G6PC2 57818 2 169590053 NM_021176 NP_066999 C/G S342C plus 23333840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 17882 rs2232328 G6PC2 57818 2 169590053 NM_021176 NP_066999 C/G S342C plus 23333840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 17883 rs2232328 G6PC2 57818 2 169590053 NM_021176 NP_066999 C/G S342C plus 23333840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 2q24-q31 "glucose-6-phosphatase, catalytic, 2" 17884 rs2232350 IL17RB 55540 3 53874218 NM_018725 NP_061195 C/T I451T plus 23945769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.1 interleukin 17 receptor B 17885 rs2232350 IL17RB 55540 3 53874218 NM_018725 NP_061195 C/T I451T plus 23945769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 3p21.1 interleukin 17 receptor B 17886 rs2232350 IL17RB 55540 3 53874218 NM_018725 NP_061195 C/T I451T plus 23945769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 3p21.1 interleukin 17 receptor B 17887 rs2232386 K6HF 9119 12 51114007 NM_004693 NP_004684 C/G P117A minus 24386294 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "by cluster,freq" 12q13 cytokeratin type II 17888 rs2232386 K6HF 9119 12 51114007 NM_004693 NP_004684 C/G P117A minus 24386294 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12q13 cytokeratin type II 17889 rs2232386 K6HF 9119 12 51114007 NM_004693 NP_004684 C/G P117A minus 24386294 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 12q13 cytokeratin type II 17890 rs2232387 K6HF 9119 12 51113875 NM_004693 NP_004684 A/G A161T minus 23356973 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q13 cytokeratin type II 17891 rs2232387 K6HF 9119 12 51113875 NM_004693 NP_004684 A/G A161T minus 23356973 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 12q13 cytokeratin type II 17892 rs2232387 K6HF 9119 12 51113875 NM_004693 NP_004684 A/G A161T minus 23356973 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 12q13 cytokeratin type II 17893 rs2232402 K6HF 9119 12 51108731 NM_004693 NP_004684 A/G I367V minus 23356845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 12q13 cytokeratin type II 17894 rs2232402 K6HF 9119 12 51108731 NM_004693 NP_004684 A/G I367V minus 23356845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 12q13 cytokeratin type II 17895 rs2232402 K6HF 9119 12 51108731 NM_004693 NP_004684 A/G I367V minus 23356845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 12q13 cytokeratin type II 17896 rs2232405 K6HF 9119 12 51108409 NM_004693 NP_004684 C/T M427T minus 3236752 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 120 "by cluster,freq" 12q13 cytokeratin type II 17897 rs2232430 ZNF305 9753 6 28467165 NM_014724 NP_055539 A/G R294K minus 23916623 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 6p22.2-p21.3 zinc finger protein 305 17898 rs2232430 ZNF305 9753 6 28467165 NM_014724 NP_055539 A/G R294K minus 23916623 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6p22.2-p21.3 zinc finger protein 305 17899 rs2232430 ZNF305 9753 6 28467165 NM_014724 NP_055539 A/G R294K minus 23916623 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 6p22.2-p21.3 zinc finger protein 305 17900 rs2232434 ZNF305 9753 6 28466872 NM_014724 NP_055539 A/G N392D minus 24336040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6p22.2-p21.3 zinc finger protein 305 17901 rs2232434 ZNF305 9753 6 28466872 NM_014724 NP_055539 A/G N392D minus 24336040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6p22.2-p21.3 zinc finger protein 305 17902 rs2232434 ZNF305 9753 6 28466872 NM_014724 NP_055539 A/G N392D minus 24336040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p22.2-p21.3 zinc finger protein 305 17903 rs2232470 TSPYL4 23270 6 116681776 NM_021648 NP_067680 G/T R30L minus 24463357 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 6q22.31 TSPY-like 4 17904 rs2232470 TSPYL4 23270 6 116681776 NM_021648 NP_067680 G/T R30L minus 24463357 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by doubleHit,submitter,freq,cluster" 6q22.31 TSPY-like 4 17905 rs2232470 TSPYL4 23270 6 116681776 NM_021648 NP_067680 G/T R30L minus 24463357 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 6q22.31 TSPY-like 4 17906 rs2232565 LALBA 3906 12 47249288 NM_002289 NP_002280 A/G I46V minus 23977527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 12q13 "lactalbumin, alpha-" 17907 rs2232565 LALBA 3906 12 47249288 NM_002289 NP_002280 A/G I46V minus 23977527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 12q13 "lactalbumin, alpha-" 17908 rs2232565 LALBA 3906 12 47249288 NM_002289 NP_002280 A/G I46V minus 23977527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 12q13 "lactalbumin, alpha-" 17909 rs2232580 LBP 3929 20 36408359 NM_004139 NP_004130 C/T P9L plus 16215277 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17910 rs2232580 LBP 3929 20 36408359 NM_004139 NP_004130 C/T P9L plus 16215277 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17911 rs2232580 LBP 3929 20 36408359 NM_004139 NP_004130 C/T P9L plus 16215277 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17912 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 7988345 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17913 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 7988345 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17914 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 7988345 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17915 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 16215360 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17916 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 16215360 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17917 rs2232607 LBP 3929 20 36426747 NM_004139 NP_004130 A/G D283G plus 16215360 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by submitter,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17918 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 7988355 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17919 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 7988355 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.14 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17920 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 7988355 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17921 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 16215376 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17922 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 16215376 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17923 rs2232613 LBP 3929 20 36431069 NM_004139 NP_004130 C/T P333L plus 16215376 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17924 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 7988369 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.23 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17925 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 7988369 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17926 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 7988369 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17927 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 8387959 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.07 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17928 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 16215395 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.23 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17929 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 16215395 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17930 rs2232618 LBP 3929 20 36435175 NM_004139 NP_004130 C/T F436L plus 16215395 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "HapMap,doubleHit,freq,cluster" 20q11.23-q12 lipopolysaccharide binding protein 17931 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 7988371 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 40 0.1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17932 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 7988371 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17933 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 7988371 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17934 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 16215404 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.09 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17935 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 16215404 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17936 rs2232619 LBP 3929 20 36436003 NM_004139 NP_004130 A/G A445T plus 16215404 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 17937 rs2232636 LIG4 3981 13 107661480 NM_002312 NP_002303 A/G W46X minus 6903852 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17938 rs2232636 LIG4 3981 13 107661480 NM_002312 NP_002303 A/G W46X minus 6903852 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17939 rs2232636 LIG4 3981 13 107661480 NM_002312 NP_002303 A/G W46X minus 6903852 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17940 rs2232636 LIG4 3981 13 107661480 NM_002312 NP_002303 A/G W46X minus 6903852 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17941 rs2232636 LIG4 3981 13 107661480 NM_002312 NP_002303 A/G W46X minus 6903852 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17942 rs2232636 LIG4 3981 13 107661480 NM_206937 NP_996820 A/G W46X minus 6903852 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17943 rs2232636 LIG4 3981 13 107661480 NM_206937 NP_996820 A/G W46X minus 6903852 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17944 rs2232636 LIG4 3981 13 107661480 NM_206937 NP_996820 A/G W46X minus 6903852 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17945 rs2232636 LIG4 3981 13 107661480 NM_206937 NP_996820 A/G W46X minus 6903852 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17946 rs2232636 LIG4 3981 13 107661480 NM_206937 NP_996820 A/G W46X minus 6903852 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17947 rs2232642 LIG4 3981 13 107659049 NM_002312 NP_002303 A/G A857T minus 4329063 693 EGP_SNPS PDR90 NIHPDR 176 0.02 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17948 rs2232642 LIG4 3981 13 107659049 NM_002312 NP_002303 A/G A857T minus 23325706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17949 rs2232642 LIG4 3981 13 107659049 NM_002312 NP_002303 A/G A857T minus 23325706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17950 rs2232642 LIG4 3981 13 107659049 NM_002312 NP_002303 A/G A857T minus 23325706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17951 rs2232642 LIG4 3981 13 107659049 NM_206937 NP_996820 A/G A857T minus 4329063 693 EGP_SNPS PDR90 NIHPDR 176 0.02 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17952 rs2232642 LIG4 3981 13 107659049 NM_206937 NP_996820 A/G A857T minus 23325706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17953 rs2232642 LIG4 3981 13 107659049 NM_206937 NP_996820 A/G A857T minus 23325706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17954 rs2232642 LIG4 3981 13 107659049 NM_206937 NP_996820 A/G A857T minus 23325706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q33-q34 "ligase IV, DNA, ATP-dependent" 17955 rs2232700 SERPINA10 51156 14 93826203 NM_016186 NP_057270 A/T T161S minus 3220015 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.41 123 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 17956 rs2232700 SERPINA10 51156 14 93826203 NM_016186 NP_057270 A/T T161S minus 6771644 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 17957 rs2232700 SERPINA10 51156 14 93826203 NM_016186 NP_057270 A/T T161S minus 24134340 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 17958 rs2232700 SERPINA10 51156 14 93826203 NM_016186 NP_057270 A/T T161S minus 24134340 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 17959 rs2232700 SERPINA10 51156 14 93826203 NM_016186 NP_057270 A/T T161S minus 24134340 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" 17960 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 3180174 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17961 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 3238213 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17962 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 17349522 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17963 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 23202862 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17964 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 23202862 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17965 rs2232816 CGI-01 51603 1 168484696 NM_014955 NP_055770 A/G M19V plus 23202862 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17966 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 3180174 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17967 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 3238213 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17968 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 17349522 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17969 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 23202862 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17970 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 23202862 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17971 rs2232816 CGI-01 51603 1 168484696 NM_015935 NP_057019 A/G M105V plus 23202862 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 1q24-q25.3 CGI-01 protein 17972 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 2075790 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17973 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 2075790 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17974 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 3212931 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.2 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17975 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 24668733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17976 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 24668733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17977 rs2232950 SCGB1D2 10647 11 61767439 NM_006551 NP_006542 C/T P53L plus 24668733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 11q13 "secretoglobin, family 1D, member 2" 17978 rs2233213 MOCS2 4338 5 52433762 NM_004531 NP_004522 A/G T50A minus 23984393 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 5q11 molybdenum cofactor synthesis 2 17979 rs2233213 MOCS2 4338 5 52433762 NM_004531 NP_004522 A/G T50A minus 23984393 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 5q11 molybdenum cofactor synthesis 2 17980 rs2233213 MOCS2 4338 5 52433762 NM_004531 NP_004522 A/G T50A minus 23984393 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 5q11 molybdenum cofactor synthesis 2 17981 rs2233295 TNIP1 10318 5 150409645 NM_006058 NP_006049 C/T A260V minus 23766269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by submitter,freq,cluster" 5q32-q33.1 TNFAIP3 interacting protein 1 17982 rs2233295 TNIP1 10318 5 150409645 NM_006058 NP_006049 C/T A260V minus 23766269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by submitter,freq,cluster" 5q32-q33.1 TNFAIP3 interacting protein 1 17983 rs2233295 TNIP1 10318 5 150409645 NM_006058 NP_006049 C/T A260V minus 23766269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 5q32-q33.1 TNFAIP3 interacting protein 1 17984 rs2233369 ABI3 51225 17 44648905 NM_016428 NP_057512 A/G R44Q plus 3180791 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.07 123 "HapMap,submitter,freq,cluster" 17q21.3 "ABI gene family, member 3" 17985 rs2233369 ABI3 51225 17 44648905 NM_016428 NP_057512 A/G R44Q plus 3226342 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.09 123 "HapMap,submitter,freq,cluster" 17q21.3 "ABI gene family, member 3" 17986 rs2233369 ABI3 51225 17 44648905 NM_016428 NP_057512 A/G R44Q plus 24112458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 17q21.3 "ABI gene family, member 3" 17987 rs2233369 ABI3 51225 17 44648905 NM_016428 NP_057512 A/G R44Q plus 24112458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 17q21.3 "ABI gene family, member 3" 17988 rs2233369 ABI3 51225 17 44648905 NM_016428 NP_057512 A/G R44Q plus 24112458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 17q21.3 "ABI gene family, member 3" 17989 rs2233384 NEU2 4759 2 233722919 NM_005383 NP_005374 A/C S11R plus 23871576 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 2q37 sialidase 2 (cytosolic sialidase) 17990 rs2233384 NEU2 4759 2 233722919 NM_005383 NP_005374 A/C S11R plus 23871576 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 2q37 sialidase 2 (cytosolic sialidase) 17991 rs2233384 NEU2 4759 2 233722919 NM_005383 NP_005374 A/C S11R plus 23871576 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q37 sialidase 2 (cytosolic sialidase) 17992 rs2233385 NEU2 4759 2 233723008 NM_005383 NP_005374 A/G R41Q plus 23871586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 2q37 sialidase 2 (cytosolic sialidase) 17993 rs2233385 NEU2 4759 2 233723008 NM_005383 NP_005374 A/G R41Q plus 23871586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q37 sialidase 2 (cytosolic sialidase) 17994 rs2233385 NEU2 4759 2 233723008 NM_005383 NP_005374 A/G R41Q plus 23871586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by cluster,freq" 2q37 sialidase 2 (cytosolic sialidase) 17995 rs2233463 ALG3 10195 3 185446083 NM_005787 NP_005778 A/G I107V minus 24411641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 by freq 3q27.3 "asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)" 17996 rs2233463 ALG3 10195 3 185446083 NM_005787 NP_005778 A/G I107V minus 24411641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 3q27.3 "asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)" 17997 rs2233463 ALG3 10195 3 185446083 NM_005787 NP_005778 A/G I107V minus 24411641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27.3 "asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)" 17998 rs2233531 NUBP1 4682 16 10745414 NM_002484 NP_002475 C/G P39A plus 3227901 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.09 100 "HapMap,freq,cluster" 16p13.2 "nucleotide binding protein 1 (MinD homolog, E. coli)" 17999 rs2233531 NUBP1 4682 16 10745414 NM_002484 NP_002475 C/G P39A plus 3562799 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 100 "HapMap,freq,cluster" 16p13.2 "nucleotide binding protein 1 (MinD homolog, E. coli)" 18000 rs2233558 OR2S2 56656 9 35948047 NM_019897 NP_063950 A/G R7G minus 4925618 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.27 120 "by doubleHit,freq,cluster" 9p13.1-13.3 "olfactory receptor, family 2, subfamily S, member 2" 18001 rs2233564 OR2S2 56656 9 35947669 NM_019897 NP_063950 A/G M133V minus 4925619 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.27 108 "by doubleHit,freq,cluster" 9p13.1-13.3 "olfactory receptor, family 2, subfamily S, member 2" 18002 rs2233578 PAX4 5078 7 126848502 NM_006193 NP_006184 C/T R133W minus 23356899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q32 paired box gene 4 18003 rs2233578 PAX4 5078 7 126848502 NM_006193 NP_006184 C/T R133W minus 23356899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 7q32 paired box gene 4 18004 rs2233578 PAX4 5078 7 126848502 NM_006193 NP_006184 C/T R133W minus 23356899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 7q32 paired box gene 4 18005 rs2233580 PAX4 5078 7 126847501 NM_006193 NP_006184 A/G R192H minus 23954797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q32 paired box gene 4 18006 rs2233580 PAX4 5078 7 126847501 NM_006193 NP_006184 A/G R192H minus 23954797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q32 paired box gene 4 18007 rs2233580 PAX4 5078 7 126847501 NM_006193 NP_006184 A/G R192H minus 23954797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 7q32 paired box gene 4 18008 rs2233901 SEMG2 6407 20 43284508 NM_003008 NP_002999 A/G S274N plus 8337938 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,submitter,freq" 20q12-q13.1 semenogelin II 18009 rs2233901 SEMG2 6407 20 43284508 NM_003008 NP_002999 A/G S274N plus 8337938 1303 SEQUENOM CEPH CEPH (92) 92 0.11 123 "HapMap,doubleHit,submitter,freq" 20q12-q13.1 semenogelin II 18010 rs2233901 SEMG2 6407 20 43284508 NM_003008 NP_002999 A/G S274N plus 24695221 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq" 20q12-q13.1 semenogelin II 18011 rs2233901 SEMG2 6407 20 43284508 NM_003008 NP_002999 A/G S274N plus 24695221 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,submitter,freq" 20q12-q13.1 semenogelin II 18012 rs2233901 SEMG2 6407 20 43284508 NM_003008 NP_002999 A/G S274N plus 24695221 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq" 20q12-q13.1 semenogelin II 18013 rs2233919 SMUG1 23583 12 52863985 NM_014311 NP_055126 C/T Q3X minus 4318944 506 NCBI NIHPDR NIHPDR 574 0.01 103 "by cluster,freq" 12q13.11-q13.3 single-strand selective monofunctional uracil DNA glycosylase 18014 rs2233919 SMUG1 23583 12 52863985 NM_014311 NP_055126 C/T Q3X minus 4384657 693 EGP_SNPS PDR90 NIHPDR 166 0.01 103 "by cluster,freq" 12q13.11-q13.3 single-strand selective monofunctional uracil DNA glycosylase 18015 rs2233920 SMUG1 23583 12 52863948 NM_014311 NP_055126 G/T G15V minus 4384658 693 EGP_SNPS PDR90 NIHPDR 164 0.02 103 "by cluster,freq" 12q13.11-q13.3 single-strand selective monofunctional uracil DNA glycosylase 18016 rs2234027 TBCC 6903 6 42821285 NM_003192 NP_003183 C/T P169S minus 4935934 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.05 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18017 rs2234027 TBCC 6903 6 42821285 NM_003192 NP_003183 C/T P169S minus 23955175 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18018 rs2234027 TBCC 6903 6 42821285 NM_003192 NP_003183 C/T P169S minus 23955175 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18019 rs2234027 TBCC 6903 6 42821285 NM_003192 NP_003183 C/T P169S minus 23955175 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18020 rs2234028 TBCC 6903 6 42821252 NM_003192 NP_003183 C/T P180S minus 23955163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18021 rs2234028 TBCC 6903 6 42821252 NM_003192 NP_003183 C/T P180S minus 23955163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18022 rs2234028 TBCC 6903 6 42821252 NM_003192 NP_003183 C/T P180S minus 23955163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 6pter-p12.1 tubulin-specific chaperone c 18023 rs2234079 ETV7 51513 6 36447114 NM_016135 NP_057219 C/T P212L minus 3247389 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.14 123 "by cluster,freq" 6p21 ets variant gene 7 (TEL2 oncogene) 18024 rs2234079 ETV7 51513 6 36447114 NM_016135 NP_057219 C/T P212L minus 23990531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p21 ets variant gene 7 (TEL2 oncogene) 18025 rs2234079 ETV7 51513 6 36447114 NM_016135 NP_057219 C/T P212L minus 23990531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 6p21 ets variant gene 7 (TEL2 oncogene) 18026 rs2234079 ETV7 51513 6 36447114 NM_016135 NP_057219 C/T P212L minus 23990531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "by cluster,freq" 6p21 ets variant gene 7 (TEL2 oncogene) 18027 rs2234146 TNFAIP2 7127 14 102669809 NM_006291 NP_006282 C/T T580M plus 8486573 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 117 "by cluster,freq" 14q32 "tumor necrosis factor, alpha-induced protein 2" 18028 rs2234163 TNFRSF14 8764 1 2525414 NM_003820 NP_003811 A/G A117T minus 16359065 693 EGP_SNPS PDR90 NIHPDR 162 0.02 120 "by cluster,freq" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 18029 rs2234167 TNFRSF14 8764 1 2522390 NM_003820 NP_003811 A/G V241I minus 3209976 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 120 "HapMap,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 18030 rs2234167 TNFRSF14 8764 1 2522390 NM_003820 NP_003811 A/G V241I minus 16359082 693 EGP_SNPS PDR90 NIHPDR 176 0.14 120 "HapMap,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 18031 rs2234167 TNFRSF14 8764 1 2522390 NM_003820 NP_003811 A/G V241I minus 16359082 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 120 "HapMap,freq,cluster" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 18032 rs2234237 TREM1 54210 6 41358444 NM_018643 NP_061113 A/T T25S minus 23952381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells 1 18033 rs2234237 TREM1 54210 6 41358444 NM_018643 NP_061113 A/T T25S minus 23952381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by submitter,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells 1 18034 rs2234237 TREM1 54210 6 41358444 NM_018643 NP_061113 A/T T25S minus 23952381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by submitter,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells 1 18035 rs2234268 TSPAN-1 10103 1 46362084 NM_005727 NP_005718 A/G V87M plus 3181790 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 1p34.1 tetraspan 1 18036 rs2234331 TUBA8 51807 22 16983682 NM_018943 NP_061816 C/T A128V plus 12526998 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,submitter,cluster" 22q11.1 "tubulin, alpha 8" 18037 rs2234333 TUBA8 51807 22 16984201 NM_018943 NP_061816 A/G Q301R plus 24210483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q11.1 "tubulin, alpha 8" 18038 rs2234333 TUBA8 51807 22 16984201 NM_018943 NP_061816 A/G Q301R plus 24210483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 22q11.1 "tubulin, alpha 8" 18039 rs2234333 TUBA8 51807 22 16984201 NM_018943 NP_061816 A/G Q301R plus 24210483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 22q11.1 "tubulin, alpha 8" 18040 rs2234355 CXCR6 10663 3 45962984 NM_006564 NP_006555 A/G E3K plus 23268103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21 chemokine (C-X-C motif) receptor 6 18041 rs2234355 CXCR6 10663 3 45962984 NM_006564 NP_006555 A/G E3K plus 23268103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 3p21 chemokine (C-X-C motif) receptor 6 18042 rs2234355 CXCR6 10663 3 45962984 NM_006564 NP_006555 A/G E3K plus 23268103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 3p21 chemokine (C-X-C motif) receptor 6 18043 rs2234455 UBQLN3 50613 11 5485728 NM_017481 NP_059509 C/T M546T minus 24533204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq" 11p15 ubiquilin 3 18044 rs2234455 UBQLN3 50613 11 5485728 NM_017481 NP_059509 C/T M546T minus 24533204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq" 11p15 ubiquilin 3 18045 rs2234455 UBQLN3 50613 11 5485728 NM_017481 NP_059509 C/T M546T minus 24533204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq" 11p15 ubiquilin 3 18046 rs2234500 VAX2 25806 2 71071877 NM_012476 NP_036608 C/G P254R plus 3204629 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.17 123 "by cluster,freq" 2p13 ventral anterior homeobox 2 18047 rs2234500 VAX2 25806 2 71071877 NM_012476 NP_036608 C/G P254R plus 23876044 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 2p13 ventral anterior homeobox 2 18048 rs2234500 VAX2 25806 2 71071877 NM_012476 NP_036608 C/G P254R plus 23876044 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by cluster,freq" 2p13 ventral anterior homeobox 2 18049 rs2234500 VAX2 25806 2 71071877 NM_012476 NP_036608 C/G P254R plus 23876044 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 2p13 ventral anterior homeobox 2 18050 rs2234634 SLC39A2 29986 14 20537863 NM_014579 NP_055394 A/G M80V plus 8819890 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18051 rs2234634 SLC39A2 29986 14 20537863 NM_014579 NP_055394 A/G M80V plus 8819890 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18052 rs2234634 SLC39A2 29986 14 20537863 NM_014579 NP_055394 A/G M80V plus 8819890 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18053 rs2234634 SLC39A2 29986 14 20537863 NM_014579 NP_055394 A/G M80V plus 8819890 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18054 rs2234634 SLC39A2 29986 14 20537863 NM_014579 NP_055394 A/G M80V plus 8819890 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18055 rs2234636 SLC39A2 29986 14 20538991 NM_014579 NP_055394 C/T F115L plus 8819888 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.27 121 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18056 rs2234636 SLC39A2 29986 14 20538991 NM_014579 NP_055394 C/T F115L plus 8819888 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.3 121 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18057 rs2234636 SLC39A2 29986 14 20538991 NM_014579 NP_055394 C/T F115L plus 8819888 776 SNP500CANCER AFR1 African / African-American (24) 46 0.13 121 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18058 rs2234636 SLC39A2 29986 14 20538991 NM_014579 NP_055394 C/T F115L plus 8819888 777 SNP500CANCER HISP1 Hispanic (23) 46 0.39 121 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18059 rs2234636 SLC39A2 29986 14 20538991 NM_014579 NP_055394 C/T F115L plus 8819888 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.25 121 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18060 rs2234637 SLC39A2 29986 14 20539108 NM_014579 NP_055394 C/T H154Y plus 8819886 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18061 rs2234637 SLC39A2 29986 14 20539108 NM_014579 NP_055394 C/T H154Y plus 8819886 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18062 rs2234637 SLC39A2 29986 14 20539108 NM_014579 NP_055394 C/T H154Y plus 8819886 776 SNP500CANCER AFR1 African / African-American (24) 46 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18063 rs2234637 SLC39A2 29986 14 20539108 NM_014579 NP_055394 C/T H154Y plus 8819886 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18064 rs2234637 SLC39A2 29986 14 20539108 NM_014579 NP_055394 C/T H154Y plus 8819886 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 116 "by cluster,freq" 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 18065 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 4325280 649 FHCRC POPU1 USA (20) 40 0.1 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18066 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 12675495 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 190 0.12 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18067 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 12675495 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.14 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18068 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 12675495 776 SNP500CANCER AFR1 African / African-American (24) 42 0.21 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18069 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 12675495 777 SNP500CANCER HISP1 Hispanic (23) 42 0.05 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18070 rs2234671 IL8RA 3577 2 218854614 NM_000634 NP_000625 C/G S276T minus 12675495 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 120 "by submitter,freq,cluster" 2q35 "interleukin 8 receptor, alpha" 18071 rs2234697 EPHX1 2052 1 222323310 NM_000120 NP_000111 C/T R49C plus 5586493 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18072 rs2234697 EPHX1 2052 1 222323310 NM_000120 NP_000111 C/T R49C plus 5586493 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18073 rs2234697 EPHX1 2052 1 222323310 NM_000120 NP_000111 C/T R49C plus 5586493 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18074 rs2234697 EPHX1 2052 1 222323310 NM_000120 NP_000111 C/T R49C plus 5586493 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18075 rs2234697 EPHX1 2052 1 222323310 NM_000120 NP_000111 C/T R49C plus 5586493 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18076 rs2234916 KCNE2 9992 21 34664669 NM_172201 NP_751951 A/G T8A plus 28461943 1347 PHARMGKB_PAT PA129986109 754 0.01 123 "by cluster,freq" 21q22.12 "potassium voltage-gated channel, Isk-related family, member 2" 18077 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 3235282 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18078 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 5586491 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.2 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18079 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 5586491 775 SNP500CANCER CAUC1 Caucasian (31) 56 0.21 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18080 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 5586491 776 SNP500CANCER AFR1 African / African-American (24) 48 0.31 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18081 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 5586491 777 SNP500CANCER HISP1 Hispanic (23) 46 0.15 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18082 rs2234922 EPHX1 2052 1 222333141 NM_000120 NP_000111 A/G H139R plus 5586491 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.11 120 "by cluster,freq" 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 18083 rs2234942 CCNH 902 5 86744285 NM_001239 NP_001230 G/T R28L minus 2667788 506 NCBI NIHPDR NIHPDR 186 0.01 110 "by cluster,freq" 5q13.3-q14 cyclin H 18084 rs2234942 CCNH 902 5 86744285 NM_001239 NP_001230 G/T R28L minus 4329079 693 EGP_SNPS PDR90 NIHPDR 174 0.01 110 "by cluster,freq" 5q13.3-q14 cyclin H 18085 rs2234947 GRM8 2918 7 126004052 NM_000845 NP_000836 A/G R392Q minus 869738 506 NCBI NIHPDR NIHPDR 180 0.01 100 "by cluster,freq" 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 18086 rs2234949 MPG 4350 16 75771 NM_002434 NP_002425 G/T A298S plus 869726 506 NCBI NIHPDR NIHPDR 488 0 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 18087 rs2234949 MPG 4350 16 75771 NM_002434 NP_002425 G/T A298S plus 4388617 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 18088 rs2234951 GSTA2 2939 6 52725697 NM_000846 NP_000837 C/T P110S minus 869780 506 NCBI NIHPDR NIHPDR 92 0.02 100 "by cluster,freq" 6p12.1 glutathione S-transferase A2 18089 rs2234955 GSTZ1 2954 14 76865273 NM_001513 NP_001504 A/C N78H plus 869751 506 NCBI NIHPDR NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18090 rs2234955 GSTZ1 2954 14 76865273 NM_001513 NP_001504 A/C N78H plus 8830042 693 EGP_SNPS PDR90 NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18091 rs2234955 GSTZ1 2954 14 76865273 NM_145870 NP_665877 A/C N133H plus 869751 506 NCBI NIHPDR NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18092 rs2234955 GSTZ1 2954 14 76865273 NM_145870 NP_665877 A/C N133H plus 8830042 693 EGP_SNPS PDR90 NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18093 rs2234955 GSTZ1 2954 14 76865273 NM_145871 NP_665878 A/C N91H plus 869751 506 NCBI NIHPDR NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18094 rs2234955 GSTZ1 2954 14 76865273 NM_145871 NP_665878 A/C N91H plus 8830042 693 EGP_SNPS PDR90 NIHPDR 170 0.01 117 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 18095 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 3188986 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.07 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18096 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 4479878 506 NCBI NIHPDR NIHPDR 164 0.07 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18097 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6903669 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.06 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18098 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6903669 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18099 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6903669 776 SNP500CANCER AFR1 African / African-American (24) 46 0.22 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18100 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6903669 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18101 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6903669 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18102 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6904800 693 EGP_SNPS PDR90 NIHPDR 164 0.06 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18103 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 6904800 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18104 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 23582468 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18105 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 23582468 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18106 rs2234997 ATM 472 11 107611653 NM_000051 NP_000042 A/T D126E plus 23582468 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18107 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 3188990 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18108 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 4479886 506 NCBI NIHPDR NIHPDR 178 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18109 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 6904852 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18110 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 23582565 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18111 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 23582565 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18112 rs2235000 ATM 472 11 107626943 NM_000051 NP_000042 A/G G514D plus 23582565 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18113 rs2235006 ATM 472 11 107627910 NM_000051 NP_000042 C/T F582L plus 3188996 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 98 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18114 rs2235011 ATM 472 11 107633448 NM_000051 NP_000042 A/T T761S plus 3189001 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 98 HapMap 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18115 rs2235011 ATM 472 11 107633448 NM_000051 NP_000042 A/T T761S plus 3189001 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 18116 rs2235171 SLC5A4 6527 22 30974754 NM_014227 NP_055042 C/T A46T plus 3189205 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 123 "HapMap,freq,cluster" 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 18117 rs2235171 SLC5A4 6527 22 30974754 NM_014227 NP_055042 C/T A46T plus 3189205 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 18118 rs2235171 SLC5A4 6527 22 30974754 NM_014227 NP_055042 C/T A46T plus 23634466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 18119 rs2235171 SLC5A4 6527 22 30974754 NM_014227 NP_055042 C/T A46T plus 23634466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,freq,cluster" 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 18120 rs2235171 SLC5A4 6527 22 30974754 NM_014227 NP_055042 C/T A46T plus 23634466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 18121 rs2235324 TMPRSS6 164656 22 35810224 NM_153019 NP_694564 C/T K253E plus 8007461 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 18122 rs2235324 TMPRSS6 164656 22 35810224 NM_153609 NP_705837 C/T K253E plus 8007461 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 18123 rs2235542 LAMB3 3914 1 206196210 NM_000228 NP_000219 C/T N181D plus 3189671 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.24 123 "by cluster,freq" 1q32 "laminin, beta 3" 18124 rs2235542 LAMB3 3914 1 206196210 NM_000228 NP_000219 C/T N181D plus 24155097 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 1q32 "laminin, beta 3" 18125 rs2235542 LAMB3 3914 1 206196210 NM_000228 NP_000219 C/T N181D plus 24155097 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32 "laminin, beta 3" 18126 rs2235542 LAMB3 3914 1 206196210 NM_000228 NP_000219 C/T N181D plus 24155097 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1q32 "laminin, beta 3" 18127 rs2235587 PSMF1 9491 20 1063919 NM_006814 NP_006805 C/T H174R minus 3189728 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.48 120 "by doubleHit,freq,cluster" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 18128 rs2235587 PSMF1 9491 20 1063919 NM_178578 NP_848693 C/T H174R minus 3189728 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.48 120 "by doubleHit,freq,cluster" 20p13 "proteasome (prosome, macropain) inhibitor subunit 1 (PI31)" 18129 rs2235937 PTPRU 10076 1 29452525 NM_005704 NP_005695 A/G N940S plus 3190173 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.48 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18130 rs2235937 PTPRU 10076 1 29452525 NM_005704 NP_005695 A/G N940S plus 23849901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18131 rs2235937 PTPRU 10076 1 29452525 NM_005704 NP_005695 A/G N940S plus 23849901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18132 rs2235937 PTPRU 10076 1 29452525 NM_005704 NP_005695 A/G N940S plus 23849901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18133 rs2235937 PTPRU 10076 1 29452525 NM_133177 NP_573438 A/G N930S plus 3190173 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.48 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18134 rs2235937 PTPRU 10076 1 29452525 NM_133177 NP_573438 A/G N930S plus 23849901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18135 rs2235937 PTPRU 10076 1 29452525 NM_133177 NP_573438 A/G N930S plus 23849901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18136 rs2235937 PTPRU 10076 1 29452525 NM_133177 NP_573438 A/G N930S plus 23849901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18137 rs2235937 PTPRU 10076 1 29452525 NM_133178 NP_573439 A/G N930S plus 3190173 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.48 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18138 rs2235937 PTPRU 10076 1 29452525 NM_133178 NP_573439 A/G N930S plus 23849901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18139 rs2235937 PTPRU 10076 1 29452525 NM_133178 NP_573439 A/G N930S plus 23849901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18140 rs2235937 PTPRU 10076 1 29452525 NM_133178 NP_573439 A/G N930S plus 23849901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by submitter,freq,cluster" 1p35.3-p35.1 "protein tyrosine phosphatase, receptor type, U" 18141 rs2235967 ZFYVE26 23503 14 67319252 NM_015346 NP_056161 C/T C1457Y plus 3190210 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.03 123 "HapMap,submitter,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 18142 rs2235967 ZFYVE26 23503 14 67319252 NM_015346 NP_056161 C/T C1457Y plus 21180237 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 123 "HapMap,submitter,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 18143 rs2235967 ZFYVE26 23503 14 67319252 NM_015346 NP_056161 C/T C1457Y plus 24707354 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,submitter,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 18144 rs2235967 ZFYVE26 23503 14 67319252 NM_015346 NP_056161 C/T C1457Y plus 24707354 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 18145 rs2235967 ZFYVE26 23503 14 67319252 NM_015346 NP_056161 C/T C1457Y plus 24707354 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 18146 rs2236005 MYO18B 84700 22 24747534 NM_032608 NP_115997 A/G Q2347R plus 3190263 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.21 123 "by doubleHit,submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 18147 rs2236005 MYO18B 84700 22 24747534 NM_032608 NP_115997 A/G Q2347R plus 23557096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "by doubleHit,submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 18148 rs2236005 MYO18B 84700 22 24747534 NM_032608 NP_115997 A/G Q2347R plus 23557096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 18149 rs2236005 MYO18B 84700 22 24747534 NM_032608 NP_115997 A/G Q2347R plus 23557096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.18 123 "by doubleHit,submitter,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 18150 rs2236225 MTHFD1 4522 14 63978598 NM_005956 NP_005947 C/T R653Q minus 24601855 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 18151 rs2236225 MTHFD1 4522 14 63978598 NM_005956 NP_005947 C/T R653Q minus 24601855 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 18152 rs2236225 MTHFD1 4522 14 63978598 NM_005956 NP_005947 C/T R653Q minus 24601855 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 14q24 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" 18153 rs2236235 PLEKHH1 57475 14 67099066 XM_375087 XP_375087 C/T R511Q minus 3190556 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.29 123 "HapMap,freq,cluster" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 18154 rs2236235 PLEKHH1 57475 14 67099066 XM_375087 XP_375087 C/T R511Q minus 3190556 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.21 123 "HapMap,freq,cluster" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 18155 rs2236235 PLEKHH1 57475 14 67099066 XM_375087 XP_375087 C/T R511Q minus 24707145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "HapMap,freq,cluster" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 18156 rs2236235 PLEKHH1 57475 14 67099066 XM_375087 XP_375087 C/T R511Q minus 24707145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 18157 rs2236235 PLEKHH1 57475 14 67099066 XM_375087 XP_375087 C/T R511Q minus 24707145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 18158 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 3190590 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18159 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 8829966 870 WTB-CW MS UK (MRC MS cohort) 44 0.11 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18160 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 8829966 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18161 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 8829966 1303 SEQUENOM CEPH CEPH (92) 92 0.08 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18162 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 24128671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18163 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 24128671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18164 rs2236264 LGMN 5641 14 92268833 NM_005606 NP_005597 A/G V18I minus 24128671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 14q32.1 legumain 18165 rs2236316 NIN 51199 14 50294167 NM_016350 NP_057434 C/G P1117A plus 3190655 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18166 rs2236316 NIN 51199 14 50294167 NM_016350 NP_057434 C/G P1117A plus 3190655 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18167 rs2236316 NIN 51199 14 50294167 NM_016350 NP_057434 C/G P1117A plus 24596674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18168 rs2236316 NIN 51199 14 50294167 NM_016350 NP_057434 C/G P1117A plus 24596674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18169 rs2236316 NIN 51199 14 50294167 NM_016350 NP_057434 C/G P1117A plus 24596674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18170 rs2236316 NIN 51199 14 50294167 NM_020921 NP_065972 C/G P1094A plus 3190655 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18171 rs2236316 NIN 51199 14 50294167 NM_020921 NP_065972 C/G P1094A plus 3190655 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18172 rs2236316 NIN 51199 14 50294167 NM_020921 NP_065972 C/G P1094A plus 24596674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18173 rs2236316 NIN 51199 14 50294167 NM_020921 NP_065972 C/G P1094A plus 24596674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18174 rs2236316 NIN 51199 14 50294167 NM_020921 NP_065972 C/G P1094A plus 24596674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18175 rs2236316 NIN 51199 14 50294167 NM_182944 NP_891989 C/G P1094A plus 3190655 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18176 rs2236316 NIN 51199 14 50294167 NM_182944 NP_891989 C/G P1094A plus 3190655 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18177 rs2236316 NIN 51199 14 50294167 NM_182944 NP_891989 C/G P1094A plus 24596674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18178 rs2236316 NIN 51199 14 50294167 NM_182944 NP_891989 C/G P1094A plus 24596674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18179 rs2236316 NIN 51199 14 50294167 NM_182944 NP_891989 C/G P1094A plus 24596674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18180 rs2236316 NIN 51199 14 50294167 NM_182945 NP_891990 C/G P1094A plus 3190655 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18181 rs2236316 NIN 51199 14 50294167 NM_182945 NP_891990 C/G P1094A plus 3190655 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18182 rs2236316 NIN 51199 14 50294167 NM_182945 NP_891990 C/G P1094A plus 24596674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18183 rs2236316 NIN 51199 14 50294167 NM_182945 NP_891990 C/G P1094A plus 24596674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18184 rs2236316 NIN 51199 14 50294167 NM_182945 NP_891990 C/G P1094A plus 24596674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18185 rs2236316 NIN 51199 14 50294167 NM_182946 NP_891991 C/G P1111A plus 3190655 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.23 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18186 rs2236316 NIN 51199 14 50294167 NM_182946 NP_891991 C/G P1111A plus 3190655 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18187 rs2236316 NIN 51199 14 50294167 NM_182946 NP_891991 C/G P1111A plus 24596674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18188 rs2236316 NIN 51199 14 50294167 NM_182946 NP_891991 C/G P1111A plus 24596674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18189 rs2236316 NIN 51199 14 50294167 NM_182946 NP_891991 C/G P1111A plus 24596674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 14q22.1 ninein (GSK3B interacting protein) 18190 rs2236338 GZMB 3002 14 24170122 NM_004131 NP_004122 A/G Y247H plus 3190690 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.21 123 "HapMap,submitter,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 18191 rs2236338 GZMB 3002 14 24170122 NM_004131 NP_004122 A/G Y247H plus 3190690 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 123 "HapMap,submitter,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 18192 rs2236338 GZMB 3002 14 24170122 NM_004131 NP_004122 A/G Y247H plus 23799424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 18193 rs2236338 GZMB 3002 14 24170122 NM_004131 NP_004122 A/G Y247H plus 23799424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,submitter,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 18194 rs2236338 GZMB 3002 14 24170122 NM_004131 NP_004122 A/G Y247H plus 23799424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 18195 rs2236358 IMAGE3451454 116841 1 224242497 NM_053052 NP_444280 C/T V154M minus 3190714 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.34 123 "by submitter,freq,cluster" 1q42.13 SVAP1 protein 18196 rs2236358 IMAGE3451454 116841 1 224242497 NM_053052 NP_444280 C/T V154M minus 3190714 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by submitter,freq,cluster" 1q42.13 SVAP1 protein 18197 rs2236358 IMAGE3451454 116841 1 224242497 NM_053052 NP_444280 C/T V154M minus 23863980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 1q42.13 SVAP1 protein 18198 rs2236358 IMAGE3451454 116841 1 224242497 NM_053052 NP_444280 C/T V154M minus 23863980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by submitter,freq,cluster" 1q42.13 SVAP1 protein 18199 rs2236358 IMAGE3451454 116841 1 224242497 NM_053052 NP_444280 C/T V154M minus 23863980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by submitter,freq,cluster" 1q42.13 SVAP1 protein 18200 rs2236359 IMAGE3451454 116841 1 224242179 NM_053052 NP_444280 C/T R48G minus 24270899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q42.13 SVAP1 protein 18201 rs2236359 IMAGE3451454 116841 1 224242179 NM_053052 NP_444280 C/T R48G minus 24270899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1q42.13 SVAP1 protein 18202 rs2236359 IMAGE3451454 116841 1 224242179 NM_053052 NP_444280 C/T R48G minus 24270899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q42.13 SVAP1 protein 18203 rs2236364 AKAP11 11215 13 41773044 NM_016248 NP_057332 C/G S721C minus 3190721 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 98 by freq 13q13.3 A kinase (PRKA) anchor protein 11 18204 rs2236364 AKAP11 11215 13 41773044 NM_144490 NP_652761 C/G S721C minus 3190721 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 98 by freq 13q13.3 A kinase (PRKA) anchor protein 11 18205 rs2236369 NCR2 9436 6 41417530 NM_004828 NP_004819 C/T S139P plus 3190728 738 YUSUKE JBIC-ALLELE Japanese (752) 724 0.45 121 "by doubleHit,freq,cluster" 6p21.1 natural cytotoxicity triggering receptor 2 18206 rs2236379 PRKCQ 5588 10 6567149 NM_006257 NP_006248 C/T P330L minus 3190742 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.48 98 by freq 10p15 "protein kinase C, theta" 18207 rs2236387 ADPRHL2 54936 1 36226712 NM_017825 NP_060295 C/T E209K minus 3190757 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.35 123 "by cluster,freq" 1p34.3 ADP-ribosylhydrolase like 2 18208 rs2236387 ADPRHL2 54936 1 36226712 NM_017825 NP_060295 C/T E209K minus 24150939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p34.3 ADP-ribosylhydrolase like 2 18209 rs2236387 ADPRHL2 54936 1 36226712 NM_017825 NP_060295 C/T E209K minus 24150939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by cluster,freq" 1p34.3 ADP-ribosylhydrolase like 2 18210 rs2236387 ADPRHL2 54936 1 36226712 NM_017825 NP_060295 C/T E209K minus 24150939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "by cluster,freq" 1p34.3 ADP-ribosylhydrolase like 2 18211 rs2236405 PTCH 5727 9 95291127 NM_000264 NP_000255 A/T T1195S plus 3190796 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.12 106 "by cluster,freq" 9q22.3 patched homolog (Drosophila) 18212 rs2236405 PTCH 5727 9 95291127 NM_000264 NP_000255 A/T T1195S plus 4479835 506 NCBI NIHPDR NIHPDR 78 0.04 106 "by cluster,freq" 9q22.3 patched homolog (Drosophila) 18213 rs2236410 MR1 3140 1 177749893 NM_001531 NP_001522 C/T H39R minus 3190804 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.37 98 by freq 1q25.3 "major histocompatibility complex, class I-related" 18214 rs2236426 ZC3HAV1 56829 7 138221488 NM_020119 NP_064504 C/T R485K plus 24028601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18215 rs2236426 ZC3HAV1 56829 7 138221488 NM_020119 NP_064504 C/T R485K plus 24028601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18216 rs2236426 ZC3HAV1 56829 7 138221488 NM_020119 NP_064504 C/T R485K plus 24028601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18217 rs2236426 ZC3HAV1 56829 7 138221488 NM_024625 NP_078901 C/T R485K plus 24028601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18218 rs2236426 ZC3HAV1 56829 7 138221488 NM_024625 NP_078901 C/T R485K plus 24028601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18219 rs2236426 ZC3HAV1 56829 7 138221488 NM_024625 NP_078901 C/T R485K plus 24028601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 18220 rs2236493 RAGE 5891 14 101765446 NM_014226 NP_055041 C/T Q398R plus 12301161 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 14q32 renal tumor antigen 18221 rs2236493 RAGE 5891 14 101765446 NM_014226 NP_055041 C/T Q398R plus 23803529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 14q32 renal tumor antigen 18222 rs2236493 RAGE 5891 14 101765446 NM_014226 NP_055041 C/T Q398R plus 23803529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 14q32 renal tumor antigen 18223 rs2236493 RAGE 5891 14 101765446 NM_014226 NP_055041 C/T Q398R plus 23803529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 14q32 renal tumor antigen 18224 rs2236639 CESK1 150160 22 15447037 NM_014406 NP_055221 A/G W320R plus 3191096 738 YUSUKE JBIC-ALLELE Japanese (752) 1108 0.36 123 "by submitter,freq,cluster" 22q11.21 T-complex protein 1 18225 rs2236654 IGHMBP2 3508 11 68460604 NM_002180 NP_002171 A/G R694W minus 3191120 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.03 120 "by doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 18226 rs2236700 MC5R 4161 18 13816391 NM_005913 NP_005904 C/G F209L plus 3191191 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.12 123 "HapMap,submitter,freq,cluster" 18p11.2 melanocortin 5 receptor 18227 rs2236700 MC5R 4161 18 13816391 NM_005913 NP_005904 C/G F209L plus 23482559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 18p11.2 melanocortin 5 receptor 18228 rs2236700 MC5R 4161 18 13816391 NM_005913 NP_005904 C/G F209L plus 23482559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,submitter,freq,cluster" 18p11.2 melanocortin 5 receptor 18229 rs2236700 MC5R 4161 18 13816391 NM_005913 NP_005904 C/G F209L plus 23482559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 18p11.2 melanocortin 5 receptor 18230 rs2236729 SUHW2 140883 22 21167511 NM_080764 NP_542942 G/T E256A plus 3191231 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.2 suppressor of hairy wing homolog 2 (Drosophila) 18231 rs2236729 SUHW2 140883 22 21167511 NM_080764 NP_542942 G/T E256A plus 7998820 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.2 suppressor of hairy wing homolog 2 (Drosophila) 18232 rs2236729 SUHW2 140883 22 21167511 NM_080764 NP_542942 G/T E256A plus 24098840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.2 suppressor of hairy wing homolog 2 (Drosophila) 18233 rs2236729 SUHW2 140883 22 21167511 NM_080764 NP_542942 G/T E256A plus 24098840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.2 suppressor of hairy wing homolog 2 (Drosophila) 18234 rs2236729 SUHW2 140883 22 21167511 NM_080764 NP_542942 G/T E256A plus 24098840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 22q11.2 suppressor of hairy wing homolog 2 (Drosophila) 18235 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 3191637 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.31 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18236 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 8819735 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.38 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18237 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 8819735 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.39 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18238 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 8819735 776 SNP500CANCER AFR1 African / African-American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18239 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 8819735 777 SNP500CANCER HISP1 Hispanic (23) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18240 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 8819735 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18241 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 16340339 693 EGP_SNPS PDR90 NIHPDR 172 0.45 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18242 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 24325863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18243 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 24325863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18244 rs2237051 EGF 1950 4 111258802 NM_001963 NP_001954 A/G M708I plus 24325863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 18245 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 5586536 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18246 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 5586536 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18247 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 5586536 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18248 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 5586536 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18249 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 5586536 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18250 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 10521691 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18251 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 23459179 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18252 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 23459179 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18253 rs2237857 FANCG 2189 9 35066755 NM_004629 NP_004620 A/G T297I plus 23459179 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9p13 "Fanconi anemia, complementation group G" 18254 rs2238472 ABCC6 368 16 16159100 NM_001171 NP_001162 A/G R1268Q minus 24522768 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 18255 rs2238472 ABCC6 368 16 16159100 NM_001171 NP_001162 A/G R1268Q minus 24522768 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 18256 rs2238472 ABCC6 368 16 16159100 NM_001171 NP_001162 A/G R1268Q minus 24522768 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 18257 rs2238549 POLRMT 5442 19 573336 NM_005035 NP_005026 G/T E555A plus 3193531 738 YUSUKE JBIC-ALLELE Japanese (752) 1256 0.44 120 "by doubleHit,freq,cluster" 19p13.3 polymerase (RNA) mitochondrial (DNA directed) 18258 rs2239170 C1S 716 12 7044190 NM_001734 NP_001725 C/G V327L plus 3194304 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 98 HapMap 12p13 "complement component 1, s subcomponent" 18259 rs2239170 C1S 716 12 7044190 NM_201442 NP_958850 C/G V327L plus 3194304 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 98 HapMap 12p13 "complement component 1, s subcomponent" 18260 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 3194568 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.15 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18261 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 12675397 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.35 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18262 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 12675397 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.45 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18263 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 12675397 776 SNP500CANCER AFR1 African / African-American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18264 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 12675397 777 SNP500CANCER HISP1 Hispanic (23) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18265 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 12675397 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18266 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 16702260 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.36 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18267 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 24590236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18268 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 24590236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18269 rs2239359 FANCA 2175 16 88376981 NM_000135 NP_000126 C/T G501S plus 24590236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 18270 rs2239710 KRTHA4 3885 17 36789385 NM_021013 NP_066293 C/T I280T minus 3195027 738 YUSUKE JBIC-ALLELE Japanese (752) 1452 0.42 121 "HapMap,doubleHit,submitter,freq,cluster" 17q12-q21 "keratin, hair, acidic, 4" 18271 rs2239710 KRTHA4 3885 17 36789385 NM_021013 NP_066293 C/T I280T minus 6756951 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.44 121 "HapMap,doubleHit,submitter,freq,cluster" 17q12-q21 "keratin, hair, acidic, 4" 18272 rs2239729 ZNF215 7762 11 6933910 NM_013250 NP_037382 C/T M376V minus 3195055 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.04 123 "by cluster,freq" 11p15.4 zinc finger protein 215 18273 rs2239729 ZNF215 7762 11 6933910 NM_013250 NP_037382 C/T M376V minus 24062371 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p15.4 zinc finger protein 215 18274 rs2239729 ZNF215 7762 11 6933910 NM_013250 NP_037382 C/T M376V minus 24062371 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 11p15.4 zinc finger protein 215 18275 rs2239729 ZNF215 7762 11 6933910 NM_013250 NP_037382 C/T M376V minus 24062371 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 11p15.4 zinc finger protein 215 18276 rs2239730 ZNF215 7762 11 6933751 NM_013250 NP_037382 C/G V323L minus 3195056 738 YUSUKE JBIC-ALLELE Japanese (752) 918 0.15 123 "HapMap,submitter,freq,cluster" 11p15.4 zinc finger protein 215 18277 rs2239730 ZNF215 7762 11 6933751 NM_013250 NP_037382 C/G V323L minus 4045936 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 123 "HapMap,submitter,freq,cluster" 11p15.4 zinc finger protein 215 18278 rs2239730 ZNF215 7762 11 6933751 NM_013250 NP_037382 C/G V323L minus 23538306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 11p15.4 zinc finger protein 215 18279 rs2239730 ZNF215 7762 11 6933751 NM_013250 NP_037382 C/G V323L minus 23538306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,submitter,freq,cluster" 11p15.4 zinc finger protein 215 18280 rs2239730 ZNF215 7762 11 6933751 NM_013250 NP_037382 C/G V323L minus 23538306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 11p15.4 zinc finger protein 215 18281 rs2239734 ZNF214 7761 11 6978936 XM_495864 XP_495864 G/T I185R minus 3195063 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.19 123 "HapMap,freq,cluster" 11p15.4 zinc finger protein 214 18282 rs2239734 ZNF214 7761 11 6978936 XM_495864 XP_495864 G/T I185R minus 3195063 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 11p15.4 zinc finger protein 214 18283 rs2239734 ZNF214 7761 11 6978936 XM_495864 XP_495864 G/T I185R minus 24519444 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 11p15.4 zinc finger protein 214 18284 rs2239734 ZNF214 7761 11 6978936 XM_495864 XP_495864 G/T I185R minus 24519444 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 11p15.4 zinc finger protein 214 18285 rs2239734 ZNF214 7761 11 6978936 XM_495864 XP_495864 G/T I185R minus 24519444 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 11p15.4 zinc finger protein 214 18286 rs2239785 APOL1 8542 22 34985830 NM_003661 NP_003652 A/G E150K plus 3195160 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18287 rs2239785 APOL1 8542 22 34985830 NM_003661 NP_003652 A/G E150K plus 3380333 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18288 rs2239785 APOL1 8542 22 34985830 NM_003661 NP_003652 A/G E150K plus 23644638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18289 rs2239785 APOL1 8542 22 34985830 NM_003661 NP_003652 A/G E150K plus 23644638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18290 rs2239785 APOL1 8542 22 34985830 NM_003661 NP_003652 A/G E150K plus 23644638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18291 rs2239785 APOL1 8542 22 34985830 NM_145343 NP_663318 A/G E166K plus 3195160 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18292 rs2239785 APOL1 8542 22 34985830 NM_145343 NP_663318 A/G E166K plus 3380333 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18293 rs2239785 APOL1 8542 22 34985830 NM_145343 NP_663318 A/G E166K plus 23644638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18294 rs2239785 APOL1 8542 22 34985830 NM_145343 NP_663318 A/G E166K plus 23644638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18295 rs2239785 APOL1 8542 22 34985830 NM_145343 NP_663318 A/G E166K plus 23644638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18296 rs2239785 APOL1 8542 22 34985830 NM_145344 NP_663319 A/G E150K plus 3195160 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18297 rs2239785 APOL1 8542 22 34985830 NM_145344 NP_663319 A/G E150K plus 3380333 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18298 rs2239785 APOL1 8542 22 34985830 NM_145344 NP_663319 A/G E150K plus 23644638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18299 rs2239785 APOL1 8542 22 34985830 NM_145344 NP_663319 A/G E150K plus 23644638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18300 rs2239785 APOL1 8542 22 34985830 NM_145344 NP_663319 A/G E150K plus 23644638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 "apolipoprotein L, 1" 18301 rs2239819 TNR 7143 1 172107126 NM_003285 NP_003276 G/T A128S minus 3195209 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.44 123 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 18302 rs2239819 TNR 7143 1 172107126 NM_003285 NP_003276 G/T A128S minus 24153886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 18303 rs2239819 TNR 7143 1 172107126 NM_003285 NP_003276 G/T A128S minus 24153886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 18304 rs2239819 TNR 7143 1 172107126 NM_003285 NP_003276 G/T A128S minus 24153886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q24 "tenascin R (restrictin, janusin)" 18305 rs2239896 TMEM24 9854 11 118488644 NM_014807 NP_055622 A/G R413W minus 3195317 738 YUSUKE JBIC-ALLELE Japanese (752) 1426 0.13 98 "HapMap,freq" 11q23.3 transmembrane protein 24 18306 rs2239896 TMEM24 9854 11 118488644 NM_014807 NP_055622 A/G R413W minus 3195317 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 98 "HapMap,freq" 11q23.3 transmembrane protein 24 18307 rs2240017 TBX21 30009 17 43165918 NM_013351 NP_037483 C/G H33Q minus 3195495 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.13 98 by freq 17q21.32 T-box 21 18308 rs2240026 PPP1R9A 55607 7 94548071 XM_371933 XP_371933 A/G S1057N plus 3195508 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.49 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 18309 rs2240026 PPP1R9A 55607 7 94548071 XM_371933 XP_371933 A/G S1057N plus 24194081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 18310 rs2240026 PPP1R9A 55607 7 94548071 XM_371933 XP_371933 A/G S1057N plus 24194081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 18311 rs2240026 PPP1R9A 55607 7 94548071 XM_371933 XP_371933 A/G S1057N plus 24194081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21.3 "protein phosphatase 1, regulatory (inhibitor) subunit 9A" 18312 rs2240089 COBL 23242 7 50870245 NM_015198 NP_056013 C/G H919Q plus 3195600 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.3 123 "HapMap,freq" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18313 rs2240089 COBL 23242 7 50870245 NM_015198 NP_056013 C/G H919Q plus 3195600 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.15 123 "HapMap,freq" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18314 rs2240089 COBL 23242 7 50870245 NM_015198 NP_056013 C/G H919Q plus 24197168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18315 rs2240089 COBL 23242 7 50870245 NM_015198 NP_056013 C/G H919Q plus 24197168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18316 rs2240089 COBL 23242 7 50870245 NM_015198 NP_056013 C/G H919Q plus 24197168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18317 rs2240090 COBL 23242 7 50871183 NM_015198 NP_056013 C/T V607I plus 3195601 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.43 123 "HapMap,submitter,freq,cluster" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18318 rs2240090 COBL 23242 7 50871183 NM_015198 NP_056013 C/T V607I plus 14589831 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.34 123 "HapMap,submitter,freq,cluster" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18319 rs2240090 COBL 23242 7 50871183 NM_015198 NP_056013 C/T V607I plus 23765247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,submitter,freq,cluster" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18320 rs2240090 COBL 23242 7 50871183 NM_015198 NP_056013 C/T V607I plus 23765247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,submitter,freq,cluster" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18321 rs2240090 COBL 23242 7 50871183 NM_015198 NP_056013 C/T V607I plus 23765247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 7p12.2-p12.1 cordon-bleu homolog (mouse) 18322 rs2240140 SRRM2 23524 16 2752940 NM_016333 NP_057417 G/T P804T minus 3195670 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.26 103 "by cluster,freq" 16p13.3 serine/arginine repetitive matrix 2 18323 rs2240154 GRIN3B 116444 19 954172 XM_290850 XP_290850 C/T T157M plus 3195690 738 YUSUKE JBIC-ALLELE Japanese (752) 1452 0.43 98 "HapMap,freq" 19p13.3 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3B" 18324 rs2240154 GRIN3B 116444 19 954172 XM_290850 XP_290850 C/T T157M plus 3195690 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 98 "HapMap,freq" 19p13.3 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3B" 18325 rs2240157 GRIN3B 116444 19 955740 XM_290850 XP_290850 C/T W414R plus 3195693 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.44 121 "by cluster,freq" 19p13.3 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3B" 18326 rs2240228 OR10H3 26532 19 15713872 NM_013938 NP_039226 A/G V224M plus 3195795 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.22 123 "HapMap,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18327 rs2240228 OR10H3 26532 19 15713872 NM_013938 NP_039226 A/G V224M plus 3195795 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18328 rs2240228 OR10H3 26532 19 15713872 NM_013938 NP_039226 A/G V224M plus 24690203 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18329 rs2240228 OR10H3 26532 19 15713872 NM_013938 NP_039226 A/G V224M plus 24690203 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18330 rs2240228 OR10H3 26532 19 15713872 NM_013938 NP_039226 A/G V224M plus 24690203 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18331 rs2240229 OR10H3 26532 19 15714080 NM_013938 NP_039226 A/G S293N plus 3195796 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.11 123 "HapMap,submitter,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18332 rs2240229 OR10H3 26532 19 15714080 NM_013938 NP_039226 A/G S293N plus 3195796 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,submitter,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18333 rs2240229 OR10H3 26532 19 15714080 NM_013938 NP_039226 A/G S293N plus 24690205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,submitter,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18334 rs2240229 OR10H3 26532 19 15714080 NM_013938 NP_039226 A/G S293N plus 24690205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18335 rs2240229 OR10H3 26532 19 15714080 NM_013938 NP_039226 A/G S293N plus 24690205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 18336 rs2240308 AXIN2 8313 17 60985053 NM_004655 NP_004646 A/G P50S plus 17582346 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 121 "HapMap,doubleHit,freq,cluster" 17q23-q24 "axin 2 (conductin, axil)" 18337 rs2240345 SEC14L3 266629 22 29181927 NM_174975 NP_777635 A/C D335E plus 3195951 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "HapMap,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 18338 rs2240345 SEC14L3 266629 22 29181927 NM_174975 NP_777635 A/C D335E plus 8002153 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 18339 rs2240345 SEC14L3 266629 22 29181927 NM_174975 NP_777635 A/C D335E plus 24587563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 18340 rs2240345 SEC14L3 266629 22 29181927 NM_174975 NP_777635 A/C D335E plus 24587563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 18341 rs2240345 SEC14L3 266629 22 29181927 NM_174975 NP_777635 A/C D335E plus 24587563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 18342 rs2240359 OR2F2 135948 7 143070266 XM_069623 XP_069623 C/T A98V plus 3195972 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.47 121 "by doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily F, member 2" 18343 rs2240423 SF3A1 10291 22 29060890 NM_005877 NP_005868 A/C D408E plus 3196059 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 22q12.2 "splicing factor 3a, subunit 1, 120kDa" 18344 rs2240424 ZNF278 23598 22 30047440 NM_014323 NP_055138 G/T E685D plus 3196060 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.45 98 HapMap 22q12.2 zinc finger protein 278 18345 rs2240424 ZNF278 23598 22 30047440 NM_014323 NP_055138 G/T E685D plus 3196060 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 22q12.2 zinc finger protein 278 18346 rs2240424 ZNF278 23598 22 30047440 NM_032050 NP_114439 G/T E639D plus 3196060 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.45 98 HapMap 22q12.2 zinc finger protein 278 18347 rs2240424 ZNF278 23598 22 30047440 NM_032050 NP_114439 G/T E639D plus 3196060 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 22q12.2 zinc finger protein 278 18348 rs2240426 ZNF278 23598 22 30047507 NM_014323 NP_055138 A/C I663S plus 3196062 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 22q12.2 zinc finger protein 278 18349 rs2240426 ZNF278 23598 22 30047507 NM_032050 NP_114439 A/C I617S plus 3196062 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 22q12.2 zinc finger protein 278 18350 rs2240445 LAMB4 22798 7 107300846 NM_007356 NP_031382 C/T N866S plus 3196097 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.15 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 18351 rs2240445 LAMB4 22798 7 107300846 NM_007356 NP_031382 C/T N866S plus 23993397 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 18352 rs2240445 LAMB4 22798 7 107300846 NM_007356 NP_031382 C/T N866S plus 23993397 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 18353 rs2240445 LAMB4 22798 7 107300846 NM_007356 NP_031382 C/T N866S plus 23993397 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 18354 rs2240694 PCDHA3 56145 5 140163242 NM_018906 NP_061729 C/T C759Y minus 3196415 738 YUSUKE JBIC-ALLELE Japanese (752) 1316 0.46 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 18355 rs2240694 PCDHA3 56145 5 140163242 NM_031497 NP_113685 C/T C759Y minus 3196415 738 YUSUKE JBIC-ALLELE Japanese (752) 1316 0.46 121 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 18356 rs2240696 PCDHA1 56147 5 140148254 NM_018900 NP_061723 C/T Y732C minus 3196417 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.47 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18357 rs2240696 PCDHA1 56147 5 140148254 NM_018900 NP_061723 C/T Y732C minus 24621811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18358 rs2240696 PCDHA1 56147 5 140148254 NM_018900 NP_061723 C/T Y732C minus 24621811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18359 rs2240696 PCDHA1 56147 5 140148254 NM_018900 NP_061723 C/T Y732C minus 24621811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18360 rs2240696 PCDHA1 56147 5 140148254 NM_031410 NP_113598 C/T Y732C minus 3196417 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.47 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18361 rs2240696 PCDHA1 56147 5 140148254 NM_031410 NP_113598 C/T Y732C minus 24621811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18362 rs2240696 PCDHA1 56147 5 140148254 NM_031410 NP_113598 C/T Y732C minus 24621811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18363 rs2240696 PCDHA1 56147 5 140148254 NM_031410 NP_113598 C/T Y732C minus 24621811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by submitter,freq,cluster" 5q31 protocadherin alpha 1 18364 rs2240697 PCDHGB3 56102 5 140731312 NM_018924 NP_061747 C/G N389K plus 3196421 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.36 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 3" 18365 rs2240697 PCDHGB3 56102 5 140731312 NM_018924 NP_061747 C/G N389K plus 11744529 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 3" 18366 rs2240697 PCDHGB3 56102 5 140731312 NM_032097 NP_115268 C/G N389K plus 3196421 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.36 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 3" 18367 rs2240697 PCDHGB3 56102 5 140731312 NM_032097 NP_115268 C/G N389K plus 11744529 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 3" 18368 rs2240717 ARVCF 421 22 18343660 NM_001670 NP_001661 C/T V175A minus 3196448 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.23 121 "by doubleHit,freq,cluster" 22q11.21 armadillo repeat gene deletes in velocardiofacial syndrome 18369 rs2240804 DPCR1 135656 6 31028869 NM_080870 NP_543146 C/T R235Q minus 3196560 738 YUSUKE JBIC-ALLELE Japanese (752) 1064 0.18 123 "by doubleHit,freq,cluster" 6p21.32 diffuse panbronchiolitis critical region 1 18370 rs2240804 DPCR1 135656 6 31028869 NM_080870 NP_543146 C/T R235Q minus 24351956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 6p21.32 diffuse panbronchiolitis critical region 1 18371 rs2240804 DPCR1 135656 6 31028869 NM_080870 NP_543146 C/T R235Q minus 24351956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 6p21.32 diffuse panbronchiolitis critical region 1 18372 rs2240804 DPCR1 135656 6 31028869 NM_080870 NP_543146 C/T R235Q minus 24351956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 6p21.32 diffuse panbronchiolitis critical region 1 18373 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.28 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18374 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.23 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18375 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 901 AFFY AfAm 12 1 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18376 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 902 AFFY Caucasian 22 0.27 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18377 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 903 AFFY Asian 12 0.33 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18378 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 904 AFFY CEPH 8 0.13 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18379 rs2240871 CNAP1 9918 12 6510242 NM_014865 NP_055680 C/G T1321S plus 3196644 905 AFFY PDpanel 42 0.21 120 "HapMap,doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 18380 rs2240891 VENTX2 27287 10 134940534 NM_014468 NP_055283 C/T M79V minus 3196672 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.12 98 by freq 10q26.3 VENT-like homeobox 2 18381 rs2240892 VENTX2 27287 10 134940424 NM_014468 NP_055283 A/G L42P minus 3196673 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.38 120 "by doubleHit,freq,cluster" 10q26.3 VENT-like homeobox 2 18382 rs2240953 SLC27A4 10999 9 128190446 NM_005094 NP_005085 C/T G209S minus 3196750 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.24 98 by freq 9q34.13 "solute carrier family 27 (fatty acid transporter), member 4" 18383 rs2241002 CD5 921 11 60643489 NM_014207 NP_055022 C/T P224L plus 3196809 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.04 116 "HapMap,freq,cluster" 11q13 CD5 antigen (p56-62) 18384 rs2241002 CD5 921 11 60643489 NM_014207 NP_055022 C/T P224L plus 12159051 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 116 "HapMap,freq,cluster" 11q13 CD5 antigen (p56-62) 18385 rs2241012 MLLT6 4302 17 34121665 NM_005937 NP_005928 A/G A198T plus 3196822 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.04 98 HapMap 17q21 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6" 18386 rs2241012 MLLT6 4302 17 34121665 NM_005937 NP_005928 A/G A198T plus 3196822 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 17q21 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6" 18387 rs2241057 CYP26B1 56603 2 72273615 NM_019885 NP_063938 C/T L264S minus 9997893 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 116 "HapMap,freq,cluster" 2p13.2 "cytochrome P450, family 26, subfamily B, polypeptide 1" 18388 rs2241091 OR1A2 26189 17 3048328 NM_012352 NP_036484 A/C G256C minus 3196924 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.47 123 "by doubleHit,freq,cluster" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 18389 rs2241091 OR1A2 26189 17 3048328 NM_012352 NP_036484 A/C G256C minus 24212854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 18390 rs2241091 OR1A2 26189 17 3048328 NM_012352 NP_036484 A/C G256C minus 24212854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 18391 rs2241091 OR1A2 26189 17 3048328 NM_012352 NP_036484 A/C G256C minus 24212854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 18392 rs2241230 SCARF2 91179 22 19108604 NM_153334 NP_699165 A/T T425S minus 3197117 738 YUSUKE JBIC-ALLELE Japanese (752) 1272 0.47 98 by freq 22q11.21 "scavenger receptor class F, member 2" 18393 rs2241230 SCARF2 91179 22 19108604 NM_182895 NP_878315 A/T T425S minus 3197117 738 YUSUKE JBIC-ALLELE Japanese (752) 1272 0.47 98 by freq 22q11.21 "scavenger receptor class F, member 2" 18394 rs2241268 AKAP13 11214 15 84079313 NM_006738 NP_006729 A/G G2461S plus 3197161 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18395 rs2241268 AKAP13 11214 15 84079313 NM_006738 NP_006729 A/G G2461S plus 24372876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18396 rs2241268 AKAP13 11214 15 84079313 NM_006738 NP_006729 A/G G2461S plus 24372876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18397 rs2241268 AKAP13 11214 15 84079313 NM_006738 NP_006729 A/G G2461S plus 24372876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18398 rs2241268 AKAP13 11214 15 84079313 NM_007200 NP_009131 A/G G2457S plus 3197161 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18399 rs2241268 AKAP13 11214 15 84079313 NM_007200 NP_009131 A/G G2457S plus 24372876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18400 rs2241268 AKAP13 11214 15 84079313 NM_007200 NP_009131 A/G G2457S plus 24372876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18401 rs2241268 AKAP13 11214 15 84079313 NM_007200 NP_009131 A/G G2457S plus 24372876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18402 rs2241268 AKAP13 11214 15 84079313 NM_144767 NP_658913 A/G G702S plus 3197161 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18403 rs2241268 AKAP13 11214 15 84079313 NM_144767 NP_658913 A/G G702S plus 24372876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18404 rs2241268 AKAP13 11214 15 84079313 NM_144767 NP_658913 A/G G702S plus 24372876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18405 rs2241268 AKAP13 11214 15 84079313 NM_144767 NP_658913 A/G G702S plus 24372876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 18406 rs2241371 TRIM41 90933 5 180593801 NM_033549 NP_291027 C/T D438G minus 3197301 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0 98 by freq 5q35.3 tripartite motif-containing 41 18407 rs2241371 TRIM41 90933 5 180593801 NM_201627 NP_963921 C/T D438G minus 3197301 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0 98 by freq 5q35.3 tripartite motif-containing 41 18408 rs2241384 ILT7 23547 19 59541754 NM_012276 NP_036408 C/T P27L minus 3197318 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.16 123 "HapMap,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 18409 rs2241384 ILT7 23547 19 59541754 NM_012276 NP_036408 C/T P27L minus 3197318 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 18410 rs2241384 ILT7 23547 19 59541754 NM_012276 NP_036408 C/T P27L minus 23778078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 18411 rs2241384 ILT7 23547 19 59541754 NM_012276 NP_036408 C/T P27L minus 23778078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 18412 rs2241384 ILT7 23547 19 59541754 NM_012276 NP_036408 C/T P27L minus 23778078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 18413 rs2241559 AMOTL2 51421 3 135567393 NM_016201 NP_057285 C/T G415S plus 3197534 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.06 98 by freq 3q21-q22 angiomotin like 2 18414 rs2241571 PRDM10 56980 11 129300160 NM_020228 NP_064613 A/G T573A minus 3197553 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18415 rs2241571 PRDM10 56980 11 129300160 NM_020228 NP_064613 A/G T573A minus 15501313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18416 rs2241571 PRDM10 56980 11 129300160 NM_020228 NP_064613 A/G T573A minus 23787432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18417 rs2241571 PRDM10 56980 11 129300160 NM_020228 NP_064613 A/G T573A minus 23787432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18418 rs2241571 PRDM10 56980 11 129300160 NM_020228 NP_064613 A/G T573A minus 23787432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18419 rs2241571 PRDM10 56980 11 129300160 NM_199437 NP_955469 A/G T569A minus 3197553 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18420 rs2241571 PRDM10 56980 11 129300160 NM_199437 NP_955469 A/G T569A minus 15501313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18421 rs2241571 PRDM10 56980 11 129300160 NM_199437 NP_955469 A/G T569A minus 23787432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18422 rs2241571 PRDM10 56980 11 129300160 NM_199437 NP_955469 A/G T569A minus 23787432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18423 rs2241571 PRDM10 56980 11 129300160 NM_199437 NP_955469 A/G T569A minus 23787432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18424 rs2241571 PRDM10 56980 11 129300160 NM_199438 NP_955470 A/G T487A minus 3197553 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18425 rs2241571 PRDM10 56980 11 129300160 NM_199438 NP_955470 A/G T487A minus 15501313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18426 rs2241571 PRDM10 56980 11 129300160 NM_199438 NP_955470 A/G T487A minus 23787432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18427 rs2241571 PRDM10 56980 11 129300160 NM_199438 NP_955470 A/G T487A minus 23787432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18428 rs2241571 PRDM10 56980 11 129300160 NM_199438 NP_955470 A/G T487A minus 23787432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18429 rs2241571 PRDM10 56980 11 129300160 NM_199439 NP_955471 A/G T483A minus 3197553 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18430 rs2241571 PRDM10 56980 11 129300160 NM_199439 NP_955471 A/G T483A minus 15501313 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18431 rs2241571 PRDM10 56980 11 129300160 NM_199439 NP_955471 A/G T483A minus 23787432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18432 rs2241571 PRDM10 56980 11 129300160 NM_199439 NP_955471 A/G T483A minus 23787432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18433 rs2241571 PRDM10 56980 11 129300160 NM_199439 NP_955471 A/G T483A minus 23787432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 11q25 PR domain containing 10 18434 rs2241586 ZNF610 162963 19 57560834 NM_173530 NP_775801 A/C A131S minus 3197575 738 YUSUKE JBIC-ALLELE Japanese (752) 1306 0.36 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 18435 rs2241586 ZNF610 162963 19 57560834 NM_173530 NP_775801 A/C A131S minus 24204177 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 18436 rs2241586 ZNF610 162963 19 57560834 NM_173530 NP_775801 A/C A131S minus 24204177 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 18437 rs2241586 ZNF610 162963 19 57560834 NM_173530 NP_775801 A/C A131S minus 24204177 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.48 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 610 18438 rs2241621 STN2 85439 14 80806829 NM_033104 NP_149095 A/C S851A plus 3197624 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.46 123 "HapMap,submitter,freq,cluster" 14q31.1 stonin 2 18439 rs2241621 STN2 85439 14 80806829 NM_033104 NP_149095 A/C S851A plus 3197624 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,submitter,freq,cluster" 14q31.1 stonin 2 18440 rs2241621 STN2 85439 14 80806829 NM_033104 NP_149095 A/C S851A plus 24105268 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,submitter,freq,cluster" 14q31.1 stonin 2 18441 rs2241621 STN2 85439 14 80806829 NM_033104 NP_149095 A/C S851A plus 24105268 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 14q31.1 stonin 2 18442 rs2241621 STN2 85439 14 80806829 NM_033104 NP_149095 A/C S851A plus 24105268 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 14q31.1 stonin 2 18443 rs2241647 AVEN 57099 15 31947278 NM_020371 NP_065104 A/G Q228R minus 3197658 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.3 98 by freq 15q13.1 "apoptosis, caspase activation inhibitor" 18444 rs2241666 ZWINT 11130 10 57788636 NM_007057 NP_008988 C/T R187G plus 3197681 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.12 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18445 rs2241666 ZWINT 11130 10 57788636 NM_007057 NP_008988 C/T R187G plus 3355272 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18446 rs2241666 ZWINT 11130 10 57788636 NM_007057 NP_008988 C/T R187G plus 24573924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18447 rs2241666 ZWINT 11130 10 57788636 NM_007057 NP_008988 C/T R187G plus 24573924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18448 rs2241666 ZWINT 11130 10 57788636 NM_007057 NP_008988 C/T R187G plus 24573924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18449 rs2241666 ZWINT 11130 10 57788636 NM_032997 NP_127490 C/T R187G plus 3197681 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.12 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18450 rs2241666 ZWINT 11130 10 57788636 NM_032997 NP_127490 C/T R187G plus 3355272 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18451 rs2241666 ZWINT 11130 10 57788636 NM_032997 NP_127490 C/T R187G plus 24573924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18452 rs2241666 ZWINT 11130 10 57788636 NM_032997 NP_127490 C/T R187G plus 24573924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18453 rs2241666 ZWINT 11130 10 57788636 NM_032997 NP_127490 C/T R187G plus 24573924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 10q21-q22 ZW10 interactor 18454 rs2241671 COL27A1 85301 9 114010653 NM_032888 NP_116277 C/T A422T minus 3197688 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.48 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 18455 rs2241671 COL27A1 85301 9 114010653 NM_032888 NP_116277 C/T A422T minus 24510000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 18456 rs2241671 COL27A1 85301 9 114010653 NM_032888 NP_116277 C/T A422T minus 24510000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 18457 rs2241671 COL27A1 85301 9 114010653 NM_032888 NP_116277 C/T A422T minus 24510000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 18458 rs2241764 GPR39 2863 2 133008496 NM_001508 NP_001499 A/G A50V minus 3197803 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.27 123 "by doubleHit,submitter,freq,cluster" 2q21-q22 G protein-coupled receptor 39 18459 rs2241764 GPR39 2863 2 133008496 NM_001508 NP_001499 A/G A50V minus 23695153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 2q21-q22 G protein-coupled receptor 39 18460 rs2241764 GPR39 2863 2 133008496 NM_001508 NP_001499 A/G A50V minus 23695153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 2q21-q22 G protein-coupled receptor 39 18461 rs2241764 GPR39 2863 2 133008496 NM_001508 NP_001499 A/G A50V minus 23695153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 2q21-q22 G protein-coupled receptor 39 18462 rs2241788 A1BG 1 19 63553556 NM_130786 NP_570602 A/G H395R minus 3197834 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 98 by freq 19q13.4 alpha-1-B glycoprotein 18463 rs2241797 TGFBRAP1 9392 2 105344479 NM_004257 NP_004248 C/T H725R plus 3197847 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.22 123 "by doubleHit,submitter,freq,cluster" 2q12.2 "transforming growth factor, beta receptor associated protein 1" 18464 rs2241797 TGFBRAP1 9392 2 105344479 NM_004257 NP_004248 C/T H725R plus 23212515 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 2q12.2 "transforming growth factor, beta receptor associated protein 1" 18465 rs2241797 TGFBRAP1 9392 2 105344479 NM_004257 NP_004248 C/T H725R plus 23212515 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 2q12.2 "transforming growth factor, beta receptor associated protein 1" 18466 rs2241797 TGFBRAP1 9392 2 105344479 NM_004257 NP_004248 C/T H725R plus 23212515 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 2q12.2 "transforming growth factor, beta receptor associated protein 1" 18467 rs2241880 APG16L 55054 2 233965368 NM_017974 NP_060444 C/T T197A minus 3197957 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.23 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18468 rs2241880 APG16L 55054 2 233965368 NM_017974 NP_060444 C/T T197A minus 24276839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18469 rs2241880 APG16L 55054 2 233965368 NM_017974 NP_060444 C/T T197A minus 24276839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18470 rs2241880 APG16L 55054 2 233965368 NM_017974 NP_060444 C/T T197A minus 24276839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18471 rs2241880 APG16L 55054 2 233965368 NM_030803 NP_110430 C/T T216A minus 3197957 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.23 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18472 rs2241880 APG16L 55054 2 233965368 NM_030803 NP_110430 C/T T216A minus 24276839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18473 rs2241880 APG16L 55054 2 233965368 NM_030803 NP_110430 C/T T216A minus 24276839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18474 rs2241880 APG16L 55054 2 233965368 NM_030803 NP_110430 C/T T216A minus 24276839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 2q37.1 APG16 autophagy 16-like (S. cerevisiae) 18475 rs2241883 FABP1 2168 2 88263328 NM_001443 NP_001434 C/T T94A plus 3197965 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.24 123 "by cluster,freq" 2p11 "fatty acid binding protein 1, liver" 18476 rs2241883 FABP1 2168 2 88263328 NM_001443 NP_001434 C/T T94A plus 24160905 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 2p11 "fatty acid binding protein 1, liver" 18477 rs2241883 FABP1 2168 2 88263328 NM_001443 NP_001434 C/T T94A plus 24160905 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 2p11 "fatty acid binding protein 1, liver" 18478 rs2241883 FABP1 2168 2 88263328 NM_001443 NP_001434 C/T T94A plus 24160905 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 2p11 "fatty acid binding protein 1, liver" 18479 rs2241980 CRYGB 1419 2 208833127 NM_005210 NP_005201 C/G R90T plus 3198103 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 2q33-q35 "crystallin, gamma B" 18480 rs2242030 FAM40B 57464 7 128692116 XM_045907 XP_045907 C/T R383Q minus 3198179 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.29 123 "by cluster,freq" 7q32.3 "family with sequence similarity 40, member B" 18481 rs2242030 FAM40B 57464 7 128692116 XM_045907 XP_045907 C/T R383Q minus 24022125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 7q32.3 "family with sequence similarity 40, member B" 18482 rs2242030 FAM40B 57464 7 128692116 XM_045907 XP_045907 C/T R383Q minus 24022125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 7q32.3 "family with sequence similarity 40, member B" 18483 rs2242030 FAM40B 57464 7 128692116 XM_045907 XP_045907 C/T R383Q minus 24022125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 7q32.3 "family with sequence similarity 40, member B" 18484 rs2242046 SLC28A1 9154 15 83279733 NM_004213 NP_004204 C/T D521N minus 3198200 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.06 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18485 rs2242046 SLC28A1 9154 15 83279733 NM_004213 NP_004204 C/T D521N minus 12580318 895 PHARMGKB_PMT PA128336060 466 0.26 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18486 rs2242046 SLC28A1 9154 15 83279733 NM_004213 NP_004204 C/T D521N minus 24367127 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18487 rs2242046 SLC28A1 9154 15 83279733 NM_004213 NP_004204 C/T D521N minus 24367127 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18488 rs2242046 SLC28A1 9154 15 83279733 NM_004213 NP_004204 C/T D521N minus 24367127 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18489 rs2242047 SLC28A1 9154 15 83279700 NM_004213 NP_004204 A/G R510C minus 3198201 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.35 123 "by submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18490 rs2242047 SLC28A1 9154 15 83279700 NM_004213 NP_004204 A/G R510C minus 12580317 895 PHARMGKB_PMT PA128336060 490 0.07 123 "by submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18491 rs2242047 SLC28A1 9154 15 83279700 NM_004213 NP_004204 A/G R510C minus 23940617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18492 rs2242047 SLC28A1 9154 15 83279700 NM_004213 NP_004204 A/G R510C minus 23940617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18493 rs2242047 SLC28A1 9154 15 83279700 NM_004213 NP_004204 A/G R510C minus 23940617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 18494 rs2242089 PYCRL 65263 8 144760289 NM_023078 NP_075566 A/G V105M minus 3198258 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.33 98 "HapMap,freq" 8q24.3 pyrroline-5-carboxylate reductase-like 18495 rs2242089 PYCRL 65263 8 144760289 NM_023078 NP_075566 A/G V105M minus 3198258 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 98 "HapMap,freq" 8q24.3 pyrroline-5-carboxylate reductase-like 18496 rs2242090 PYCRL 65263 8 144759879 NM_023078 NP_075566 C/G K150N minus 3198259 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.36 121 "by doubleHit,freq,cluster" 8q24.3 pyrroline-5-carboxylate reductase-like 18497 rs2242093 ZC3HDC3 23144 8 144694717 NM_015117 NP_055932 A/G I6M minus 3198263 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 98 "HapMap,freq" 8q24.3 zinc finger CCCH type domain containing 3 18498 rs2242206 SLC16A9 220963 10 61084017 NM_194298 NP_919274 G/T T258K plus 3198420 738 YUSUKE JBIC-ALLELE Japanese (752) 1286 0.43 123 "HapMap,doubleHit,freq,cluster" 10q21.3 "solute carrier family 16 (monocarboxylic acid transporters), member 9" 18499 rs2242206 SLC16A9 220963 10 61084017 NM_194298 NP_919274 G/T T258K plus 16056446 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 10q21.3 "solute carrier family 16 (monocarboxylic acid transporters), member 9" 18500 rs2242206 SLC16A9 220963 10 61084017 NM_194298 NP_919274 G/T T258K plus 24052427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 10q21.3 "solute carrier family 16 (monocarboxylic acid transporters), member 9" 18501 rs2242206 SLC16A9 220963 10 61084017 NM_194298 NP_919274 G/T T258K plus 24052427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 10q21.3 "solute carrier family 16 (monocarboxylic acid transporters), member 9" 18502 rs2242206 SLC16A9 220963 10 61084017 NM_194298 NP_919274 G/T T258K plus 24052427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 10q21.3 "solute carrier family 16 (monocarboxylic acid transporters), member 9" 18503 rs2242241 DOK2 9046 8 21822827 NM_003974 NP_003965 G/T S394A minus 3198466 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 98 by freq 8p21.3 "docking protein 2, 56kDa" 18504 rs2242241 DOK2 9046 8 21822827 NM_201349 NP_958728 G/T S240A minus 3198466 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 98 by freq 8p21.3 "docking protein 2, 56kDa" 18505 rs2242471 SDAD1 55153 4 77235895 NM_018115 NP_060585 C/G S515C plus 24322495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 4q21.21 SDA1 domain containing 1 18506 rs2242471 SDAD1 55153 4 77235895 NM_018115 NP_060585 C/G S515C plus 24322495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 4q21.21 SDA1 domain containing 1 18507 rs2242471 SDAD1 55153 4 77235895 NM_018115 NP_060585 C/G S515C plus 24322495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 4q21.21 SDA1 domain containing 1 18508 rs2242518 RAD23A 5886 19 12921191 NM_005053 NP_005044 A/G Q261R plus 3198860 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 98 HapMap 19p13.2 RAD23 homolog A (S. cerevisiae) 18509 rs2242609 PAPLN 89932 14 72782056 XM_370765 XP_370765 G/T L138V plus 3198992 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.48 98 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 18510 rs2242616 PAPLN 89932 14 72797679 XM_370765 XP_370765 C/G Q939H plus 3199001 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.12 98 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 18511 rs2242637 ARTN 9048 1 44070477 NM_003976 NP_003967 A/G Q19R plus 3199025 738 YUSUKE JBIC-ALLELE Japanese (752) 1056 0.24 121 "by doubleHit,freq,cluster" 1p33-p32 artemin 18512 rs2242637 ARTN 9048 1 44070477 NM_057090 NP_476431 A/G Q19R plus 3199025 738 YUSUKE JBIC-ALLELE Japanese (752) 1056 0.24 121 "by doubleHit,freq,cluster" 1p33-p32 artemin 18513 rs2242637 ARTN 9048 1 44070477 NM_057091 NP_476432 A/G Q19R plus 3199025 738 YUSUKE JBIC-ALLELE Japanese (752) 1056 0.24 121 "by doubleHit,freq,cluster" 1p33-p32 artemin 18514 rs2242653 LY6G6D 58530 6 31783744 NM_021246 NP_067069 C/T R167K minus 3199046 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1464 0.25 120 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G6D" 18515 rs2243062 F2RL1 2150 5 76164997 NM_005242 NP_005233 A/G R270Q plus 3199525 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "HapMap,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 18516 rs2243062 F2RL1 2150 5 76164997 NM_005242 NP_005233 A/G R270Q plus 3199525 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 18517 rs2243062 F2RL1 2150 5 76164997 NM_005242 NP_005233 A/G R270Q plus 23657516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 18518 rs2243062 F2RL1 2150 5 76164997 NM_005242 NP_005233 A/G R270Q plus 23657516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 18519 rs2243062 F2RL1 2150 5 76164997 NM_005242 NP_005233 A/G R270Q plus 23657516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 5q13 coagulation factor II (thrombin) receptor-like 1 18520 rs2243072 F2RL1 2150 5 76150825 NM_005242 NP_005233 C/T S21F plus 3199535 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 by freq 5q13 coagulation factor II (thrombin) receptor-like 1 18521 rs2243072 F2RL1 2150 5 76150825 NM_005242 NP_005233 C/T S21F plus 24676218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 5q13 coagulation factor II (thrombin) receptor-like 1 18522 rs2243072 F2RL1 2150 5 76150825 NM_005242 NP_005233 C/T S21F plus 24676218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q13 coagulation factor II (thrombin) receptor-like 1 18523 rs2243072 F2RL1 2150 5 76150825 NM_005242 NP_005233 C/T S21F plus 24676218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13 coagulation factor II (thrombin) receptor-like 1 18524 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 3199673 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18525 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 3199673 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.23 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18526 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 16333900 901 AFFY AfAm 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18527 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 16333900 902 AFFY Caucasian 20 0.15 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18528 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 16333900 903 AFFY Asian 12 0.33 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18529 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 16333900 904 AFFY CEPH 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18530 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 16333900 905 AFFY PDpanel 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18531 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 24161038 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18532 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 24161038 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18533 rs2243191 IL19 29949 1 203404352 NM_013371 NP_037503 C/T F175S plus 24161038 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18534 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 3199673 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18535 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 3199673 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.23 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18536 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 16333900 901 AFFY AfAm 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18537 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 16333900 902 AFFY Caucasian 20 0.15 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18538 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 16333900 903 AFFY Asian 12 0.33 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18539 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 16333900 904 AFFY CEPH 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18540 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 16333900 905 AFFY PDpanel 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18541 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 24161038 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18542 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 24161038 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18543 rs2243191 IL19 29949 1 203404352 NM_153758 NP_715639 C/T F213S plus 24161038 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 1q32.2 interleukin 19 18544 rs2243518 CDH17 1015 8 95258026 NM_004063 NP_004054 A/G K115E minus 3253443 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.36 121 "by doubleHit,freq,cluster" 8q22.1 "cadherin 17, LI cadherin (liver-intestine)" 18545 rs2243525 LGALS8 3964 1 233032903 NM_006499 NP_006490 C/G R226S plus 3209474 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18546 rs2243525 LGALS8 3964 1 233032903 NM_006499 NP_006490 C/G R226S plus 24292085 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18547 rs2243525 LGALS8 3964 1 233032903 NM_006499 NP_006490 C/G R226S plus 24292085 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18548 rs2243525 LGALS8 3964 1 233032903 NM_006499 NP_006490 C/G R226S plus 24292085 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18549 rs2243525 LGALS8 3964 1 233032903 NM_201543 NP_963837 C/G R184S plus 3209474 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18550 rs2243525 LGALS8 3964 1 233032903 NM_201543 NP_963837 C/G R184S plus 24292085 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18551 rs2243525 LGALS8 3964 1 233032903 NM_201543 NP_963837 C/G R184S plus 24292085 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18552 rs2243525 LGALS8 3964 1 233032903 NM_201543 NP_963837 C/G R184S plus 24292085 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18553 rs2243525 LGALS8 3964 1 233032903 NM_201544 NP_963838 C/G R184S plus 3209474 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18554 rs2243525 LGALS8 3964 1 233032903 NM_201544 NP_963838 C/G R184S plus 24292085 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18555 rs2243525 LGALS8 3964 1 233032903 NM_201544 NP_963838 C/G R184S plus 24292085 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18556 rs2243525 LGALS8 3964 1 233032903 NM_201544 NP_963838 C/G R184S plus 24292085 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18557 rs2243525 LGALS8 3964 1 233032903 NM_201545 NP_963839 C/G R226S plus 3209474 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18558 rs2243525 LGALS8 3964 1 233032903 NM_201545 NP_963839 C/G R226S plus 24292085 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18559 rs2243525 LGALS8 3964 1 233032903 NM_201545 NP_963839 C/G R226S plus 24292085 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18560 rs2243525 LGALS8 3964 1 233032903 NM_201545 NP_963839 C/G R226S plus 24292085 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 18561 rs2243603 SIRPB1 10326 20 1494911 NM_006065 NP_006056 C/G A363P plus 3208458 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.24 121 "by doubleHit,submitter,freq,cluster" 20p13 signal-regulatory protein beta 1 18562 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 8819860 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.25 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18563 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 8819860 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.45 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18564 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 8819860 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18565 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 8819860 777 SNP500CANCER HISP1 Hispanic (23) 46 0.3 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18566 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 8819860 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18567 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 24410034 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18568 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 24410034 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18569 rs2243639 SFTPD 6441 10 81691702 NM_003019 NP_003010 C/T T180A plus 24410034 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 18570 rs2244008 LAMA2 3908 6 129854746 NM_000426 NP_000417 A/G T2636A plus 3211235 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.15 123 "by cluster,freq" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 18571 rs2244008 LAMA2 3908 6 129854746 NM_000426 NP_000417 A/G T2636A plus 23966262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 18572 rs2244008 LAMA2 3908 6 129854746 NM_000426 NP_000417 A/G T2636A plus 23966262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 18573 rs2244008 LAMA2 3908 6 129854746 NM_000426 NP_000417 A/G T2636A plus 23966262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 18574 rs2245203 KRTHB4 3890 12 51063780 NM_033045 NP_149034 C/T I206V plus 23356304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 12q13 "keratin, hair, basic, 4" 18575 rs2245203 KRTHB4 3890 12 51063780 NM_033045 NP_149034 C/T I206V plus 23356304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 12q13 "keratin, hair, basic, 4" 18576 rs2245203 KRTHB4 3890 12 51063780 NM_033045 NP_149034 C/T I206V plus 23356304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 12q13 "keratin, hair, basic, 4" 18577 rs2245220 PRND 23627 20 4653718 NM_012409 NP_036541 C/T T174M plus 8396689 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 123 "HapMap,doubleHit,freq,cluster" 20pter-p12 prion protein 2 (dublet) 18578 rs2245220 PRND 23627 20 4653718 NM_012409 NP_036541 C/T T174M plus 24499332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 20pter-p12 prion protein 2 (dublet) 18579 rs2245220 PRND 23627 20 4653718 NM_012409 NP_036541 C/T T174M plus 24499332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 20pter-p12 prion protein 2 (dublet) 18580 rs2245220 PRND 23627 20 4653718 NM_012409 NP_036541 C/T T174M plus 24499332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 20pter-p12 prion protein 2 (dublet) 18581 rs2245231 ACTR5 79913 20 36829534 NM_024855 NP_079131 A/G I483V plus 4950738 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.35 123 "by doubleHit,submitter,freq,cluster" 20q12 ARP5 actin-related protein 5 homolog (yeast) 18582 rs2245231 ACTR5 79913 20 36829534 NM_024855 NP_079131 A/G I483V plus 24202929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 20q12 ARP5 actin-related protein 5 homolog (yeast) 18583 rs2245231 ACTR5 79913 20 36829534 NM_024855 NP_079131 A/G I483V plus 24202929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 20q12 ARP5 actin-related protein 5 homolog (yeast) 18584 rs2245231 ACTR5 79913 20 36829534 NM_024855 NP_079131 A/G I483V plus 24202929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 20q12 ARP5 actin-related protein 5 homolog (yeast) 18585 rs2245408 MYO7B 4648 2 128097947 XM_291001 XP_291001 A/G R117Q plus 3413262 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 "HapMap,doubleHit" 2q21.1 myosin VIIB 18586 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 3235518 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.14 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18587 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 16334128 901 AFFY AfAm 6 0.5 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18588 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 16334128 902 AFFY Caucasian 24 0.46 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18589 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 16334128 903 AFFY Asian 12 0.17 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18590 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 16334128 904 AFFY CEPH 12 0.33 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18591 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 16334128 905 AFFY PDpanel 48 0.42 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18592 rs2245803 MMP20 9313 11 102001208 NM_004771 NP_004762 A/C K18T minus 28446749 693 EGP_SNPS PDR90 NIHPDR 160 0.31 123 "by doubleHit,submitter,freq,cluster" 11q22.3 matrix metalloproteinase 20 (enamelysin) 18593 rs2245898 WFDC9 259240 20 43672155 NM_147198 NP_671731 G/T N27T plus 3208236 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.37 123 "by doubleHit,submitter,freq,cluster" 20q12-q13.1 WAP four-disulfide core domain 9 18594 rs2245898 WFDC9 259240 20 43672155 NM_147198 NP_671731 G/T N27T plus 24082156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 20q12-q13.1 WAP four-disulfide core domain 9 18595 rs2245898 WFDC9 259240 20 43672155 NM_147198 NP_671731 G/T N27T plus 24082156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 20q12-q13.1 WAP four-disulfide core domain 9 18596 rs2245898 WFDC9 259240 20 43672155 NM_147198 NP_671731 G/T N27T plus 24082156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 20q12-q13.1 WAP four-disulfide core domain 9 18597 rs2246901 MUC4 4585 3 196978593 NM_004532 NP_004523 A/C A585S plus 3236197 738 YUSUKE JBIC-ALLELE Japanese (752) 912 0.18 116 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18598 rs2246901 MUC4 4585 3 196978593 NM_138297 NP_612154 A/C A534S plus 3236197 738 YUSUKE JBIC-ALLELE Japanese (752) 912 0.18 116 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18599 rs2246945 A4GNT 51146 3 139326174 NM_016161 NP_057245 A/C A218D minus 3233391 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.41 119 "by doubleHit,freq,cluster" 3p14.3 "alpha-1,4-N-acetylglucosaminyltransferase" 18600 rs2247114 SLC9A3 6550 5 528104 NM_004174 NP_004165 A/G C799R plus 3250432 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.48 121 "HapMap,doubleHit,freq,cluster" 5p15.3 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3" 18601 rs2247114 SLC9A3 6550 5 528104 NM_004174 NP_004165 A/G C799R plus 3595804 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,doubleHit,freq,cluster" 5p15.3 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3" 18602 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 3212662 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.39 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18603 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 4020857 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.35 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18604 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 17705565 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18605 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 24605462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18606 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 24605462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18607 rs2248490 WDR4 10785 21 43166813 NM_018669 NP_061139 C/G K71N plus 24605462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18608 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 3212662 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.39 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18609 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 4020857 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.35 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18610 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 17705565 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18611 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 24605462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18612 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 24605462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18613 rs2248490 WDR4 10785 21 43166813 NM_033661 NP_387510 C/G K71N plus 24605462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 21q22.3 WD repeat domain 4 18614 rs2248821 RUTBC1 9905 17 2215061 XM_029438 XP_029438 A/G R374Q plus 3227476 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.18 121 "HapMap,doubleHit,freq,cluster" 17p13.3 RUN and TBC1 domain containing 1 18615 rs2248821 RUTBC1 9905 17 2215061 XM_029438 XP_029438 A/G R374Q plus 3430227 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 121 "HapMap,doubleHit,freq,cluster" 17p13.3 RUN and TBC1 domain containing 1 18616 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 3212689 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.25 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18617 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 4020280 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.11 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18618 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 14449669 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.18 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18619 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 24532927 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18620 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 24532927 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18621 rs2249060 PCNT2 5116 21 46597605 NM_006031 NP_006022 C/T T539I plus 24532927 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 18622 rs2249265 IGSF2 9398 1 117271768 NM_004258 NP_004249 C/T M415V minus 3209984 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.14 123 "by doubleHit,submitter,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 18623 rs2249265 IGSF2 9398 1 117271768 NM_004258 NP_004249 C/T M415V minus 23859662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 18624 rs2249265 IGSF2 9398 1 117271768 NM_004258 NP_004249 C/T M415V minus 23859662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 18625 rs2249265 IGSF2 9398 1 117271768 NM_004258 NP_004249 C/T M415V minus 23859662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 18626 rs2249317 PTPNS1L2 128646 20 1480595 NM_178460 NP_848555 C/T N55D plus 2389370 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq" 20p13 "protein tyrosine phosphatase, non-receptor type substrate 1-like 2" 18627 rs2249317 PTPNS1L2 128646 20 1480595 NM_178460 NP_848555 C/T N55D plus 24597111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq" 20p13 "protein tyrosine phosphatase, non-receptor type substrate 1-like 2" 18628 rs2249317 PTPNS1L2 128646 20 1480595 NM_178460 NP_848555 C/T N55D plus 24597111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,submitter,freq" 20p13 "protein tyrosine phosphatase, non-receptor type substrate 1-like 2" 18629 rs2249317 PTPNS1L2 128646 20 1480595 NM_178460 NP_848555 C/T N55D plus 24597111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq" 20p13 "protein tyrosine phosphatase, non-receptor type substrate 1-like 2" 18630 rs2249464 VARS2L 57176 6 30996140 XM_373419 XP_373419 A/G W449R minus 3225380 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1446 0.28 121 "by doubleHit,freq,cluster" 6p21 valyl-tRNA synthetase 2-like 18631 rs2249778 TCL6 27004 14 95206547 NM_020552 NP_065577 A/G T34A plus 23650619 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18632 rs2249778 TCL6 27004 14 95206547 NM_020552 NP_065577 A/G T34A plus 23650619 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18633 rs2249778 TCL6 27004 14 95206547 NM_020552 NP_065577 A/G T34A plus 23650619 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18634 rs2249778 TCL6 27004 14 95206547 NM_020553 NP_065578 A/G T48A plus 23650619 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18635 rs2249778 TCL6 27004 14 95206547 NM_020553 NP_065578 A/G T48A plus 23650619 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18636 rs2249778 TCL6 27004 14 95206547 NM_020553 NP_065578 A/G T48A plus 23650619 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18637 rs2249778 TCL6 27004 14 95206547 NM_020554 NP_065579 A/G T92A plus 23650619 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18638 rs2249778 TCL6 27004 14 95206547 NM_020554 NP_065579 A/G T92A plus 23650619 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18639 rs2249778 TCL6 27004 14 95206547 NM_020554 NP_065579 A/G T92A plus 23650619 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 14q32.1 T-cell leukemia/lymphoma 6 18640 rs2250242 AKNA 80709 9 114183527 NM_030767 NP_110394 A/G S1303P plus 3254649 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.39 121 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 18641 rs2250242 AKNA 80709 9 114183527 NM_030767 NP_110394 A/G S1303P plus 3945346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 121 "HapMap,doubleHit,freq,cluster" 9q32 AT-hook transcription factor 18642 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 3758656 685 TSC-SANGER SC_96_C 248 0.32 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18643 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 3758656 686 TSC-SANGER SC_12_A CORIELL African American (12) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18644 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 3758656 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 32 0.27 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18645 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 3758656 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 30 0.32 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18646 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 24542002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18647 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 24542002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18648 rs2250860 WFDC8 90199 20 43617789 NM_130896 NP_570966 C/T N137S plus 24542002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18649 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 3758656 685 TSC-SANGER SC_96_C 248 0.32 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18650 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 3758656 686 TSC-SANGER SC_12_A CORIELL African American (12) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18651 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 3758656 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 32 0.27 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18652 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 3758656 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 30 0.32 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18653 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 24542002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18654 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 24542002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18655 rs2250860 WFDC8 90199 20 43617789 NM_181510 NP_852611 C/T N137S plus 24542002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 18656 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 3210633 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.31 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18657 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 5112479 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.13 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18658 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 5112479 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18659 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 16338515 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 4 0.25 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18660 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 24084492 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18661 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 24084492 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18662 rs2250889 MMP9 4318 20 44075813 NM_004994 NP_004985 C/G R574P plus 24084492 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 18663 rs2250918 CPAMD8 27151 19 16897087 NM_015692 NP_056507 A/G V1156I minus 3261522 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 18664 rs2250918 CPAMD8 27151 19 16897087 NM_015692 NP_056507 A/G V1156I minus 23588542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 18665 rs2250918 CPAMD8 27151 19 16897087 NM_015692 NP_056507 A/G V1156I minus 23588542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 18666 rs2250918 CPAMD8 27151 19 16897087 NM_015692 NP_056507 A/G V1156I minus 23588542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 18667 rs2251177 DRD3 1814 3 115341040 NM_033658 NP_387507 C/T A204T plus 23345864 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q13.3 dopamine receptor D3 18668 rs2251177 DRD3 1814 3 115341040 NM_033658 NP_387507 C/T A204T plus 23345864 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 3q13.3 dopamine receptor D3 18669 rs2251177 DRD3 1814 3 115341040 NM_033658 NP_387507 C/T A204T plus 23345864 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.3 dopamine receptor D3 18670 rs2251660 RAD52B 201299 17 31276650 NM_145654 NP_663629 G/T C127W minus 3236951 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.19 123 "HapMap,submitter,freq,cluster" 17q11.2 RAD52 homolog B (S. cerevisiae) 18671 rs2251660 RAD52B 201299 17 31276650 NM_145654 NP_663629 G/T C127W minus 3820004 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 17q11.2 RAD52 homolog B (S. cerevisiae) 18672 rs2251660 RAD52B 201299 17 31276650 NM_145654 NP_663629 G/T C127W minus 23609536 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq,cluster" 17q11.2 RAD52 homolog B (S. cerevisiae) 18673 rs2251660 RAD52B 201299 17 31276650 NM_145654 NP_663629 G/T C127W minus 23609536 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,submitter,freq,cluster" 17q11.2 RAD52 homolog B (S. cerevisiae) 18674 rs2251660 RAD52B 201299 17 31276650 NM_145654 NP_663629 G/T C127W minus 23609536 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 17q11.2 RAD52 homolog B (S. cerevisiae) 18675 rs2252755 SYNE1 23345 6 152561302 NM_015293 NP_056108 C/G G2847A plus 3238864 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.33 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18676 rs2252755 SYNE1 23345 6 152561302 NM_015293 NP_056108 C/G G2847A plus 23408416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18677 rs2252755 SYNE1 23345 6 152561302 NM_015293 NP_056108 C/G G2847A plus 23408416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18678 rs2252755 SYNE1 23345 6 152561302 NM_015293 NP_056108 C/G G2847A plus 23408416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18679 rs2252755 SYNE1 23345 6 152561302 NM_033071 NP_149062 C/G G8252A plus 3238864 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.33 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18680 rs2252755 SYNE1 23345 6 152561302 NM_033071 NP_149062 C/G G8252A plus 23408416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18681 rs2252755 SYNE1 23345 6 152561302 NM_033071 NP_149062 C/G G8252A plus 23408416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18682 rs2252755 SYNE1 23345 6 152561302 NM_033071 NP_149062 C/G G8252A plus 23408416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18683 rs2252755 SYNE1 23345 6 152561302 NM_133650 NP_598411 C/G G485A plus 3238864 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.33 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18684 rs2252755 SYNE1 23345 6 152561302 NM_133650 NP_598411 C/G G485A plus 23408416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18685 rs2252755 SYNE1 23345 6 152561302 NM_133650 NP_598411 C/G G485A plus 23408416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18686 rs2252755 SYNE1 23345 6 152561302 NM_133650 NP_598411 C/G G485A plus 23408416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18687 rs2252755 SYNE1 23345 6 152561302 NM_182961 NP_892006 C/G G8323A plus 3238864 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.33 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18688 rs2252755 SYNE1 23345 6 152561302 NM_182961 NP_892006 C/G G8323A plus 23408416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18689 rs2252755 SYNE1 23345 6 152561302 NM_182961 NP_892006 C/G G8323A plus 23408416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18690 rs2252755 SYNE1 23345 6 152561302 NM_182961 NP_892006 C/G G8323A plus 23408416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 18691 rs2252784 PTPRB 5787 12 69289160 NM_002837 NP_002828 A/G R94K minus 3214192 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.29 116 "by doubleHit,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 18692 rs2252863 VARS2L 57176 6 31001407 XM_373419 XP_373419 C/T A965T minus 3203887 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 118 "by cluster,freq" 6p21 valyl-tRNA synthetase 2-like 18693 rs2253563 ZNF180 7733 19 49675407 NM_013256 NP_037388 C/G W89C plus 3207094 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 180 (HHZ168) 18694 rs2253563 ZNF180 7733 19 49675407 NM_013256 NP_037388 C/G W89C plus 3610505 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 180 (HHZ168) 18695 rs2253563 ZNF180 7733 19 49675407 NM_013256 NP_037388 C/G W89C plus 23765892 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 180 (HHZ168) 18696 rs2253563 ZNF180 7733 19 49675407 NM_013256 NP_037388 C/G W89C plus 23765892 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 180 (HHZ168) 18697 rs2253563 ZNF180 7733 19 49675407 NM_013256 NP_037388 C/G W89C plus 23765892 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 180 (HHZ168) 18698 rs2253849 KLRC1 3821 12 10494937 NM_002259 NP_002250 C/T N29S plus 23787384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18699 rs2253849 KLRC1 3821 12 10494937 NM_002259 NP_002250 C/T N29S plus 23787384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18700 rs2253849 KLRC1 3821 12 10494937 NM_002259 NP_002250 C/T N29S plus 23787384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18701 rs2253849 KLRC1 3821 12 10494937 NM_007328 NP_015567 C/T N29S plus 23787384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18702 rs2253849 KLRC1 3821 12 10494937 NM_007328 NP_015567 C/T N29S plus 23787384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18703 rs2253849 KLRC1 3821 12 10494937 NM_007328 NP_015567 C/T N29S plus 23787384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18704 rs2253849 KLRC1 3821 12 10494937 NM_213657 NP_998822 C/T N29S plus 23787384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18705 rs2253849 KLRC1 3821 12 10494937 NM_213657 NP_998822 C/T N29S plus 23787384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18706 rs2253849 KLRC1 3821 12 10494937 NM_213657 NP_998822 C/T N29S plus 23787384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18707 rs2253849 KLRC1 3821 12 10494937 NM_213658 NP_998823 C/T N29S plus 23787384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18708 rs2253849 KLRC1 3821 12 10494937 NM_213658 NP_998823 C/T N29S plus 23787384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18709 rs2253849 KLRC1 3821 12 10494937 NM_213658 NP_998823 C/T N29S plus 23787384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13 "killer cell lectin-like receptor subfamily C, member 1" 18710 rs2254524 LSS 4047 21 46438897 NM_001001438 NP_001001438 A/C L642V plus 3214802 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.22 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18711 rs2254524 LSS 4047 21 46438897 NM_001001438 NP_001001438 A/C L642V plus 4020195 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.28 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18712 rs2254524 LSS 4047 21 46438897 NM_001001438 NP_001001438 A/C L642V plus 24531806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18713 rs2254524 LSS 4047 21 46438897 NM_001001438 NP_001001438 A/C L642V plus 24531806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18714 rs2254524 LSS 4047 21 46438897 NM_001001438 NP_001001438 A/C L642V plus 24531806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18715 rs2254524 LSS 4047 21 46438897 NM_002340 NP_002331 A/C L642V plus 3214802 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.22 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18716 rs2254524 LSS 4047 21 46438897 NM_002340 NP_002331 A/C L642V plus 4020195 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.28 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18717 rs2254524 LSS 4047 21 46438897 NM_002340 NP_002331 A/C L642V plus 24531806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18718 rs2254524 LSS 4047 21 46438897 NM_002340 NP_002331 A/C L642V plus 24531806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18719 rs2254524 LSS 4047 21 46438897 NM_002340 NP_002331 A/C L642V plus 24531806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 18720 rs2254562 SYNJ1 8867 21 32981223 NM_003895 NP_003886 C/T K295R plus 4012941 634 PERLEGEN NCBI|NIHPDR NIHPDR 12 0.42 100 "HapMap,submitter,freq,cluster" 21q22.2 synaptojanin 1 18721 rs2254562 SYNJ1 8867 21 32981223 NM_003895 NP_003886 C/T K295R plus 4012941 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 100 "HapMap,submitter,freq,cluster" 21q22.2 synaptojanin 1 18722 rs2254562 SYNJ1 8867 21 32981223 NM_203446 NP_982271 C/T K295R plus 4012941 634 PERLEGEN NCBI|NIHPDR NIHPDR 12 0.42 100 "HapMap,submitter,freq,cluster" 21q22.2 synaptojanin 1 18723 rs2254562 SYNJ1 8867 21 32981223 NM_203446 NP_982271 C/T K295R plus 4012941 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 100 "HapMap,submitter,freq,cluster" 21q22.2 synaptojanin 1 18724 rs2254796 ZNF294 26046 21 29263762 NM_015565 NP_056380 A/G L403S plus 3823482 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 119 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 zinc finger protein 294 18725 rs2254796 ZNF294 26046 21 29263762 NM_015565 NP_056380 A/G L403S plus 4010296 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.33 119 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 zinc finger protein 294 18726 rs2255255 CRNKL1 51340 20 19980998 NM_016652 NP_057736 C/T T158A plus 3208360 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.42 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18727 rs2255255 CRNKL1 51340 20 19980998 NM_016652 NP_057736 C/T T158A plus 23561309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18728 rs2255255 CRNKL1 51340 20 19980998 NM_016652 NP_057736 C/T T158A plus 23561309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18729 rs2255255 CRNKL1 51340 20 19980998 NM_016652 NP_057736 C/T T158A plus 23561309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18730 rs2255258 CRNKL1 51340 20 19981137 NM_016652 NP_057736 A/T Q111H plus 3208361 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.08 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18731 rs2255258 CRNKL1 51340 20 19981137 NM_016652 NP_057736 A/T Q111H plus 23561320 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18732 rs2255258 CRNKL1 51340 20 19981137 NM_016652 NP_057736 A/T Q111H plus 23561320 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18733 rs2255258 CRNKL1 51340 20 19981137 NM_016652 NP_057736 A/T Q111H plus 23561320 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 18734 rs2255317 MATN2 4147 8 99113704 NM_002380 NP_002371 A/G T855M minus 3253562 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.16 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18735 rs2255317 MATN2 4147 8 99113704 NM_002380 NP_002371 A/G T855M minus 4068282 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18736 rs2255317 MATN2 4147 8 99113704 NM_002380 NP_002371 A/G T855M minus 23516613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18737 rs2255317 MATN2 4147 8 99113704 NM_002380 NP_002371 A/G T855M minus 23516613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18738 rs2255317 MATN2 4147 8 99113704 NM_002380 NP_002371 A/G T855M minus 23516613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18739 rs2255317 MATN2 4147 8 99113704 NM_030583 NP_085072 A/G T855M minus 3253562 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.16 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18740 rs2255317 MATN2 4147 8 99113704 NM_030583 NP_085072 A/G T855M minus 4068282 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18741 rs2255317 MATN2 4147 8 99113704 NM_030583 NP_085072 A/G T855M minus 23516613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18742 rs2255317 MATN2 4147 8 99113704 NM_030583 NP_085072 A/G T855M minus 23516613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18743 rs2255317 MATN2 4147 8 99113704 NM_030583 NP_085072 A/G T855M minus 23516613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8q22 matrilin 2 18744 rs2255336 KLRK1 22914 12 10423593 NM_007360 NP_031386 A/G T72A minus 3859325 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.16 123 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 18745 rs2255336 KLRK1 22914 12 10423593 NM_007360 NP_031386 A/G T72A minus 23787285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 18746 rs2255336 KLRK1 22914 12 10423593 NM_007360 NP_031386 A/G T72A minus 23787285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 18747 rs2255336 KLRK1 22914 12 10423593 NM_007360 NP_031386 A/G T72A minus 23787285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 18748 rs2255703 PLXND1 23129 3 130775954 NM_015103 NP_055918 C/T M870V plus 3225453 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.37 123 "by doubleHit,freq,cluster" 3q21.3 plexin D1 18749 rs2255703 PLXND1 23129 3 130775954 NM_015103 NP_055918 C/T M870V plus 23910228 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 3q21.3 plexin D1 18750 rs2255703 PLXND1 23129 3 130775954 NM_015103 NP_055918 C/T M870V plus 23910228 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.39 123 "by doubleHit,freq,cluster" 3q21.3 plexin D1 18751 rs2255703 PLXND1 23129 3 130775954 NM_015103 NP_055918 C/T M870V plus 23910228 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 3q21.3 plexin D1 18752 rs2256721 CHIA 27159 1 111574994 NM_021797 NP_068569 G/T V324G plus 3221162 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.45 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18753 rs2256721 CHIA 27159 1 111574994 NM_021797 NP_068569 G/T V324G plus 23875570 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18754 rs2256721 CHIA 27159 1 111574994 NM_021797 NP_068569 G/T V324G plus 23875570 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18755 rs2256721 CHIA 27159 1 111574994 NM_021797 NP_068569 G/T V324G plus 23875570 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18756 rs2256721 CHIA 27159 1 111574994 NM_201653 NP_970615 G/T V324G plus 3221162 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.45 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18757 rs2256721 CHIA 27159 1 111574994 NM_201653 NP_970615 G/T V324G plus 23875570 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18758 rs2256721 CHIA 27159 1 111574994 NM_201653 NP_970615 G/T V324G plus 23875570 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18759 rs2256721 CHIA 27159 1 111574994 NM_201653 NP_970615 G/T V324G plus 23875570 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 18760 rs2256734 ITIH4 3700 3 52827528 NM_002218 NP_002209 C/G M714I plus 3213444 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0 123 "HapMap,doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 18761 rs2256734 ITIH4 3700 3 52827528 NM_002218 NP_002209 C/G M714I plus 3554343 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 123 "HapMap,doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 18762 rs2256734 ITIH4 3700 3 52827528 NM_002218 NP_002209 C/G M714I plus 23310726 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 18763 rs2256734 ITIH4 3700 3 52827528 NM_002218 NP_002209 C/G M714I plus 23310726 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 18764 rs2256734 ITIH4 3700 3 52827528 NM_002218 NP_002209 C/G M714I plus 23310726 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 18765 rs2256871 CYP2C9 1559 10 96698964 NM_000771 NP_000762 C/T H251R minus 12588508 693 EGP_SNPS PDR90 NIHPDR 176 0.01 120 "HapMap,doubleHit,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 18766 rs2256871 CYP2C9 1559 10 96698964 NM_000771 NP_000762 C/T H251R minus 12588508 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.01 120 "HapMap,doubleHit,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 18767 rs2257020 LGICZ 353174 17 71588010 NM_180990 NP_851321 A/G A151T plus 24099555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 17q25.3 ligand-gated ion channel subunit 18768 rs2257020 LGICZ 353174 17 71588010 NM_180990 NP_851321 A/G A151T plus 24099555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 17q25.3 ligand-gated ion channel subunit 18769 rs2257020 LGICZ 353174 17 71588010 NM_180990 NP_851321 A/G A151T plus 24099555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 19 0.5 123 "by doubleHit,freq,cluster" 17q25.3 ligand-gated ion channel subunit 18770 rs2257167 IFNAR1 3454 21 33637569 NM_000629 NP_000620 C/G V168L plus 4013264 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 1" 18771 rs2257167 IFNAR1 3454 21 33637569 NM_000629 NP_000620 C/G V168L plus 14438710 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 1" 18772 rs2257167 IFNAR1 3454 21 33637569 NM_000629 NP_000620 C/G V168L plus 24116232 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 1" 18773 rs2257167 IFNAR1 3454 21 33637569 NM_000629 NP_000620 C/G V168L plus 24116232 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 1" 18774 rs2257167 IFNAR1 3454 21 33637569 NM_000629 NP_000620 C/G V168L plus 24116232 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 1" 18775 rs2257212 SLC15A2 6565 3 123126494 NM_021082 NP_066568 A/G L350F minus 3236720 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.28 120 "by doubleHit,freq,cluster" 3q21.1 "solute carrier family 15 (H+/peptide transporter), member 2" 18776 rs2257295 CLDN6 9074 16 3005597 NM_021195 NP_067018 A/G I143V minus 3204170 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.21 116 "by doubleHit,freq,cluster" 16p13.3 claudin 6 18777 rs2257401 CYP3A7 1551 7 98951336 NM_000765 NP_000756 C/G R409T plus 3207097 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.26 121 "HapMap,doubleHit,freq,cluster" 7q21-q22.1 "cytochrome P450, family 3, subfamily A, polypeptide 7" 18778 rs2257401 CYP3A7 1551 7 98951336 NM_000765 NP_000756 C/G R409T plus 3868318 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,doubleHit,freq,cluster" 7q21-q22.1 "cytochrome P450, family 3, subfamily A, polypeptide 7" 18779 rs2258689 MAPT 4137 17 41423219 NM_016835 NP_058519 C/T H441Y plus 3250605 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.45 123 "HapMap,submitter,freq,cluster" 17q21.1 microtubule-associated protein tau 18780 rs2258689 MAPT 4137 17 41423219 NM_016835 NP_058519 C/T H441Y plus 3412711 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,submitter,freq,cluster" 17q21.1 microtubule-associated protein tau 18781 rs2258689 MAPT 4137 17 41423219 NM_016835 NP_058519 C/T H441Y plus 24573522 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,submitter,freq,cluster" 17q21.1 microtubule-associated protein tau 18782 rs2258689 MAPT 4137 17 41423219 NM_016835 NP_058519 C/T H441Y plus 24573522 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,submitter,freq,cluster" 17q21.1 microtubule-associated protein tau 18783 rs2258689 MAPT 4137 17 41423219 NM_016835 NP_058519 C/T H441Y plus 24573522 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 17q21.1 microtubule-associated protein tau 18784 rs2258983 SIGLEC9 27180 19 56322294 NM_014441 NP_055256 A/C A315E plus 3219083 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.45 121 "by doubleHit,freq,cluster" 19q13.41 sialic acid binding Ig-like lectin 9 18785 rs2259102 MUC4 4585 3 196986721 NM_004532 NP_004523 C/G M201I plus 3236188 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.18 121 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18786 rs2259102 MUC4 4585 3 196986721 NM_138297 NP_612154 C/G M150I plus 3236188 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.18 121 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18787 rs2259292 MUC4 4585 3 196990696 NM_004532 NP_004523 C/T G88D plus 3236191 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 121 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18788 rs2259292 MUC4 4585 3 196990696 NM_138297 NP_612154 C/T G37D plus 3236191 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 121 "by doubleHit,freq,cluster" 3q29 "mucin 4, tracheobronchial" 18789 rs2260545 ARP3BETA 57180 7 151958139 NM_020445 NP_065178 A/G R250Q plus 3226917 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.18 123 "by doubleHit,freq,cluster" 7q32-q36 actin-related protein 3-beta 18790 rs2262065 KIR2DS2 3807 19 282779 NM_012312 NP_036444 A/G K237E plus 3239702 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.19 100 "by cluster,freq" 19q13.4 "killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2" 18791 rs2266607 MPG 4350 16 69595 NM_002434 NP_002425 C/T Y71H plus 869724 506 NCBI NIHPDR NIHPDR 802 0 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 18792 rs2266607 MPG 4350 16 69595 NM_002434 NP_002425 C/T Y71H plus 4388569 693 EGP_SNPS PDR90 NIHPDR 178 0.01 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 18793 rs2266607 MPG 4350 16 69595 NM_002434 NP_002425 C/T Y71H plus 4388569 1303 SEQUENOM CEPH CEPH (92) 92 1 106 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 18794 rs2266631 GSTA2 2939 6 52724434 NM_000846 NP_000837 C/T V149A minus 869775 506 NCBI NIHPDR NIHPDR 94 0.18 100 by freq 6p12.1 glutathione S-transferase A2 18795 rs2266633 GSTT1 2952 22 22701483 NM_000853 NP_000844 A/G D141N minus 869783 506 NCBI NIHPDR NIHPDR 80 0.03 100 by freq 22q11.23 glutathione S-transferase theta 1 18796 rs2266633 GSTT1 2952 22 22701483 NM_000853 NP_000844 A/G D141N minus 869783 1303 SEQUENOM CEPH CEPH (92) 92 1 100 by freq 22q11.23 glutathione S-transferase theta 1 18797 rs2266637 GSTT1 2952 22 22701399 NM_000853 NP_000844 A/G V169I minus 869788 506 NCBI NIHPDR NIHPDR 80 0.04 100 by freq 22q11.23 glutathione S-transferase theta 1 18798 rs2266637 GSTT1 2952 22 22701399 NM_000853 NP_000844 A/G V169I minus 869788 1303 SEQUENOM CEPH CEPH (92) 92 1 100 by freq 22q11.23 glutathione S-transferase theta 1 18799 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 2667785 506 NCBI NIHPDR NIHPDR 184 0.13 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18800 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 4329127 693 EGP_SNPS PDR90 NIHPDR 178 0.08 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18801 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 4329127 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18802 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 4951097 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.08 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18803 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 5586332 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.15 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18804 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 5586332 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.12 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18805 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 5586332 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18806 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 5586332 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18807 rs2266690 CCNH 902 5 86731030 NM_001239 NP_001230 C/T V270A minus 5586332 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.21 120 "HapMap,freq,cluster" 5q13.3-q14 cyclin H 18808 rs2266691 CCNH 902 5 86739661 NM_001239 NP_001230 A/G K138R minus 2667786 506 NCBI NIHPDR NIHPDR 166 0.02 110 "by cluster,freq" 5q13.3-q14 cyclin H 18809 rs2266691 CCNH 902 5 86739661 NM_001239 NP_001230 A/G K138R minus 4329092 693 EGP_SNPS PDR90 NIHPDR 154 0.03 110 "by cluster,freq" 5q13.3-q14 cyclin H 18810 rs2266780 FMO3 2328 1 167814900 NM_006894 NP_008825 A/G E308G plus 2978147 506 NCBI NIHPDR NIHPDR 86 0.09 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 18811 rs2266780 FMO3 2328 1 167814900 NM_006894 NP_008825 A/G E308G plus 24271795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 18812 rs2266780 FMO3 2328 1 167814900 NM_006894 NP_008825 A/G E308G plus 24271795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 18813 rs2266780 FMO3 2328 1 167814900 NM_006894 NP_008825 A/G E308G plus 24271795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 3 18814 rs2266782 FMO3 2328 1 167808624 NM_006894 NP_008825 A/G E158K plus 2978149 506 NCBI NIHPDR NIHPDR 82 0.26 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 18815 rs2266782 FMO3 2328 1 167808624 NM_006894 NP_008825 A/G E158K plus 4924810 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.2 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 18816 rs2266782 FMO3 2328 1 167808624 NM_006894 NP_008825 A/G E158K plus 23197307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 18817 rs2266782 FMO3 2328 1 167808624 NM_006894 NP_008825 A/G E158K plus 23197307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 18818 rs2266782 FMO3 2328 1 167808624 NM_006894 NP_008825 A/G E158K plus 23197307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 1q23-q25 flavin containing monooxygenase 3 18819 rs2266988 PRAME 23532 22 21223788 NM_006115 NP_006106 A/G W7R plus 3200201 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.23 123 "by doubleHit,submitter,freq,cluster" 22q11.22 preferentially expressed antigen in melanoma 18820 rs2266988 PRAME 23532 22 21223788 NM_006115 NP_006106 A/G W7R plus 24562973 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 22q11.22 preferentially expressed antigen in melanoma 18821 rs2266988 PRAME 23532 22 21223788 NM_006115 NP_006106 A/G W7R plus 24562973 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 22q11.22 preferentially expressed antigen in melanoma 18822 rs2266988 PRAME 23532 22 21223788 NM_006115 NP_006106 A/G W7R plus 24562973 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 22q11.22 preferentially expressed antigen in melanoma 18823 rs2267161 GAL3ST1 9514 22 29277849 NM_004861 NP_004852 C/T V29M plus 3200412 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.34 120 "HapMap,doubleHit,submitter,freq,cluster" 22q12.2 galactose-3-O-sulfotransferase 1 18824 rs2267161 GAL3ST1 9514 22 29277849 NM_004861 NP_004852 C/T V29M plus 11007280 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,submitter,freq,cluster" 22q12.2 galactose-3-O-sulfotransferase 1 18825 rs2267821 WBSCR23 80112 7 73392045 NM_025042 NP_079318 G/T S125R minus 3201293 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.41 123 "by cluster,freq" 7q11.23 Williams-Beuren syndrome chromosome region 23 18826 rs2267821 WBSCR23 80112 7 73392045 NM_025042 NP_079318 G/T S125R minus 24017381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 7q11.23 Williams-Beuren syndrome chromosome region 23 18827 rs2267821 WBSCR23 80112 7 73392045 NM_025042 NP_079318 G/T S125R minus 24017381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7q11.23 Williams-Beuren syndrome chromosome region 23 18828 rs2267821 WBSCR23 80112 7 73392045 NM_025042 NP_079318 G/T S125R minus 24017381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by cluster,freq" 7q11.23 Williams-Beuren syndrome chromosome region 23 18829 rs2269383 CPT1B 1375 22 49302919 NM_004377 NP_004368 A/G G320D minus 3203443 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.13 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18830 rs2269383 CPT1B 1375 22 49302919 NM_004377 NP_004368 A/G G320D minus 20139155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18831 rs2269383 CPT1B 1375 22 49302919 NM_004377 NP_004368 A/G G320D minus 24214985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18832 rs2269383 CPT1B 1375 22 49302919 NM_004377 NP_004368 A/G G320D minus 24214985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18833 rs2269383 CPT1B 1375 22 49302919 NM_004377 NP_004368 A/G G320D minus 24214985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18834 rs2269383 CPT1B 1375 22 49302919 NM_152245 NP_689451 A/G G320D minus 3203443 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.13 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18835 rs2269383 CPT1B 1375 22 49302919 NM_152245 NP_689451 A/G G320D minus 20139155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18836 rs2269383 CPT1B 1375 22 49302919 NM_152245 NP_689451 A/G G320D minus 24214985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18837 rs2269383 CPT1B 1375 22 49302919 NM_152245 NP_689451 A/G G320D minus 24214985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18838 rs2269383 CPT1B 1375 22 49302919 NM_152245 NP_689451 A/G G320D minus 24214985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18839 rs2269383 CPT1B 1375 22 49302919 NM_152246 NP_689452 A/G G320D minus 3203443 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.13 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18840 rs2269383 CPT1B 1375 22 49302919 NM_152246 NP_689452 A/G G320D minus 20139155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18841 rs2269383 CPT1B 1375 22 49302919 NM_152246 NP_689452 A/G G320D minus 24214985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18842 rs2269383 CPT1B 1375 22 49302919 NM_152246 NP_689452 A/G G320D minus 24214985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18843 rs2269383 CPT1B 1375 22 49302919 NM_152246 NP_689452 A/G G320D minus 24214985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 18844 rs2269383 CHKB-CPT1B 386593 22 49302919 NM_152247 NP_689453 A/G G320D minus 3203443 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.13 123 "HapMap,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 18845 rs2269383 CHKB-CPT1B 386593 22 49302919 NM_152247 NP_689453 A/G G320D minus 20139155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 18846 rs2269383 CHKB-CPT1B 386593 22 49302919 NM_152247 NP_689453 A/G G320D minus 24214985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 18847 rs2269383 CHKB-CPT1B 386593 22 49302919 NM_152247 NP_689453 A/G G320D minus 24214985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 18848 rs2269383 CHKB-CPT1B 386593 22 49302919 NM_152247 NP_689453 A/G G320D minus 24214985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 18849 rs2269428 TNXB 7148 6 32138178 NM_019105 NP_061978 A/C P2363H minus 3203507 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 123 by freq 6p21.3 tenascin XB 18850 rs2269428 TNXB 7148 6 32138178 NM_019105 NP_061978 A/C P2363H minus 24167184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 6p21.3 tenascin XB 18851 rs2269428 TNXB 7148 6 32138178 NM_019105 NP_061978 A/C P2363H minus 24167184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 6p21.3 tenascin XB 18852 rs2269428 TNXB 7148 6 32138178 NM_019105 NP_061978 A/C P2363H minus 24167184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 6p21.3 tenascin XB 18853 rs2269429 TNXB 7148 6 32137161 NM_019105 NP_061978 A/G G2555S minus 3203509 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 123 "HapMap,freq" 6p21.3 tenascin XB 18854 rs2269429 TNXB 7148 6 32137161 NM_019105 NP_061978 A/G G2555S minus 3203509 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq" 6p21.3 tenascin XB 18855 rs2269429 TNXB 7148 6 32137161 NM_019105 NP_061978 A/G G2555S minus 23714772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq" 6p21.3 tenascin XB 18856 rs2269429 TNXB 7148 6 32137161 NM_019105 NP_061978 A/G G2555S minus 23714772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq" 6p21.3 tenascin XB 18857 rs2269429 TNXB 7148 6 32137161 NM_019105 NP_061978 A/G G2555S minus 23714772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq" 6p21.3 tenascin XB 18858 rs2269432 NAT6 24142 3 50309235 NM_012191 NP_036323 A/T R244W plus 19523410 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 3p21.3 N-acetyltransferase 6 18859 rs2269475 AIF1 199 6 31691910 NM_004847 NP_004838 A/G R15W minus 3203564 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.26 123 "by cluster,freq" 6p21.3 allograft inflammatory factor 1 18860 rs2269475 AIF1 199 6 31691910 NM_004847 NP_004838 A/G R15W minus 23934984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 32 0.13 123 "by cluster,freq" 6p21.3 allograft inflammatory factor 1 18861 rs2269475 AIF1 199 6 31691910 NM_004847 NP_004838 A/G R15W minus 23934984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by cluster,freq" 6p21.3 allograft inflammatory factor 1 18862 rs2269475 AIF1 199 6 31691910 NM_004847 NP_004838 A/G R15W minus 23934984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.23 123 "by cluster,freq" 6p21.3 allograft inflammatory factor 1 18863 rs2269495 TNIP2 79155 4 2781293 NM_024309 NP_077285 C/T A396V minus 23891281 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 4p16.3 TNFAIP3 interacting protein 2 18864 rs2269495 TNIP2 79155 4 2781293 NM_024309 NP_077285 C/T A396V minus 23891281 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 4p16.3 TNFAIP3 interacting protein 2 18865 rs2269495 TNIP2 79155 4 2781293 NM_024309 NP_077285 C/T A396V minus 23891281 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 4p16.3 TNFAIP3 interacting protein 2 18866 rs2269497 RGS12 6002 4 3466825 NM_002926 NP_002917 A/G N1124S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18867 rs2269497 RGS12 6002 4 3466825 NM_002926 NP_002917 A/G N1124S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18868 rs2269497 RGS12 6002 4 3466825 NM_198227 NP_937870 A/G N476S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18869 rs2269497 RGS12 6002 4 3466825 NM_198227 NP_937870 A/G N476S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18870 rs2269497 RGS12 6002 4 3466825 NM_198229 NP_937872 A/G N1124S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18871 rs2269497 RGS12 6002 4 3466825 NM_198229 NP_937872 A/G N1124S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18872 rs2269497 RGS12 6002 4 3466825 NM_198230 NP_937873 A/G N323S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18873 rs2269497 RGS12 6002 4 3466825 NM_198230 NP_937873 A/G N323S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18874 rs2269497 RGS12 6002 4 3466825 NM_198430 NP_940832 A/G N468S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18875 rs2269497 RGS12 6002 4 3466825 NM_198430 NP_940832 A/G N468S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18876 rs2269497 RGS12 6002 4 3466825 NM_198587 NP_940989 A/G N522S plus 3203598 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.03 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18877 rs2269497 RGS12 6002 4 3466825 NM_198587 NP_940989 A/G N522S plus 3203598 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 100 "HapMap,freq" 4p16.3 regulator of G-protein signalling 12 18878 rs2269529 MYH9 4627 22 35008854 NM_002473 NP_002464 C/T I1626V plus 3203651 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 22q13.1 "myosin, heavy polypeptide 9, non-muscle" 18879 rs2269529 MYH9 4627 22 35008854 NM_002473 NP_002464 C/T I1626V plus 16923656 1303 SEQUENOM CEPH CEPH (92) 92 0.39 121 "HapMap,doubleHit,cluster" 22q13.1 "myosin, heavy polypeptide 9, non-muscle" 18880 rs2269619 DNAJB7 150353 22 39582377 NM_145174 NP_660157 G/T E41A plus 3203778 738 YUSUKE JBIC-ALLELE Japanese (752) 1096 0.08 100 "HapMap,freq" 22q13.2 "DnaJ (Hsp40) homolog, subfamily B, member 7" 18881 rs2269619 DNAJB7 150353 22 39582377 NM_145174 NP_660157 G/T E41A plus 3203778 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 100 "HapMap,freq" 22q13.2 "DnaJ (Hsp40) homolog, subfamily B, member 7" 18882 rs2269700 50514 9 115243117 NM_017418 NP_059114 C/T A60V plus 3203884 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.1 123 "HapMap,doubleHit,freq,cluster" 9q32 deleted in esophageal cancer 1 18883 rs2269700 50514 9 115243117 NM_017418 NP_059114 C/T A60V plus 3203884 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 9q32 deleted in esophageal cancer 1 18884 rs2269700 50514 9 115243117 NM_017418 NP_059114 C/T A60V plus 24623377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 9q32 deleted in esophageal cancer 1 18885 rs2269700 50514 9 115243117 NM_017418 NP_059114 C/T A60V plus 24623377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 9q32 deleted in esophageal cancer 1 18886 rs2269700 50514 9 115243117 NM_017418 NP_059114 C/T A60V plus 24623377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 9q32 deleted in esophageal cancer 1 18887 rs2269714 CD1A 909 1 155037977 NM_001763 NP_001754 C/T T30I plus 3203908 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.31 123 "by cluster,freq" 1q22-q23 "CD1A antigen, a polypeptide" 18888 rs2269714 CD1A 909 1 155037977 NM_001763 NP_001754 C/T T30I plus 23870589 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q22-q23 "CD1A antigen, a polypeptide" 18889 rs2269714 CD1A 909 1 155037977 NM_001763 NP_001754 C/T T30I plus 23870589 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1q22-q23 "CD1A antigen, a polypeptide" 18890 rs2269714 CD1A 909 1 155037977 NM_001763 NP_001754 C/T T30I plus 23870589 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1q22-q23 "CD1A antigen, a polypeptide" 18891 rs2269715 CD1A 909 1 155038092 NM_001763 NP_001754 C/G C68W plus 3203909 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.32 123 "by submitter,freq,cluster" 1q22-q23 "CD1A antigen, a polypeptide" 18892 rs2269715 CD1A 909 1 155038092 NM_001763 NP_001754 C/G C68W plus 23870597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 1q22-q23 "CD1A antigen, a polypeptide" 18893 rs2269715 CD1A 909 1 155038092 NM_001763 NP_001754 C/G C68W plus 23870597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 1q22-q23 "CD1A antigen, a polypeptide" 18894 rs2269715 CD1A 909 1 155038092 NM_001763 NP_001754 C/G C68W plus 23870597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by submitter,freq,cluster" 1q22-q23 "CD1A antigen, a polypeptide" 18895 rs2269961 SEC14L3 266629 22 29185384 NM_174975 NP_777635 C/T R214H plus 3204235 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq" 22q12.2 SEC14-like 3 (S. cerevisiae) 18896 rs2269961 SEC14L3 266629 22 29185384 NM_174975 NP_777635 C/T R214H plus 24587577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq" 22q12.2 SEC14-like 3 (S. cerevisiae) 18897 rs2269961 SEC14L3 266629 22 29185384 NM_174975 NP_777635 C/T R214H plus 24587577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,submitter,freq" 22q12.2 SEC14-like 3 (S. cerevisiae) 18898 rs2269961 SEC14L3 266629 22 29185384 NM_174975 NP_777635 C/T R214H plus 24587577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq" 22q12.2 SEC14-like 3 (S. cerevisiae) 18899 rs2269970 COG5 10466 7 106596757 NM_006348 NP_006339 A/G F330L plus 3204245 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.38 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18900 rs2269970 COG5 10466 7 106596757 NM_006348 NP_006339 A/G F330L plus 24441117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18901 rs2269970 COG5 10466 7 106596757 NM_006348 NP_006339 A/G F330L plus 24441117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18902 rs2269970 COG5 10466 7 106596757 NM_006348 NP_006339 A/G F330L plus 24441117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18903 rs2269970 COG5 10466 7 106596757 NM_181733 NP_859422 A/G F330L plus 3204245 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.38 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18904 rs2269970 COG5 10466 7 106596757 NM_181733 NP_859422 A/G F330L plus 24441117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18905 rs2269970 COG5 10466 7 106596757 NM_181733 NP_859422 A/G F330L plus 24441117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18906 rs2269970 COG5 10466 7 106596757 NM_181733 NP_859422 A/G F330L plus 24441117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 7q22-q31 component of oligomeric golgi complex 5 18907 rs2270004 DKFZp727A071 25973 1 54936152 NM_152268 NP_689481 A/G N235S minus 3204284 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.21 100 by freq 1p32.2 similar to tRNA synthetase class II 18908 rs2270182 NRAP 4892 10 115382909 NM_006175 NP_006166 A/T N484I minus 23637625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18909 rs2270182 NRAP 4892 10 115382909 NM_006175 NP_006166 A/T N484I minus 23637625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18910 rs2270182 NRAP 4892 10 115382909 NM_006175 NP_006166 A/T N484I minus 23637625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18911 rs2270182 NRAP 4892 10 115382909 NM_198060 NP_932326 A/T N519I minus 23637625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18912 rs2270182 NRAP 4892 10 115382909 NM_198060 NP_932326 A/T N519I minus 23637625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18913 rs2270182 NRAP 4892 10 115382909 NM_198060 NP_932326 A/T N519I minus 23637625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 10q24-q26 nebulin-related anchoring protein 18914 rs2270192 VENTX2 27287 10 134942120 NM_014468 NP_055283 C/T E101K minus 3204528 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.02 100 by freq 10q26.3 VENT-like homeobox 2 18915 rs2270416 CDH15 1013 16 87788983 NM_004933 NP_004924 G/T Y788X minus 3204825 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.17 100 by freq 16q24.3 "cadherin 15, M-cadherin (myotubule)" 18916 rs2270439 BTRC 8945 10 103300564 NM_003939 NP_003930 A/C P556H plus 3204861 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 10q24.32 beta-transducin repeat containing 18917 rs2270439 BTRC 8945 10 103300564 NM_033637 NP_378663 A/C P592H plus 3204861 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 10q24.32 beta-transducin repeat containing 18918 rs2270493 ZNF597 146434 16 3430880 NM_152457 NP_689670 A/T T30S plus 3204940 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.04 100 "HapMap,freq" 16p13.3 zinc finger protein 597 18919 rs2270493 ZNF597 146434 16 3430880 NM_152457 NP_689670 A/T T30S plus 3204940 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 100 "HapMap,freq" 16p13.3 zinc finger protein 597 18920 rs2270515 MICAL2 9645 11 12237952 NM_014632 NP_055447 A/G R1089Q plus 3204965 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 by freq 11p15.3 flavoprotein oxidoreductase MICAL2 18921 rs2270516 JMJD3 23135 17 7691161 XM_043272 XP_043272 C/T S308L plus 3204966 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.18 100 HapMap 17p13.1 jumonji domain containing 3 18922 rs2270516 JMJD3 23135 17 7691161 XM_043272 XP_043272 C/T S308L plus 3204966 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17p13.1 jumonji domain containing 3 18923 rs2270565 UCP1 7350 4 141841076 NM_021833 NP_068605 A/T M229L plus 3205041 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.08 100 "by submitter,freq" 4q28-q31 "uncoupling protein 1 (mitochondrial, proton carrier)" 18924 rs2270569 KIF9 64147 3 47291846 NM_022342 NP_071737 A/G V78I minus 3205050 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.01 100 HapMap 3p21.31 kinesin family member 9 18925 rs2270569 KIF9 64147 3 47291846 NM_022342 NP_071737 A/G V78I minus 3205050 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 100 HapMap 3p21.31 kinesin family member 9 18926 rs2270569 KIF9 64147 3 47291846 NM_182902 NP_878905 A/G V78I minus 3205050 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.01 100 HapMap 3p21.31 kinesin family member 9 18927 rs2270569 KIF9 64147 3 47291846 NM_182902 NP_878905 A/G V78I minus 3205050 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 100 HapMap 3p21.31 kinesin family member 9 18928 rs2270569 KIF9 64147 3 47291846 NM_182903 NP_878906 A/G V78I minus 3205050 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.01 100 HapMap 3p21.31 kinesin family member 9 18929 rs2270569 KIF9 64147 3 47291846 NM_182903 NP_878906 A/G V78I minus 3205050 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 100 HapMap 3p21.31 kinesin family member 9 18930 rs2270577 RND1 27289 12 47544910 NM_014470 NP_055285 C/G P44R plus 3205059 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0 100 by freq 12q12-q13 Rho family GTPase 1 18931 rs2270581 HEM1 3071 12 53197693 NM_005337 NP_005328 A/G S402L minus 3205063 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 123 "HapMap,submitter,freq" 12q13.1 hematopoietic protein 1 18932 rs2270581 HEM1 3071 12 53197693 NM_005337 NP_005328 A/G S402L minus 3205063 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.07 123 "HapMap,submitter,freq" 12q13.1 hematopoietic protein 1 18933 rs2270581 HEM1 3071 12 53197693 NM_005337 NP_005328 A/G S402L minus 24397388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq" 12q13.1 hematopoietic protein 1 18934 rs2270581 HEM1 3071 12 53197693 NM_005337 NP_005328 A/G S402L minus 24397388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq" 12q13.1 hematopoietic protein 1 18935 rs2270581 HEM1 3071 12 53197693 NM_005337 NP_005328 A/G S402L minus 24397388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq" 12q13.1 hematopoietic protein 1 18936 rs2270637 SLC18A1 6570 8 20081107 NM_003053 NP_003044 C/G S98T plus 3205143 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.25 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18937 rs2270637 SLC18A1 6570 8 20081107 NM_003053 NP_003044 C/G S98T plus 23713226 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18938 rs2270637 SLC18A1 6570 8 20081107 NM_003053 NP_003044 C/G S98T plus 23713226 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18939 rs2270637 SLC18A1 6570 8 20081107 NM_003053 NP_003044 C/G S98T plus 23713226 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18940 rs2270637 SLC18A1 6570 8 20081107 NM_003053 NP_003044 C/G S98T plus 28447303 914 HG_BONN_CNS_SNPS EURO96 European 128 0.17 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18941 rs2270641 SLC18A1 6570 8 20082746 NM_003053 NP_003044 G/T T4P plus 3205147 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.36 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18942 rs2270641 SLC18A1 6570 8 20082746 NM_003053 NP_003044 G/T T4P plus 24649241 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18943 rs2270641 SLC18A1 6570 8 20082746 NM_003053 NP_003044 G/T T4P plus 24649241 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18944 rs2270641 SLC18A1 6570 8 20082746 NM_003053 NP_003044 G/T T4P plus 24649241 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18945 rs2270641 SLC18A1 6570 8 20082746 NM_003053 NP_003044 G/T T4P plus 28447300 914 HG_BONN_CNS_SNPS EURO96 European 128 0.36 123 "by cluster,freq" 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 18946 rs2270655 MMAA 166785 4 146934023 NM_172250 NP_758454 C/G Q363H plus 3205163 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.08 100 by freq 4q31.21 methylmalonic aciduria (cobalamin deficiency) type A 18947 rs2270716 SDK2 54549 17 68891682 NM_019064 NP_061937 C/G L1169V plus 3205246 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.16 100 "HapMap,freq" 17q25.1-q25.2 sidekick homolog 2 (chicken) 18948 rs2270716 SDK2 54549 17 68891682 NM_019064 NP_061937 C/G L1169V plus 3205246 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 100 "HapMap,freq" 17q25.1-q25.2 sidekick homolog 2 (chicken) 18949 rs2270724 SDK2 54549 17 68895675 NM_019064 NP_061937 C/G S1054C plus 3205254 738 YUSUKE JBIC-ALLELE Japanese (752) 1440 0.08 100 HapMap 17q25.1-q25.2 sidekick homolog 2 (chicken) 18950 rs2270724 SDK2 54549 17 68895675 NM_019064 NP_061937 C/G S1054C plus 3205254 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q25.1-q25.2 sidekick homolog 2 (chicken) 18951 rs2270738 MYO1A 4640 12 55718083 NM_005379 NP_005370 C/T F600L minus 3205275 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 100 by freq 12q13-q15 myosin IA 18952 rs2270812 ICF45 54974 5 157097540 NM_017872 NP_060342 A/G L232P minus 3205369 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.2 123 "by submitter,freq,cluster" 5q33.3 interphase cyctoplasmic foci protein 45 18953 rs2270812 ICF45 54974 5 157097540 NM_017872 NP_060342 A/G L232P minus 24477494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq,cluster" 5q33.3 interphase cyctoplasmic foci protein 45 18954 rs2270812 ICF45 54974 5 157097540 NM_017872 NP_060342 A/G L232P minus 24477494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 5q33.3 interphase cyctoplasmic foci protein 45 18955 rs2270812 ICF45 54974 5 157097540 NM_017872 NP_060342 A/G L232P minus 24477494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 5q33.3 interphase cyctoplasmic foci protein 45 18956 rs2270898 DOCK2 1794 5 169441471 NM_004946 NP_004937 A/T T1779S minus 3205480 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 HapMap 5q35.1 dedicator of cytokinesis 2 18957 rs2270898 DOCK2 1794 5 169441471 NM_004946 NP_004937 A/T T1779S minus 3205480 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 5q35.1 dedicator of cytokinesis 2 18958 rs2270915 NPR3 4883 5 32822146 NM_000908 NP_000899 A/G N521D plus 3205516 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.22 123 "HapMap,submitter,freq,cluster" 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 18959 rs2270915 NPR3 4883 5 32822146 NM_000908 NP_000899 A/G N521D plus 3205516 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,submitter,freq,cluster" 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 18960 rs2270915 NPR3 4883 5 32822146 NM_000908 NP_000899 A/G N521D plus 24011877 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 18961 rs2270915 NPR3 4883 5 32822146 NM_000908 NP_000899 A/G N521D plus 24011877 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 18962 rs2270915 NPR3 4883 5 32822146 NM_000908 NP_000899 A/G N521D plus 24011877 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 5p14-p13 natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C) 18963 rs2270927 SV2C 22987 5 75627466 XM_043493 XP_043493 C/G T482S minus 3205531 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.23 123 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 18964 rs2270927 SV2C 22987 5 75627466 XM_043493 XP_043493 C/G T482S minus 10250780 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 18965 rs2270927 SV2C 22987 5 75627466 XM_043493 XP_043493 C/G T482S minus 24189133 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 18966 rs2270927 SV2C 22987 5 75627466 XM_043493 XP_043493 C/G T482S minus 24189133 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 18967 rs2270927 SV2C 22987 5 75627466 XM_043493 XP_043493 C/G T482S minus 24189133 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 5q13.3 synaptic vesicle glycoprotein 2C 18968 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 3205549 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18969 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 99 0.5 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18970 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 775 SNP500CANCER CAUC1 Caucasian (31) 56 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18971 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18972 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 777 SNP500CANCER HISP1 Hispanic (23) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18973 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18974 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 6903783 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18975 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 24225624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18976 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 24225624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18977 rs2270941 DHDH 27294 19 54130175 NM_014475 NP_055290 C/T S66N minus 24225624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 18978 rs2270945 TULP2 7288 19 54083234 NM_003323 NP_003314 A/G E245K minus 3205553 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0 100 HapMap 19q13.1 tubby like protein 2 18979 rs2270945 TULP2 7288 19 54083234 NM_003323 NP_003314 A/G E245K minus 3205553 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 19q13.1 tubby like protein 2 18980 rs2270950 DCC 1630 18 49239779 NM_005215 NP_005206 A/T H1191L minus 3205566 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q21.3 deleted in colorectal carcinoma 18981 rs2270962 CWF19L1 55280 10 102006034 NM_018294 NP_060764 A/G C160Y minus 3205579 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1470 0.09 123 "by doubleHit,freq,cluster" 10q24.31 "CWF19-like 1, cell cycle control (S. pombe)" 18982 rs2270962 CWF19L1 55280 10 102006034 NM_018294 NP_060764 A/G C160Y minus 23491202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24.31 "CWF19-like 1, cell cycle control (S. pombe)" 18983 rs2270962 CWF19L1 55280 10 102006034 NM_018294 NP_060764 A/G C160Y minus 23491202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 10q24.31 "CWF19-like 1, cell cycle control (S. pombe)" 18984 rs2270962 CWF19L1 55280 10 102006034 NM_018294 NP_060764 A/G C160Y minus 23491202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24.31 "CWF19-like 1, cell cycle control (S. pombe)" 18985 rs2270968 MCCC1 56922 3 184237911 NM_020166 NP_064551 A/C H464P minus 3205590 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 123 "by cluster,freq" 3q27 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 18986 rs2270968 MCCC1 56922 3 184237911 NM_020166 NP_064551 A/C H464P minus 23334685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.32 123 "by cluster,freq" 3q27 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 18987 rs2270968 MCCC1 56922 3 184237911 NM_020166 NP_064551 A/C H464P minus 23334685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.36 123 "by cluster,freq" 3q27 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 18988 rs2270968 MCCC1 56922 3 184237911 NM_020166 NP_064551 A/C H464P minus 23334685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.33 123 "by cluster,freq" 3q27 methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 18989 rs2271001 ZDHHC13 54503 11 19124426 NM_019028 NP_061901 A/G K99R plus 3205627 738 YUSUKE JBIC-ALLELE Japanese (752) 686 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1 "zinc finger, DHHC domain containing 13" 18990 rs2271001 ZDHHC13 54503 11 19124426 NM_019028 NP_061901 A/G K99R plus 3205627 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1 "zinc finger, DHHC domain containing 13" 18991 rs2271001 ZDHHC13 54503 11 19124426 NM_019028 NP_061901 A/G K99R plus 23598853 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1 "zinc finger, DHHC domain containing 13" 18992 rs2271001 ZDHHC13 54503 11 19124426 NM_019028 NP_061901 A/G K99R plus 23598853 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1 "zinc finger, DHHC domain containing 13" 18993 rs2271001 ZDHHC13 54503 11 19124426 NM_019028 NP_061901 A/G K99R plus 23598853 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1 "zinc finger, DHHC domain containing 13" 18994 rs2271023 CDH16 1014 16 65505631 NM_004062 NP_004053 A/G H257Y plus 3205660 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.17 100 "HapMap,freq" 16q22.1 "cadherin 16, KSP-cadherin" 18995 rs2271023 CDH16 1014 16 65505631 NM_004062 NP_004053 A/G H257Y plus 3205660 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 100 "HapMap,freq" 16q22.1 "cadherin 16, KSP-cadherin" 18996 rs2271024 CDH16 1014 16 65506636 NM_004062 NP_004053 A/G L191F plus 3205661 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 by freq 16q22.1 "cadherin 16, KSP-cadherin" 18997 rs2271041 CNGA3 1261 2 98466870 NM_001298 NP_001289 A/G E198K plus 3205682 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 123 "HapMap,cluster" 2q11.2 cyclic nucleotide gated channel alpha 3 18998 rs2271041 CNGA3 1261 2 98466870 NM_001298 NP_001289 A/G E198K plus 3205682 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 2q11.2 cyclic nucleotide gated channel alpha 3 18999 rs2271041 CNGA3 1261 2 98466870 NM_001298 NP_001289 A/G E198K plus 23314637 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 2q11.2 cyclic nucleotide gated channel alpha 3 19000 rs2271041 CNGA3 1261 2 98466870 NM_001298 NP_001289 A/G E198K plus 23314637 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 2q11.2 cyclic nucleotide gated channel alpha 3 19001 rs2271041 CNGA3 1261 2 98466870 NM_001298 NP_001289 A/G E198K plus 23314637 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 2q11.2 cyclic nucleotide gated channel alpha 3 19002 rs2271042 DCC 1630 18 49086070 NM_005215 NP_005206 G/T L679R plus 3205685 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0 100 HapMap 18q21.3 deleted in colorectal carcinoma 19003 rs2271042 DCC 1630 18 49086070 NM_005215 NP_005206 G/T L679R plus 3205685 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q21.3 deleted in colorectal carcinoma 19004 rs2271051 HIP1R 9026 12 121868901 XM_290592 XP_290592 A/G V782M plus 3205699 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.19 123 "by cluster,freq" 12q24 huntingtin interacting protein-1-related 19005 rs2271051 HIP1R 9026 12 121868901 XM_290592 XP_290592 A/G V782M plus 23936415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 "by cluster,freq" 12q24 huntingtin interacting protein-1-related 19006 rs2271051 HIP1R 9026 12 121868901 XM_290592 XP_290592 A/G V782M plus 23936415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "by cluster,freq" 12q24 huntingtin interacting protein-1-related 19007 rs2271051 HIP1R 9026 12 121868901 XM_290592 XP_290592 A/G V782M plus 23936415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 12q24 huntingtin interacting protein-1-related 19008 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.21 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19009 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.05 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19010 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 901 AFFY AfAm 12 0.08 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19011 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 902 AFFY Caucasian 20 1 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19012 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 903 AFFY Asian 12 1 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19013 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 904 AFFY CEPH 12 1 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19014 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 3205740 905 AFFY PDpanel 44 0.02 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19015 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 24143627 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19016 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 24143627 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19017 rs2271077 GALNTL2 117248 3 16236424 NM_054110 NP_473451 C/T H510Y plus 24143627 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 3p25.1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2 19018 rs2271092 KLK3 354 19 56051355 NM_001648 NP_001639 C/T E32K minus 3205780 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 100 by freq 19q13.41 "kallikrein 3, (prostate specific antigen)" 19019 rs2271111 DOCK5 80005 8 25278082 NM_024940 NP_079216 C/T Q1023R minus 3205804 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.29 123 "by doubleHit,submitter,freq,cluster" 8p21.2 dedicator of cytokinesis 5 19020 rs2271111 DOCK5 80005 8 25278082 NM_024940 NP_079216 C/T Q1023R minus 24052740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 8p21.2 dedicator of cytokinesis 5 19021 rs2271111 DOCK5 80005 8 25278082 NM_024940 NP_079216 C/T Q1023R minus 24052740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,submitter,freq,cluster" 8p21.2 dedicator of cytokinesis 5 19022 rs2271111 DOCK5 80005 8 25278082 NM_024940 NP_079216 C/T Q1023R minus 24052740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 8p21.2 dedicator of cytokinesis 5 19023 rs2271129 A2BP1 54715 16 7508150 NM_018723 NP_061193 C/G G10R plus 3205824 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16p13.3 ataxin 2-binding protein 1 19024 rs2271129 A2BP1 54715 16 7508150 NM_145891 NP_665898 C/G G30R plus 3205824 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16p13.3 ataxin 2-binding protein 1 19025 rs2271129 A2BP1 54715 16 7508150 NM_145892 NP_665899 C/G G30R plus 3205824 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16p13.3 ataxin 2-binding protein 1 19026 rs2271129 A2BP1 54715 16 7508150 NM_145893 NP_665900 C/G G30R plus 3205824 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16p13.3 ataxin 2-binding protein 1 19027 rs2271188 ERBB3 2065 12 54781290 NM_001982 NP_001973 C/T R1127H minus 3205902 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 123 "HapMap,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 19028 rs2271188 ERBB3 2065 12 54781290 NM_001982 NP_001973 C/T R1127H minus 3205902 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 123 "HapMap,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 19029 rs2271188 ERBB3 2065 12 54781290 NM_001982 NP_001973 C/T R1127H minus 23923748 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 19030 rs2271188 ERBB3 2065 12 54781290 NM_001982 NP_001973 C/T R1127H minus 23923748 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 19031 rs2271188 ERBB3 2065 12 54781290 NM_001982 NP_001973 C/T R1127H minus 23923748 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,cluster" 12q13 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 19032 rs2271207 SRGAP2 9901 3 9030458 NM_014850 NP_055665 A/G I628V minus 3205925 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.02 123 "HapMap,freq,cluster" 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 19033 rs2271207 SRGAP2 9901 3 9030458 NM_014850 NP_055665 A/G I628V minus 3205925 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 123 "HapMap,freq,cluster" 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 19034 rs2271207 SRGAP2 9901 3 9030458 NM_014850 NP_055665 A/G I628V minus 23886933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 19035 rs2271207 SRGAP2 9901 3 9030458 NM_014850 NP_055665 A/G I628V minus 23886933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 19036 rs2271207 SRGAP2 9901 3 9030458 NM_014850 NP_055665 A/G I628V minus 23886933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 19037 rs2271211 ADAMTS2 9509 5 178703688 NM_014244 NP_055059 A/G V74M minus 3205935 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.07 100 HapMap 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 19038 rs2271211 ADAMTS2 9509 5 178703688 NM_014244 NP_055059 A/G V74M minus 3205935 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 5qter "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2" 19039 rs2271233 TEKT1 83659 17 6644845 NM_053285 NP_444515 C/T V332I plus 3205964 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 123 "HapMap,freq,cluster" 17p13.2 tektin 1 19040 rs2271233 TEKT1 83659 17 6644845 NM_053285 NP_444515 C/T V332I plus 3205964 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 17p13.2 tektin 1 19041 rs2271233 TEKT1 83659 17 6644845 NM_053285 NP_444515 C/T V332I plus 24209100 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 17p13.2 tektin 1 19042 rs2271233 TEKT1 83659 17 6644845 NM_053285 NP_444515 C/T V332I plus 24209100 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 17p13.2 tektin 1 19043 rs2271233 TEKT1 83659 17 6644845 NM_053285 NP_444515 C/T V332I plus 24209100 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq,cluster" 17p13.2 tektin 1 19044 rs2271251 MAP2 4133 2 210343645 NM_002374 NP_002365 C/G A82G minus 3205989 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 2q34-q35 microtubule-associated protein 2 19045 rs2271251 MAP2 4133 2 210343645 NM_031845 NP_114033 C/G A82G minus 3205989 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 2q34-q35 microtubule-associated protein 2 19046 rs2271251 MAP2 4133 2 210343645 NM_031846 NP_114034 C/G A82G minus 3205989 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 2q34-q35 microtubule-associated protein 2 19047 rs2271251 MAP2 4133 2 210343645 NM_031847 NP_114035 C/G A82G minus 3205989 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 2q34-q35 microtubule-associated protein 2 19048 rs2271255 ROCK1 6093 18 16878072 NM_005406 NP_005397 C/T K222E plus 3205993 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q11.2 "Rho-associated, coiled-coil containing protein kinase 1" 19049 rs2271260 ATP8B1 5205 18 53510106 NM_005603 NP_005594 C/T R384H plus 3206001 738 YUSUKE JBIC-ALLELE Japanese (752) 1264 0.01 100 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 19050 rs2271260 ATP8B1 5205 18 53510106 NM_005603 NP_005594 C/T R384H plus 3206001 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 19051 rs2271286 SPTBN5 51332 15 39972774 NM_016642 NP_057726 A/G Q72X plus 3206035 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.05 100 HapMap 15q21 "spectrin, beta, non-erythrocytic 5" 19052 rs2271286 SPTBN5 51332 15 39972774 NM_016642 NP_057726 A/G Q72X plus 3206035 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q21 "spectrin, beta, non-erythrocytic 5" 19053 rs2271291 FHOD1 29109 16 65825650 NM_013241 NP_037373 C/G S486C plus 3206040 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 HapMap 16q22 formin homology 2 domain containing 1 19054 rs2271291 FHOD1 29109 16 65825650 NM_013241 NP_037373 C/G S486C plus 3206040 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16q22 formin homology 2 domain containing 1 19055 rs2271298 EFCBP2 54550 16 82592947 NM_019065 NP_061938 C/G L353V plus 3206048 738 YUSUKE JBIC-ALLELE Japanese (752) 1452 0.48 123 "by doubleHit,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 19056 rs2271298 EFCBP2 54550 16 82592947 NM_019065 NP_061938 C/G L353V plus 23504541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.12 123 "by doubleHit,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 19057 rs2271298 EFCBP2 54550 16 82592947 NM_019065 NP_061938 C/G L353V plus 23504541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 19058 rs2271298 EFCBP2 54550 16 82592947 NM_019065 NP_061938 C/G L353V plus 23504541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 19059 rs2271376 SPATA3 130560 2 231690595 NM_139073 NP_620712 A/G I104T minus 3206150 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.45 100 by freq 2q37.1 spermatogenesis associated 3 19060 rs2271395 N4BP2 55728 4 39961242 NM_018177 NP_060647 C/T T1587A minus 3206172 738 YUSUKE JBIC-ALLELE Japanese (752) 1270 0.46 100 by freq 4p14 Nedd4 binding protein 2 19061 rs2271412 C19orf32 92840 19 1447384 NM_138393 NP_612402 G/T A150D minus 3206199 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 120 "by cluster,freq" 19p13.3 polyposis locus protein 1-like 1 19062 rs2271433 ZFP29 54993 15 82950775 NM_017894 NP_060364 G/T V140F plus 3206226 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 121 "HapMap,doubleHit,submitter,freq,cluster" 15q25.2 zinc finger protein 29 19063 rs2271433 ZFP29 54993 15 82950775 NM_017894 NP_060364 G/T V140F plus 6689596 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 121 "HapMap,doubleHit,submitter,freq,cluster" 15q25.2 zinc finger protein 29 19064 rs2271437 SLC28A2 9153 15 43343412 NM_004212 NP_004203 G/T L163W plus 3206236 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "HapMap,submitter,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 19065 rs2271437 SLC28A2 9153 15 43343412 NM_004212 NP_004203 G/T L163W plus 3206236 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 19066 rs2271437 SLC28A2 9153 15 43343412 NM_004212 NP_004203 G/T L163W plus 24020382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 19067 rs2271437 SLC28A2 9153 15 43343412 NM_004212 NP_004203 G/T L163W plus 24020382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 19068 rs2271437 SLC28A2 9153 15 43343412 NM_004212 NP_004203 G/T L163W plus 24020382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 19069 rs2271458 TRAF5 7188 1 207922451 NM_004619 NP_004610 A/C N186H plus 3206268 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 100 by freq 1q32 TNF receptor-associated factor 5 19070 rs2271458 TRAF5 7188 1 207922451 NM_145759 NP_665702 A/C N186H plus 3206268 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 100 by freq 1q32 TNF receptor-associated factor 5 19071 rs2271460 CUBN 8029 10 17002001 NM_001081 NP_001072 A/C F2263C plus 3206270 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.07 100 "by submitter,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 19072 rs2271462 CUBN 8029 10 17022067 NM_001081 NP_001072 C/T G1840S plus 3206273 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.16 123 "by cluster,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 19073 rs2271462 CUBN 8029 10 17022067 NM_001081 NP_001072 C/T G1840S plus 23891909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 19074 rs2271462 CUBN 8029 10 17022067 NM_001081 NP_001072 C/T G1840S plus 23891909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 19075 rs2271462 CUBN 8029 10 17022067 NM_001081 NP_001072 C/T G1840S plus 23891909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 19076 rs2271488 CMYA1 165904 3 39205934 NM_194293 NP_919269 A/G D3N minus 3206303 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 100 by freq 3p21.33 cardiomyopathy associated 1 19077 rs2271505 NUP210 23225 3 13356739 NM_024923 NP_079199 A/G M1096I minus 3206322 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 100 by freq 3p25.2-p25.1 nucleoporin 210 19078 rs2271589 ART5 116969 11 3617490 NM_053017 NP_443750 A/G Y249H plus 3206435 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.5 ADP-ribosyltransferase 5 19079 rs2271589 ART5 116969 11 3617490 NM_053017 NP_443750 A/G Y249H plus 10681070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.5 ADP-ribosyltransferase 5 19080 rs2271589 ART5 116969 11 3617490 NM_053017 NP_443750 A/G Y249H plus 23537096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.5 ADP-ribosyltransferase 5 19081 rs2271589 ART5 116969 11 3617490 NM_053017 NP_443750 A/G Y249H plus 23537096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.5 ADP-ribosyltransferase 5 19082 rs2271589 ART5 116969 11 3617490 NM_053017 NP_443750 A/G Y249H plus 23537096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.5 ADP-ribosyltransferase 5 19083 rs2271615 SLC6A20 54716 3 45812890 NM_020208 NP_064593 C/G A9G plus 3206470 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.18 120 "HapMap,freq,cluster" 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 19084 rs2271615 SLC6A20 54716 3 45812890 NM_020208 NP_064593 C/G A9G plus 16980360 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.17 120 "HapMap,freq,cluster" 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 19085 rs2271615 SLC6A20 54716 3 45812890 NM_022405 NP_071800 C/G A9G plus 3206470 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.18 120 "HapMap,freq,cluster" 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 19086 rs2271615 SLC6A20 54716 3 45812890 NM_022405 NP_071800 C/G A9G plus 16980360 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.17 120 "HapMap,freq,cluster" 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 19087 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 3206486 738 YUSUKE JBIC-ALLELE Japanese (752) 1064 0.48 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19088 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 11480438 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19089 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 11480438 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19090 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 24295580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19091 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 24295580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19092 rs2271627 CAPG 822 2 85533717 NM_001747 NP_001738 A/G H335R minus 24295580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 2cen-q24 "capping protein (actin filament), gelsolin-like" 19093 rs2271652 CD33 945 19 56430699 NM_001772 NP_001763 A/C V294L minus 3206517 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 100 HapMap 19q13.3 CD33 antigen (gp67) 19094 rs2271652 CD33 945 19 56430699 NM_001772 NP_001763 A/C V294L minus 3206517 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 19q13.3 CD33 antigen (gp67) 19095 rs2271683 COL3A1 1281 2 189699243 NM_000090 NP_000081 A/G I1205V plus 3206557 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.09 123 "HapMap,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 19096 rs2271683 COL3A1 1281 2 189699243 NM_000090 NP_000081 A/G I1205V plus 3206557 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 19097 rs2271683 COL3A1 1281 2 189699243 NM_000090 NP_000081 A/G I1205V plus 16338474 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.02 123 "HapMap,cluster" 2q31 "collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)" 19098 rs2271694 AMID 84883 10 71544790 NM_032797 NP_116186 A/G D288N minus 3206569 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.19 123 "by cluster,freq" 10q22.2 apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death 19099 rs2271694 AMID 84883 10 71544790 NM_032797 NP_116186 A/G D288N minus 24100279 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q22.2 apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death 19100 rs2271694 AMID 84883 10 71544790 NM_032797 NP_116186 A/G D288N minus 24100279 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10q22.2 apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death 19101 rs2271694 AMID 84883 10 71544790 NM_032797 NP_116186 A/G D288N minus 24100279 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 10q22.2 apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death 19102 rs2271703 NGEF 25791 2 233664874 NM_019850 NP_062824 C/T R78G plus 3206585 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.01 100 by freq 2q37 neuronal guanine nucleotide exchange factor 19103 rs2271708 C7 730 5 40972298 NM_000587 NP_000578 A/G C128R minus 3206596 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 5p13 complement component 7 19104 rs2271708 C7 730 5 40972298 NM_000587 NP_000578 A/G C128R minus 23978415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 5p13 complement component 7 19105 rs2271708 C7 730 5 40972298 NM_000587 NP_000578 A/G C128R minus 23978415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5p13 complement component 7 19106 rs2271708 C7 730 5 40972298 NM_000587 NP_000578 A/G C128R minus 23978415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 5p13 complement component 7 19107 rs2271725 ITGA11 22801 15 66396701 NM_012211 NP_036343 A/C Q891K minus 3206621 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.23 123 "by submitter,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 19108 rs2271725 ITGA11 22801 15 66396701 NM_012211 NP_036343 A/C Q891K minus 23411162 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 19109 rs2271725 ITGA11 22801 15 66396701 NM_012211 NP_036343 A/C Q891K minus 23411162 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 19110 rs2271725 ITGA11 22801 15 66396701 NM_012211 NP_036343 A/C Q891K minus 23411162 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by submitter,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 19111 rs2271733 RAX 30062 18 55091287 NM_013435 NP_038463 A/C D44E minus 3206631 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.25 100 "HapMap,freq" 18q21.32 retina and anterior neural fold homeobox 19112 rs2271733 RAX 30062 18 55091287 NM_013435 NP_038463 A/C D44E minus 3206631 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 100 "HapMap,freq" 18q21.32 retina and anterior neural fold homeobox 19113 rs2271761 ZNF533 151126 2 180136950 NM_152520 NP_689733 C/T S166G plus 3206668 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.03 123 "HapMap,freq,cluster" 2q31.3-q32.1 zinc finger protein 533 19114 rs2271761 ZNF533 151126 2 180136950 NM_152520 NP_689733 C/T S166G plus 9982639 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 2q31.3-q32.1 zinc finger protein 533 19115 rs2271761 ZNF533 151126 2 180136950 NM_152520 NP_689733 C/T S166G plus 23706221 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 2q31.3-q32.1 zinc finger protein 533 19116 rs2271761 ZNF533 151126 2 180136950 NM_152520 NP_689733 C/T S166G plus 23706221 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq,cluster" 2q31.3-q32.1 zinc finger protein 533 19117 rs2271761 ZNF533 151126 2 180136950 NM_152520 NP_689733 C/T S166G plus 23706221 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 2q31.3-q32.1 zinc finger protein 533 19118 rs2271777 CCRN4L 25819 4 140322060 NM_012118 NP_036250 A/G H140Y minus 3206685 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.07 100 by freq 4q28.3 CCR4 carbon catabolite repression 4-like (S. cerevisiae) 19119 rs2271796 ZW10 9183 11 113144774 NM_004724 NP_004715 C/T I77M plus 3206707 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.01 123 "HapMap,freq,cluster" 11q23.3 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" 19120 rs2271796 ZW10 9183 11 113144774 NM_004724 NP_004715 C/T I77M plus 3206707 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 11q23.3 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" 19121 rs2271796 ZW10 9183 11 113144774 NM_004724 NP_004715 C/T I77M plus 24103101 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 11q23.3 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" 19122 rs2271796 ZW10 9183 11 113144774 NM_004724 NP_004715 C/T I77M plus 24103101 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 11q23.3 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" 19123 rs2271796 ZW10 9183 11 113144774 NM_004724 NP_004715 C/T I77M plus 24103101 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 11q23.3 "ZW10 homolog, centromere/kinetochore protein (Drosophila)" 19124 rs2271815 DEPC-1 221120 11 43879672 NM_139178 NP_631917 C/T R164C plus 3206735 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 100 HapMap 11p11.2 prostate cancer antigen-1 19125 rs2271815 DEPC-1 221120 11 43879672 NM_139178 NP_631917 C/T R164C plus 3206735 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.01 100 HapMap 11p11.2 prostate cancer antigen-1 19126 rs2271841 ZNF545 284406 19 41590704 NM_133466 NP_597723 C/G E21Q plus 3206765 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.13 zinc finger protein 545 19127 rs2271851 GYLTL1B 120071 11 45906835 NM_152312 NP_689525 C/T R677C plus 3206778 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 11p11.2 glycosyltransferase-like 1B 19128 rs2271851 GYLTL1B 120071 11 45906835 NM_152312 NP_689525 C/T R677C plus 3206778 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p11.2 glycosyltransferase-like 1B 19129 rs2271885 SLC16A4 9122 1 110633757 NM_004696 NP_004687 A/C N264H minus 3206821 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.17 100 "by submitter,freq" 1p13.2 "solute carrier family 16 (monocarboxylic acid transporters), member 4" 19130 rs2271891 PRAC2 360205 17 44157007 XM_498672 XP_498672 C/G T79R minus 21434618 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,submitter,freq,cluster" 17q21.3 prostate/rectrum and colon protein no. 2 19131 rs2271891 PRAC2 360205 17 44157007 XM_498672 XP_498672 C/G T79R minus 23623776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 17q21.3 prostate/rectrum and colon protein no. 2 19132 rs2271891 PRAC2 360205 17 44157007 XM_498672 XP_498672 C/G T79R minus 23623776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 17q21.3 prostate/rectrum and colon protein no. 2 19133 rs2271891 PRAC2 360205 17 44157007 XM_498672 XP_498672 C/G T79R minus 23623776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 17q21.3 prostate/rectrum and colon protein no. 2 19134 rs2271900 DEPDC6 64798 8 121082951 NM_022783 NP_073620 A/G N204S plus 3206836 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 100 "HapMap,freq" 8q24.12 DEP domain containing 6 19135 rs2271904 HSGT1 11319 10 74564381 NM_007265 NP_009196 C/T D634G plus 23970100 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 19136 rs2271904 HSGT1 11319 10 74564381 NM_007265 NP_009196 C/T D634G plus 23970100 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 19137 rs2271904 HSGT1 11319 10 74564381 NM_007265 NP_009196 C/T D634G plus 23970100 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 19138 rs2271933 HCRTR1 3061 1 31761618 NM_001525 NP_001516 C/T I408V minus 3206876 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.22 123 "by submitter,freq,cluster" 1p33 hypocretin (orexin) receptor 1 19139 rs2271933 HCRTR1 3061 1 31761618 NM_001525 NP_001516 C/T I408V minus 24253643 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by submitter,freq,cluster" 1p33 hypocretin (orexin) receptor 1 19140 rs2271933 HCRTR1 3061 1 31761618 NM_001525 NP_001516 C/T I408V minus 24253643 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by submitter,freq,cluster" 1p33 hypocretin (orexin) receptor 1 19141 rs2271933 HCRTR1 3061 1 31761618 NM_001525 NP_001516 C/T I408V minus 24253643 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 1p33 hypocretin (orexin) receptor 1 19142 rs2272011 SCARF1 8578 17 1488940 NM_003693 NP_003684 C/T A425V minus 6611074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,freq,cluster" 17p13.3 "scavenger receptor class F, member 1" 19143 rs2272011 SCARF1 8578 17 1488940 NM_145350 NP_663325 C/T A425V minus 6611074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,freq,cluster" 17p13.3 "scavenger receptor class F, member 1" 19144 rs2272011 SCARF1 8578 17 1488940 NM_145352 NP_663327 C/T A339V minus 6611074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,freq,cluster" 17p13.3 "scavenger receptor class F, member 1" 19145 rs2272070 OTOF 9381 2 26611762 NM_004802 NP_004793 A/G R71W plus 3207063 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 by freq 2p23.1 otoferlin 19146 rs2272070 OTOF 9381 2 26611762 NM_194248 NP_919224 A/G R818W plus 3207063 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 by freq 2p23.1 otoferlin 19147 rs2272070 OTOF 9381 2 26611762 NM_194322 NP_919303 A/G R128W plus 3207063 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 by freq 2p23.1 otoferlin 19148 rs2272070 OTOF 9381 2 26611762 NM_194323 NP_919304 A/G R71W plus 3207063 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 by freq 2p23.1 otoferlin 19149 rs2272094 CRTAM 56253 11 122243471 NM_019604 NP_062550 A/G K321R plus 3207100 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 19150 rs2272094 CRTAM 56253 11 122243471 NM_019604 NP_062550 A/G K321R plus 6827592 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 19151 rs2272094 CRTAM 56253 11 122243471 NM_019604 NP_062550 A/G K321R plus 23682018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 19152 rs2272094 CRTAM 56253 11 122243471 NM_019604 NP_062550 A/G K321R plus 23682018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 19153 rs2272094 CRTAM 56253 11 122243471 NM_019604 NP_062550 A/G K321R plus 23682018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 11q22-q23 class-I MHC-restricted T cell associated molecule 19154 rs2272095 MKRN1 23608 7 139612035 NM_013446 NP_038474 C/G V243L minus 3207102 738 YUSUKE JBIC-ALLELE Japanese (752) 1078 0.16 120 "HapMap,freq,cluster" 7q34 "makorin, ring finger protein, 1" 19155 rs2272095 MKRN1 23608 7 139612035 NM_013446 NP_038474 C/G V243L minus 13434944 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.18 120 "HapMap,freq,cluster" 7q34 "makorin, ring finger protein, 1" 19156 rs2272095 MKRN1 23608 7 139612035 NM_013446 NP_038474 C/G V243L minus 13434944 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,freq,cluster" 7q34 "makorin, ring finger protein, 1" 19157 rs2272199 COL4A4 1286 2 227718225 NM_000092 NP_000083 A/G V1327M minus 23299035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 19158 rs2272199 COL4A4 1286 2 227718225 NM_000092 NP_000083 A/G V1327M minus 23299035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 19159 rs2272199 COL4A4 1286 2 227718225 NM_000092 NP_000083 A/G V1327M minus 23299035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 19160 rs2272296 SOAT2 8435 12 51796200 NM_003578 NP_003569 C/T T254I plus 3207370 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.42 123 "by doubleHit,submitter,freq,cluster" 12q13.13 sterol O-acyltransferase 2 19161 rs2272296 SOAT2 8435 12 51796200 NM_003578 NP_003569 C/T T254I plus 23959293 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.12 123 "by doubleHit,submitter,freq,cluster" 12q13.13 sterol O-acyltransferase 2 19162 rs2272296 SOAT2 8435 12 51796200 NM_003578 NP_003569 C/T T254I plus 23959293 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,submitter,freq,cluster" 12q13.13 sterol O-acyltransferase 2 19163 rs2272296 SOAT2 8435 12 51796200 NM_003578 NP_003569 C/T T254I plus 23959293 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.37 123 "by doubleHit,submitter,freq,cluster" 12q13.13 sterol O-acyltransferase 2 19164 rs2272330 MGAM 8972 7 141180710 NM_004668 NP_004659 G/T Q404H plus 3207415 738 YUSUKE JBIC-ALLELE Japanese (752) 732 0.19 123 "by doubleHit,freq,cluster" 7q34 maltase-glucoamylase (alpha-glucosidase) 19165 rs2272330 MGAM 8972 7 141180710 NM_004668 NP_004659 G/T Q404H plus 24198494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 7q34 maltase-glucoamylase (alpha-glucosidase) 19166 rs2272330 MGAM 8972 7 141180710 NM_004668 NP_004659 G/T Q404H plus 24198494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 7q34 maltase-glucoamylase (alpha-glucosidase) 19167 rs2272330 MGAM 8972 7 141180710 NM_004668 NP_004659 G/T Q404H plus 24198494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 7q34 maltase-glucoamylase (alpha-glucosidase) 19168 rs2272428 CCT4 10575 2 62019117 NM_006430 NP_006421 C/T I112V plus 3207537 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 123 "by submitter,cluster" 2p15 "chaperonin containing TCP1, subunit 4 (delta)" 19169 rs2272428 CCT4 10575 2 62019117 NM_006430 NP_006421 C/T I112V plus 23857564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,cluster" 2p15 "chaperonin containing TCP1, subunit 4 (delta)" 19170 rs2272428 CCT4 10575 2 62019117 NM_006430 NP_006421 C/T I112V plus 23857564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,cluster" 2p15 "chaperonin containing TCP1, subunit 4 (delta)" 19171 rs2272428 CCT4 10575 2 62019117 NM_006430 NP_006421 C/T I112V plus 23857564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,cluster" 2p15 "chaperonin containing TCP1, subunit 4 (delta)" 19172 rs2272487 CHCHD6 84303 3 127934635 NM_032343 NP_115719 A/C A95S minus 3207620 738 YUSUKE JBIC-ALLELE Japanese (752) 1306 0.25 123 "by cluster,freq" 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 19173 rs2272487 CHCHD6 84303 3 127934635 NM_032343 NP_115719 A/C A95S minus 10082666 1303 SEQUENOM CEPH CEPH (92) 46 0.5 123 "by cluster,freq" 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 19174 rs2272487 CHCHD6 84303 3 127934635 NM_032343 NP_115719 A/C A95S minus 24163498 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 19175 rs2272487 CHCHD6 84303 3 127934635 NM_032343 NP_115719 A/C A95S minus 24163498 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 19176 rs2272487 CHCHD6 84303 3 127934635 NM_032343 NP_115719 A/C A95S minus 24163498 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 3q21.3 coiled-coil-helix-coiled-coil-helix domain containing 6 19177 rs2272495 DIP13B 55198 12 104086344 NM_018171 NP_060641 C/T A433V minus 3207632 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 123 "HapMap,doubleHit,freq,cluster" 12q24.1 DIP13 beta 19178 rs2272495 DIP13B 55198 12 104086344 NM_018171 NP_060641 C/T A433V minus 6870521 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 12q24.1 DIP13 beta 19179 rs2272495 DIP13B 55198 12 104086344 NM_018171 NP_060641 C/T A433V minus 23900348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 12q24.1 DIP13 beta 19180 rs2272495 DIP13B 55198 12 104086344 NM_018171 NP_060641 C/T A433V minus 23900348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 12q24.1 DIP13 beta 19181 rs2272495 DIP13B 55198 12 104086344 NM_018171 NP_060641 C/T A433V minus 23900348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 12q24.1 DIP13 beta 19182 rs2272522 CHL1 10752 3 336508 NM_006614 NP_006605 C/T L17F plus 3207661 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.31 121 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 19183 rs2272571 MYO15A 51168 17 17987914 NM_016239 NP_057323 A/G G2018R plus 24125280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq,cluster" 17p11.2 myosin XVA 19184 rs2272571 MYO15A 51168 17 17987914 NM_016239 NP_057323 A/G G2018R plus 24125280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 17p11.2 myosin XVA 19185 rs2272571 MYO15A 51168 17 17987914 NM_016239 NP_057323 A/G G2018R plus 24125280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by submitter,freq,cluster" 17p11.2 myosin XVA 19186 rs2272593 BAT2 7916 6 31709323 NM_004638 NP_004629 A/G L1491P minus 3207765 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 120 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 19187 rs2272593 BAT2 7916 6 31709323 NM_080686 NP_542417 A/G L1503P minus 3207765 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 120 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 19188 rs2272605 ITGAE 3682 17 3603858 NM_002208 NP_002199 A/C A499S plus 3207786 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 19189 rs2272629 PADI3 51702 1 17338622 NM_016233 NP_057317 A/G V171M plus 3207815 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 100 by freq 1p36.13 "peptidyl arginine deiminase, type III" 19190 rs2272641 ENTPD4 9583 8 23350706 NM_004901 NP_004892 A/G K354E minus 3207828 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 123 "by submitter,freq,cluster" 8p21.2 lysosomal apyrase-like 1 19191 rs2272641 ENTPD4 9583 8 23350706 NM_004901 NP_004892 A/G K354E minus 24040489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 8p21.2 lysosomal apyrase-like 1 19192 rs2272641 ENTPD4 9583 8 23350706 NM_004901 NP_004892 A/G K354E minus 24040489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 8p21.2 lysosomal apyrase-like 1 19193 rs2272641 ENTPD4 9583 8 23350706 NM_004901 NP_004892 A/G K354E minus 24040489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by submitter,freq,cluster" 8p21.2 lysosomal apyrase-like 1 19194 rs2272662 SLC39A4 55630 8 145610534 NM_130849 NP_570901 A/G T357A minus 3207854 738 YUSUKE JBIC-ALLELE Japanese (752) 898 0.49 123 "by doubleHit,freq,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 19195 rs2272662 SLC39A4 55630 8 145610534 NM_130849 NP_570901 A/G T357A minus 24511823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 19196 rs2272662 SLC39A4 55630 8 145610534 NM_130849 NP_570901 A/G T357A minus 24511823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 19197 rs2272662 SLC39A4 55630 8 145610534 NM_130849 NP_570901 A/G T357A minus 24511823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 19198 rs2272665 FBXL6 26233 8 145550600 NM_012162 NP_036294 A/C Q436H plus 3207859 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 8q24.3 F-box and leucine-rich repeat protein 6 19199 rs2272665 FBXL6 26233 8 145550600 NM_012162 NP_036294 A/C Q436H plus 3207859 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1476 0 100 HapMap 8q24.3 F-box and leucine-rich repeat protein 6 19200 rs2272665 FBXL6 26233 8 145550600 NM_024555 NP_078831 A/C Q430H plus 3207859 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 8q24.3 F-box and leucine-rich repeat protein 6 19201 rs2272665 FBXL6 26233 8 145550600 NM_024555 NP_078831 A/C Q430H plus 3207859 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1476 0 100 HapMap 8q24.3 F-box and leucine-rich repeat protein 6 19202 rs2272720 MYOM2 9172 8 2008828 NM_003970 NP_003961 G/T V321L plus 11937372 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,submitter,freq,cluster" 8p23.3 "myomesin (M-protein) 2, 165kDa" 19203 rs2272736 IKBKB 3551 8 42296320 NM_001556 NP_001547 A/G R526Q plus 3207942 738 YUSUKE JBIC-ALLELE Japanese (752) 1436 0.1 100 HapMap 8p11.2 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta" 19204 rs2272736 IKBKB 3551 8 42296320 NM_001556 NP_001547 A/G R526Q plus 3207942 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 100 HapMap 8p11.2 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta" 19205 rs2272792 STAF42 117143 1 163561180 NM_053053 NP_444281 C/T R198Q plus 3208010 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "by cluster,freq" 1q23.3 SPT3-associated factor 42 19206 rs2272792 STAF42 117143 1 163561180 NM_053053 NP_444281 C/T R198Q plus 24158164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 1q23.3 SPT3-associated factor 42 19207 rs2272792 STAF42 117143 1 163561180 NM_053053 NP_444281 C/T R198Q plus 24158164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q23.3 SPT3-associated factor 42 19208 rs2272792 STAF42 117143 1 163561180 NM_053053 NP_444281 C/T R198Q plus 24158164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 1q23.3 SPT3-associated factor 42 19209 rs2272829 MIRAB13 85377 22 36648200 NM_033386 NP_203744 C/T P583L plus 3208065 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 22q13.1-q13.2 molecule interacting with Rab13 19210 rs2272829 MIRAB13 85377 22 36648200 NM_033386 NP_203744 C/T P583L plus 23648435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 22q13.1-q13.2 molecule interacting with Rab13 19211 rs2272829 MIRAB13 85377 22 36648200 NM_033386 NP_203744 C/T P583L plus 23648435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by cluster,freq" 22q13.1-q13.2 molecule interacting with Rab13 19212 rs2272829 MIRAB13 85377 22 36648200 NM_033386 NP_203744 C/T P583L plus 23648435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by cluster,freq" 22q13.1-q13.2 molecule interacting with Rab13 19213 rs2272837 MOV10L1 54456 22 48885083 NM_018995 NP_061868 A/G Q820R plus 24214808 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19214 rs2272837 MOV10L1 54456 22 48885083 NM_018995 NP_061868 A/G Q820R plus 24214808 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19215 rs2272837 MOV10L1 54456 22 48885083 NM_018995 NP_061868 A/G Q820R plus 24214808 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19216 rs2272843 MOV10L1 54456 22 48901923 NM_018995 NP_061868 A/C A1179E plus 3208084 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.14 123 "by doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19217 rs2272843 MOV10L1 54456 22 48901923 NM_018995 NP_061868 A/C A1179E plus 24214831 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19218 rs2272843 MOV10L1 54456 22 48901923 NM_018995 NP_061868 A/C A1179E plus 24214831 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19219 rs2272843 MOV10L1 54456 22 48901923 NM_018995 NP_061868 A/C A1179E plus 24214831 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 19220 rs2272846 SELO 83642 22 48942422 NM_031454 NP_113642 A/C T167N plus 3208087 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 116 "by cluster,freq" 22q13.33 selenoprotein O 19221 rs2272852 SELO 83642 22 48958133 NM_031454 NP_113642 A/G E630K plus 3208094 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 100 by freq 22q13.33 selenoprotein O 19222 rs2272859 ADRBK2 157 22 24424095 NM_005160 NP_005151 A/G V409M plus 3208102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 22q12.1 "adrenergic, beta, receptor kinase 2" 19223 rs2272881 BMS1L 9790 10 42607154 NM_014753 NP_055568 C/T R237H minus 3208130 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.07 100 by freq 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 19224 rs2272904 COL11A2 1302 6 33244288 NM_080679 NP_542410 A/C P1209T minus 3208157 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.08 100 by freq 6p21.3 "collagen, type XI, alpha 2" 19225 rs2272904 COL11A2 1302 6 33244288 NM_080680 NP_542411 A/C P1316T minus 3208157 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.08 100 by freq 6p21.3 "collagen, type XI, alpha 2" 19226 rs2272904 COL11A2 1302 6 33244288 NM_080681 NP_542412 A/C P1230T minus 3208157 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.08 100 by freq 6p21.3 "collagen, type XI, alpha 2" 19227 rs2272955 WFDC8 90199 20 43617912 NM_130896 NP_570966 A/G M96T plus 3208228 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.17 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19228 rs2272955 WFDC8 90199 20 43617912 NM_130896 NP_570966 A/G M96T plus 23570694 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19229 rs2272955 WFDC8 90199 20 43617912 NM_130896 NP_570966 A/G M96T plus 23570694 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19230 rs2272955 WFDC8 90199 20 43617912 NM_130896 NP_570966 A/G M96T plus 23570694 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19231 rs2272955 WFDC8 90199 20 43617912 NM_181510 NP_852611 A/G M96T plus 3208228 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.17 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19232 rs2272955 WFDC8 90199 20 43617912 NM_181510 NP_852611 A/G M96T plus 23570694 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19233 rs2272955 WFDC8 90199 20 43617912 NM_181510 NP_852611 A/G M96T plus 23570694 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19234 rs2272955 WFDC8 90199 20 43617912 NM_181510 NP_852611 A/G M96T plus 23570694 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 20q13.12 WAP four-disulfide core domain 8 19235 rs2272962 BCAS4 55653 20 48845105 NM_198799 NP_942094 G/T E26D plus 3208241 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.08 100 by freq 20q13.13 breast carcinoma amplified sequence 4 19236 rs2272996 VNN1 8876 6 133056964 NM_004666 NP_004657 C/T N131S plus 24027495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 1 19237 rs2272996 VNN1 8876 6 133056964 NM_004666 NP_004657 C/T N131S plus 24027495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 1 19238 rs2272996 VNN1 8876 6 133056964 NM_004666 NP_004657 C/T N131S plus 24027495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 1 19239 rs2273058 CRNKL1 51340 20 19981319 NM_016652 NP_057736 A/G F51L plus 3208364 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.42 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 19240 rs2273058 CRNKL1 51340 20 19981319 NM_016652 NP_057736 A/G F51L plus 23561350 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 19241 rs2273058 CRNKL1 51340 20 19981319 NM_016652 NP_057736 A/G F51L plus 23561350 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 19242 rs2273058 CRNKL1 51340 20 19981319 NM_016652 NP_057736 A/G F51L plus 23561350 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 19243 rs2273073 BMP2 650 20 6698882 NM_001200 NP_001191 G/T S37A plus 3208383 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 100 by freq 20p12 bone morphogenetic protein 2 19244 rs2273074 BMP2 650 20 6699089 NM_001200 NP_001191 A/G A106T plus 3208385 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 by freq 20p12 bone morphogenetic protein 2 19245 rs2273075 NTSR1 4923 20 60856677 NM_002531 NP_002522 A/G V304I plus 3208386 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 100 by freq 20q13-20q13 neurotensin receptor 1 (high affinity) 19246 rs2273086 B4GALT5 9334 20 47706581 NM_004776 NP_004767 C/T G61S plus 24206846 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 19247 rs2273086 B4GALT5 9334 20 47706581 NM_004776 NP_004767 C/T G61S plus 24206846 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 19248 rs2273086 B4GALT5 9334 20 47706581 NM_004776 NP_004767 C/T G61S plus 24206846 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 20q13.1-q13.2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5" 19249 rs2273137 NOL5A 10528 20 2583212 NM_006392 NP_006383 C/T I121V minus 3208482 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.22 100 "HapMap,freq" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 19250 rs2273137 NOL5A 10528 20 2583212 NM_006392 NP_006383 C/T I121V minus 3208482 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 100 "HapMap,freq" 20p13 nucleolar protein 5A (56kDa with KKE/D repeat) 19251 rs2273171 STRN3 29966 14 30451102 NM_014574 NP_055389 C/T N387S plus 24083772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by submitter,freq,cluster" 14q13-q21 "striatin, calmodulin binding protein 3" 19252 rs2273171 STRN3 29966 14 30451102 NM_014574 NP_055389 C/T N387S plus 24083772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by submitter,freq,cluster" 14q13-q21 "striatin, calmodulin binding protein 3" 19253 rs2273171 STRN3 29966 14 30451102 NM_014574 NP_055389 C/T N387S plus 24083772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by submitter,freq,cluster" 14q13-q21 "striatin, calmodulin binding protein 3" 19254 rs2273204 PRSS7 5651 21 18620620 NM_002772 NP_002763 A/G E641K minus 3208573 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 100 by freq 21q21.1 "protease, serine, 7 (enterokinase)" 19255 rs2273238 ANKRD6 22881 6 90383081 XM_376519 XP_376519 C/T T233M plus 3208618 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.27 120 "by doubleHit,submitter,freq,cluster" 6q14.2-q16.1 ankyrin repeat domain 6 19256 rs2273285 PLOD 5351 1 11944735 NM_000302 NP_000293 G/T A120S plus 3208685 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 100 by freq 1p36.3-p36.2 "procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)" 19257 rs2273343 MASP2 10747 1 11039811 NM_006610 NP_006601 A/G H155R minus 3208760 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 100 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19258 rs2273343 MASP2 10747 1 11039811 NM_139208 NP_631947 A/G H155R minus 3208760 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 100 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19259 rs2273346 MASP2 10747 1 11025163 NM_006610 NP_006601 C/T V377A minus 3208763 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.19 123 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19260 rs2273346 MASP2 10747 1 11025163 NM_006610 NP_006601 C/T V377A minus 23843489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19261 rs2273346 MASP2 10747 1 11025163 NM_006610 NP_006601 C/T V377A minus 23843489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19262 rs2273346 MASP2 10747 1 11025163 NM_006610 NP_006601 C/T V377A minus 23843489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p36.3-p36.2 mannan-binding lectin serine protease 2 19263 rs2273411 ENPP1 5167 6 132214080 NM_006208 NP_006199 A/G N127S plus 3208856 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 by freq 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 19264 rs2273426 COL19A1 1310 6 70790268 NM_001858 NP_001849 C/G A352G minus 3208880 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.2 119 "by doubleHit,freq,cluster" 6q12-q13 "collagen, type XIX, alpha 1" 19265 rs2273430 NID2 22795 14 51566137 NM_007361 NP_031387 A/C G760V plus 23665972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 19266 rs2273430 NID2 22795 14 51566137 NM_007361 NP_031387 A/C G760V plus 23665972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 19267 rs2273430 NID2 22795 14 51566137 NM_007361 NP_031387 A/C G760V plus 23665972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 19268 rs2273526 SEC23B 10483 20 18471002 NM_006363 NP_006354 C/G H489Q plus 3209021 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19269 rs2273526 SEC23B 10483 20 18471002 NM_006363 NP_006354 C/G H489Q plus 16888594 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.12 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19270 rs2273526 SEC23B 10483 20 18471002 NM_006363 NP_006354 C/G H489Q plus 23645365 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19271 rs2273526 SEC23B 10483 20 18471002 NM_006363 NP_006354 C/G H489Q plus 23645365 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19272 rs2273526 SEC23B 10483 20 18471002 NM_006363 NP_006354 C/G H489Q plus 23645365 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19273 rs2273526 SEC23B 10483 20 18471002 NM_032985 NP_116780 C/G H489Q plus 3209021 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19274 rs2273526 SEC23B 10483 20 18471002 NM_032985 NP_116780 C/G H489Q plus 16888594 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.12 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19275 rs2273526 SEC23B 10483 20 18471002 NM_032985 NP_116780 C/G H489Q plus 23645365 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19276 rs2273526 SEC23B 10483 20 18471002 NM_032985 NP_116780 C/G H489Q plus 23645365 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19277 rs2273526 SEC23B 10483 20 18471002 NM_032985 NP_116780 C/G H489Q plus 23645365 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19278 rs2273526 SEC23B 10483 20 18471002 NM_032986 NP_116781 C/G H489Q plus 3209021 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19279 rs2273526 SEC23B 10483 20 18471002 NM_032986 NP_116781 C/G H489Q plus 16888594 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.12 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19280 rs2273526 SEC23B 10483 20 18471002 NM_032986 NP_116781 C/G H489Q plus 23645365 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19281 rs2273526 SEC23B 10483 20 18471002 NM_032986 NP_116781 C/G H489Q plus 23645365 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19282 rs2273526 SEC23B 10483 20 18471002 NM_032986 NP_116781 C/G H489Q plus 23645365 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 20p11.23 Sec23 homolog B (S. cerevisiae) 19283 rs2273535 STK6 6790 20 54394948 NM_003600 NP_003591 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19284 rs2273535 STK6 6790 20 54394948 NM_003600 NP_003591 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19285 rs2273535 STK6 6790 20 54394948 NM_003600 NP_003591 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19286 rs2273535 STK6 6790 20 54394948 NM_003600 NP_003591 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19287 rs2273535 STK6 6790 20 54394948 NM_003600 NP_003591 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19288 rs2273535 STK6 6790 20 54394948 NM_198433 NP_940835 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19289 rs2273535 STK6 6790 20 54394948 NM_198433 NP_940835 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19290 rs2273535 STK6 6790 20 54394948 NM_198433 NP_940835 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19291 rs2273535 STK6 6790 20 54394948 NM_198433 NP_940835 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19292 rs2273535 STK6 6790 20 54394948 NM_198433 NP_940835 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19293 rs2273535 STK6 6790 20 54394948 NM_198434 NP_940836 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19294 rs2273535 STK6 6790 20 54394948 NM_198434 NP_940836 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19295 rs2273535 STK6 6790 20 54394948 NM_198434 NP_940836 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19296 rs2273535 STK6 6790 20 54394948 NM_198434 NP_940836 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19297 rs2273535 STK6 6790 20 54394948 NM_198434 NP_940836 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19298 rs2273535 STK6 6790 20 54394948 NM_198435 NP_940837 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19299 rs2273535 STK6 6790 20 54394948 NM_198435 NP_940837 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19300 rs2273535 STK6 6790 20 54394948 NM_198435 NP_940837 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19301 rs2273535 STK6 6790 20 54394948 NM_198435 NP_940837 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19302 rs2273535 STK6 6790 20 54394948 NM_198435 NP_940837 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19303 rs2273535 STK6 6790 20 54394948 NM_198436 NP_940838 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19304 rs2273535 STK6 6790 20 54394948 NM_198436 NP_940838 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19305 rs2273535 STK6 6790 20 54394948 NM_198436 NP_940838 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19306 rs2273535 STK6 6790 20 54394948 NM_198436 NP_940838 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19307 rs2273535 STK6 6790 20 54394948 NM_198436 NP_940838 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19308 rs2273535 STK6 6790 20 54394948 NM_198437 NP_940839 A/T F31I plus 8328344 901 AFFY AfAm 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19309 rs2273535 STK6 6790 20 54394948 NM_198437 NP_940839 A/T F31I plus 8328344 902 AFFY Caucasian 22 0.14 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19310 rs2273535 STK6 6790 20 54394948 NM_198437 NP_940839 A/T F31I plus 8328344 903 AFFY Asian 6 0.5 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19311 rs2273535 STK6 6790 20 54394948 NM_198437 NP_940839 A/T F31I plus 8328344 904 AFFY CEPH 10 0.2 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19312 rs2273535 STK6 6790 20 54394948 NM_198437 NP_940839 A/T F31I plus 8328344 905 AFFY PDpanel 44 0.3 120 "by cluster,freq" 20q13.2-q13.3 serine/threonine kinase 6 19313 rs2273566 SMAP1 60682 6 71603423 NM_021940 NP_068759 C/T A185V plus 10319340 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 6q12-q13 stromal membrane-associated protein 1 19314 rs2273566 SMAP1 60682 6 71603423 NM_021940 NP_068759 C/T A185V plus 23366331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 6q12-q13 stromal membrane-associated protein 1 19315 rs2273566 SMAP1 60682 6 71603423 NM_021940 NP_068759 C/T A185V plus 23366331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,doubleHit,freq,cluster" 6q12-q13 stromal membrane-associated protein 1 19316 rs2273566 SMAP1 60682 6 71603423 NM_021940 NP_068759 C/T A185V plus 23366331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 6q12-q13 stromal membrane-associated protein 1 19317 rs2273607 DLK1 8788 14 100268179 NM_003836 NP_003827 A/G V104M plus 3209137 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.07 100 HapMap 14q32 delta-like 1 homolog (Drosophila) 19318 rs2273607 DLK1 8788 14 100268179 NM_003836 NP_003827 A/G V104M plus 3209137 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q32 delta-like 1 homolog (Drosophila) 19319 rs2273621 FHL5 9457 6 97165274 NM_020482 NP_065228 A/G R204G plus 23369274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 19320 rs2273621 FHL5 9457 6 97165274 NM_020482 NP_065228 A/G R204G plus 23369274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 19321 rs2273621 FHL5 9457 6 97165274 NM_020482 NP_065228 A/G R204G plus 23369274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 19322 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.05 123 "HapMap,freq,cluster" 6q21 sestrin 1 19323 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 6q21 sestrin 1 19324 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 901 AFFY AfAm 12 1 123 "HapMap,freq,cluster" 6q21 sestrin 1 19325 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 902 AFFY Caucasian 24 0.21 123 "HapMap,freq,cluster" 6q21 sestrin 1 19326 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 903 AFFY Asian 12 1 123 "HapMap,freq,cluster" 6q21 sestrin 1 19327 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 904 AFFY CEPH 12 0.42 123 "HapMap,freq,cluster" 6q21 sestrin 1 19328 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 3209215 905 AFFY PDpanel 48 0.13 123 "HapMap,freq,cluster" 6q21 sestrin 1 19329 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 24026920 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 6q21 sestrin 1 19330 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 24026920 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 6q21 sestrin 1 19331 rs2273668 SESN1 27244 6 109430212 NM_014454 NP_055269 G/T L103I plus 24026920 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 6q21 sestrin 1 19332 rs2273697 ABCC2 1244 10 101553805 NM_000392 NP_000383 A/G V417I plus 3209257 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.13 123 "by doubleHit,submitter,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 19333 rs2273697 ABCC2 1244 10 101553805 NM_000392 NP_000383 A/G V417I plus 12580178 892 PHARMGKB_PMT PA128307340 494 0.16 123 "by doubleHit,submitter,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 19334 rs2273697 ABCC2 1244 10 101553805 NM_000392 NP_000383 A/G V417I plus 23596946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 19335 rs2273697 ABCC2 1244 10 101553805 NM_000392 NP_000383 A/G V417I plus 23596946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,submitter,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 19336 rs2273697 ABCC2 1244 10 101553805 NM_000392 NP_000383 A/G V417I plus 23596946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 19337 rs2273731 KIR3DL1 3811 19 60023231 NM_013289 NP_037421 C/T P203S plus 3209311 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.13 100 by freq 19q13.4 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1" 19338 rs2273779 PRG4 10216 1 183005651 NM_005807 NP_005798 A/G R180W minus 3209368 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.08 100 by freq 1q25-q31 "proteoglycan 4, (megakaryocyte stimulating factor, articular superficial zone protein, camptodactyly, arthropathy, coxa vara, pericarditis syndrome)" 19339 rs2273821 MRPL18 29074 6 160182047 NM_014161 NP_054880 C/T R6Q minus 23676239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6q25.3 mitochondrial ribosomal protein L18 19340 rs2273821 MRPL18 29074 6 160182047 NM_014161 NP_054880 C/T R6Q minus 23676239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 6q25.3 mitochondrial ribosomal protein L18 19341 rs2273821 MRPL18 29074 6 160182047 NM_014161 NP_054880 C/T R6Q minus 23676239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q25.3 mitochondrial ribosomal protein L18 19342 rs2273837 LRP10 26020 14 22412422 NM_014045 NP_054764 A/G R48W minus 3209441 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.03 100 HapMap 14q11.2 low density lipoprotein receptor-related protein 10 19343 rs2273837 LRP10 26020 14 22412422 NM_014045 NP_054764 A/G R48W minus 3209441 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 14q11.2 low density lipoprotein receptor-related protein 10 19344 rs2273863 LGALS8 3964 1 233032319 NM_006499 NP_006490 G/T D205Y plus 23227546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19345 rs2273863 LGALS8 3964 1 233032319 NM_006499 NP_006490 G/T D205Y plus 23227546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19346 rs2273863 LGALS8 3964 1 233032319 NM_006499 NP_006490 G/T D205Y plus 23227546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19347 rs2273863 LGALS8 3964 1 233032319 NM_201545 NP_963839 G/T D205Y plus 23227546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19348 rs2273863 LGALS8 3964 1 233032319 NM_201545 NP_963839 G/T D205Y plus 23227546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19349 rs2273863 LGALS8 3964 1 233032319 NM_201545 NP_963839 G/T D205Y plus 23227546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by cluster,freq" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 19350 rs2273866 PHYHD1 254295 9 128782445 NM_174933 NP_777593 A/G E193G plus 3209475 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 100 "HapMap,freq" 9q34.13 phytanoyl-CoA dioxygenase domain containing 1 19351 rs2273866 PHYHD1 254295 9 128782445 NM_174933 NP_777593 A/G E193G plus 3209475 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 100 "HapMap,freq" 9q34.13 phytanoyl-CoA dioxygenase domain containing 1 19352 rs2273872 TARBP1 6894 1 230879760 NM_005646 NP_005637 C/T N743S plus 24154419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q42.3 TAR (HIV) RNA binding protein 1 19353 rs2273872 TARBP1 6894 1 230879760 NM_005646 NP_005637 C/T N743S plus 24154419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by submitter,freq,cluster" 1q42.3 TAR (HIV) RNA binding protein 1 19354 rs2273872 TARBP1 6894 1 230879760 NM_005646 NP_005637 C/T N743S plus 24154419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by submitter,freq,cluster" 1q42.3 TAR (HIV) RNA binding protein 1 19355 rs2273903 HNRPH3 3189 10 69768954 NM_012207 NP_036339 A/G N163S plus 3209518 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 by freq 10q22 heterogeneous nuclear ribonucleoprotein H3 (2H9) 19356 rs2273903 HNRPH3 3189 10 69768954 NM_021644 NP_067676 A/G N148S plus 3209518 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 by freq 10q22 heterogeneous nuclear ribonucleoprotein H3 (2H9) 19357 rs2273914 E2F3 1871 6 20598538 NM_001949 NP_001940 C/G E432D minus 3209531 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 6p22 E2F transcription factor 3 19358 rs2273959 SDCBP2 27111 20 1241247 NM_015685 NP_056500 C/T V97M plus 3209597 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.15 121 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 19359 rs2273959 SDCBP2 27111 20 1241247 NM_080489 NP_536737 C/T V97M plus 3209597 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.15 121 "by doubleHit,freq,cluster" 20p13 syndecan binding protein (syntenin) 2 19360 rs2273962 NCR2 9436 6 41426416 NM_004828 NP_004819 A/G M223V plus 23333306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 6p21.1 natural cytotoxicity triggering receptor 2 19361 rs2273962 NCR2 9436 6 41426416 NM_004828 NP_004819 A/G M223V plus 23333306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by cluster,freq" 6p21.1 natural cytotoxicity triggering receptor 2 19362 rs2273962 NCR2 9436 6 41426416 NM_004828 NP_004819 A/G M223V plus 23333306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 6p21.1 natural cytotoxicity triggering receptor 2 19363 rs2273970 GALNT2 2590 1 226721883 NM_004481 NP_004472 C/T V554M minus 3209609 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.3 123 "by cluster,freq" 1q41-q42 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 19364 rs2273970 GALNT2 2590 1 226721883 NM_004481 NP_004472 C/T V554M minus 23883047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q41-q42 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 19365 rs2273970 GALNT2 2590 1 226721883 NM_004481 NP_004472 C/T V554M minus 23883047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q41-q42 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 19366 rs2273970 GALNT2 2590 1 226721883 NM_004481 NP_004472 C/T V554M minus 23883047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 1q41-q42 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) 19367 rs2273986 CLEC2 51266 12 10042241 NM_016509 NP_057593 C/T S24P minus 23786629 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-2 19368 rs2273986 CLEC2 51266 12 10042241 NM_016509 NP_057593 C/T S24P minus 23786629 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-2 19369 rs2273986 CLEC2 51266 12 10042241 NM_016509 NP_057593 C/T S24P minus 23786629 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-2 19370 rs2274064 NCF2 4688 1 180274044 NM_000433 NP_000424 C/T K181R plus 3209723 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.36 123 "by doubleHit,submitter,freq" 1q25 "neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2)" 19371 rs2274064 NCF2 4688 1 180274044 NM_000433 NP_000424 C/T K181R plus 24250853 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq" 1q25 "neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2)" 19372 rs2274064 NCF2 4688 1 180274044 NM_000433 NP_000424 C/T K181R plus 24250853 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq" 1q25 "neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2)" 19373 rs2274064 NCF2 4688 1 180274044 NM_000433 NP_000424 C/T K181R plus 24250853 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq" 1q25 "neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2)" 19374 rs2274068 GARNL1 253959 14 35222928 XM_170749 XP_170749 A/G T1138A minus 3209729 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.36 119 "HapMap,doubleHit,submitter,freq,cluster" 14q13.2 GTPase activating RANGAP domain-like 1 19375 rs2274068 GARNL1 253959 14 35222928 XM_170749 XP_170749 A/G T1138A minus 10731443 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 119 "HapMap,doubleHit,submitter,freq,cluster" 14q13.2 GTPase activating RANGAP domain-like 1 19376 rs2274083 GJB2 2706 13 19661380 NM_004004 NP_003995 C/T E114G plus 3209749 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.18 120 "by cluster,freq" 13q11-q12 "gap junction protein, beta 2, 26kDa (connexin 26)" 19377 rs2274084 GJB2 2706 13 19661642 NM_004004 NP_003995 C/T V27I plus 3209750 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.39 100 by freq 13q11-q12 "gap junction protein, beta 2, 26kDa (connexin 26)" 19378 rs2274217 TXNL2 10539 10 131849140 NM_006541 NP_006532 A/G P123S minus 3209924 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.08 123 "by submitter,freq,cluster" 6p25.3 thioredoxin-like 2 19379 rs2274217 TXNL2 10539 10 131849140 NM_006541 NP_006532 A/G P123S minus 24625026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by submitter,freq,cluster" 6p25.3 thioredoxin-like 2 19380 rs2274217 TXNL2 10539 10 131849140 NM_006541 NP_006532 A/G P123S minus 24625026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 6p25.3 thioredoxin-like 2 19381 rs2274217 TXNL2 10539 10 131849140 NM_006541 NP_006532 A/G P123S minus 24625026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 6p25.3 thioredoxin-like 2 19382 rs2274260 TNNI3K 51086 1 74617226 NM_015978 NP_057062 C/T T637M plus 3209991 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.06 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 19383 rs2274260 TNNI3K 51086 1 74617226 NM_015978 NP_057062 C/T T637M plus 23861815 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 19384 rs2274260 TNNI3K 51086 1 74617226 NM_015978 NP_057062 C/T T637M plus 23861815 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 19385 rs2274260 TNNI3K 51086 1 74617226 NM_015978 NP_057062 C/T T637M plus 23861815 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 19386 rs2274271 DLG7 9787 14 54725445 NM_014750 NP_055565 A/G G69E minus 3210003 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 123 "HapMap,freq,cluster" 14q22.2 "discs, large homolog 7 (Drosophila)" 19387 rs2274271 DLG7 9787 14 54725445 NM_014750 NP_055565 A/G G69E minus 3210003 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,freq,cluster" 14q22.2 "discs, large homolog 7 (Drosophila)" 19388 rs2274271 DLG7 9787 14 54725445 NM_014750 NP_055565 A/G G69E minus 24118910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 14q22.2 "discs, large homolog 7 (Drosophila)" 19389 rs2274271 DLG7 9787 14 54725445 NM_014750 NP_055565 A/G G69E minus 24118910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,freq,cluster" 14q22.2 "discs, large homolog 7 (Drosophila)" 19390 rs2274271 DLG7 9787 14 54725445 NM_014750 NP_055565 A/G G69E minus 24118910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,freq,cluster" 14q22.2 "discs, large homolog 7 (Drosophila)" 19391 rs2274285 COG3 83548 13 45001936 NM_031431 NP_113619 A/G N747S plus 3210018 738 YUSUKE JBIC-ALLELE Japanese (752) 904 0.2 121 "by doubleHit,freq,cluster" 13q14.11 component of oligomeric golgi complex 3 19392 rs2274305 DCDC2 51473 6 24399182 NM_016356 NP_057440 A/G S221G minus 24424822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 6p22.1 doublecortin domain containing 2 19393 rs2274305 DCDC2 51473 6 24399182 NM_016356 NP_057440 A/G S221G minus 24424822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 6p22.1 doublecortin domain containing 2 19394 rs2274305 DCDC2 51473 6 24399182 NM_016356 NP_057440 A/G S221G minus 24424822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 6p22.1 doublecortin domain containing 2 19395 rs2274315 MEF2D 4209 1 153251112 NM_005920 NP_005911 A/G P434S plus 3210054 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0 100 by freq 1q12-q23 "MADS box transcription enhancer factor 2, polypeptide D (myocyte enhancer factor 2D)" 19396 rs2274327 CA6 765 1 8943672 NM_001215 NP_001206 C/T T55M plus 3210072 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 123 by freq 1p36.2 carbonic anhydrase VI 19397 rs2274327 CA6 765 1 8943672 NM_001215 NP_001206 C/T T55M plus 24241367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 1p36.2 carbonic anhydrase VI 19398 rs2274327 CA6 765 1 8943672 NM_001215 NP_001206 C/T T55M plus 24241367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 1p36.2 carbonic anhydrase VI 19399 rs2274327 CA6 765 1 8943672 NM_001215 NP_001206 C/T T55M plus 24241367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 1p36.2 carbonic anhydrase VI 19400 rs2274333 CA6 765 1 8951470 NM_001215 NP_001206 A/G S90G plus 3210078 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.43 123 "by doubleHit,freq,cluster" 1p36.2 carbonic anhydrase VI 19401 rs2274333 CA6 765 1 8951470 NM_001215 NP_001206 A/G S90G plus 23840429 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1p36.2 carbonic anhydrase VI 19402 rs2274333 CA6 765 1 8951470 NM_001215 NP_001206 A/G S90G plus 23840429 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p36.2 carbonic anhydrase VI 19403 rs2274333 CA6 765 1 8951470 NM_001215 NP_001206 A/G S90G plus 23840429 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p36.2 carbonic anhydrase VI 19404 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 8819642 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19405 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 8819642 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19406 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 8819642 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19407 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 8819642 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19408 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 8819642 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19409 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 16339896 1147 PHARMGKB_PMT PA129732580 552 0.16 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19410 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 23810886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19411 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 23810886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19412 rs2274407 ABCC4 10257 13 94657036 NM_005845 NP_005836 A/C K304N plus 23810886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 19413 rs2274419 MUSK 4593 9 110617677 NM_005592 NP_005583 C/T M413I minus 3210188 738 YUSUKE JBIC-ALLELE Japanese (752) 1278 0.23 100 "HapMap,freq" 9q31.3-q32 "muscle, skeletal, receptor tyrosine kinase" 19414 rs2274419 MUSK 4593 9 110617677 NM_005592 NP_005583 C/T M413I minus 3210188 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 100 "HapMap,freq" 9q31.3-q32 "muscle, skeletal, receptor tyrosine kinase" 19415 rs2274496 NTRK1 4914 1 153647271 NM_002529 NP_002520 A/G G89S plus 3210293 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0 100 by freq 1q21-q22 "neurotrophic tyrosine kinase, receptor, type 1" 19416 rs2274516 PEX6 5190 6 43040813 NM_000287 NP_000278 A/G V882I minus 3210321 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 100 by freq 6p21.1 peroxisomal biogenesis factor 6 19417 rs2274531 GPA33 10223 1 163774420 NM_005814 NP_005805 A/G D20N minus 3210344 738 YUSUKE JBIC-ALLELE Japanese (752) 1444 0.14 123 "by submitter,freq,cluster" 1q23.3 glycoprotein A33 (transmembrane) 19418 rs2274531 GPA33 10223 1 163774420 NM_005814 NP_005805 A/G D20N minus 23847640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 1q23.3 glycoprotein A33 (transmembrane) 19419 rs2274531 GPA33 10223 1 163774420 NM_005814 NP_005805 A/G D20N minus 23847640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 1q23.3 glycoprotein A33 (transmembrane) 19420 rs2274531 GPA33 10223 1 163774420 NM_005814 NP_005805 A/G D20N minus 23847640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 1q23.3 glycoprotein A33 (transmembrane) 19421 rs2274540 USP24 23358 1 55274764 XM_371254 XP_371254 A/G G1857S minus 3210355 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 100 by freq 1p32.3 ubiquitin specific protease 24 19422 rs2274567 CR1 1378 1 204142016 NM_000573 NP_000564 A/G H1208R plus 3210395 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.2 121 "by doubleHit,submitter,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 19423 rs2274567 CR1 1378 1 204142016 NM_000573 NP_000564 A/G H1208R plus 5308582 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,submitter,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 19424 rs2274567 CR1 1378 1 204142016 NM_000651 NP_000642 A/G H1658R plus 3210395 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.2 121 "by doubleHit,submitter,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 19425 rs2274567 CR1 1378 1 204142016 NM_000651 NP_000642 A/G H1658R plus 5308582 1303 SEQUENOM CEPH CEPH (92) 92 0.03 121 "by doubleHit,submitter,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 19426 rs2274616 ITGA10 8515 1 143025126 NM_003637 NP_003628 C/T R725Q minus 3210453 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.15 123 "by doubleHit,freq,cluster" 1q21 "integrin, alpha 10" 19427 rs2274616 ITGA10 8515 1 143025126 NM_003637 NP_003628 C/T R725Q minus 23836092 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q21 "integrin, alpha 10" 19428 rs2274616 ITGA10 8515 1 143025126 NM_003637 NP_003628 C/T R725Q minus 23836092 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 1q21 "integrin, alpha 10" 19429 rs2274616 ITGA10 8515 1 143025126 NM_003637 NP_003628 C/T R725Q minus 23836092 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 1q21 "integrin, alpha 10" 19430 rs2274618 ITGA10 8515 1 143024928 NM_003637 NP_003628 C/T R691H minus 3210455 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.04 100 by freq 1q21 "integrin, alpha 10" 19431 rs2274658 MEP1A 4224 6 46909030 NM_005588 NP_005579 G/T V469L plus 3210506 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 121 "by doubleHit,submitter,freq,cluster" 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 19432 rs2274702 LEMD1 93273 1 202085149 XM_371338 XP_371338 G/T W91G minus 3210563 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19433 rs2274702 LEMD1 93273 1 202085149 XM_371338 XP_371338 G/T W91G minus 24160003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19434 rs2274702 LEMD1 93273 1 202085149 XM_371338 XP_371338 G/T W91G minus 24160003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19435 rs2274702 LEMD1 93273 1 202085149 XM_371338 XP_371338 G/T W91G minus 24160003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19436 rs2274703 LEMD1 93273 1 202085125 XM_371338 XP_371338 C/T R99C minus 3210564 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.04 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19437 rs2274703 LEMD1 93273 1 202085125 XM_371338 XP_371338 C/T R99C minus 24160002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19438 rs2274703 LEMD1 93273 1 202085125 XM_371338 XP_371338 C/T R99C minus 24160002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19439 rs2274703 LEMD1 93273 1 202085125 XM_371338 XP_371338 C/T R99C minus 24160002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1q32.1 LEM domain containing 1 19440 rs2274736 PTPN21 11099 14 88008405 NM_007039 NP_008970 C/T V936A minus 3210605 738 YUSUKE JBIC-ALLELE Japanese (752) 708 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 19441 rs2274736 PTPN21 11099 14 88008405 NM_007039 NP_008970 C/T V936A minus 10722750 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 19442 rs2274736 PTPN21 11099 14 88008405 NM_007039 NP_008970 C/T V936A minus 23800588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 19443 rs2274736 PTPN21 11099 14 88008405 NM_007039 NP_008970 C/T V936A minus 23800588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 19444 rs2274736 PTPN21 11099 14 88008405 NM_007039 NP_008970 C/T V936A minus 23800588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 19445 rs2274750 TNC 3371 9 114882825 NM_002160 NP_002151 A/G A1781T minus 3210625 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.11 123 "HapMap,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 19446 rs2274750 TNC 3371 9 114882825 NM_002160 NP_002151 A/G A1781T minus 3210625 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 19447 rs2274750 TNC 3371 9 114882825 NM_002160 NP_002151 A/G A1781T minus 24058009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 19448 rs2274750 TNC 3371 9 114882825 NM_002160 NP_002151 A/G A1781T minus 24058009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 19449 rs2274750 TNC 3371 9 114882825 NM_002160 NP_002151 A/G A1781T minus 24058009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 9q33 tenascin C (hexabrachion) 19450 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 3210635 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19451 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 5112482 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.23 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19452 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 5112482 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.14 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19453 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 23574610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19454 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 23574610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19455 rs2274756 MMP9 4318 20 44076518 NM_004994 NP_004985 A/G R668Q plus 23574610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 19456 rs2274797 USP25 29761 21 16136711 NM_013396 NP_037528 C/T P773L plus 3210693 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 21q11.2 ubiquitin specific protease 25 19457 rs2274802 USP16 10600 21 29330541 NM_006447 NP_006438 A/T Q141H plus 3210699 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.12 120 "by submitter,freq,cluster" 21q22.11 ubiquitin specific protease 16 19458 rs2274802 USP16 10600 21 29330541 NM_006447 NP_006438 A/T Q141H plus 16908412 1303 SEQUENOM CEPH CEPH (92) 92 0.16 120 "by submitter,freq,cluster" 21q22.11 ubiquitin specific protease 16 19459 rs2274827 SLC15A1 6564 13 98154585 NM_005073 NP_005064 A/G R459C plus 3210732 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.03 123 "by cluster,freq" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 19460 rs2274827 SLC15A1 6564 13 98154585 NM_005073 NP_005064 A/G R459C plus 24041677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 19461 rs2274827 SLC15A1 6564 13 98154585 NM_005073 NP_005064 A/G R459C plus 24041677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 19462 rs2274827 SLC15A1 6564 13 98154585 NM_005073 NP_005064 A/G R459C plus 24041677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 19463 rs2274828 SLC15A1 6564 13 98154612 NM_005073 NP_005064 C/T V450I plus 12580391 897 PHARMGKB_PMT PA128183726 494 0.01 117 "by cluster,freq" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 19464 rs2274848 SESN2 83667 1 28284749 NM_031459 NP_113647 C/T T320A minus 3210758 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.1 123 "by cluster,freq" 1p35.2 sestrin 2 19465 rs2274848 SESN2 83667 1 28284749 NM_031459 NP_113647 C/T T320A minus 23836645 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p35.2 sestrin 2 19466 rs2274848 SESN2 83667 1 28284749 NM_031459 NP_113647 C/T T320A minus 23836645 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1p35.2 sestrin 2 19467 rs2274848 SESN2 83667 1 28284749 NM_031459 NP_113647 C/T T320A minus 23836645 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1p35.2 sestrin 2 19468 rs2274866 NFX1 4799 9 33357584 NM_002504 NP_002495 G/T P1086Q minus 3210788 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 100 HapMap 9p13.3 "nuclear transcription factor, X-box binding 1" 19469 rs2274866 NFX1 4799 9 33357584 NM_002504 NP_002495 G/T P1086Q minus 3210788 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9p13.3 "nuclear transcription factor, X-box binding 1" 19470 rs2274870 NIPSNAP3A 25934 9 104594769 NM_015469 NP_056284 A/G R100Q plus 3210792 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.46 121 "HapMap,doubleHit,freq,cluster" 9q31.3 nipsnap homolog 3A (C. elegans) 19471 rs2274870 NIPSNAP3A 25934 9 104594769 NM_015469 NP_056284 A/G R100Q plus 10525068 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 121 "HapMap,doubleHit,freq,cluster" 9q31.3 nipsnap homolog 3A (C. elegans) 19472 rs2274870 NIPSNAP3A 25934 9 104594769 NM_015469 NP_056284 A/G R100Q plus 10525068 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "HapMap,doubleHit,freq,cluster" 9q31.3 nipsnap homolog 3A (C. elegans) 19473 rs2274911 GPRC6A 222545 6 117237397 NM_148963 NP_683766 C/T P91S minus 3210854 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.44 119 "by doubleHit,freq,cluster" 6q22.31 "G protein-coupled receptor, family C, group 6, member A" 19474 rs2274922 TRPM6 140803 9 74620545 NM_017662 NP_060132 C/T N1071D plus 3210871 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 100 HapMap 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19475 rs2274922 TRPM6 140803 9 74620545 NM_017662 NP_060132 C/T N1071D plus 3210871 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19476 rs2274924 TRPM6 140803 9 74606201 NM_017662 NP_060132 A/G K1584E minus 3210873 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19477 rs2274924 TRPM6 140803 9 74606201 NM_017662 NP_060132 A/G K1584E minus 24030235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19478 rs2274924 TRPM6 140803 9 74606201 NM_017662 NP_060132 A/G K1584E minus 24030235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "HapMap,freq,cluster" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19479 rs2274924 TRPM6 140803 9 74606201 NM_017662 NP_060132 A/G K1584E minus 24030235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,freq,cluster" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 19480 rs2274976 MTHFR 4524 1 11785193 NM_005957 NP_005948 A/G R594Q minus 3210933 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.1 123 "by submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 19481 rs2274976 MTHFR 4524 1 11785193 NM_005957 NP_005948 A/G R594Q minus 23838280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 19482 rs2274976 MTHFR 4524 1 11785193 NM_005957 NP_005948 A/G R594Q minus 23838280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 19483 rs2274976 MTHFR 4524 1 11785193 NM_005957 NP_005948 A/G R594Q minus 23838280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "by submitter,freq,cluster" 1p36.3 "5,10-methylenetetrahydrofolate reductase (NADPH)" 19484 rs2275014 SYNE2 23224 14 63745973 NM_015180 NP_055995 A/G A6154V minus 3210982 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19485 rs2275014 SYNE2 23224 14 63745973 NM_015180 NP_055995 A/G A6154V minus 3210982 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19486 rs2275014 SYNE2 23224 14 63745973 NM_182912 NP_878916 A/G A33V minus 3210982 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19487 rs2275014 SYNE2 23224 14 63745973 NM_182912 NP_878916 A/G A33V minus 3210982 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19488 rs2275014 SYNE2 23224 14 63745973 NM_182914 NP_878918 A/G A2540V minus 3210982 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19489 rs2275014 SYNE2 23224 14 63745973 NM_182914 NP_878918 A/G A2540V minus 3210982 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19490 rs2275017 SYNE2 23224 14 63445641 NM_015180 NP_055995 C/T P8S plus 3210988 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.02 123 "HapMap,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19491 rs2275017 SYNE2 23224 14 63445641 NM_015180 NP_055995 C/T P8S plus 3210988 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19492 rs2275017 SYNE2 23224 14 63445641 NM_015180 NP_055995 C/T P8S plus 24129613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19493 rs2275017 SYNE2 23224 14 63445641 NM_015180 NP_055995 C/T P8S plus 24129613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19494 rs2275017 SYNE2 23224 14 63445641 NM_015180 NP_055995 C/T P8S plus 24129613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 19495 rs2275047 AVPI1 60370 10 99429531 NM_021732 NP_068378 C/G A41G plus 3211026 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 123 "by doubleHit,submitter,freq,cluster" 10q24.2 arginine vasopressin-induced 1 19496 rs2275047 AVPI1 60370 10 99429531 NM_021732 NP_068378 C/G A41G plus 16509573 1303 SEQUENOM CEPH CEPH (92) 91 0.34 123 "by doubleHit,submitter,freq,cluster" 10q24.2 arginine vasopressin-induced 1 19497 rs2275047 AVPI1 60370 10 99429531 NM_021732 NP_068378 C/G A41G plus 24091124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 10q24.2 arginine vasopressin-induced 1 19498 rs2275047 AVPI1 60370 10 99429531 NM_021732 NP_068378 C/G A41G plus 24091124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.33 123 "by doubleHit,submitter,freq,cluster" 10q24.2 arginine vasopressin-induced 1 19499 rs2275047 AVPI1 60370 10 99429531 NM_021732 NP_068378 C/G A41G plus 24091124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 10q24.2 arginine vasopressin-induced 1 19500 rs2275060 PALD 27143 10 71959784 XM_166125 XP_166125 C/T S141L plus 3211041 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.3 123 by freq 10q22.2 paladin 19501 rs2275060 PALD 27143 10 71959784 XM_166125 XP_166125 C/T S141L plus 24565593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 by freq 10q22.2 paladin 19502 rs2275060 PALD 27143 10 71959784 XM_166125 XP_166125 C/T S141L plus 24565593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 10q22.2 paladin 19503 rs2275060 PALD 27143 10 71959784 XM_166125 XP_166125 C/T S141L plus 24565593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 by freq 10q22.2 paladin 19504 rs2275140 LAMC3 10319 9 130977603 NM_006059 NP_006050 A/G S1082G plus 3211142 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.31 123 "by doubleHit,submitter,freq,cluster" 9q31-q34 "laminin, gamma 3" 19505 rs2275140 LAMC3 10319 9 130977603 NM_006059 NP_006050 A/G S1082G plus 24093189 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 9q31-q34 "laminin, gamma 3" 19506 rs2275140 LAMC3 10319 9 130977603 NM_006059 NP_006050 A/G S1082G plus 24093189 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 9q31-q34 "laminin, gamma 3" 19507 rs2275140 LAMC3 10319 9 130977603 NM_006059 NP_006050 A/G S1082G plus 24093189 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 9q31-q34 "laminin, gamma 3" 19508 rs2275166 CLCNKB 1188 1 16125549 NM_000085 NP_000076 A/G K578E plus 24236842 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1p36 chloride channel Kb 19509 rs2275166 CLCNKB 1188 1 16125549 NM_000085 NP_000076 A/G K578E plus 24236842 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 1p36 chloride channel Kb 19510 rs2275166 CLCNKB 1188 1 16125549 NM_000085 NP_000076 A/G K578E plus 24236842 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 1p36 chloride channel Kb 19511 rs2275170 TNFRSF8 943 1 12110046 NM_001243 NP_001234 A/G P314S minus 3211177 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1p36 "tumor necrosis factor receptor superfamily, member 8" 19512 rs2275237 ARNT 405 1 147598884 NM_001668 NP_001659 C/T P706L minus 3211269 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 by freq 1q21 aryl hydrocarbon receptor nuclear translocator 19513 rs2275237 ARNT 405 1 147598884 NM_178427 NP_848514 C/T P691L minus 3211269 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 by freq 1q21 aryl hydrocarbon receptor nuclear translocator 19514 rs2275249 CHD1L 9557 1 143984136 NM_004284 NP_004275 C/G S743C plus 3211282 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.25 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 19515 rs2275249 CHD1L 9557 1 143984136 NM_004284 NP_004275 C/G S743C plus 23836488 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 19516 rs2275249 CHD1L 9557 1 143984136 NM_004284 NP_004275 C/G S743C plus 23836488 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 19517 rs2275249 CHD1L 9557 1 143984136 NM_004284 NP_004275 C/G S743C plus 23836488 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 19518 rs2275253 CHIA 27159 1 111573883 NM_021797 NP_068569 A/G I231V plus 3211287 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.47 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19519 rs2275253 CHIA 27159 1 111573883 NM_021797 NP_068569 A/G I231V plus 23875541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19520 rs2275253 CHIA 27159 1 111573883 NM_021797 NP_068569 A/G I231V plus 23875541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19521 rs2275253 CHIA 27159 1 111573883 NM_021797 NP_068569 A/G I231V plus 23875541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19522 rs2275253 CHIA 27159 1 111573883 NM_201653 NP_970615 A/G I231V plus 3211287 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.47 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19523 rs2275253 CHIA 27159 1 111573883 NM_201653 NP_970615 A/G I231V plus 23875541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19524 rs2275253 CHIA 27159 1 111573883 NM_201653 NP_970615 A/G I231V plus 23875541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19525 rs2275253 CHIA 27159 1 111573883 NM_201653 NP_970615 A/G I231V plus 23875541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 1p13.1-p21.3 eosinophil chemotactic cytokine 19526 rs2275254 CHIA 27159 1 111574016 NM_021797 NP_068569 C/T F246S plus 3211288 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.37 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19527 rs2275254 CHIA 27159 1 111574016 NM_021797 NP_068569 C/T F246S plus 24285383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19528 rs2275254 CHIA 27159 1 111574016 NM_021797 NP_068569 C/T F246S plus 24285383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19529 rs2275254 CHIA 27159 1 111574016 NM_021797 NP_068569 C/T F246S plus 24285383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19530 rs2275254 CHIA 27159 1 111574016 NM_201653 NP_970615 C/T F246S plus 3211288 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.37 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19531 rs2275254 CHIA 27159 1 111574016 NM_201653 NP_970615 C/T F246S plus 24285383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19532 rs2275254 CHIA 27159 1 111574016 NM_201653 NP_970615 C/T F246S plus 24285383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19533 rs2275254 CHIA 27159 1 111574016 NM_201653 NP_970615 C/T F246S plus 24285383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 1p13.1-p21.3 eosinophil chemotactic cytokine 19534 rs2275260 GLE1L 2733 9 128365509 NM_001499 NP_001490 A/G I243V plus 3211297 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.48 123 "by doubleHit,freq,cluster" 9q34.13 GLE1 RNA export mediator-like (yeast) 19535 rs2275260 GLE1L 2733 9 128365509 NM_001499 NP_001490 A/G I243V plus 24087790 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 9q34.13 GLE1 RNA export mediator-like (yeast) 19536 rs2275260 GLE1L 2733 9 128365509 NM_001499 NP_001490 A/G I243V plus 24087790 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,freq,cluster" 9q34.13 GLE1 RNA export mediator-like (yeast) 19537 rs2275260 GLE1L 2733 9 128365509 NM_001499 NP_001490 A/G I243V plus 24087790 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 9q34.13 GLE1 RNA export mediator-like (yeast) 19538 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19539 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 901 AFFY AfAm 12 1 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19540 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 902 AFFY Caucasian 24 0.08 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19541 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 903 AFFY Asian 12 0.08 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19542 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 904 AFFY CEPH 12 0.25 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19543 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 3211318 905 AFFY PDpanel 48 0.02 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19544 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 24557807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19545 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 24557807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19546 rs2275272 PYCS 5832 10 97378152 NM_002860 NP_002851 A/G T299I plus 24557807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 10q24.3 pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase) 19547 rs2275289 BVES 11149 6 105680113 NM_007073 NP_009004 A/G R129W plus 3211342 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.03 100 by freq 6q21 blood vessel epicardial substance 19548 rs2275289 BVES 11149 6 105680113 NM_147147 NP_671488 A/G R129W plus 3211342 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.03 100 by freq 6q21 blood vessel epicardial substance 19549 rs2275303 SIPA1L2 57568 1 228845954 NM_020808 NP_065859 C/T G1415S plus 3211359 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.5 123 "by cluster,freq" 1q42.2 signal-induced proliferation-associated 1 like 2 19550 rs2275303 SIPA1L2 57568 1 228845954 NM_020808 NP_065859 C/T G1415S plus 23893176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q42.2 signal-induced proliferation-associated 1 like 2 19551 rs2275303 SIPA1L2 57568 1 228845954 NM_020808 NP_065859 C/T G1415S plus 23893176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q42.2 signal-induced proliferation-associated 1 like 2 19552 rs2275303 SIPA1L2 57568 1 228845954 NM_020808 NP_065859 C/T G1415S plus 23893176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 1q42.2 signal-induced proliferation-associated 1 like 2 19553 rs2275307 SIPA1L2 57568 1 228881656 NM_020808 NP_065859 A/G T1098A minus 3211363 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.48 123 "by doubleHit,submitter,freq,cluster" 1q42.2 signal-induced proliferation-associated 1 like 2 19554 rs2275307 SIPA1L2 57568 1 228881656 NM_020808 NP_065859 A/G T1098A minus 23893630 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 1q42.2 signal-induced proliferation-associated 1 like 2 19555 rs2275307 SIPA1L2 57568 1 228881656 NM_020808 NP_065859 A/G T1098A minus 23893630 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 1q42.2 signal-induced proliferation-associated 1 like 2 19556 rs2275307 SIPA1L2 57568 1 228881656 NM_020808 NP_065859 A/G T1098A minus 23893630 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 1q42.2 signal-induced proliferation-associated 1 like 2 19557 rs2275363 RAP1GA1 5909 1 21685861 NM_002885 NP_002876 A/G A107T minus 3211428 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.44 123 "by doubleHit,freq,cluster" 1p36.1-p35 "RAP1, GTPase activating protein 1" 19558 rs2275363 RAP1GA1 5909 1 21685861 NM_002885 NP_002876 A/G A107T minus 23845014 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by doubleHit,freq,cluster" 1p36.1-p35 "RAP1, GTPase activating protein 1" 19559 rs2275363 RAP1GA1 5909 1 21685861 NM_002885 NP_002876 A/G A107T minus 23845014 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 1p36.1-p35 "RAP1, GTPase activating protein 1" 19560 rs2275363 RAP1GA1 5909 1 21685861 NM_002885 NP_002876 A/G A107T minus 23845014 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 1p36.1-p35 "RAP1, GTPase activating protein 1" 19561 rs2275381 LZTS2 84445 10 102753740 NM_032429 NP_115805 C/T R299W plus 3211452 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 10q24 "leucine zipper, putative tumor suppressor 2" 19562 rs2275408 MRPL37 51253 1 54390326 NM_016491 NP_057575 C/G L322V plus 3211486 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.31 123 "by cluster,freq" 1p32.1 mitochondrial ribosomal protein L37 19563 rs2275408 MRPL37 51253 1 54390326 NM_016491 NP_057575 C/G L322V plus 23840677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 1p32.1 mitochondrial ribosomal protein L37 19564 rs2275408 MRPL37 51253 1 54390326 NM_016491 NP_057575 C/G L322V plus 23840677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 1 123 "by cluster,freq" 1p32.1 mitochondrial ribosomal protein L37 19565 rs2275408 MRPL37 51253 1 54390326 NM_016491 NP_057575 C/G L322V plus 23840677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.15 123 "by cluster,freq" 1p32.1 mitochondrial ribosomal protein L37 19566 rs2275443 IMPK 253430 10 59626047 NM_152230 NP_689416 C/T M349I plus 3211535 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.29 100 "by submitter,freq" 10q21.2-q21.3 inositol polyphosphate multikinase 19567 rs2275445 UCHL5 51377 1 189730179 NM_015984 NP_057068 C/G A144P minus 3211537 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1q32 ubiquitin carboxyl-terminal hydrolase L5 19568 rs2275462 TRIM9 114088 14 50515966 NM_015163 NP_055978 A/C L653F minus 17521948 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,freq,cluster" 14q22.1 tripartite motif-containing 9 19569 rs2275462 TRIM9 114088 14 50515966 NM_015163 NP_055978 A/C L653F minus 24597781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,freq,cluster" 14q22.1 tripartite motif-containing 9 19570 rs2275462 TRIM9 114088 14 50515966 NM_015163 NP_055978 A/C L653F minus 24597781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,freq,cluster" 14q22.1 tripartite motif-containing 9 19571 rs2275462 TRIM9 114088 14 50515966 NM_015163 NP_055978 A/C L653F minus 24597781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 14q22.1 tripartite motif-containing 9 19572 rs2275477 NOR1 127700 1 36555210 NM_145047 NP_659484 C/T G317R plus 23849733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 19573 rs2275477 NOR1 127700 1 36555210 NM_145047 NP_659484 C/T G317R plus 23849733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 19574 rs2275477 NOR1 127700 1 36555210 NM_145047 NP_659484 C/T G317R plus 23849733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 1p34.3 oxidored-nitro domain-containing protein 19575 rs2275481 RAB13 5872 1 150771691 NM_002870 NP_002861 C/T N32S plus 3211588 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.01 123 by freq 1q21.2 "RAB13, member RAS oncogene family" 19576 rs2275554 AK7 122481 14 95940857 NM_152327 NP_689540 A/G R102Q plus 3211679 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.21 120 "HapMap,doubleHit,freq,cluster" 14q32.31 adenylate kinase 7 19577 rs2275554 AK7 122481 14 95940857 NM_152327 NP_689540 A/G R102Q plus 6779500 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 120 "HapMap,doubleHit,freq,cluster" 14q32.31 adenylate kinase 7 19578 rs2275586 MMS19L 64210 10 99230748 NM_022362 NP_071757 C/G A68G plus 3211723 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.07 123 "by doubleHit,submitter,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 19579 rs2275586 MMS19L 64210 10 99230748 NM_022362 NP_071757 C/G A68G plus 23584279 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 19580 rs2275586 MMS19L 64210 10 99230748 NM_022362 NP_071757 C/G A68G plus 23584279 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 19581 rs2275586 MMS19L 64210 10 99230748 NM_022362 NP_071757 C/G A68G plus 23584279 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 19582 rs2275592 ATP5S 27109 14 49857963 NM_015684 NP_056499 C/T P18L plus 3211732 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.41 123 "HapMap,submitter,freq,cluster" 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 19583 rs2275592 ATP5S 27109 14 49857963 NM_015684 NP_056499 C/T P18L plus 10736555 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,submitter,freq,cluster" 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 19584 rs2275592 ATP5S 27109 14 49857963 NM_015684 NP_056499 C/T P18L plus 23640454 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,submitter,freq,cluster" 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 19585 rs2275592 ATP5S 27109 14 49857963 NM_015684 NP_056499 C/T P18L plus 23640454 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 19586 rs2275592 ATP5S 27109 14 49857963 NM_015684 NP_056499 C/T P18L plus 23640454 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 19587 rs2275601 LBR 3930 1 221907044 NM_002296 NP_002287 A/G T311A minus 3211744 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 100 by freq 1q42.1 lamin B receptor 19588 rs2275601 LBR 3930 1 221907044 NM_194442 NP_919424 A/G T311A minus 3211744 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 100 by freq 1q42.1 lamin B receptor 19589 rs2275603 FREB 84824 1 158413438 NM_032738 NP_116127 A/G S186G plus 3211748 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.5 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 19590 rs2275603 FREB 84824 1 158413438 NM_032738 NP_116127 A/G S186G plus 23158520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 19591 rs2275603 FREB 84824 1 158413438 NM_032738 NP_116127 A/G S186G plus 23158520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 19592 rs2275603 FREB 84824 1 158413438 NM_032738 NP_116127 A/G S186G plus 23158520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q23.1 Fc receptor homolog expressed in B cells 19593 rs2275654 TARBP1 6894 1 230836181 NM_005646 NP_005637 A/G I1461V minus 3211818 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 100 by freq 1q42.3 TAR (HIV) RNA binding protein 1 19594 rs2275660 ADPRTL1 143 13 23927218 NM_006437 NP_006428 C/T A899T plus 3211825 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.34 121 "by doubleHit,submitter,freq,cluster" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 19595 rs2275697 CNTN2 6900 1 201759394 NM_005076 NP_005067 C/T A145T minus 3211878 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.5 123 "by doubleHit,freq,cluster" 1q32.1 contactin 2 (axonal) 19596 rs2275697 CNTN2 6900 1 201759394 NM_005076 NP_005067 C/T A145T minus 24159641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 1q32.1 contactin 2 (axonal) 19597 rs2275697 CNTN2 6900 1 201759394 NM_005076 NP_005067 C/T A145T minus 24159641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 1q32.1 contactin 2 (axonal) 19598 rs2275697 CNTN2 6900 1 201759394 NM_005076 NP_005067 C/T A145T minus 24159641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 1q32.1 contactin 2 (axonal) 19599 rs2275720 ADAM8 101 10 134971227 NM_001109 NP_001100 C/T F657L minus 3211904 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 121 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 8 19600 rs2275725 ADAM8 101 10 134977916 NM_001109 NP_001100 A/G W35R plus 3211909 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.09 121 "by cluster,freq" 10q26.3 a disintegrin and metalloproteinase domain 8 19601 rs2275799 NRAP 4892 10 115399830 NM_006175 NP_006166 A/G A282T minus 3212020 738 YUSUKE JBIC-ALLELE Japanese (752) 924 0.17 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19602 rs2275799 NRAP 4892 10 115399830 NM_006175 NP_006166 A/G A282T minus 23637809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19603 rs2275799 NRAP 4892 10 115399830 NM_006175 NP_006166 A/G A282T minus 23637809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19604 rs2275799 NRAP 4892 10 115399830 NM_006175 NP_006166 A/G A282T minus 23637809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19605 rs2275799 NRAP 4892 10 115399830 NM_198060 NP_932326 A/G A282T minus 3212020 738 YUSUKE JBIC-ALLELE Japanese (752) 924 0.17 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19606 rs2275799 NRAP 4892 10 115399830 NM_198060 NP_932326 A/G A282T minus 23637809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19607 rs2275799 NRAP 4892 10 115399830 NM_198060 NP_932326 A/G A282T minus 23637809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19608 rs2275799 NRAP 4892 10 115399830 NM_198060 NP_932326 A/G A282T minus 23637809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 19609 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 3212022 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19610 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 3212022 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19611 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 3212022 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19612 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 3212022 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.07 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19613 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 23783215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19614 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 23783215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19615 rs2275801 PRKCBP1 23613 20 45301259 NM_012408 NP_036540 A/G V772A plus 23783215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19616 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 3212022 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19617 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 3212022 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19618 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 3212022 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19619 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 3212022 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.07 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19620 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 23783215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19621 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 23783215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19622 rs2275801 PRKCBP1 23613 20 45301259 NM_183047 NP_898868 A/G V772A plus 23783215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19623 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 3212022 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.17 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19624 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 3212022 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.42 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19625 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 3212022 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.08 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19626 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 3212022 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.07 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19627 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 23783215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19628 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 23783215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19629 rs2275801 PRKCBP1 23613 20 45301259 NM_183048 NP_898869 A/G V747A plus 23783215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by cluster,freq" 20q13.13 protein kinase C binding protein 1 19630 rs2275848 NINJ1 4814 9 92966875 NM_004148 NP_004139 G/T A110D plus 6540754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 120 "HapMap,doubleHit,freq,cluster" 9q22 ninjurin 1 19631 rs2275848 NINJ1 4814 9 92966875 NM_004148 NP_004139 G/T A110D plus 6540754 1303 SEQUENOM CEPH CEPH (92) 92 0.05 120 "HapMap,doubleHit,freq,cluster" 9q22 ninjurin 1 19632 rs2275857 NTRK2 4915 9 84596527 NM_006180 NP_006171 C/G A457P minus 3212100 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 100 HapMap 9q22.1 "neurotrophic tyrosine kinase, receptor, type 2" 19633 rs2275857 NTRK2 4915 9 84596527 NM_006180 NP_006171 C/G A457P minus 3212100 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 100 HapMap 9q22.1 "neurotrophic tyrosine kinase, receptor, type 2" 19634 rs2275857 NTRK2 4915 9 84596527 NM_006180 NP_006171 C/G A457P minus 3212100 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 100 HapMap 9q22.1 "neurotrophic tyrosine kinase, receptor, type 2" 19635 rs2275857 NTRK2 4915 9 84596527 NM_006180 NP_006171 C/G A457P minus 3212100 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q22.1 "neurotrophic tyrosine kinase, receptor, type 2" 19636 rs2275866 LAD1 3898 1 198083078 NM_005558 NP_005549 A/T T503S minus 3212109 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.07 100 by freq 1q25.1-q32.3 ladinin 1 19637 rs2275902 ELTD1 64123 1 79069381 XM_371262 XP_371262 C/G A761G plus 3212153 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.25 123 "by doubleHit,submitter,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 19638 rs2275902 ELTD1 64123 1 79069381 XM_371262 XP_371262 C/G A761G plus 24243584 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 19639 rs2275902 ELTD1 64123 1 79069381 XM_371262 XP_371262 C/G A761G plus 24243584 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 19640 rs2275902 ELTD1 64123 1 79069381 XM_371262 XP_371262 C/G A761G plus 24243584 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 19641 rs2275950 RNF28 84676 1 26069145 NM_032588 NP_115977 A/G K237E minus 3212208 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.14 121 "by doubleHit,freq,cluster" 1p34-p33 ring finger protein 28 19642 rs2275984 GGTLA1 2687 22 22947202 NM_004121 NP_004112 C/T K330R plus 3212260 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.2 121 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 19643 rs2275984 GGTLA1 2687 22 22947202 NM_004121 NP_004112 C/T K330R plus 12526265 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 19644 rs2275992 ZFP91 80829 11 58135000 NM_053023 NP_444251 A/G S207G plus 3212270 738 YUSUKE JBIC-ALLELE Japanese (752) 1452 0.19 123 "by doubleHit,freq,cluster" 11q12 zinc finger protein 91 homolog (mouse) 19645 rs2275992 ZFP91 80829 11 58135000 NM_053023 NP_444251 A/G S207G plus 16126805 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 11q12 zinc finger protein 91 homolog (mouse) 19646 rs2275992 ZFP91 80829 11 58135000 NM_053023 NP_444251 A/G S207G plus 24560494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 11q12 zinc finger protein 91 homolog (mouse) 19647 rs2275992 ZFP91 80829 11 58135000 NM_053023 NP_444251 A/G S207G plus 24560494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11q12 zinc finger protein 91 homolog (mouse) 19648 rs2275992 ZFP91 80829 11 58135000 NM_053023 NP_444251 A/G S207G plus 24560494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 11q12 zinc finger protein 91 homolog (mouse) 19649 rs2275992 ZFP91-CNTF 386607 11 58135000 NM_170768 NP_739574 A/G S207G plus 3212270 738 YUSUKE JBIC-ALLELE Japanese (752) 1452 0.19 123 "by doubleHit,freq,cluster" 11q12.2 "zinc finger protein 91 homolog (mouse), ciliary neurotrophic factor transcription unit" 19650 rs2275992 ZFP91-CNTF 386607 11 58135000 NM_170768 NP_739574 A/G S207G plus 16126805 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 11q12.2 "zinc finger protein 91 homolog (mouse), ciliary neurotrophic factor transcription unit" 19651 rs2275992 ZFP91-CNTF 386607 11 58135000 NM_170768 NP_739574 A/G S207G plus 24560494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 11q12.2 "zinc finger protein 91 homolog (mouse), ciliary neurotrophic factor transcription unit" 19652 rs2275992 ZFP91-CNTF 386607 11 58135000 NM_170768 NP_739574 A/G S207G plus 24560494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11q12.2 "zinc finger protein 91 homolog (mouse), ciliary neurotrophic factor transcription unit" 19653 rs2275992 ZFP91-CNTF 386607 11 58135000 NM_170768 NP_739574 A/G S207G plus 24560494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 11q12.2 "zinc finger protein 91 homolog (mouse), ciliary neurotrophic factor transcription unit" 19654 rs2275996 IGHMBP2 3508 11 68462396 NM_002180 NP_002171 A/G E928K plus 3212280 738 YUSUKE JBIC-ALLELE Japanese (752) 1086 0.08 123 "HapMap,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 19655 rs2275996 IGHMBP2 3508 11 68462396 NM_002180 NP_002171 A/G E928K plus 3212280 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 19656 rs2275996 IGHMBP2 3508 11 68462396 NM_002180 NP_002171 A/G E928K plus 24102785 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 19657 rs2275996 IGHMBP2 3508 11 68462396 NM_002180 NP_002171 A/G E928K plus 24102785 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 19658 rs2275996 IGHMBP2 3508 11 68462396 NM_002180 NP_002171 A/G E928K plus 24102785 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 19659 rs2276036 KLC2 64837 11 65790006 NM_022822 NP_073733 C/T P517S plus 3212350 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.25 120 "by doubleHit,freq,cluster" 11q13.1 likely ortholog of kinesin light chain 2 19660 rs2276038 P2RX3 5024 11 56894000 NM_002559 NP_002550 A/G A383V minus 3212352 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by submitter,freq,cluster" 11q12 "purinergic receptor P2X, ligand-gated ion channel, 3" 19661 rs2276038 P2RX3 5024 11 56894000 NM_002559 NP_002550 A/G A383V minus 24574003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by submitter,freq,cluster" 11q12 "purinergic receptor P2X, ligand-gated ion channel, 3" 19662 rs2276038 P2RX3 5024 11 56894000 NM_002559 NP_002550 A/G A383V minus 24574003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 11q12 "purinergic receptor P2X, ligand-gated ion channel, 3" 19663 rs2276038 P2RX3 5024 11 56894000 NM_002559 NP_002550 A/G A383V minus 24574003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by submitter,freq,cluster" 11q12 "purinergic receptor P2X, ligand-gated ion channel, 3" 19664 rs2276053 LOH11CR2A 4013 11 123512203 NM_014622 NP_055437 C/T R506K minus 3212368 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.05 100 by freq 11q23 "loss of heterozygosity, 11, chromosomal region 2, gene A" 19665 rs2276054 LOH11CR2A 4013 11 123512182 NM_014622 NP_055437 A/C S499I minus 3212369 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.05 100 "HapMap,freq" 11q23 "loss of heterozygosity, 11, chromosomal region 2, gene A" 19666 rs2276054 LOH11CR2A 4013 11 123512182 NM_014622 NP_055437 A/C S499I minus 3212369 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 100 "HapMap,freq" 11q23 "loss of heterozygosity, 11, chromosomal region 2, gene A" 19667 rs2276093 MMP13 4322 11 102331622 NM_002427 NP_002418 C/T A8V minus 3212426 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.02 123 HapMap 11q22.3 matrix metalloproteinase 13 (collagenase 3) 19668 rs2276093 MMP13 4322 11 102331622 NM_002427 NP_002418 C/T A8V minus 3212426 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 11q22.3 matrix metalloproteinase 13 (collagenase 3) 19669 rs2276113 BIRC3 330 11 101701229 NM_001165 NP_001156 A/G K260R plus 3212452 738 YUSUKE JBIC-ALLELE Japanese (752) 1258 0.04 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19670 rs2276113 BIRC3 330 11 101701229 NM_001165 NP_001156 A/G K260R plus 3212452 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19671 rs2276113 BIRC3 330 11 101701229 NM_001165 NP_001156 A/G K260R plus 24122333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19672 rs2276113 BIRC3 330 11 101701229 NM_001165 NP_001156 A/G K260R plus 24122333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19673 rs2276113 BIRC3 330 11 101701229 NM_001165 NP_001156 A/G K260R plus 24122333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19674 rs2276113 BIRC3 330 11 101701229 NM_182962 NP_892007 A/G K260R plus 3212452 738 YUSUKE JBIC-ALLELE Japanese (752) 1258 0.04 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19675 rs2276113 BIRC3 330 11 101701229 NM_182962 NP_892007 A/G K260R plus 3212452 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19676 rs2276113 BIRC3 330 11 101701229 NM_182962 NP_892007 A/G K260R plus 24122333 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19677 rs2276113 BIRC3 330 11 101701229 NM_182962 NP_892007 A/G K260R plus 24122333 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19678 rs2276113 BIRC3 330 11 101701229 NM_182962 NP_892007 A/G K260R plus 24122333 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 11q22 baculoviral IAP repeat-containing 3 19679 rs2276118 CABP2 51475 11 67045170 NM_016366 NP_057450 A/G R94Q minus 3212459 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.36 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19680 rs2276118 CABP2 51475 11 67045170 NM_016366 NP_057450 A/G R94Q minus 24659483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19681 rs2276118 CABP2 51475 11 67045170 NM_016366 NP_057450 A/G R94Q minus 24659483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19682 rs2276118 CABP2 51475 11 67045170 NM_016366 NP_057450 A/G R94Q minus 24659483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19683 rs2276118 CABP2 51475 11 67045170 NM_031204 NP_112481 A/G R37Q minus 3212459 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.36 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19684 rs2276118 CABP2 51475 11 67045170 NM_031204 NP_112481 A/G R37Q minus 24659483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19685 rs2276118 CABP2 51475 11 67045170 NM_031204 NP_112481 A/G R37Q minus 24659483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19686 rs2276118 CABP2 51475 11 67045170 NM_031204 NP_112481 A/G R37Q minus 24659483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by doubleHit,freq,cluster" 11q13.1 calcium binding protein 2 19687 rs2276211 ZNF236 7776 18 72709768 NM_007345 NP_031371 A/G S166L minus 3212601 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.04 100 "HapMap,freq" 18q22-q23 zinc finger protein 236 19688 rs2276211 ZNF236 7776 18 72709768 NM_007345 NP_031371 A/G S166L minus 3212601 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 100 "HapMap,freq" 18q22-q23 zinc finger protein 236 19689 rs2276231 DSCR5 51227 21 37359821 NM_016430 NP_057514 G/T R86S plus 3212644 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.04 123 HapMap 21q22.2 Down syndrome critical region gene 5 19690 rs2276231 DSCR5 51227 21 37359821 NM_016430 NP_057514 G/T R86S plus 3212644 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19691 rs2276231 DSCR5 51227 21 37359821 NM_016430 NP_057514 G/T R86S plus 24219708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19692 rs2276231 DSCR5 51227 21 37359821 NM_016430 NP_057514 G/T R86S plus 24219708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19693 rs2276231 DSCR5 51227 21 37359821 NM_016430 NP_057514 G/T R86S plus 24219708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 21q22.2 Down syndrome critical region gene 5 19694 rs2276231 DSCR5 51227 21 37359821 NM_153681 NP_710148 G/T R136S plus 3212644 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.04 123 HapMap 21q22.2 Down syndrome critical region gene 5 19695 rs2276231 DSCR5 51227 21 37359821 NM_153681 NP_710148 G/T R136S plus 3212644 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19696 rs2276231 DSCR5 51227 21 37359821 NM_153681 NP_710148 G/T R136S plus 24219708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19697 rs2276231 DSCR5 51227 21 37359821 NM_153681 NP_710148 G/T R136S plus 24219708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19698 rs2276231 DSCR5 51227 21 37359821 NM_153681 NP_710148 G/T R136S plus 24219708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 21q22.2 Down syndrome critical region gene 5 19699 rs2276231 DSCR5 51227 21 37359821 NM_153682 NP_710149 G/T R112S plus 3212644 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.04 123 HapMap 21q22.2 Down syndrome critical region gene 5 19700 rs2276231 DSCR5 51227 21 37359821 NM_153682 NP_710149 G/T R112S plus 3212644 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19701 rs2276231 DSCR5 51227 21 37359821 NM_153682 NP_710149 G/T R112S plus 24219708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19702 rs2276231 DSCR5 51227 21 37359821 NM_153682 NP_710149 G/T R112S plus 24219708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 HapMap 21q22.2 Down syndrome critical region gene 5 19703 rs2276231 DSCR5 51227 21 37359821 NM_153682 NP_710149 G/T R112S plus 24219708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 21q22.2 Down syndrome critical region gene 5 19704 rs2276288 MYO7A 4647 11 76590284 NM_000260 NP_000251 A/T S1666C plus 3212732 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.43 121 "by doubleHit,freq,cluster" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 19705 rs2276295 GANAB 23193 11 62158911 NM_014610 NP_055425 C/T R173Q plus 3212740 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19706 rs2276295 GANAB 23193 11 62158911 NM_014610 NP_055425 C/T R173Q plus 3212740 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19707 rs2276295 GANAB 23193 11 62158911 NM_198334 NP_938148 C/T R173Q plus 3212740 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19708 rs2276295 GANAB 23193 11 62158911 NM_198334 NP_938148 C/T R173Q plus 3212740 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19709 rs2276295 GANAB 23193 11 62158911 NM_198335 NP_938149 C/T R173Q plus 3212740 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19710 rs2276295 GANAB 23193 11 62158911 NM_198335 NP_938149 C/T R173Q plus 3212740 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q12.3 "glucosidase, alpha; neutral AB" 19711 rs2276331 CDH1 999 16 67413581 NM_004360 NP_004351 C/G L630V minus 3212800 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 HapMap 16q22.1 "cadherin 1, type 1, E-cadherin (epithelial)" 19712 rs2276331 CDH1 999 16 67413581 NM_004360 NP_004351 C/G L630V minus 3212800 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 16q22.1 "cadherin 1, type 1, E-cadherin (epithelial)" 19713 rs2276348 ASAM 79827 11 122460612 NM_024769 NP_079045 C/T R69H plus 3212822 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.16 123 "by cluster,freq" 11q24.1 adipocyte-specific adhesion molecule 19714 rs2276348 ASAM 79827 11 122460612 NM_024769 NP_079045 C/T R69H plus 23914150 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q24.1 adipocyte-specific adhesion molecule 19715 rs2276348 ASAM 79827 11 122460612 NM_024769 NP_079045 C/T R69H plus 23914150 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by cluster,freq" 11q24.1 adipocyte-specific adhesion molecule 19716 rs2276348 ASAM 79827 11 122460612 NM_024769 NP_079045 C/T R69H plus 23914150 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by cluster,freq" 11q24.1 adipocyte-specific adhesion molecule 19717 rs2276360 NADSYN1 55191 11 70847195 NM_018161 NP_060631 C/G V74L plus 3212836 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.32 123 "HapMap,doubleHit,freq,cluster" 11q13.2 NAD synthetase 1 19718 rs2276360 NADSYN1 55191 11 70847195 NM_018161 NP_060631 C/G V74L plus 12160450 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,doubleHit,freq,cluster" 11q13.2 NAD synthetase 1 19719 rs2276360 NADSYN1 55191 11 70847195 NM_018161 NP_060631 C/G V74L plus 24176611 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 11q13.2 NAD synthetase 1 19720 rs2276360 NADSYN1 55191 11 70847195 NM_018161 NP_060631 C/G V74L plus 24176611 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.4 123 "HapMap,doubleHit,freq,cluster" 11q13.2 NAD synthetase 1 19721 rs2276360 NADSYN1 55191 11 70847195 NM_018161 NP_060631 C/G V74L plus 24176611 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q13.2 NAD synthetase 1 19722 rs2276403 MNDA 4332 1 155630672 NM_002432 NP_002423 C/T H357Y plus 3212900 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.06 123 "by cluster,freq" 1q22 myeloid cell nuclear differentiation antigen 19723 rs2276403 MNDA 4332 1 155630672 NM_002432 NP_002423 C/T H357Y plus 23874938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22 myeloid cell nuclear differentiation antigen 19724 rs2276403 MNDA 4332 1 155630672 NM_002432 NP_002423 C/T H357Y plus 23874938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q22 myeloid cell nuclear differentiation antigen 19725 rs2276403 MNDA 4332 1 155630672 NM_002432 NP_002423 C/T H357Y plus 23874938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q22 myeloid cell nuclear differentiation antigen 19726 rs2276405 AIM2 9447 1 155856269 NM_004833 NP_004824 C/T E32K plus 3212905 738 YUSUKE JBIC-ALLELE Japanese (752) 1082 0.06 123 "by cluster,freq" 1q22 absent in melanoma 2 19727 rs2276405 AIM2 9447 1 155856269 NM_004833 NP_004824 C/T E32K plus 23876276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22 absent in melanoma 2 19728 rs2276405 AIM2 9447 1 155856269 NM_004833 NP_004824 C/T E32K plus 23876276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q22 absent in melanoma 2 19729 rs2276405 AIM2 9447 1 155856269 NM_004833 NP_004824 C/T E32K plus 23876276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by cluster,freq" 1q22 absent in melanoma 2 19730 rs2276415 AQP11 282679 11 76978989 NM_173039 NP_766627 A/G G102S plus 3212919 738 YUSUKE JBIC-ALLELE Japanese (752) 1118 0.2 120 "HapMap,freq,cluster" 11q13.4 aquaporin 11 19731 rs2276415 AQP11 282679 11 76978989 NM_173039 NP_766627 A/G G102S plus 19211256 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 120 "HapMap,freq,cluster" 11q13.4 aquaporin 11 19732 rs2276427 SCGB1D2 10647 11 61767520 NM_006551 NP_006542 C/T V80A plus 3212932 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 by freq 11q13 "secretoglobin, family 1D, member 2" 19733 rs2276568 CAPN13 92291 2 30868977 NM_144575 NP_653176 A/G I596T plus 3213130 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 100 by freq 2p22-p21 calpain 13 19734 rs2276650 STARD7 56910 2 96283033 NM_020151 NP_064536 C/G R65P minus 3213238 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.11 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19735 rs2276650 STARD7 56910 2 96283033 NM_020151 NP_064536 C/G R65P minus 3213238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19736 rs2276650 STARD7 56910 2 96283033 NM_020151 NP_064536 C/G R65P minus 24349797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19737 rs2276650 STARD7 56910 2 96283033 NM_020151 NP_064536 C/G R65P minus 24349797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19738 rs2276650 STARD7 56910 2 96283033 NM_020151 NP_064536 C/G R65P minus 24349797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19739 rs2276650 STARD7 56910 2 96283033 NM_139267 NP_644672 C/G R65P minus 3213238 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.11 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19740 rs2276650 STARD7 56910 2 96283033 NM_139267 NP_644672 C/G R65P minus 3213238 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19741 rs2276650 STARD7 56910 2 96283033 NM_139267 NP_644672 C/G R65P minus 24349797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19742 rs2276650 STARD7 56910 2 96283033 NM_139267 NP_644672 C/G R65P minus 24349797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19743 rs2276650 STARD7 56910 2 96283033 NM_139267 NP_644672 C/G R65P minus 24349797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 2q11.2 START domain containing 7 19744 rs2276724 FTHFD 10840 3 127337107 NM_012190 NP_036322 A/G S481G minus 24365154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19745 rs2276724 FTHFD 10840 3 127337107 NM_012190 NP_036322 A/G S481G minus 24365154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19746 rs2276724 FTHFD 10840 3 127337107 NM_012190 NP_036322 A/G S481G minus 24365154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19747 rs2276724 FTHFD 10840 3 127337107 NM_144776 NP_658989 A/G S481G minus 24365154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19748 rs2276724 FTHFD 10840 3 127337107 NM_144776 NP_658989 A/G S481G minus 24365154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19749 rs2276724 FTHFD 10840 3 127337107 NM_144776 NP_658989 A/G S481G minus 24365154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 19750 rs2276742 FLNB 2317 3 58082196 NM_001457 NP_001448 C/T V1018M minus 3213359 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "HapMap,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 19751 rs2276742 FLNB 2317 3 58082196 NM_001457 NP_001448 C/T V1018M minus 3213359 885 TSC-CSHL HapMap-CEPH-30-trios 104 1 123 "HapMap,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 19752 rs2276742 FLNB 2317 3 58082196 NM_001457 NP_001448 C/T V1018M minus 23748116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 19753 rs2276742 FLNB 2317 3 58082196 NM_001457 NP_001448 C/T V1018M minus 23748116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 19754 rs2276742 FLNB 2317 3 58082196 NM_001457 NP_001448 C/T V1018M minus 23748116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 3p14.3 "filamin B, beta (actin binding protein 278)" 19755 rs2276749 VGLL4 9686 3 11618465 NM_014667 NP_055482 C/T I32M plus 3213369 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.11 121 "HapMap,freq,cluster" 3p25.2 vestigial like 4 (Drosophila) 19756 rs2276749 VGLL4 9686 3 11618465 NM_014667 NP_055482 C/T I32M plus 14185674 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.05 121 "HapMap,freq,cluster" 3p25.2 vestigial like 4 (Drosophila) 19757 rs2276774 SEMA5B 54437 3 124129518 NM_018987 NP_061860 C/T I220T minus 3213400 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.04 123 "by submitter,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 19758 rs2276774 SEMA5B 54437 3 124129518 NM_018987 NP_061860 C/T I220T minus 23268530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 19759 rs2276774 SEMA5B 54437 3 124129518 NM_018987 NP_061860 C/T I220T minus 23268530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 19760 rs2276774 SEMA5B 54437 3 124129518 NM_018987 NP_061860 C/T I220T minus 23268530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 19761 rs2276781 SEMA5B 54437 3 124115126 NM_018987 NP_061860 C/T M742T minus 3213407 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 19762 rs2276790 MFI2 4241 3 198232304 NM_005929 NP_005920 C/T R294W minus 3213417 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.05 100 by freq 3q28-q29 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 19763 rs2276812 AD-017 55830 3 52705000 NM_018446 NP_060916 C/T R210H plus 3213440 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.05 123 by freq 3p21.31 glycosyltransferase AD-017 19764 rs2276812 AD-017 55830 3 52705000 NM_018446 NP_060916 C/T R210H plus 24184874 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 3p21.31 glycosyltransferase AD-017 19765 rs2276812 AD-017 55830 3 52705000 NM_018446 NP_060916 C/T R210H plus 24184874 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 3p21.31 glycosyltransferase AD-017 19766 rs2276812 AD-017 55830 3 52705000 NM_018446 NP_060916 C/T R210H plus 24184874 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 by freq 3p21.31 glycosyltransferase AD-017 19767 rs2276812 AD-017 55830 3 52705000 NM_152932 NP_690909 C/T R210H plus 3213440 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.05 123 by freq 3p21.31 glycosyltransferase AD-017 19768 rs2276812 AD-017 55830 3 52705000 NM_152932 NP_690909 C/T R210H plus 24184874 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 3p21.31 glycosyltransferase AD-017 19769 rs2276812 AD-017 55830 3 52705000 NM_152932 NP_690909 C/T R210H plus 24184874 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 3p21.31 glycosyltransferase AD-017 19770 rs2276812 AD-017 55830 3 52705000 NM_152932 NP_690909 C/T R210H plus 24184874 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 by freq 3p21.31 glycosyltransferase AD-017 19771 rs2276814 ITIH4 3700 3 52828520 NM_002218 NP_002209 A/T Q669L plus 3213446 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 19772 rs2276814 ITIH4 3700 3 52828520 NM_002218 NP_002209 A/T Q669L plus 23310746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 19773 rs2276814 ITIH4 3700 3 52828520 NM_002218 NP_002209 A/T Q669L plus 23310746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 19774 rs2276814 ITIH4 3700 3 52828520 NM_002218 NP_002209 A/T Q669L plus 23310746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 19775 rs2276853 KIF9 64147 3 47257307 NM_022342 NP_071737 C/T R573W minus 3213498 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 121 "by doubleHit,freq,cluster" 3p21.31 kinesin family member 9 19776 rs2276853 KIF9 64147 3 47257307 NM_182902 NP_878905 C/T R638W minus 3213498 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 121 "by doubleHit,freq,cluster" 3p21.31 kinesin family member 9 19777 rs2276853 KIF9 64147 3 47257307 NM_182903 NP_878906 C/T R638W minus 3213498 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 121 "by doubleHit,freq,cluster" 3p21.31 kinesin family member 9 19778 rs2276872 CD96 10225 3 112769065 NM_005816 NP_005807 C/G A142P minus 3213525 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.15 123 "HapMap,freq" 3q13.13 CD96 antigen 19779 rs2276872 CD96 10225 3 112769065 NM_005816 NP_005807 C/G A142P minus 3213525 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,freq" 3q13.13 CD96 antigen 19780 rs2276872 CD96 10225 3 112769065 NM_005816 NP_005807 C/G A142P minus 24144137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq" 3q13.13 CD96 antigen 19781 rs2276872 CD96 10225 3 112769065 NM_005816 NP_005807 C/G A142P minus 24144137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,freq" 3q13.13 CD96 antigen 19782 rs2276872 CD96 10225 3 112769065 NM_005816 NP_005807 C/G A142P minus 24144137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,freq" 3q13.13 CD96 antigen 19783 rs2276872 CD96 10225 3 112769065 NM_198196 NP_937839 C/G A142P minus 3213525 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.15 123 "HapMap,freq" 3q13.13 CD96 antigen 19784 rs2276872 CD96 10225 3 112769065 NM_198196 NP_937839 C/G A142P minus 3213525 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,freq" 3q13.13 CD96 antigen 19785 rs2276872 CD96 10225 3 112769065 NM_198196 NP_937839 C/G A142P minus 24144137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq" 3q13.13 CD96 antigen 19786 rs2276872 CD96 10225 3 112769065 NM_198196 NP_937839 C/G A142P minus 24144137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,freq" 3q13.13 CD96 antigen 19787 rs2276872 CD96 10225 3 112769065 NM_198196 NP_937839 C/G A142P minus 24144137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,freq" 3q13.13 CD96 antigen 19788 rs2276932 ARHGAP10 79658 4 149341926 XM_496719 XP_496719 C/T M684V minus 3213598 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 123 by freq 4q31.22 Rho GTPase activating protein 10 19789 rs2276932 ARHGAP10 79658 4 149341926 XM_496719 XP_496719 C/T M684V minus 24660574 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 4q31.22 Rho GTPase activating protein 10 19790 rs2276932 ARHGAP10 79658 4 149341926 XM_496719 XP_496719 C/T M684V minus 24660574 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 4q31.22 Rho GTPase activating protein 10 19791 rs2276932 ARHGAP10 79658 4 149341926 XM_496719 XP_496719 C/T M684V minus 24660574 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4q31.22 Rho GTPase activating protein 10 19792 rs2276961 SLC2A9 56606 4 9699250 NM_020041 NP_064425 A/G G25R minus 3213629 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.47 120 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 19793 rs2277119 CYP39A1 51302 6 46717864 NM_016593 NP_057677 A/G R103H minus 3213847 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.19 123 "by doubleHit,submitter,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 19794 rs2277119 CYP39A1 51302 6 46717864 NM_016593 NP_057677 A/G R103H minus 24622412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 19795 rs2277119 CYP39A1 51302 6 46717864 NM_016593 NP_057677 A/G R103H minus 24622412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 19796 rs2277119 CYP39A1 51302 6 46717864 NM_016593 NP_057677 A/G R103H minus 24622412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 19797 rs2277237 DMBT1 1755 10 124338674 NM_007329 NP_015568 C/T R670C plus 3214017 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.04 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19798 rs2277237 DMBT1 1755 10 124338674 NM_017579 NP_060049 C/T R660C plus 3214017 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.04 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19799 rs2277238 DMBT1 1755 10 124341003 NM_007329 NP_015568 C/T T719M plus 3214018 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1448 0.13 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19800 rs2277238 DMBT1 1755 10 124341003 NM_017579 NP_060049 C/T T709M plus 3214018 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1448 0.13 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19801 rs2277244 DMBT1 1755 10 124348573 NM_004406 NP_004397 C/T H585Y plus 3214024 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19802 rs2277244 DMBT1 1755 10 124348573 NM_007329 NP_015568 C/T H1084Y plus 3214024 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19803 rs2277244 DMBT1 1755 10 124348573 NM_017579 NP_060049 C/T H1074Y plus 3214024 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 100 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 19804 rs2277257 SLC29A3 55315 10 72752569 NM_018344 NP_060814 A/G R18G plus 3214038 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 19805 rs2277257 SLC29A3 55315 10 72752569 NM_018344 NP_060814 A/G R18G plus 10609620 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.43 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 19806 rs2277257 SLC29A3 55315 10 72752569 NM_018344 NP_060814 A/G R18G plus 24569624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 19807 rs2277257 SLC29A3 55315 10 72752569 NM_018344 NP_060814 A/G R18G plus 24569624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 19808 rs2277257 SLC29A3 55315 10 72752569 NM_018344 NP_060814 A/G R18G plus 24569624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 19809 rs2277301 OSBPL5 114879 11 3068442 NM_020896 NP_065947 A/G A774T minus 3214107 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.08 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19810 rs2277301 OSBPL5 114879 11 3068442 NM_020896 NP_065947 A/G A774T minus 3214107 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19811 rs2277301 OSBPL5 114879 11 3068442 NM_020896 NP_065947 A/G A774T minus 23535424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19812 rs2277301 OSBPL5 114879 11 3068442 NM_020896 NP_065947 A/G A774T minus 23535424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19813 rs2277301 OSBPL5 114879 11 3068442 NM_020896 NP_065947 A/G A774T minus 23535424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19814 rs2277301 OSBPL5 114879 11 3068442 NM_145638 NP_663613 A/G A706T minus 3214107 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.08 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19815 rs2277301 OSBPL5 114879 11 3068442 NM_145638 NP_663613 A/G A706T minus 3214107 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19816 rs2277301 OSBPL5 114879 11 3068442 NM_145638 NP_663613 A/G A706T minus 23535424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19817 rs2277301 OSBPL5 114879 11 3068442 NM_145638 NP_663613 A/G A706T minus 23535424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19818 rs2277301 OSBPL5 114879 11 3068442 NM_145638 NP_663613 A/G A706T minus 23535424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 11p15.4 oxysterol binding protein-like 5 19819 rs2277319 PIP5K2C 79837 12 56280946 NM_024779 NP_079055 C/G A300G plus 3214130 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.07 100 HapMap 12q13.2 "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma" 19820 rs2277319 PIP5K2C 79837 12 56280946 NM_024779 NP_079055 C/G A300G plus 3214130 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 100 HapMap 12q13.2 "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma" 19821 rs2277330 KRT8 3856 12 51578731 NM_002273 NP_002264 A/G R401W plus 3214141 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 HapMap 12q13 keratin 8 19822 rs2277330 KRT8 3856 12 51578731 NM_002273 NP_002264 A/G R401W plus 3214141 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 12q13 keratin 8 19823 rs2277339 PRIM1 5557 12 55432336 NM_000946 NP_000937 G/T D5A plus 3214152 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.21 123 "HapMap,freq,cluster" 12q13 "primase, polypeptide 1, 49kDa" 19824 rs2277339 PRIM1 5557 12 55432336 NM_000946 NP_000937 G/T D5A plus 3214152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,freq,cluster" 12q13 "primase, polypeptide 1, 49kDa" 19825 rs2277339 PRIM1 5557 12 55432336 NM_000946 NP_000937 G/T D5A plus 23924102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 12q13 "primase, polypeptide 1, 49kDa" 19826 rs2277339 PRIM1 5557 12 55432336 NM_000946 NP_000937 G/T D5A plus 23924102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "HapMap,freq,cluster" 12q13 "primase, polypeptide 1, 49kDa" 19827 rs2277339 PRIM1 5557 12 55432336 NM_000946 NP_000937 G/T D5A plus 23924102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "HapMap,freq,cluster" 12q13 "primase, polypeptide 1, 49kDa" 19828 rs2277413 PZP 5858 12 9209051 NM_002864 NP_002855 C/T V813A minus 3214265 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.45 116 "by doubleHit,submitter,freq,cluster" 12p13-p12.2 pregnancy-zone protein 19829 rs2277415 FOXJ2 55810 12 8091855 NM_018416 NP_060886 C/T P310S plus 3214268 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 12p13.31 forkhead box J2 19830 rs2277415 FOXJ2 55810 12 8091855 NM_018416 NP_060886 C/T P310S plus 3214268 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12p13.31 forkhead box J2 19831 rs2277531 ELL3 80237 15 41856361 NM_025165 NP_079441 C/G Q11E plus 3214415 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "HapMap,freq,cluster" 15q15.1 elongation factor RNA polymerase II-like 3 19832 rs2277531 ELL3 80237 15 41856361 NM_025165 NP_079441 C/G Q11E plus 3214415 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 123 "HapMap,freq,cluster" 15q15.1 elongation factor RNA polymerase II-like 3 19833 rs2277531 ELL3 80237 15 41856361 NM_025165 NP_079441 C/G Q11E plus 28461617 549 KYUGEN CP CEPH (78) 156 0.12 123 "HapMap,freq,cluster" 15q15.1 elongation factor RNA polymerase II-like 3 19834 rs2277531 ELL3 80237 15 41856361 NM_025165 NP_079441 C/G Q11E plus 28461617 1336 KYUGEN JPK3 Japanese (100) 200 0.22 123 "HapMap,freq,cluster" 15q15.1 elongation factor RNA polymerase II-like 3 19835 rs2277552 NOX5 79400 15 67126841 NM_024505 NP_078781 C/T R558H minus 3214442 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.17 100 HapMap 15q22.31 "NADPH oxidase, EF hand calcium-binding domain 5" 19836 rs2277552 NOX5 79400 15 67126841 NM_024505 NP_078781 C/T R558H minus 3214442 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 15q22.31 "NADPH oxidase, EF hand calcium-binding domain 5" 19837 rs2277553 NOX5 79400 15 67122121 NM_024505 NP_078781 A/C K505N minus 3214443 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 HapMap 15q22.31 "NADPH oxidase, EF hand calcium-binding domain 5" 19838 rs2277553 NOX5 79400 15 67122121 NM_024505 NP_078781 A/C K505N minus 3214443 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 15q22.31 "NADPH oxidase, EF hand calcium-binding domain 5" 19839 rs2277596 BBS4 585 15 70816321 NM_033028 NP_149017 C/T M472V minus 3214506 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 100 by freq 15q22.3-q23 Bardet-Biedl syndrome 4 19840 rs2277598 BBS4 585 15 70814531 NM_033028 NP_149017 A/G I354T minus 3214508 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 123 "HapMap,submitter,freq,cluster" 15q22.3-q23 Bardet-Biedl syndrome 4 19841 rs2277598 BBS4 585 15 70814531 NM_033028 NP_149017 A/G I354T minus 10794414 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 123 "HapMap,submitter,freq,cluster" 15q22.3-q23 Bardet-Biedl syndrome 4 19842 rs2277598 BBS4 585 15 70814531 NM_033028 NP_149017 A/G I354T minus 24503422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,submitter,freq,cluster" 15q22.3-q23 Bardet-Biedl syndrome 4 19843 rs2277598 BBS4 585 15 70814531 NM_033028 NP_149017 A/G I354T minus 24503422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,submitter,freq,cluster" 15q22.3-q23 Bardet-Biedl syndrome 4 19844 rs2277598 BBS4 585 15 70814531 NM_033028 NP_149017 A/G I354T minus 24503422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 15q22.3-q23 Bardet-Biedl syndrome 4 19845 rs2277611 DUOX2 50506 15 43179698 NM_014080 NP_054799 C/T R1009Q plus 3214528 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q15.3 dual oxidase 2 19846 rs2277619 STAT5B 6777 17 37629087 NM_012448 NP_036580 C/T A130V minus 3214536 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 100 HapMap 17q11.2 signal transducer and activator of transcription 5B 19847 rs2277619 STAT5B 6777 17 37629087 NM_012448 NP_036580 C/T A130V minus 3214536 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17q11.2 signal transducer and activator of transcription 5B 19848 rs2277649 MYH4 4622 17 10289079 NM_017533 NP_060003 C/T D1802G plus 3214570 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.21 111 "HapMap,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 19849 rs2277649 MYH4 4622 17 10289079 NM_017533 NP_060003 C/T D1802G plus 6612767 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 111 "HapMap,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 19850 rs2277658 DNAH9 1770 17 11612638 NM_001372 NP_001363 C/G Q2438H plus 3214579 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 100 HapMap 17p12 "dynein, axonemal, heavy polypeptide 9" 19851 rs2277658 DNAH9 1770 17 11612638 NM_001372 NP_001363 C/G Q2438H plus 3214579 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17p12 "dynein, axonemal, heavy polypeptide 9" 19852 rs2277680 CXCL16 58191 17 4585312 NM_022059 NP_071342 A/G A200V plus 24213399 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 19853 rs2277680 CXCL16 58191 17 4585312 NM_022059 NP_071342 A/G A200V plus 24213399 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 19854 rs2277680 CXCL16 58191 17 4585312 NM_022059 NP_071342 A/G A200V plus 24213399 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 17p13 chemokine (C-X-C motif) ligand 16 19855 rs2277716 MYO5B 4645 18 45675529 XM_371116 XP_371116 A/G K1429R minus 3214654 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q21 myosin VB 19856 rs2277716 MYO5B 4645 18 45675529 XM_371116 XP_371116 A/G K1429R minus 3214654 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 18q21 myosin VB 19857 rs2277759 PHACTR3 116154 20 57763734 NM_080672 NP_542403 C/T P154L plus 3214709 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 by freq 20q13.32-q13.33 phosphatase and actin regulator 3 19858 rs2277759 PHACTR3 116154 20 57763734 NM_183244 NP_899067 C/T P113L plus 3214709 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 by freq 20q13.32-q13.33 phosphatase and actin regulator 3 19859 rs2277759 PHACTR3 116154 20 57763734 NM_183246 NP_899069 C/T P113L plus 3214709 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 by freq 20q13.32-q13.33 phosphatase and actin regulator 3 19860 rs2277838 P2RXL1 9127 22 19702204 NM_005446 NP_005437 A/G R232H plus 3214825 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.02 123 by freq 22q11.21 "purinergic receptor P2X-like 1, orphan receptor" 19861 rs2277838 P2RXL1 9127 22 19702204 NM_005446 NP_005437 A/G R232H plus 24702936 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 22q11.21 "purinergic receptor P2X-like 1, orphan receptor" 19862 rs2277838 P2RXL1 9127 22 19702204 NM_005446 NP_005437 A/G R232H plus 24702936 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q11.21 "purinergic receptor P2X-like 1, orphan receptor" 19863 rs2277838 P2RXL1 9127 22 19702204 NM_005446 NP_005437 A/G R232H plus 24702936 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.21 "purinergic receptor P2X-like 1, orphan receptor" 19864 rs2277846 L3MBTL2 83746 22 39941747 NM_031488 NP_113676 C/T R300W plus 3214834 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0 100 by freq 22q13.31-q13.33 l(3)mbt-like 2 (Drosophila) 19865 rs2277848 ADAMTSL3 57188 15 82430313 NM_207517 NP_997400 A/G R855H plus 3214836 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 100 HapMap 15q25.2 ADAMTS-like 3 19866 rs2277848 ADAMTSL3 57188 15 82430313 NM_207517 NP_997400 A/G R855H plus 3214836 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q25.2 ADAMTS-like 3 19867 rs2277849 ADAMTSL3 57188 15 82430354 NM_207517 NP_997400 C/T L869F plus 3214837 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.31 123 "HapMap,submitter,freq,cluster" 15q25.2 ADAMTS-like 3 19868 rs2277849 ADAMTSL3 57188 15 82430354 NM_207517 NP_997400 C/T L869F plus 12328283 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 15q25.2 ADAMTS-like 3 19869 rs2277849 ADAMTSL3 57188 15 82430354 NM_207517 NP_997400 C/T L869F plus 24533171 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 15q25.2 ADAMTS-like 3 19870 rs2277849 ADAMTSL3 57188 15 82430354 NM_207517 NP_997400 C/T L869F plus 24533171 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,submitter,freq,cluster" 15q25.2 ADAMTS-like 3 19871 rs2277849 ADAMTSL3 57188 15 82430354 NM_207517 NP_997400 C/T L869F plus 24533171 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 15q25.2 ADAMTS-like 3 19872 rs2277901 CHTF18 63922 16 779085 NM_022092 NP_071375 G/T Q82P minus 3214906 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.28 120 "by cluster,freq" 16p13.3 "CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" 19873 rs2277902 CHTF18 63922 16 779028 NM_022092 NP_071375 A/G S63F minus 3214907 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.01 100 by freq 16p13.3 "CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" 19874 rs2277969 COL5A3 50509 19 9932347 NM_015719 NP_056534 A/G V1691I minus 3215003 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.12 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 19875 rs2277969 COL5A3 50509 19 9932347 NM_015719 NP_056534 A/G V1691I minus 3215003 1303 SEQUENOM CEPH CEPH (92) 92 0.43 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 19876 rs2277969 COL5A3 50509 19 9932347 NM_015719 NP_056534 A/G V1691I minus 23401841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 19877 rs2277969 COL5A3 50509 19 9932347 NM_015719 NP_056534 A/G V1691I minus 23401841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 19878 rs2277969 COL5A3 50509 19 9932347 NM_015719 NP_056534 A/G V1691I minus 23401841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 19879 rs2277998 CD209L 10332 19 7737628 NM_014257 NP_055072 A/G D291N plus 3215037 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.15 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19880 rs2277998 CD209L 10332 19 7737628 NM_014257 NP_055072 A/G D291N plus 24534447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19881 rs2277998 CD209L 10332 19 7737628 NM_014257 NP_055072 A/G D291N plus 24534447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19882 rs2277998 CD209L 10332 19 7737628 NM_014257 NP_055072 A/G D291N plus 24534447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19883 rs2277998 CD209L 10332 19 7737628 NM_214675 NP_999840 A/G D291N plus 3215037 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.15 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19884 rs2277998 CD209L 10332 19 7737628 NM_214675 NP_999840 A/G D291N plus 24534447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19885 rs2277998 CD209L 10332 19 7737628 NM_214675 NP_999840 A/G D291N plus 24534447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19886 rs2277998 CD209L 10332 19 7737628 NM_214675 NP_999840 A/G D291N plus 24534447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19887 rs2277998 CD209L 10332 19 7737628 NM_214676 NP_999841 A/G D268N plus 3215037 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.15 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19888 rs2277998 CD209L 10332 19 7737628 NM_214676 NP_999841 A/G D268N plus 24534447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19889 rs2277998 CD209L 10332 19 7737628 NM_214676 NP_999841 A/G D268N plus 24534447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19890 rs2277998 CD209L 10332 19 7737628 NM_214676 NP_999841 A/G D268N plus 24534447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 CD209 antigen-like 19891 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 3215053 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19892 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19893 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19894 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19895 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 777 SNP500CANCER HISP1 Hispanic (23) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19896 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19897 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19898 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 12675252 1303 SEQUENOM CEPH CEPH (92) 92 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19899 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 23457404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19900 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 23457404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19901 rs2278008 AMACR 23600 5 34025275 NM_014324 NP_055139 C/T E277K plus 23457404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 19902 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.14 100 by freq 6q16.1 EphA7 19903 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 901 AFFY AfAm 12 1 100 by freq 6q16.1 EphA7 19904 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 902 AFFY Caucasian 20 0.05 100 by freq 6q16.1 EphA7 19905 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 903 AFFY Asian 12 0.08 100 by freq 6q16.1 EphA7 19906 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 904 AFFY CEPH 12 1 100 by freq 6q16.1 EphA7 19907 rs2278106 EPHA7 2045 6 94176940 NM_004440 NP_004431 A/G P278S plus 3215180 905 AFFY PDpanel 48 0.08 100 by freq 6q16.1 EphA7 19908 rs2278107 EPHA7 2045 6 94177360 NM_004440 NP_004431 C/T I138V plus 3215181 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.14 100 by freq 6q16.1 EphA7 19909 rs2278161 CNDP2 55748 18 70327063 NM_018235 NP_060705 A/G Y126H minus 3215254 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.29 123 "HapMap,submitter,freq" 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) 19910 rs2278161 CNDP2 55748 18 70327063 NM_018235 NP_060705 A/G Y126H minus 3215254 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,submitter,freq" 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) 19911 rs2278161 CNDP2 55748 18 70327063 NM_018235 NP_060705 A/G Y126H minus 24513181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,submitter,freq" 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) 19912 rs2278161 CNDP2 55748 18 70327063 NM_018235 NP_060705 A/G Y126H minus 24513181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq" 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) 19913 rs2278161 CNDP2 55748 18 70327063 NM_018235 NP_060705 A/G Y126H minus 24513181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,submitter,freq" 18q22.3 CNDP dipeptidase 2 (metallopeptidase M20 family) 19914 rs2278176 PVT1 5820 8 129020987 XM_372058 XP_372058 C/T H125Y plus 13436201 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 119 "HapMap,freq,cluster" 8q24 "Pvt1 oncogene homolog, MYC activator (mouse)" 19915 rs2278240 CMYA5 202333 5 79069147 NM_153610 NP_705838 A/G G29R plus 3215376 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.07 100 HapMap 5q14.1 cardiomyopathy associated 5 19916 rs2278240 CMYA5 202333 5 79069147 NM_153610 NP_705838 A/G G29R plus 3215376 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 100 HapMap 5q14.1 cardiomyopathy associated 5 19917 rs2278287 THEG 51298 19 318178 NM_016585 NP_057669 C/T R267Q plus 3215443 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 100 by freq 19pter-p13 Theg homolog (mouse) 19918 rs2278287 THEG 51298 19 318178 NM_199202 NP_954672 C/T R243Q plus 3215443 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 100 by freq 19pter-p13 Theg homolog (mouse) 19919 rs2278308 ARID5B 84159 10 63448612 XM_084482 XP_084482 A/C Q521H minus 3215467 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.42 116 "by submitter,freq,cluster" 10q21.3 AT rich interactive domain 5B (MRF1-like) 19920 rs2278329 OSMR 9180 5 38957545 NM_003999 NP_003990 A/G D553N plus 3215501 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.31 100 HapMap 5p13.2 oncostatin M receptor 19921 rs2278329 OSMR 9180 5 38957545 NM_003999 NP_003990 A/G D553N plus 3215501 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 5p13.2 oncostatin M receptor 19922 rs2278339 DCC 1630 18 49120193 NM_005215 NP_005206 A/C I759M minus 3215515 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q21.3 deleted in colorectal carcinoma 19923 rs2278370 FAT2 2196 5 150910379 NM_001447 NP_001438 C/T G1515S plus 3215557 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.17 120 "HapMap,doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19924 rs2278370 FAT2 2196 5 150910379 NM_001447 NP_001438 C/T G1515S plus 3215557 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 120 "HapMap,doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19925 rs2278371 FAT2 2196 5 150910538 NM_001447 NP_001438 C/T V1462M plus 3215558 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.23 123 "by submitter,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19926 rs2278371 FAT2 2196 5 150910538 NM_001447 NP_001438 C/T V1462M plus 24198513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19927 rs2278371 FAT2 2196 5 150910538 NM_001447 NP_001438 C/T V1462M plus 24198513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19928 rs2278371 FAT2 2196 5 150910538 NM_001447 NP_001438 C/T V1462M plus 24198513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by submitter,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 19929 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 3215613 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.23 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19930 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 5586998 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.19 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19931 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 5586998 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.23 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19932 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 5586998 776 SNP500CANCER AFR1 African / African-American (24) 48 0.12 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19933 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 5586998 777 SNP500CANCER HISP1 Hispanic (23) 46 0.13 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19934 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 5586998 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.27 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19935 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 6905453 844 STRUEWING CEPH_PARENT_1 120 0.15 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19936 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 24203888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19937 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 24203888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19938 rs2278415 ZNF350 59348 19 57160015 NM_021632 NP_067645 A/T R501S plus 24203888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 19q13.41 zinc finger protein 350 19939 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 3215618 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19940 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 5586996 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.33 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19941 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 5586996 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.27 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19942 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 5586996 776 SNP500CANCER AFR1 African / African-American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19943 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 5586996 777 SNP500CANCER HISP1 Hispanic (23) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19944 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 5586996 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19945 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 6905443 844 STRUEWING CEPH_PARENT_1 118 0.17 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19946 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 23776840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19947 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 23776840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19948 rs2278420 ZNF350 59348 19 57163684 NM_021632 NP_067645 A/G L66P plus 23776840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 19q13.41 zinc finger protein 350 19949 rs2278428 NCR1 9437 19 60109866 NM_004829 NP_004820 A/C K82Q plus 3215627 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.39 123 by freq 19q13.42 natural cytotoxicity triggering receptor 1 19950 rs2278428 NCR1 9437 19 60109866 NM_004829 NP_004820 A/C K82Q plus 24200495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 19q13.42 natural cytotoxicity triggering receptor 1 19951 rs2278428 NCR1 9437 19 60109866 NM_004829 NP_004820 A/C K82Q plus 24200495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19q13.42 natural cytotoxicity triggering receptor 1 19952 rs2278428 NCR1 9437 19 60109866 NM_004829 NP_004820 A/C K82Q plus 24200495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 19q13.42 natural cytotoxicity triggering receptor 1 19953 rs2278586 OXER1 165140 2 42901752 NM_148962 NP_683765 C/G L407V plus 3215866 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.32 123 "by doubleHit,submitter,freq,cluster" 2p22.1 oxoeicosanoid (OXE) receptor 1 19954 rs2278586 OXER1 165140 2 42901752 NM_148962 NP_683765 C/G L407V plus 23871598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 2p22.1 oxoeicosanoid (OXE) receptor 1 19955 rs2278586 OXER1 165140 2 42901752 NM_148962 NP_683765 C/G L407V plus 23871598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,submitter,freq,cluster" 2p22.1 oxoeicosanoid (OXE) receptor 1 19956 rs2278586 OXER1 165140 2 42901752 NM_148962 NP_683765 C/G L407V plus 23871598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 2p22.1 oxoeicosanoid (OXE) receptor 1 19957 rs2278658 LTK 4058 15 39584263 NM_002344 NP_002335 C/T W707X plus 3215975 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 15q15.1-q21.1 leukocyte tyrosine kinase 19958 rs2278658 LTK 4058 15 39584263 NM_002344 NP_002335 C/T W707X plus 3215975 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 15q15.1-q21.1 leukocyte tyrosine kinase 19959 rs2278658 LTK 4058 15 39584263 NM_206961 NP_996844 C/T W646X plus 3215975 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 15q15.1-q21.1 leukocyte tyrosine kinase 19960 rs2278658 LTK 4058 15 39584263 NM_206961 NP_996844 C/T W646X plus 3215975 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 15q15.1-q21.1 leukocyte tyrosine kinase 19961 rs2278831 SIGLEC5 8778 19 56822931 NM_003830 NP_003821 A/G F322S plus 3216216 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 100 "HapMap,freq" 19q13.3 sialic acid binding Ig-like lectin 5 19962 rs2278842 PKD2L1 9033 10 102046735 NM_016112 NP_057196 A/G V393I minus 24487803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq" 10q24 polycystic kidney disease 2-like 1 19963 rs2278842 PKD2L1 9033 10 102046735 NM_016112 NP_057196 A/G V393I minus 24487803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq" 10q24 polycystic kidney disease 2-like 1 19964 rs2278842 PKD2L1 9033 10 102046735 NM_016112 NP_057196 A/G V393I minus 24487803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq" 10q24 polycystic kidney disease 2-like 1 19965 rs2278868 SCAP1 8631 17 43617170 NM_003726 NP_003717 C/T G161S plus 3216268 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 17q21.32 src family associated phosphoprotein 1 19966 rs2278868 SCAP1 8631 17 43617170 NM_003726 NP_003717 C/T G161S plus 10852511 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 17q21.32 src family associated phosphoprotein 1 19967 rs2278868 SCAP1 8631 17 43617170 NM_003726 NP_003717 C/T G161S plus 24579848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 17q21.32 src family associated phosphoprotein 1 19968 rs2278868 SCAP1 8631 17 43617170 NM_003726 NP_003717 C/T G161S plus 24579848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 17q21.32 src family associated phosphoprotein 1 19969 rs2278868 SCAP1 8631 17 43617170 NM_003726 NP_003717 C/T G161S plus 24579848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 17q21.32 src family associated phosphoprotein 1 19970 rs2278943 QSCN6 5768 1 176884835 NM_002826 NP_002817 G/T A294S plus 3216360 738 YUSUKE JBIC-ALLELE Japanese (752) 1308 0 100 by freq 1q24 quiescin Q6 19971 rs2279103 CTDP1 9150 18 75574115 NM_004715 NP_004706 C/T T340M plus 3216593 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 100 by freq 18q23 "CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1" 19972 rs2279103 CTDP1 9150 18 75574115 NM_048368 NP_430255 C/T T340M plus 3216593 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 100 by freq 18q23 "CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1" 19973 rs2279112 NOV 4856 8 120498205 NM_002514 NP_002505 A/G R42Q plus 23386113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 8q24.1 nephroblastoma overexpressed gene 19974 rs2279112 NOV 4856 8 120498205 NM_002514 NP_002505 A/G R42Q plus 23386113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.38 123 "by doubleHit,freq,cluster" 8q24.1 nephroblastoma overexpressed gene 19975 rs2279112 NOV 4856 8 120498205 NM_002514 NP_002505 A/G R42Q plus 23386113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 8q24.1 nephroblastoma overexpressed gene 19976 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.15 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19977 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19978 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 902 AFFY Caucasian 24 1 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19979 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 903 AFFY Asian 12 1 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19980 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 904 AFFY CEPH 12 1 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19981 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 3216749 905 AFFY PDpanel 48 0.06 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19982 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 23883374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19983 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 23883374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19984 rs2279218 PITRM1 10531 10 3171107 NM_014889 NP_055704 A/G P969L plus 23883374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 19985 rs2279252 EVC 2121 4 5918566 NM_014556 NP_055371 C/T R760Q minus 3216795 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 100 by freq 4p16 Ellis van Creveld syndrome 19986 rs2279252 EVC 2121 4 5918566 NM_153717 NP_714928 C/T R760Q minus 3216795 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 100 by freq 4p16 Ellis van Creveld syndrome 19987 rs2279269 C18orf4 92126 18 63330809 NM_032160 NP_115536 A/G P683S plus 3216814 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 NCAG1 19988 rs2279269 C18orf4 92126 18 63330809 NM_032160 NP_115536 A/G P683S plus 24048773 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 NCAG1 19989 rs2279269 C18orf4 92126 18 63330809 NM_032160 NP_115536 A/G P683S plus 24048773 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 NCAG1 19990 rs2279269 C18orf4 92126 18 63330809 NM_032160 NP_115536 A/G P683S plus 24048773 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 18q22.1 NCAG1 19991 rs2279279 SPON2 10417 4 1154107 NM_012445 NP_036577 C/G V242L plus 3216828 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.29 121 "by doubleHit,freq,cluster" 4p16.3 "spondin 2, extracellular matrix protein" 19992 rs2279343 CYP2B6 1555 19 46207103 NM_000767 NP_000758 A/G K262R plus 3216912 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.25 121 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 19993 rs2279343 CYP2B6 1555 19 46207103 NM_000767 NP_000758 A/G K262R plus 20421508 1244 PHARMGKB_PAAR-SJCRH PA130240278 120 0.06 121 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 19994 rs2279374 GAB2 9846 11 77615335 NM_012296 NP_036428 C/T P306L minus 3216970 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0 100 by freq 11q13.4 GRB2-associated binding protein 2 19995 rs2279374 GAB2 9846 11 77615335 NM_080491 NP_536739 C/T P344L minus 3216970 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0 100 by freq 11q13.4 GRB2-associated binding protein 2 19996 rs2279381 FABP7 2173 6 123143243 NM_001446 NP_001437 A/G T61M minus 3216981 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.03 123 "by cluster,freq" 6q22-q23 "fatty acid binding protein 7, brain" 19997 rs2279381 FABP7 2173 6 123143243 NM_001446 NP_001437 A/G T61M minus 23901943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q22-q23 "fatty acid binding protein 7, brain" 19998 rs2279381 FABP7 2173 6 123143243 NM_001446 NP_001437 A/G T61M minus 23901943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6q22-q23 "fatty acid binding protein 7, brain" 19999 rs2279381 FABP7 2173 6 123143243 NM_001446 NP_001437 A/G T61M minus 23901943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 6q22-q23 "fatty acid binding protein 7, brain" 20000 rs2279517 CCDC8 83987 19 51606387 NM_032040 NP_114429 C/G K507N minus 3217186 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 116 "HapMap,freq,cluster" 19q13.33 coiled-coil domain containing 8 20001 rs2279517 CCDC8 83987 19 51606387 NM_032040 NP_114429 C/G K507N minus 10936500 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 116 "HapMap,freq,cluster" 19q13.33 coiled-coil domain containing 8 20002 rs2279542 ADAM22 53616 7 87209148 NM_004194 NP_004185 C/G P81R plus 3217228 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20003 rs2279542 ADAM22 53616 7 87209148 NM_004194 NP_004185 C/G P81R plus 24527284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20004 rs2279542 ADAM22 53616 7 87209148 NM_004194 NP_004185 C/G P81R plus 24527284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20005 rs2279542 ADAM22 53616 7 87209148 NM_004194 NP_004185 C/G P81R plus 24527284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20006 rs2279542 ADAM22 53616 7 87209148 NM_016351 NP_057435 C/G P81R plus 3217228 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20007 rs2279542 ADAM22 53616 7 87209148 NM_016351 NP_057435 C/G P81R plus 24527284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20008 rs2279542 ADAM22 53616 7 87209148 NM_016351 NP_057435 C/G P81R plus 24527284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20009 rs2279542 ADAM22 53616 7 87209148 NM_016351 NP_057435 C/G P81R plus 24527284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20010 rs2279542 ADAM22 53616 7 87209148 NM_021721 NP_068367 C/G P81R plus 3217228 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20011 rs2279542 ADAM22 53616 7 87209148 NM_021721 NP_068367 C/G P81R plus 24527284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20012 rs2279542 ADAM22 53616 7 87209148 NM_021721 NP_068367 C/G P81R plus 24527284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20013 rs2279542 ADAM22 53616 7 87209148 NM_021721 NP_068367 C/G P81R plus 24527284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20014 rs2279542 ADAM22 53616 7 87209148 NM_021722 NP_068368 C/G P81R plus 3217228 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20015 rs2279542 ADAM22 53616 7 87209148 NM_021722 NP_068368 C/G P81R plus 24527284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20016 rs2279542 ADAM22 53616 7 87209148 NM_021722 NP_068368 C/G P81R plus 24527284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20017 rs2279542 ADAM22 53616 7 87209148 NM_021722 NP_068368 C/G P81R plus 24527284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20018 rs2279542 ADAM22 53616 7 87209148 NM_021723 NP_068369 C/G P81R plus 3217228 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.47 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20019 rs2279542 ADAM22 53616 7 87209148 NM_021723 NP_068369 C/G P81R plus 24527284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20020 rs2279542 ADAM22 53616 7 87209148 NM_021723 NP_068369 C/G P81R plus 24527284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20021 rs2279542 ADAM22 53616 7 87209148 NM_021723 NP_068369 C/G P81R plus 24527284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 7q21 a disintegrin and metalloproteinase domain 22 20022 rs2279574 DUSP6 1848 12 88247945 NM_001946 NP_001937 A/C V114L plus 3217273 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.46 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20023 rs2279574 DUSP6 1848 12 88247945 NM_001946 NP_001937 A/C V114L plus 24463834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20024 rs2279574 DUSP6 1848 12 88247945 NM_001946 NP_001937 A/C V114L plus 24463834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20025 rs2279574 DUSP6 1848 12 88247945 NM_001946 NP_001937 A/C V114L plus 24463834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20026 rs2279574 DUSP6 1848 12 88247945 NM_022652 NP_073143 A/C V114L plus 3217273 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.46 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20027 rs2279574 DUSP6 1848 12 88247945 NM_022652 NP_073143 A/C V114L plus 24463834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20028 rs2279574 DUSP6 1848 12 88247945 NM_022652 NP_073143 A/C V114L plus 24463834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20029 rs2279574 DUSP6 1848 12 88247945 NM_022652 NP_073143 A/C V114L plus 24463834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 12q22-q23 dual specificity phosphatase 6 20030 rs2279587 ITGA1 3672 5 52250338 NM_181501 NP_852478 C/T V670I minus 23982908 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 20031 rs2279587 ITGA1 3672 5 52250338 NM_181501 NP_852478 C/T V670I minus 23982908 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 20032 rs2279587 ITGA1 3672 5 52250338 NM_181501 NP_852478 C/T V670I minus 23982908 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 5q11.2 "integrin, alpha 1" 20033 rs2280026 MBTPS1 8720 16 82645527 NM_201268 NP_957720 A/G Q634R minus 3217931 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.25 120 "HapMap,freq,cluster" 16q24 "membrane-bound transcription factor protease, site 1" 20034 rs2280026 MBTPS1 8720 16 82645527 NM_201268 NP_957720 A/G Q634R minus 3217931 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 120 "HapMap,freq,cluster" 16q24 "membrane-bound transcription factor protease, site 1" 20035 rs2280084 NUP210 23225 3 13370579 NM_024923 NP_079199 G/T R786L minus 3218049 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.49 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20036 rs2280084 NUP210 23225 3 13370579 NM_024923 NP_079199 G/T R786L minus 24306642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.45 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20037 rs2280084 NUP210 23225 3 13370579 NM_024923 NP_079199 G/T R786L minus 24306642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20038 rs2280084 NUP210 23225 3 13370579 NM_024923 NP_079199 G/T R786L minus 24306642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20039 rs2280085 NUP210 23225 3 13370475 NM_024923 NP_079199 C/G P821A minus 3218050 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.36 123 "HapMap,doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20040 rs2280085 NUP210 23225 3 13370475 NM_024923 NP_079199 C/G P821A minus 11561261 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20041 rs2280085 NUP210 23225 3 13370475 NM_024923 NP_079199 C/G P821A minus 23892643 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20042 rs2280085 NUP210 23225 3 13370475 NM_024923 NP_079199 C/G P821A minus 23892643 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20043 rs2280085 NUP210 23225 3 13370475 NM_024923 NP_079199 C/G P821A minus 23892643 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 20044 rs2280091 ADAM33 80332 20 3598234 NM_025220 NP_079496 A/G M764T plus 3218058 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.13 108 "by cluster,freq" 20p13 a disintegrin and metalloproteinase domain 33 20045 rs2280091 ADAM33 80332 20 3598234 NM_153202 NP_694882 A/G M738T plus 3218058 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.13 108 "by cluster,freq" 20p13 a disintegrin and metalloproteinase domain 33 20046 rs2280099 TIGD2 166815 4 90392727 NM_145715 NP_663761 C/T H475R minus 24303301 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq" 4q22.1 tigger transposable element derived 2 20047 rs2280099 TIGD2 166815 4 90392727 NM_145715 NP_663761 C/T H475R minus 24303301 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by submitter,freq" 4q22.1 tigger transposable element derived 2 20048 rs2280099 TIGD2 166815 4 90392727 NM_145715 NP_663761 C/T H475R minus 24303301 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq" 4q22.1 tigger transposable element derived 2 20049 rs2280134 ART1 417 11 3638095 NM_004314 NP_004305 C/T L257P plus 3218116 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.43 123 "by doubleHit,freq,cluster" 11p15 ADP-ribosyltransferase 1 20050 rs2280134 ART1 417 11 3638095 NM_004314 NP_004305 C/T L257P plus 23537348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11p15 ADP-ribosyltransferase 1 20051 rs2280134 ART1 417 11 3638095 NM_004314 NP_004305 C/T L257P plus 23537348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 11p15 ADP-ribosyltransferase 1 20052 rs2280134 ART1 417 11 3638095 NM_004314 NP_004305 C/T L257P plus 23537348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11p15 ADP-ribosyltransferase 1 20053 rs2280205 SLC2A9 56606 4 9586192 NM_001001290 NP_001001290 A/G P321L plus 3218215 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.33 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20054 rs2280205 SLC2A9 56606 4 9586192 NM_001001290 NP_001001290 A/G P321L plus 24315185 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.45 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20055 rs2280205 SLC2A9 56606 4 9586192 NM_001001290 NP_001001290 A/G P321L plus 24315185 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.11 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20056 rs2280205 SLC2A9 56606 4 9586192 NM_001001290 NP_001001290 A/G P321L plus 24315185 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20057 rs2280205 SLC2A9 56606 4 9586192 NM_020041 NP_064425 A/G P350L plus 3218215 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.33 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20058 rs2280205 SLC2A9 56606 4 9586192 NM_020041 NP_064425 A/G P350L plus 24315185 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.45 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20059 rs2280205 SLC2A9 56606 4 9586192 NM_020041 NP_064425 A/G P350L plus 24315185 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.11 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20060 rs2280205 SLC2A9 56606 4 9586192 NM_020041 NP_064425 A/G P350L plus 24315185 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "by submitter,freq,cluster" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 20061 rs2280289 RAB17 64284 2 238265729 NM_022449 NP_071894 A/G L191P plus 3218334 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.39 123 "by cluster,freq" 2q37.3 "RAB17, member RAS oncogene family" 20062 rs2280289 RAB17 64284 2 238265729 NM_022449 NP_071894 A/G L191P plus 23886373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 2q37.3 "RAB17, member RAS oncogene family" 20063 rs2280289 RAB17 64284 2 238265729 NM_022449 NP_071894 A/G L191P plus 23886373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by cluster,freq" 2q37.3 "RAB17, member RAS oncogene family" 20064 rs2280289 RAB17 64284 2 238265729 NM_022449 NP_071894 A/G L191P plus 23886373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by cluster,freq" 2q37.3 "RAB17, member RAS oncogene family" 20065 rs2280480 HUMCYT2A 51350 12 51448795 NM_015848 NP_056932 C/T T629M minus 3218591 738 YUSUKE JBIC-ALLELE Japanese (752) 1286 0.23 123 "HapMap,freq" 12q13.13 cytokeratin 2 20066 rs2280480 HUMCYT2A 51350 12 51448795 NM_015848 NP_056932 C/T T629M minus 3218591 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,freq" 12q13.13 cytokeratin 2 20067 rs2280480 HUMCYT2A 51350 12 51448795 NM_015848 NP_056932 C/T T629M minus 24343104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq" 12q13.13 cytokeratin 2 20068 rs2280480 HUMCYT2A 51350 12 51448795 NM_015848 NP_056932 C/T T629M minus 24343104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,freq" 12q13.13 cytokeratin 2 20069 rs2280480 HUMCYT2A 51350 12 51448795 NM_015848 NP_056932 C/T T629M minus 24343104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq" 12q13.13 cytokeratin 2 20070 rs2280792 PAPLN 89932 14 72781147 XM_370765 XP_370765 A/G S18G plus 3219059 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.48 100 "HapMap,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20071 rs2280792 PAPLN 89932 14 72781147 XM_370765 XP_370765 A/G S18G plus 3219059 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.16 100 "HapMap,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20072 rs2280801 BAT2 7916 6 31700043 NM_004638 NP_004629 A/G P106L minus 3219077 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.08 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20073 rs2280801 BAT2 7916 6 31700043 NM_004638 NP_004629 A/G P106L minus 23962484 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20074 rs2280801 BAT2 7916 6 31700043 NM_004638 NP_004629 A/G P106L minus 23962484 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20075 rs2280801 BAT2 7916 6 31700043 NM_004638 NP_004629 A/G P106L minus 23962484 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20076 rs2280801 BAT2 7916 6 31700043 NM_080686 NP_542417 A/G P106L minus 3219077 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.08 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20077 rs2280801 BAT2 7916 6 31700043 NM_080686 NP_542417 A/G P106L minus 23962484 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20078 rs2280801 BAT2 7916 6 31700043 NM_080686 NP_542417 A/G P106L minus 23962484 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20079 rs2280801 BAT2 7916 6 31700043 NM_080686 NP_542417 A/G P106L minus 23962484 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 20080 rs2280838 SLC39A4 55630 8 145612810 NM_130849 NP_570901 A/G A58T minus 3219120 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.41 121 "by doubleHit,freq,cluster" 8q24.3 "solute carrier family 39 (zinc transporter), member 4" 20081 rs2280896 MYOM2 9172 8 2044615 NM_003970 NP_003961 A/T L1022F plus 3219190 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 100 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 20082 rs2281180 ASTN 460 1 173595493 NM_004319 NP_004310 C/G H934Q plus 3219559 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.23 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20083 rs2281180 ASTN 460 1 173595493 NM_004319 NP_004310 C/G H934Q plus 23690792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20084 rs2281180 ASTN 460 1 173595493 NM_004319 NP_004310 C/G H934Q plus 23690792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20085 rs2281180 ASTN 460 1 173595493 NM_004319 NP_004310 C/G H934Q plus 23690792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20086 rs2281180 ASTN 460 1 173595493 NM_207108 NP_996991 C/G H934Q plus 3219559 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.23 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20087 rs2281180 ASTN 460 1 173595493 NM_207108 NP_996991 C/G H934Q plus 23690792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20088 rs2281180 ASTN 460 1 173595493 NM_207108 NP_996991 C/G H934Q plus 23690792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20089 rs2281180 ASTN 460 1 173595493 NM_207108 NP_996991 C/G H934Q plus 23690792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 1q25.2 astrotactin 20090 rs2281192 GTSE1 51512 22 45039639 NM_016426 NP_057510 A/G S470L minus 3219576 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.01 100 by freq 22q13.2-q13.3 G-2 and S-phase expressed 1 20091 rs2281209 RALY 22913 20 32128587 NM_007367 NP_031393 C/T G235S minus 3219597 738 YUSUKE JBIC-ALLELE Japanese (752) 938 0.09 100 by freq 20q11.21-q11.23 "RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow)" 20092 rs2281209 RALY 22913 20 32128587 NM_016732 NP_057951 C/T G251S minus 3219597 738 YUSUKE JBIC-ALLELE Japanese (752) 938 0.09 100 by freq 20q11.21-q11.23 "RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow)" 20093 rs2281820 MLN 4295 6 33876875 NM_002418 NP_002409 C/T V15A minus 3220455 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.2 119 "by doubleHit,freq,cluster" 6p21.3 motilin 20094 rs2281891 CYP2C18 1562 10 96483048 NM_000772 NP_000763 A/G T385M minus 3220576 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.28 123 "by submitter,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 18" 20095 rs2281891 CYP2C18 1562 10 96483048 NM_000772 NP_000763 A/G T385M minus 24092193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 18" 20096 rs2281891 CYP2C18 1562 10 96483048 NM_000772 NP_000763 A/G T385M minus 24092193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by submitter,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 18" 20097 rs2281891 CYP2C18 1562 10 96483048 NM_000772 NP_000763 A/G T385M minus 24092193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by submitter,freq,cluster" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 18" 20098 rs2281929 BTBD4 140685 20 61892524 NM_025224 NP_079500 C/T T11A plus 3220649 738 YUSUKE JBIC-ALLELE Japanese (752) 1082 0.42 123 "by doubleHit,submitter,freq,cluster" 20q13.33 BTB (POZ) domain containing 4 20099 rs2281929 BTBD4 140685 20 61892524 NM_025224 NP_079500 C/T T11A plus 24130187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 20q13.33 BTB (POZ) domain containing 4 20100 rs2281929 BTBD4 140685 20 61892524 NM_025224 NP_079500 C/T T11A plus 24130187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 20q13.33 BTB (POZ) domain containing 4 20101 rs2281929 BTBD4 140685 20 61892524 NM_025224 NP_079500 C/T T11A plus 24130187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 20q13.33 BTB (POZ) domain containing 4 20102 rs2281939 SORBS1 10580 10 97164342 NM_015385 NP_056200 A/G T205A minus 23589374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 10q23.3-q24.1 sorbin and SH3 domain containing 1 20103 rs2281939 SORBS1 10580 10 97164342 NM_015385 NP_056200 A/G T205A minus 23589374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by cluster,freq" 10q23.3-q24.1 sorbin and SH3 domain containing 1 20104 rs2281939 SORBS1 10580 10 97164342 NM_015385 NP_056200 A/G T205A minus 23589374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 10q23.3-q24.1 sorbin and SH3 domain containing 1 20105 rs2282076 ZFP37 7539 9 112898504 NM_003408 NP_003399 A/T V7D minus 3220843 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 9q32 zinc finger protein 37 homolog (mouse) 20106 rs2282076 ZFP37 7539 9 112898504 NM_003408 NP_003399 A/T V7D minus 3220843 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 9q32 zinc finger protein 37 homolog (mouse) 20107 rs2282076 ZFP37 7539 9 112898504 NM_003408 NP_003399 A/T V7D minus 24049399 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 9q32 zinc finger protein 37 homolog (mouse) 20108 rs2282076 ZFP37 7539 9 112898504 NM_003408 NP_003399 A/T V7D minus 24049399 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 9q32 zinc finger protein 37 homolog (mouse) 20109 rs2282076 ZFP37 7539 9 112898504 NM_003408 NP_003399 A/T V7D minus 24049399 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 9q32 zinc finger protein 37 homolog (mouse) 20110 rs2282143 SLC22A1 6580 6 160528054 NM_003057 NP_003048 C/T P341L plus 3220942 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 111 "by cluster,freq" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 20111 rs2282143 SLC22A1 6580 6 160528054 NM_153187 NP_694857 C/T P341L plus 3220942 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 111 "by cluster,freq" 6q26 "solute carrier family 22 (organic cation transporter), member 1" 20112 rs2282164 MGMT 4255 10 131396218 NM_002412 NP_002403 C/G W65C minus 3220976 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 by freq 10q26 O-6-methylguanine-DNA methyltransferase 20113 rs2282164 MGMT 4255 10 131396218 NM_002412 NP_002403 C/G W65C minus 3220976 1303 SEQUENOM CEPH CEPH (92) 92 1 100 by freq 10q26 O-6-methylguanine-DNA methyltransferase 20114 rs2282238 DUSP5 1847 10 112252551 NM_004419 NP_004410 C/G E154D minus 3221093 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 120 "by cluster,freq" 10q25 dual specificity phosphatase 5 20115 rs2282258 LCN8 138307 9 136925449 XM_380172 XP_380172 G/T G141V minus 3221119 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.13 119 "by cluster,freq" 9q34.3 lipocalin 8 20116 rs2282284 FCRH3 115352 1 154461616 NM_052939 NP_443171 C/T N721S plus 3221155 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.03 123 "by cluster,freq" 1q21-q22 Fc receptor-like protein 3 20117 rs2282284 FCRH3 115352 1 154461616 NM_052939 NP_443171 C/T N721S plus 23877969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q21-q22 Fc receptor-like protein 3 20118 rs2282284 FCRH3 115352 1 154461616 NM_052939 NP_443171 C/T N721S plus 23877969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 1q21-q22 Fc receptor-like protein 3 20119 rs2282284 FCRH3 115352 1 154461616 NM_052939 NP_443171 C/T N721S plus 23877969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1q21-q22 Fc receptor-like protein 3 20120 rs2282298 SPRL5A 254910 1 149297318 NM_178438 NP_848525 A/G R79X minus 3221174 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.02 123 by freq 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 20121 rs2282298 SPRL5A 254910 1 149297318 NM_178438 NP_848525 A/G R79X minus 23868608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 20122 rs2282298 SPRL5A 254910 1 149297318 NM_178438 NP_848525 A/G R79X minus 23868608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 20123 rs2282298 SPRL5A 254910 1 149297318 NM_178438 NP_848525 A/G R79X minus 23868608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 1q21.3 small proline rich-like (epidermal differentiation complex) 5A 20124 rs2282440 SDC3 9672 1 31016413 XM_375712 XP_375712 C/T T553I minus 3221402 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.45 123 "by submitter,freq,cluster" 1pter-p22.3 syndecan 3 (N-syndecan) 20125 rs2282440 SDC3 9672 1 31016413 XM_375712 XP_375712 C/T T553I minus 24150743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1pter-p22.3 syndecan 3 (N-syndecan) 20126 rs2282440 SDC3 9672 1 31016413 XM_375712 XP_375712 C/T T553I minus 24150743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by submitter,freq,cluster" 1pter-p22.3 syndecan 3 (N-syndecan) 20127 rs2282440 SDC3 9672 1 31016413 XM_375712 XP_375712 C/T T553I minus 24150743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq,cluster" 1pter-p22.3 syndecan 3 (N-syndecan) 20128 rs2282488 P4HA3 283208 11 73665815 NM_182904 NP_878907 A/G D400N minus 3221479 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "by doubleHit,submitter,freq,cluster" 11q13.3 "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III" 20129 rs2282488 P4HA3 283208 11 73665815 NM_182904 NP_878907 A/G D400N minus 24149289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 11q13.3 "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III" 20130 rs2282488 P4HA3 283208 11 73665815 NM_182904 NP_878907 A/G D400N minus 24149289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 11q13.3 "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III" 20131 rs2282488 P4HA3 283208 11 73665815 NM_182904 NP_878907 A/G D400N minus 24149289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 11q13.3 "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III" 20132 rs2282537 POU2F3 25833 11 119693181 NM_014352 NP_055167 C/T R390K minus 3221563 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.18 100 "HapMap,freq" 11q23.3 "POU domain, class 2, transcription factor 3" 20133 rs2282537 POU2F3 25833 11 119693181 NM_014352 NP_055167 C/T R390K minus 3221563 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 100 "HapMap,freq" 11q23.3 "POU domain, class 2, transcription factor 3" 20134 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20135 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20136 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20137 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20138 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20139 rs2282556 MC4R 4160 18 56190271 NM_005912 NP_005903 C/T G98R plus 12675531 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 118 "HapMap,cluster" 18q22 melanocortin 4 receptor 20140 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.25 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20141 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20142 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 901 AFFY AfAm 12 0.33 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20143 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 902 AFFY Caucasian 24 0.17 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20144 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 903 AFFY Asian 12 0.25 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20145 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 904 AFFY CEPH 12 0.25 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20146 rs2282683 GCNT1 2650 9 76347305 NM_001490 NP_001481 A/G I152V plus 3221823 905 AFFY PDpanel 48 0.15 100 "HapMap,freq" 9q13 "glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)" 20147 rs2285215 TNN 63923 1 171824331 XM_040527 XP_040527 A/G P930L minus 3225252 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.45 121 "by doubleHit,freq,cluster" 1q23-q24 tenascin N 20148 rs2285348 GCC1 79571 7 126818927 NM_024523 NP_078799 C/G C87W plus 3225425 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 100 by freq 7q32.2 GRIP and coiled-coil domain containing 1 20149 rs2285421 UPK1A 11045 19 40860754 NM_007000 NP_008931 C/T M257T plus 3225533 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.31 123 "by doubleHit,freq,cluster" 19q13.13 uroplakin 1A 20150 rs2285421 UPK1A 11045 19 40860754 NM_007000 NP_008931 C/T M257T plus 24573652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 19q13.13 uroplakin 1A 20151 rs2285421 UPK1A 11045 19 40860754 NM_007000 NP_008931 C/T M257T plus 24573652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 19q13.13 uroplakin 1A 20152 rs2285421 UPK1A 11045 19 40860754 NM_007000 NP_008931 C/T M257T plus 24573652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 19q13.13 uroplakin 1A 20153 rs2285487 XPMC2H 57109 9 133307036 NM_020385 NP_065118 C/T T283A plus 23650917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 "by cluster,freq" 9q34.3 XPMC2 prevents mitotic catastrophe 2 homolog (Xenopus laevis) 20154 rs2285487 XPMC2H 57109 9 133307036 NM_020385 NP_065118 C/T T283A plus 23650917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 9q34.3 XPMC2 prevents mitotic catastrophe 2 homolog (Xenopus laevis) 20155 rs2285487 XPMC2H 57109 9 133307036 NM_020385 NP_065118 C/T T283A plus 23650917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 9q34.3 XPMC2 prevents mitotic catastrophe 2 homolog (Xenopus laevis) 20156 rs2285644 SLC4A1 6521 17 39684147 NM_000342 NP_000333 C/T P854L minus 3225822 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.04 121 "by cluster,freq" 17q21-q22 "solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)" 20157 rs2285751 RNF126 55658 19 602852 NM_017876 NP_060346 C/T V68M plus 3225980 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.11 100 "HapMap,freq" 19p13.3 ring finger protein 126 20158 rs2285751 RNF126 55658 19 602852 NM_017876 NP_060346 C/T V68M plus 3225980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 100 "HapMap,freq" 19p13.3 ring finger protein 126 20159 rs2285751 RNF126 55658 19 602852 NM_194460 NP_919442 C/T V68M plus 3225980 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.11 100 "HapMap,freq" 19p13.3 ring finger protein 126 20160 rs2285751 RNF126 55658 19 602852 NM_194460 NP_919442 C/T V68M plus 3225980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 100 "HapMap,freq" 19p13.3 ring finger protein 126 20161 rs2285888 CYP4F12 66002 19 15654235 NM_023944 NP_076433 C/T C188R plus 3226161 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.27 123 "by doubleHit,freq,cluster" 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 20162 rs2285906 GRIN3B 116444 19 959683 XM_290850 XP_290850 A/G A845T plus 3226182 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.11 119 "by cluster,freq" 19p13.3 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3B" 20163 rs2285933 OAS3 4940 12 111849499 NM_006187 NP_006178 C/G S381R minus 3226221 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.15 120 "by doubleHit,freq,cluster" 12q24.2 "2'-5'-oligoadenylate synthetase 3, 100kDa" 20164 rs2285974 HCFC1R1 54985 16 3013241 NM_017885 NP_060355 A/C P92Q minus 3226274 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.13 106 "by cluster,freq" 16p13.3 host cell factor C1 regulator 1 (XPO1 dependant) 20165 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.07 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20166 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20167 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 901 AFFY AfAm 12 1 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20168 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 902 AFFY Caucasian 24 0.04 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20169 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 903 AFFY Asian 12 0.17 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20170 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 904 AFFY CEPH 10 1 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20171 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 3226322 905 AFFY PDpanel 46 0.09 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20172 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 24137264 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20173 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 24137264 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20174 rs2286007 PRKWNK1 65125 12 841552 NM_018979 NP_061852 C/T T665I plus 24137264 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 20175 rs2286199 TBXAS1 6916 7 139168759 NM_001061 NP_001052 C/T A428T minus 3226561 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.02 100 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 20176 rs2286199 TBXAS1 6916 7 139168759 NM_030984 NP_112246 C/T A428T minus 3226561 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.02 100 by freq 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 20177 rs2286520 FOXN1 8456 17 23885947 NM_003593 NP_003584 A/G R411W minus 3227004 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0 100 by freq 17q11-q12 forkhead box N1 20178 rs2286624 CORO1B 57175 11 66962466 NM_020441 NP_065174 A/C R476L plus 3227135 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.02 100 HapMap 11q13.1 "coronin, actin binding protein, 1B" 20179 rs2286624 CORO1B 57175 11 66962466 NM_020441 NP_065174 A/C R476L plus 3227135 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q13.1 "coronin, actin binding protein, 1B" 20180 rs2286672 PLD2 5338 17 4659581 NM_002663 NP_002654 A/G R172C minus 3227201 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.38 123 by freq 17p13.1 phospholipase D2 20181 rs2286677 CACNG5 27091 17 62311250 NM_014404 NP_055219 A/G V194I plus 3227207 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.08 123 "HapMap,freq,cluster" 17q24 "calcium channel, voltage-dependent, gamma subunit 5" 20182 rs2286677 CACNG5 27091 17 62311250 NM_014404 NP_055219 A/G V194I plus 3227207 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 17q24 "calcium channel, voltage-dependent, gamma subunit 5" 20183 rs2286677 CACNG5 27091 17 62311250 NM_014404 NP_055219 A/G V194I plus 24013811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 17q24 "calcium channel, voltage-dependent, gamma subunit 5" 20184 rs2286677 CACNG5 27091 17 62311250 NM_014404 NP_055219 A/G V194I plus 24013811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 17q24 "calcium channel, voltage-dependent, gamma subunit 5" 20185 rs2286677 CACNG5 27091 17 62311250 NM_014404 NP_055219 A/G V194I plus 24013811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 17q24 "calcium channel, voltage-dependent, gamma subunit 5" 20186 rs2286734 NRAP 4892 10 115379438 NM_006175 NP_006166 G/T A612S minus 3227294 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 by freq 10q24-q26 nebulin-related anchoring protein 20187 rs2286734 NRAP 4892 10 115379438 NM_198060 NP_932326 G/T A647S minus 3227294 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 by freq 10q24-q26 nebulin-related anchoring protein 20188 rs2286735 NRAP 4892 10 115379356 NM_006175 NP_006166 C/T A639V minus 24593731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20189 rs2286735 NRAP 4892 10 115379356 NM_006175 NP_006166 C/T A639V minus 24593731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20190 rs2286735 NRAP 4892 10 115379356 NM_006175 NP_006166 C/T A639V minus 24593731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.39 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20191 rs2286735 NRAP 4892 10 115379356 NM_198060 NP_932326 C/T A674V minus 24593731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20192 rs2286735 NRAP 4892 10 115379356 NM_198060 NP_932326 C/T A674V minus 24593731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20193 rs2286735 NRAP 4892 10 115379356 NM_198060 NP_932326 C/T A674V minus 24593731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.39 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 20194 rs2286786 STAB1 23166 3 52522969 NM_015136 NP_055951 C/G G1127R plus 3227362 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.02 100 HapMap 3p21.31 stabilin 1 20195 rs2286786 STAB1 23166 3 52522969 NM_015136 NP_055951 C/G G1127R plus 3227362 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 3p21.31 stabilin 1 20196 rs2286913 RPS6KL1 83694 14 74456329 NM_031464 NP_113652 A/G P121L plus 3227519 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.48 121 "by cluster,freq" 14q24.2 ribosomal protein S6 kinase-like 1 20197 rs2286963 ACADL 33 2 210885556 NM_001608 NP_001599 G/T K333Q plus 3227594 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,submitter,freq" 2q34-q35 "acyl-Coenzyme A dehydrogenase, long chain" 20198 rs2286963 ACADL 33 2 210885556 NM_001608 NP_001599 G/T K333Q plus 24303063 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,submitter,freq" 2q34-q35 "acyl-Coenzyme A dehydrogenase, long chain" 20199 rs2286963 ACADL 33 2 210885556 NM_001608 NP_001599 G/T K333Q plus 24303063 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,submitter,freq" 2q34-q35 "acyl-Coenzyme A dehydrogenase, long chain" 20200 rs2286963 ACADL 33 2 210885556 NM_001608 NP_001599 G/T K333Q plus 24303063 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,submitter,freq" 2q34-q35 "acyl-Coenzyme A dehydrogenase, long chain" 20201 rs2287101 CLECSF13 165530 2 70948137 NM_173535 NP_775806 C/T K564R plus 3227789 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.21 100 "HapMap,freq" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 20202 rs2287101 CLECSF13 165530 2 70948137 NM_173535 NP_775806 C/T K564R plus 3227789 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 100 "HapMap,freq" 2p13.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13" 20203 rs2287174 ANKRD13 88455 12 108936790 NM_033121 NP_149112 C/T L505P plus 3227880 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.05 120 "HapMap,submitter,cluster" 12q24.12 ankyrin repeat domain 13 20204 rs2287174 ANKRD13 88455 12 108936790 NM_033121 NP_149112 C/T L505P plus 3227880 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 "HapMap,submitter,cluster" 12q24.12 ankyrin repeat domain 13 20205 rs2287351 ACACA 31 17 32675736 NM_198834 NP_942131 A/G R875W plus 3228102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20206 rs2287351 ACACA 31 17 32675736 NM_198834 NP_942131 A/G R875W plus 3228102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20207 rs2287351 ACACA 31 17 32675736 NM_198836 NP_942133 A/G R838W plus 3228102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20208 rs2287351 ACACA 31 17 32675736 NM_198836 NP_942133 A/G R838W plus 3228102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20209 rs2287351 ACACA 31 17 32675736 NM_198837 NP_942134 A/G R780W plus 3228102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20210 rs2287351 ACACA 31 17 32675736 NM_198837 NP_942134 A/G R780W plus 3228102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20211 rs2287351 ACACA 31 17 32675736 NM_198838 NP_942135 A/G R760W plus 3228102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20212 rs2287351 ACACA 31 17 32675736 NM_198838 NP_942135 A/G R760W plus 3228102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20213 rs2287351 ACACA 31 17 32675736 NM_198839 NP_942136 A/G R838W plus 3228102 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20214 rs2287351 ACACA 31 17 32675736 NM_198839 NP_942136 A/G R838W plus 3228102 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17q21 acetyl-Coenzyme A carboxylase alpha 20215 rs2287546 SART3 9733 12 107426438 NM_014706 NP_055521 A/C E621D plus 3228369 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 100 HapMap 12q24.1 squamous cell carcinoma antigen recognised by T cells 3 20216 rs2287546 SART3 9733 12 107426438 NM_014706 NP_055521 A/C E621D plus 3228369 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 100 HapMap 12q24.1 squamous cell carcinoma antigen recognised by T cells 3 20217 rs2287558 XRCC5 7520 2 216838357 NM_021141 NP_066964 A/G I508V plus 3228381 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0 100 by freq 2q35 "X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa)" 20218 rs2287579 PLD1 5337 3 172845487 NM_002662 NP_002653 C/T V820M plus 3228411 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.05 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20219 rs2287617 ABCB11 8647 2 169672830 NM_003742 NP_003733 A/G R299K minus 3228463 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 HapMap 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 20220 rs2287617 ABCB11 8647 2 169672830 NM_003742 NP_003733 A/G R299K minus 3228463 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 20221 rs2287622 ABCB11 8647 2 169655835 NM_003742 NP_003733 C/T V444A minus 3228468 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.29 121 "HapMap,doubleHit,freq,cluster" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 20222 rs2287622 ABCB11 8647 2 169655835 NM_003742 NP_003733 C/T V444A minus 5326526 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 121 "HapMap,doubleHit,freq,cluster" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 20223 rs2287622 ABCB11 8647 2 169655835 NM_003742 NP_003733 C/T V444A minus 16339454 1136 PHARMGKB_PMT PA129840880 494 0.43 121 "HapMap,doubleHit,freq,cluster" 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 20224 rs2287669 ANKRD27 84079 19 37802044 NM_032139 NP_115515 A/G S657G minus 3228544 738 YUSUKE JBIC-ALLELE Japanese (752) 922 0.25 123 "by cluster,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 20225 rs2287669 ANKRD27 84079 19 37802044 NM_032139 NP_115515 A/G S657G minus 23637166 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 20226 rs2287669 ANKRD27 84079 19 37802044 NM_032139 NP_115515 A/G S657G minus 23637166 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 20227 rs2287669 ANKRD27 84079 19 37802044 NM_032139 NP_115515 A/G S657G minus 23637166 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 20228 rs2287679 GPATC1 55094 19 38292604 NM_018025 NP_060495 C/T L476P plus 3228565 738 YUSUKE JBIC-ALLELE Japanese (752) 1108 0.43 120 "HapMap,doubleHit,freq,cluster" 19q13.12 G patch domain containing 1 20229 rs2287679 GPATC1 55094 19 38292604 NM_018025 NP_060495 C/T L476P plus 12472236 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,doubleHit,freq,cluster" 19q13.12 G patch domain containing 1 20230 rs2287714 SHD 56961 19 4234059 NM_020209 NP_064594 C/T G138S minus 3228624 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.19 100 HapMap 19p13.3 src homology 2 domain-containing transforming protein D 20231 rs2287714 SHD 56961 19 4234059 NM_020209 NP_064594 C/T G138S minus 3228624 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 100 HapMap 19p13.3 src homology 2 domain-containing transforming protein D 20232 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 3228663 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.02 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20233 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 3228663 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20234 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 15357331 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20235 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 15357331 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.18 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20236 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 15357331 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20237 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 24476331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20238 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 24476331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20239 rs2287749 ADAM19 8728 5 156851428 NM_033274 NP_150377 C/T G660D plus 24476331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 20240 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 3228711 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.17 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20241 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 12675541 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.08 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20242 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 12675541 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20243 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 12675541 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20244 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 12675541 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20245 rs2287780 MTRR 4552 5 7942304 NM_002454 NP_002445 C/T R415C plus 12675541 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.17 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20246 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 3228711 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.17 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20247 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 12675541 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.08 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20248 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 12675541 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20249 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 12675541 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20250 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 12675541 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20251 rs2287780 MTRR 4552 5 7942304 NM_024010 NP_076915 C/T R442C plus 12675541 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.17 118 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 20252 rs2287798 AQP8 343 16 25147306 NM_001169 NP_001160 C/G A260P minus 3228729 738 YUSUKE JBIC-ALLELE Japanese (752) 1246 0.5 123 "by cluster,freq" 16p12 aquaporin 8 20253 rs2287798 AQP8 343 16 25147306 NM_001169 NP_001160 C/G A260P minus 24004952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by cluster,freq" 16p12 aquaporin 8 20254 rs2287798 AQP8 343 16 25147306 NM_001169 NP_001160 C/G A260P minus 24004952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by cluster,freq" 16p12 aquaporin 8 20255 rs2287798 AQP8 343 16 25147306 NM_001169 NP_001160 C/G A260P minus 24004952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 16p12 aquaporin 8 20256 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 3228737 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20257 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 3228737 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20258 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 3228737 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 0.21 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20259 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 3228737 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.14 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20260 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 12449985 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20261 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 23982015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20262 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 23982015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20263 rs2287803 COL5A3 50509 19 9973346 NM_015719 NP_056534 A/G R322G minus 23982015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20264 rs2287813 COL5A3 50509 19 9945292 NM_015719 NP_056534 C/G R1207P minus 3228748 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.38 121 "by doubleHit,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 20265 rs2287870 ITGA2 3673 5 52406846 NM_002203 NP_002194 C/T N927S minus 3228817 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 100 by freq 5q23-q31 "integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)" 20266 rs2287918 ARHGEF18 23370 19 7434734 NM_015318 NP_056133 A/G Q543R plus 3228878 738 YUSUKE JBIC-ALLELE Japanese (752) 906 0.09 121 "by doubleHit,freq,cluster" 19p13.3 rho/rac guanine nucleotide exchange factor (GEF) 18 20267 rs2287918 ARHGEF18 23370 19 7434734 NM_015318 NP_056133 A/G Q543R plus 10930946 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,freq,cluster" 19p13.3 rho/rac guanine nucleotide exchange factor (GEF) 18 20268 rs2287922 RASIP1 54922 19 53924038 NM_017805 NP_060275 A/G R601C plus 3228883 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.05 120 "by cluster,freq" 19q13.33 Ras interacting protein 1 20269 rs2287926 CSPG2 1462 5 82851164 NM_004385 NP_004376 A/G G428D plus 3228889 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.16 100 "HapMap,freq" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 20270 rs2287926 CSPG2 1462 5 82851164 NM_004385 NP_004376 A/G G428D plus 3228889 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 100 "HapMap,freq" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 20271 rs2287932 IQGAP2 10788 5 76005116 NM_006633 NP_006624 G/T R1052I plus 3228898 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.02 123 "HapMap,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 20272 rs2287932 IQGAP2 10788 5 76005116 NM_006633 NP_006624 G/T R1052I plus 3228898 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 20273 rs2287932 IQGAP2 10788 5 76005116 NM_006633 NP_006624 G/T R1052I plus 24189720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 20274 rs2287932 IQGAP2 10788 5 76005116 NM_006633 NP_006624 G/T R1052I plus 24189720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 20275 rs2287932 IQGAP2 10788 5 76005116 NM_006633 NP_006624 G/T R1052I plus 24189720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 20276 rs2287939 AMACR 23600 5 34034640 NM_014324 NP_055139 C/T L201S minus 12675256 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.32 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 20277 rs2287939 AMACR 23600 5 34034640 NM_014324 NP_055139 C/T L201S minus 12675256 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.35 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 20278 rs2287939 AMACR 23600 5 34034640 NM_014324 NP_055139 C/T L201S minus 12675256 776 SNP500CANCER AFR1 African / African-American (24) 46 0.09 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 20279 rs2287939 AMACR 23600 5 34034640 NM_014324 NP_055139 C/T L201S minus 12675256 777 SNP500CANCER HISP1 Hispanic (23) 46 0.46 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 20280 rs2287939 AMACR 23600 5 34034640 NM_014324 NP_055139 C/T L201S minus 12675256 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.3 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 20281 rs2287978 PDPR 55066 16 68737589 NM_017990 NP_060460 A/T Y639F plus 3228964 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.12 100 by freq 16q22.1 pyruvate dehydrogenase phosphatase regulatory subunit 20282 rs2287987 ARTS-1 51752 5 96155291 NM_016442 NP_057526 C/T M349V plus 3228977 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 123 "by cluster,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 20283 rs2287987 ARTS-1 51752 5 96155291 NM_016442 NP_057526 C/T M349V plus 24449153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 "by cluster,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 20284 rs2287987 ARTS-1 51752 5 96155291 NM_016442 NP_057526 C/T M349V plus 24449153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 20285 rs2287987 ARTS-1 51752 5 96155291 NM_016442 NP_057526 C/T M349V plus 24449153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.05 123 "by cluster,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 20286 rs2288200 NEB 4703 2 152229726 NM_004543 NP_004534 A/T D5030V plus 3229263 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,submitter,freq,cluster" 2q22 nebulin 20287 rs2288200 NEB 4703 2 152229726 NM_004543 NP_004534 A/T D5030V plus 24143175 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 2q22 nebulin 20288 rs2288200 NEB 4703 2 152229726 NM_004543 NP_004534 A/T D5030V plus 24143175 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,submitter,freq,cluster" 2q22 nebulin 20289 rs2288200 NEB 4703 2 152229726 NM_004543 NP_004534 A/T D5030V plus 24143175 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 2q22 nebulin 20290 rs2288210 NEB 4703 2 152247584 NM_004543 NP_004534 C/G R4401T plus 24618909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 2q22 nebulin 20291 rs2288210 NEB 4703 2 152247584 NM_004543 NP_004534 C/G R4401T plus 24618909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "by doubleHit,freq,cluster" 2q22 nebulin 20292 rs2288210 NEB 4703 2 152247584 NM_004543 NP_004534 C/G R4401T plus 24618909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,freq,cluster" 2q22 nebulin 20293 rs2288255 BMP2K 55589 4 80144035 NM_017593 NP_060063 C/T G405S minus 3229349 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.24 100 by freq 4q21.23 BMP2 inducible kinase 20294 rs2288255 BMP2K 55589 4 80144035 NM_198892 NP_942595 C/T G405S minus 3229349 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.24 100 by freq 4q21.23 BMP2 inducible kinase 20295 rs2288413 LASS4 79603 19 8232624 NM_024552 NP_078828 A/G G301S plus 3229558 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 20296 rs2288413 LASS4 79603 19 8232624 NM_024552 NP_078828 A/G G301S plus 3229558 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0 100 HapMap 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 20297 rs2288466 CDH9 1007 5 27024085 NM_016279 NP_057363 A/G A38V plus 24361876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20298 rs2288466 CDH9 1007 5 27024085 NM_016279 NP_057363 A/G A38V plus 24361876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20299 rs2288466 CDH9 1007 5 27024085 NM_016279 NP_057363 A/G A38V plus 24361876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20300 rs2288467 CDH9 1007 5 27024181 NM_016279 NP_057363 C/T Y6C plus 24361890 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20301 rs2288467 CDH9 1007 5 27024181 NM_016279 NP_057363 C/T Y6C plus 24361890 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20302 rs2288467 CDH9 1007 5 27024181 NM_016279 NP_057363 C/T Y6C plus 24361890 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 5p14 "cadherin 9, type 2 (T1-cadherin)" 20303 rs2288481 DKKL1 27120 19 54570008 NM_014419 NP_055234 A/G E214K plus 3229665 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.3 121 "HapMap,freq,cluster" 19q13.33 soggy-1 gene 20304 rs2288481 DKKL1 27120 19 54570008 NM_014419 NP_055234 A/G E214K plus 3229665 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 121 "HapMap,freq,cluster" 19q13.33 soggy-1 gene 20305 rs2288481 DKKL1 27120 19 54570008 NM_014419 NP_055234 A/G E214K plus 21528812 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "HapMap,freq,cluster" 19q13.33 soggy-1 gene 20306 rs2288538 ZNF552 79818 19 63011718 NM_024762 NP_079038 C/G W242C minus 3229735 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.17 123 HapMap 19q13.43 zinc finger protein 552 20307 rs2288538 ZNF552 79818 19 63011718 NM_024762 NP_079038 C/G W242C minus 3229735 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 HapMap 19q13.43 zinc finger protein 552 20308 rs2288538 ZNF552 79818 19 63011718 NM_024762 NP_079038 C/G W242C minus 24201008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 19q13.43 zinc finger protein 552 20309 rs2288538 ZNF552 79818 19 63011718 NM_024762 NP_079038 C/G W242C minus 24201008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 HapMap 19q13.43 zinc finger protein 552 20310 rs2288538 ZNF552 79818 19 63011718 NM_024762 NP_079038 C/G W242C minus 24201008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 19q13.43 zinc finger protein 552 20311 rs2288648 FASTK 10922 7 150211956 NM_006712 NP_006703 A/G A436V plus 3229881 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.23 100 by freq 7q35 FAST kinase 20312 rs2288648 FASTK 10922 7 150211956 NM_033015 NP_148936 A/G A295V plus 3229881 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.23 100 by freq 7q35 FAST kinase 20313 rs2288675 ANP32C 23520 4 165476257 NM_012403 NP_036535 A/G R71K minus 3229916 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.13 123 "by submitter,freq" 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 20314 rs2288675 ANP32C 23520 4 165476257 NM_012403 NP_036535 A/G R71K minus 24660475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq" 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 20315 rs2288675 ANP32C 23520 4 165476257 NM_012403 NP_036535 A/G R71K minus 24660475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq" 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 20316 rs2288675 ANP32C 23520 4 165476257 NM_012403 NP_036535 A/G R71K minus 24660475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by submitter,freq" 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 20317 rs2288709 D2LIC 51626 2 43915661 NM_015522 NP_056337 A/G F33S minus 9951356 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20318 rs2288709 D2LIC 51626 2 43915661 NM_015522 NP_056337 A/G F33S minus 24640343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20319 rs2288709 D2LIC 51626 2 43915661 NM_015522 NP_056337 A/G F33S minus 24640343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20320 rs2288709 D2LIC 51626 2 43915661 NM_015522 NP_056337 A/G F33S minus 24640343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20321 rs2288709 D2LIC 51626 2 43915661 NM_016008 NP_057092 A/G F33S minus 9951356 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20322 rs2288709 D2LIC 51626 2 43915661 NM_016008 NP_057092 A/G F33S minus 24640343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20323 rs2288709 D2LIC 51626 2 43915661 NM_016008 NP_057092 A/G F33S minus 24640343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20324 rs2288709 D2LIC 51626 2 43915661 NM_016008 NP_057092 A/G F33S minus 24640343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 20325 rs2288792 SLIT3 6586 5 168133929 NM_003062 NP_003053 A/G R395Q minus 3230061 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "HapMap,freq" 5q35 slit homolog 3 (Drosophila) 20326 rs2288792 SLIT3 6586 5 168133929 NM_003062 NP_003053 A/G R395Q minus 3230061 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 5q35 slit homolog 3 (Drosophila) 20327 rs2288792 SLIT3 6586 5 168133929 NM_003062 NP_003053 A/G R395Q minus 24186098 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 5q35 slit homolog 3 (Drosophila) 20328 rs2288792 SLIT3 6586 5 168133929 NM_003062 NP_003053 A/G R395Q minus 24186098 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5q35 slit homolog 3 (Drosophila) 20329 rs2288792 SLIT3 6586 5 168133929 NM_003062 NP_003053 A/G R395Q minus 24186098 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 5q35 slit homolog 3 (Drosophila) 20330 rs2288846 RFX2 5990 19 5993059 NM_000635 NP_000626 A/G A86T minus 3230124 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.18 100 "HapMap,freq" 19p13.3-p13.2 "regulatory factor X, 2 (influences HLA class II expression)" 20331 rs2288846 RFX2 5990 19 5993059 NM_000635 NP_000626 A/G A86T minus 3230124 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 100 "HapMap,freq" 19p13.3-p13.2 "regulatory factor X, 2 (influences HLA class II expression)" 20332 rs2288846 RFX2 5990 19 5993059 NM_134433 NP_602309 A/G A86T minus 3230124 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.18 100 "HapMap,freq" 19p13.3-p13.2 "regulatory factor X, 2 (influences HLA class II expression)" 20333 rs2288846 RFX2 5990 19 5993059 NM_134433 NP_602309 A/G A86T minus 3230124 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 100 "HapMap,freq" 19p13.3-p13.2 "regulatory factor X, 2 (influences HLA class II expression)" 20334 rs2288868 ZNF577 84765 19 57068319 NM_032679 NP_116068 C/T K239E plus 3230150 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.31 119 "HapMap,doubleHit,freq,cluster" 19q13.41 zinc finger protein 577 20335 rs2288868 ZNF577 84765 19 57068319 NM_032679 NP_116068 C/T K239E plus 12457682 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 119 "HapMap,doubleHit,freq,cluster" 19q13.41 zinc finger protein 577 20336 rs2288904 CTL2 57153 19 10603170 NM_020428 NP_065161 C/T Q154R minus 3230208 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.35 123 "HapMap,doubleHit,freq,cluster" 19p13.1 CTL2 gene 20337 rs2288904 CTL2 57153 19 10603170 NM_020428 NP_065161 C/T Q154R minus 14713316 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,freq,cluster" 19p13.1 CTL2 gene 20338 rs2288904 CTL2 57153 19 10603170 NM_020428 NP_065161 C/T Q154R minus 14713316 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "HapMap,doubleHit,freq,cluster" 19p13.1 CTL2 gene 20339 rs2288920 PRRG2 5639 19 54783610 NM_000951 NP_000942 G/T G116C plus 3230229 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.15 120 "HapMap,doubleHit,freq,cluster" 19q13.33 proline rich Gla (G-carboxyglutamic acid) 2 20340 rs2288920 PRRG2 5639 19 54783610 NM_000951 NP_000942 G/T G116C plus 10925115 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 120 "HapMap,doubleHit,freq,cluster" 19q13.33 proline rich Gla (G-carboxyglutamic acid) 2 20341 rs2289025 ALS2CR19 117583 2 205794726 NM_152526 NP_689739 A/G R193K plus 3230363 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20342 rs2289025 ALS2CR19 117583 2 205794726 NM_152526 NP_689739 A/G R193K plus 3230363 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20343 rs2289025 ALS2CR19 117583 2 205794726 NM_152526 NP_689739 A/G R193K plus 23270073 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20344 rs2289025 ALS2CR19 117583 2 205794726 NM_152526 NP_689739 A/G R193K plus 23270073 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20345 rs2289025 ALS2CR19 117583 2 205794726 NM_152526 NP_689739 A/G R193K plus 23270073 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20346 rs2289025 ALS2CR19 117583 2 205794726 NM_205863 NP_995585 A/G R193K plus 3230363 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20347 rs2289025 ALS2CR19 117583 2 205794726 NM_205863 NP_995585 A/G R193K plus 3230363 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20348 rs2289025 ALS2CR19 117583 2 205794726 NM_205863 NP_995585 A/G R193K plus 23270073 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20349 rs2289025 ALS2CR19 117583 2 205794726 NM_205863 NP_995585 A/G R193K plus 23270073 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20350 rs2289025 ALS2CR19 117583 2 205794726 NM_205863 NP_995585 A/G R193K plus 23270073 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q33.3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19" 20351 rs2289043 UNC5C 8633 4 96463500 NM_003728 NP_003719 C/T M721T minus 3230388 738 YUSUKE JBIC-ALLELE Japanese (752) 1092 0.37 123 "by doubleHit,submitter,freq,cluster" 4q21-q23 unc-5 homolog C (C. elegans) 20352 rs2289043 UNC5C 8633 4 96463500 NM_003728 NP_003719 C/T M721T minus 23919947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 4q21-q23 unc-5 homolog C (C. elegans) 20353 rs2289043 UNC5C 8633 4 96463500 NM_003728 NP_003719 C/T M721T minus 23919947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 4q21-q23 unc-5 homolog C (C. elegans) 20354 rs2289043 UNC5C 8633 4 96463500 NM_003728 NP_003719 C/T M721T minus 23919947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 4q21-q23 unc-5 homolog C (C. elegans) 20355 rs2289080 CHRNG 1146 2 233231683 NM_005199 NP_005190 A/G A152T plus 3230437 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.11 123 "HapMap,freq,cluster" 2q33-q34 "cholinergic receptor, nicotinic, gamma polypeptide" 20356 rs2289080 CHRNG 1146 2 233231683 NM_005199 NP_005190 A/G A152T plus 3230437 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 2q33-q34 "cholinergic receptor, nicotinic, gamma polypeptide" 20357 rs2289080 CHRNG 1146 2 233231683 NM_005199 NP_005190 A/G A152T plus 23286411 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 2q33-q34 "cholinergic receptor, nicotinic, gamma polypeptide" 20358 rs2289080 CHRNG 1146 2 233231683 NM_005199 NP_005190 A/G A152T plus 23286411 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "HapMap,freq,cluster" 2q33-q34 "cholinergic receptor, nicotinic, gamma polypeptide" 20359 rs2289080 CHRNG 1146 2 233231683 NM_005199 NP_005190 A/G A152T plus 23286411 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2q33-q34 "cholinergic receptor, nicotinic, gamma polypeptide" 20360 rs2289170 PIP5K3 200576 2 209041139 NM_015040 NP_055855 A/G R1858Q plus 3230577 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 100 by freq 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 20361 rs2289189 RAB3-GAP150 25782 1 216719600 NM_012414 NP_036546 C/G S1092T plus 3230609 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.08 123 "by cluster,freq" 1q42.11 "rab3 GTPase-activating protein, non-catalytic subunit (150kD)" 20362 rs2289189 RAB3-GAP150 25782 1 216719600 NM_012414 NP_036546 C/G S1092T plus 23864532 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q42.11 "rab3 GTPase-activating protein, non-catalytic subunit (150kD)" 20363 rs2289189 RAB3-GAP150 25782 1 216719600 NM_012414 NP_036546 C/G S1092T plus 23864532 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q42.11 "rab3 GTPase-activating protein, non-catalytic subunit (150kD)" 20364 rs2289189 RAB3-GAP150 25782 1 216719600 NM_012414 NP_036546 C/G S1092T plus 23864532 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 1q42.11 "rab3 GTPase-activating protein, non-catalytic subunit (150kD)" 20365 rs2289235 ITM2C 81618 2 231563673 NM_030926 NP_112188 C/T G53S minus 3230662 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.27 121 "by cluster,freq" 2q37 integral membrane protein 2C 20366 rs2289235 ITM2C 81618 2 231563673 NM_030926 NP_112188 C/T G53S minus 21651974 1303 SEQUENOM CEPH CEPH (92) 92 0.34 121 "by cluster,freq" 2q37 integral membrane protein 2C 20367 rs2289247 NS 26354 3 52702297 NM_014366 NP_055181 C/T V367M minus 3230676 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.5 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20368 rs2289247 NS 26354 3 52702297 NM_014366 NP_055181 C/T V367M minus 10061885 885 TSC-CSHL HapMap-CEPH-30-trios 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20369 rs2289247 NS 26354 3 52702297 NM_014366 NP_055181 C/T V367M minus 10061885 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20370 rs2289247 NS 26354 3 52702297 NM_206825 NP_996561 C/T V355M minus 3230676 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.5 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20371 rs2289247 NS 26354 3 52702297 NM_206825 NP_996561 C/T V355M minus 10061885 885 TSC-CSHL HapMap-CEPH-30-trios 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20372 rs2289247 NS 26354 3 52702297 NM_206825 NP_996561 C/T V355M minus 10061885 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20373 rs2289247 NS 26354 3 52702297 NM_206826 NP_996562 C/T V355M minus 3230676 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.5 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20374 rs2289247 NS 26354 3 52702297 NM_206826 NP_996562 C/T V355M minus 10061885 885 TSC-CSHL HapMap-CEPH-30-trios 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20375 rs2289247 NS 26354 3 52702297 NM_206826 NP_996562 C/T V355M minus 10061885 1303 SEQUENOM CEPH CEPH (92) 92 0.36 121 "HapMap,doubleHit,freq,cluster" 3p21.31 nucleostemin 20376 rs2289366 CCM2 83605 7 44886361 NM_031443 NP_113631 A/G S289N plus 3230820 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 100 by freq 7p13 cerebral cavernous malformation 2 20377 rs2289433 CORIN 10699 4 47680857 NM_006587 NP_006578 A/G C13Y minus 3230917 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.33 120 "by doubleHit,freq,cluster" 4p13-p12 "corin, serine protease" 20378 rs2289491 SLC9A9 285195 3 144468415 NM_173653 NP_775924 C/T I589V plus 3230999 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.02 123 "by submitter,freq,cluster" 3q23-q24 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 9" 20379 rs2289491 SLC9A9 285195 3 144468415 NM_173653 NP_775924 C/T I589V plus 23876036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 3q23-q24 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 9" 20380 rs2289491 SLC9A9 285195 3 144468415 NM_173653 NP_775924 C/T I589V plus 23876036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 3q23-q24 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 9" 20381 rs2289491 SLC9A9 285195 3 144468415 NM_173653 NP_775924 C/T I589V plus 23876036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 3q23-q24 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 9" 20382 rs2289520 SERPINB5 5268 18 59311300 NM_002639 NP_002630 C/G V187L plus 3231042 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.24 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 20383 rs2289520 SERPINB5 5268 18 59311300 NM_002639 NP_002630 C/G V187L plus 23499116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 20384 rs2289520 SERPINB5 5268 18 59311300 NM_002639 NP_002630 C/G V187L plus 23499116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 20385 rs2289520 SERPINB5 5268 18 59311300 NM_002639 NP_002630 C/G V187L plus 23499116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5" 20386 rs2289541 CARD14 79092 17 75794003 NM_024110 NP_077015 A/G R883H plus 3231064 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.1 123 "HapMap,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 20387 rs2289541 CARD14 79092 17 75794003 NM_024110 NP_077015 A/G R883H plus 3231064 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 20388 rs2289541 CARD14 79092 17 75794003 NM_024110 NP_077015 A/G R883H plus 24123041 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 20389 rs2289541 CARD14 79092 17 75794003 NM_024110 NP_077015 A/G R883H plus 24123041 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "HapMap,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 20390 rs2289541 CARD14 79092 17 75794003 NM_024110 NP_077015 A/G R883H plus 24123041 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,freq,cluster" 17q25 "caspase recruitment domain family, member 14" 20391 rs2289593 DPYSL2 1808 8 26537614 NM_001386 NP_001377 C/T A118T minus 3231139 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.03 123 "by cluster,freq" 8p22-p21 dihydropyrimidinase-like 2 20392 rs2289593 DPYSL2 1808 8 26537614 NM_001386 NP_001377 C/T A118T minus 24078499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p22-p21 dihydropyrimidinase-like 2 20393 rs2289593 DPYSL2 1808 8 26537614 NM_001386 NP_001377 C/T A118T minus 24078499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8p22-p21 dihydropyrimidinase-like 2 20394 rs2289593 DPYSL2 1808 8 26537614 NM_001386 NP_001377 C/T A118T minus 24078499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 8p22-p21 dihydropyrimidinase-like 2 20395 rs2289602 RNF157 114804 17 71681435 XM_290732 XP_290732 A/C P620H minus 3231155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17q25.3 ring finger protein 157 20396 rs2289602 RNF157 114804 17 71681435 XM_290732 XP_290732 A/C P620H minus 3231155 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 738 0 100 HapMap 17q25.3 ring finger protein 157 20397 rs2289629 SSH2 85464 17 24984029 NM_033389 NP_203747 C/T S743L minus 3231196 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.1 123 "HapMap,submitter,freq,cluster" 17q11.2 slingshot homolog 2 (Drosophila) 20398 rs2289629 SSH2 85464 17 24984029 NM_033389 NP_203747 C/T S743L minus 3231196 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,submitter,freq,cluster" 17q11.2 slingshot homolog 2 (Drosophila) 20399 rs2289629 SSH2 85464 17 24984029 NM_033389 NP_203747 C/T S743L minus 24705659 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 17q11.2 slingshot homolog 2 (Drosophila) 20400 rs2289629 SSH2 85464 17 24984029 NM_033389 NP_203747 C/T S743L minus 24705659 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 17q11.2 slingshot homolog 2 (Drosophila) 20401 rs2289629 SSH2 85464 17 24984029 NM_033389 NP_203747 C/T S743L minus 24705659 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 17q11.2 slingshot homolog 2 (Drosophila) 20402 rs2289651 ZNF510 22869 9 96616626 XM_376895 XP_376895 A/G Q43R minus 3231227 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.32 123 "HapMap,freq,cluster" 9q22.33 zinc finger protein 510 20403 rs2289651 ZNF510 22869 9 96616626 XM_376895 XP_376895 A/G Q43R minus 3231227 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 9q22.33 zinc finger protein 510 20404 rs2289651 ZNF510 22869 9 96616626 XM_376895 XP_376895 A/G Q43R minus 24169245 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q22.33 zinc finger protein 510 20405 rs2289651 ZNF510 22869 9 96616626 XM_376895 XP_376895 A/G Q43R minus 24169245 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 9q22.33 zinc finger protein 510 20406 rs2289651 ZNF510 22869 9 96616626 XM_376895 XP_376895 A/G Q43R minus 24169245 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 9q22.33 zinc finger protein 510 20407 rs2289664 CDH2 1000 18 23786302 NM_001792 NP_001783 C/T N845S plus 3231241 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.02 100 "HapMap,freq" 18q11.2 "cadherin 2, type 1, N-cadherin (neuronal)" 20408 rs2289664 CDH2 1000 18 23786302 NM_001792 NP_001783 C/T N845S plus 3231241 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 100 "HapMap,freq" 18q11.2 "cadherin 2, type 1, N-cadherin (neuronal)" 20409 rs2289719 MICAL3 57553 22 16743205 XM_032997 XP_032997 C/T R745Q plus 3231321 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 22q11.21 flavoprotein oxidoreductase MICAL3 20410 rs2289741 RPAP1 26015 15 39607492 NM_015540 NP_056355 C/T R429Q plus 3231352 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.21 123 "HapMap,doubleHit,freq,cluster" 15q14 RNA polymerase II associated protein 1 20411 rs2289741 RPAP1 26015 15 39607492 NM_015540 NP_056355 C/T R429Q plus 10778461 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,freq,cluster" 15q14 RNA polymerase II associated protein 1 20412 rs2289741 RPAP1 26015 15 39607492 NM_015540 NP_056355 C/T R429Q plus 23956125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 15q14 RNA polymerase II associated protein 1 20413 rs2289741 RPAP1 26015 15 39607492 NM_015540 NP_056355 C/T R429Q plus 23956125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,doubleHit,freq,cluster" 15q14 RNA polymerase II associated protein 1 20414 rs2289741 RPAP1 26015 15 39607492 NM_015540 NP_056355 C/T R429Q plus 23956125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 15q14 RNA polymerase II associated protein 1 20415 rs2289838 HAPIP 8997 3 125664123 NM_003947 NP_003938 G/T E1326D plus 3231484 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0 100 by freq 3q21.2 huntingtin-associated protein interacting protein (duo) 20416 rs2289884 NLN 57486 5 65119991 NM_020726 NP_065777 C/T S417G minus 3231555 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 "HapMap,submitter" 5q12.3 neurolysin (metallopeptidase M3 family) 20417 rs2289884 NLN 57486 5 65119991 NM_020726 NP_065777 C/T S417G minus 3231555 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,submitter" 5q12.3 neurolysin (metallopeptidase M3 family) 20418 rs2289886 ENPP2 5168 8 120661587 NM_006209 NP_006200 C/T N629S plus 3231561 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.05 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 20419 rs2289886 ENPP2 5168 8 120661587 NM_006209 NP_006200 C/T N629S plus 23973426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 20420 rs2289886 ENPP2 5168 8 120661587 NM_006209 NP_006200 C/T N629S plus 23973426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 20421 rs2289886 ENPP2 5168 8 120661587 NM_006209 NP_006200 C/T N629S plus 23973426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 20422 rs2289909 ATP12A 479 13 24181596 NM_001676 NP_001667 C/T P866L plus 3231587 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.04 100 by freq 13q11-q12.1 "ATPase, H+/K+ transporting, nongastric, alpha polypeptide" 20423 rs2289912 TNRC15 26058 2 233485058 NM_015575 NP_056390 G/T P460T minus 3231592 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.29 100 by freq 2q37.1 trinucleotide repeat containing 15 20424 rs2289953 TBC1D8 11138 2 101115244 NM_007063 NP_008994 C/T T74A plus 3231641 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 121 "HapMap,doubleHit,freq,cluster" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 20425 rs2290041 PRKWNK4 65266 17 38200846 NM_032387 NP_115763 A/G P961S minus 3231763 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.03 100 by freq 17q21-q22 "protein kinase, lysine deficient 4" 20426 rs2290057 MORC 27136 3 110186277 NM_014429 NP_055244 C/T S767N plus 3231786 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.34 120 "by cluster,freq" 3q13 microrchidia homolog (mouse) 20427 rs2290130 B3GNT7 93010 2 232088632 NM_145236 NP_660279 C/T V233I minus 3231882 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.23 123 "HapMap,freq,cluster" 2q37.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7" 20428 rs2290130 B3GNT7 93010 2 232088632 NM_145236 NP_660279 C/T V233I minus 3231882 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,freq,cluster" 2q37.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7" 20429 rs2290130 B3GNT7 93010 2 232088632 NM_145236 NP_660279 C/T V233I minus 24278246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 34 0.29 123 "HapMap,freq,cluster" 2q37.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7" 20430 rs2290130 B3GNT7 93010 2 232088632 NM_145236 NP_660279 C/T V233I minus 24278246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.17 123 "HapMap,freq,cluster" 2q37.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7" 20431 rs2290130 B3GNT7 93010 2 232088632 NM_145236 NP_660279 C/T V233I minus 24278246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "HapMap,freq,cluster" 2q37.1 "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7" 20432 rs2290178 GPR97 222487 16 56277087 NM_170776 NP_740746 A/G A430T plus 3231956 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 123 "HapMap,freq,cluster" 16q13 G protein-coupled receptor 97 20433 rs2290178 GPR97 222487 16 56277087 NM_170776 NP_740746 A/G A430T plus 3231956 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 16q13 G protein-coupled receptor 97 20434 rs2290178 GPR97 222487 16 56277087 NM_170776 NP_740746 A/G A430T plus 24077592 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 16q13 G protein-coupled receptor 97 20435 rs2290178 GPR97 222487 16 56277087 NM_170776 NP_740746 A/G A430T plus 24077592 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 16q13 G protein-coupled receptor 97 20436 rs2290178 GPR97 222487 16 56277087 NM_170776 NP_740746 A/G A430T plus 24077592 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 16q13 G protein-coupled receptor 97 20437 rs2290182 CKLFSF2 146225 16 65171509 NM_144673 NP_653274 A/G I122T minus 3231962 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.32 123 "by cluster,freq" 16q22.1 chemokine-like factor super family 2 20438 rs2290182 CKLFSF2 146225 16 65171509 NM_144673 NP_653274 A/G I122T minus 23757755 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 16q22.1 chemokine-like factor super family 2 20439 rs2290182 CKLFSF2 146225 16 65171509 NM_144673 NP_653274 A/G I122T minus 23757755 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 16q22.1 chemokine-like factor super family 2 20440 rs2290182 CKLFSF2 146225 16 65171509 NM_144673 NP_653274 A/G I122T minus 23757755 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 16q22.1 chemokine-like factor super family 2 20441 rs2290207 CTEN 84951 17 35894270 NM_032865 NP_116254 A/G S498N minus 3231993 738 YUSUKE JBIC-ALLELE Japanese (752) 906 0.42 123 "by submitter,freq,cluster" 17q21.2 C-terminal tensin-like 20442 rs2290207 CTEN 84951 17 35894270 NM_032865 NP_116254 A/G S498N minus 24096286 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 17q21.2 C-terminal tensin-like 20443 rs2290207 CTEN 84951 17 35894270 NM_032865 NP_116254 A/G S498N minus 24096286 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 17q21.2 C-terminal tensin-like 20444 rs2290207 CTEN 84951 17 35894270 NM_032865 NP_116254 A/G S498N minus 24096286 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by submitter,freq,cluster" 17q21.2 C-terminal tensin-like 20445 rs2290228 CALU 813 7 127982599 NM_001219 NP_001210 C/T R4Q minus 3232025 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.21 120 "by cluster,freq" 7q32 calumenin 20446 rs2290228 CALU 813 7 127982599 NM_001219 NP_001210 C/T R4Q minus 14686379 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 7q32 calumenin 20447 rs2290237 RBP5 83758 12 7168510 NM_031491 NP_113679 A/T M115L minus 3232036 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.17 100 by freq 12p13.31 "retinol binding protein 5, cellular" 20448 rs2290272 SLC28A1 9154 15 83248435 NM_004213 NP_004204 C/T V189I minus 3232098 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.41 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 20449 rs2290272 SLC28A1 9154 15 83248435 NM_004213 NP_004204 C/T V189I minus 12580286 895 PHARMGKB_PMT PA128336060 490 0.26 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 20450 rs2290272 SLC28A1 9154 15 83248435 NM_004213 NP_004204 C/T V189I minus 24366911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 20451 rs2290272 SLC28A1 9154 15 83248435 NM_004213 NP_004204 C/T V189I minus 24366911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 20452 rs2290272 SLC28A1 9154 15 83248435 NM_004213 NP_004204 C/T V189I minus 24366911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 20453 rs2290302 TTLL3 26140 3 9845777 NM_015644 NP_056459 A/C N206H plus 3232143 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.06 100 HapMap 3p25.3 "tubulin tyrosine ligase-like family, member 3" 20454 rs2290302 TTLL3 26140 3 9845777 NM_015644 NP_056459 A/C N206H plus 3232143 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 100 HapMap 3p25.3 "tubulin tyrosine ligase-like family, member 3" 20455 rs2290305 TTLL3 26140 3 9846030 NM_015644 NP_056459 G/T M290R plus 3232146 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 121 "by doubleHit,submitter,freq,cluster" 3p25.3 "tubulin tyrosine ligase-like family, member 3" 20456 rs2290344 PIGB 9488 15 53407088 NM_004855 NP_004846 A/G M162T minus 3232196 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 100 "HapMap,freq" 15q21-q22 "phosphatidylinositol glycan, class B" 20457 rs2290386 PKD1L1 168507 7 47626077 NM_138295 NP_612152 C/T E2410K plus 3232245 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.2 123 "HapMap,submitter,freq" 7p12.3 polycystic kidney disease 1 like 1 20458 rs2290386 PKD1L1 168507 7 47626077 NM_138295 NP_612152 C/T E2410K plus 3232245 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq" 7p12.3 polycystic kidney disease 1 like 1 20459 rs2290386 PKD1L1 168507 7 47626077 NM_138295 NP_612152 C/T E2410K plus 24669500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq" 7p12.3 polycystic kidney disease 1 like 1 20460 rs2290386 PKD1L1 168507 7 47626077 NM_138295 NP_612152 C/T E2410K plus 24669500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,submitter,freq" 7p12.3 polycystic kidney disease 1 like 1 20461 rs2290386 PKD1L1 168507 7 47626077 NM_138295 NP_612152 C/T E2410K plus 24669500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,submitter,freq" 7p12.3 polycystic kidney disease 1 like 1 20462 rs2290427 LTBP1 4052 2 33416790 NM_000627 NP_000618 A/C P684Q plus 3232299 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20463 rs2290427 LTBP1 4052 2 33416790 NM_000627 NP_000618 A/C P684Q plus 3232299 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20464 rs2290427 LTBP1 4052 2 33416790 NM_000627 NP_000618 A/C P684Q plus 23199608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20465 rs2290427 LTBP1 4052 2 33416790 NM_000627 NP_000618 A/C P684Q plus 23199608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20466 rs2290427 LTBP1 4052 2 33416790 NM_000627 NP_000618 A/C P684Q plus 23199608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20467 rs2290427 LTBP1 4052 2 33416790 NM_206943 NP_996826 A/C P1010Q plus 3232299 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20468 rs2290427 LTBP1 4052 2 33416790 NM_206943 NP_996826 A/C P1010Q plus 3232299 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20469 rs2290427 LTBP1 4052 2 33416790 NM_206943 NP_996826 A/C P1010Q plus 23199608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20470 rs2290427 LTBP1 4052 2 33416790 NM_206943 NP_996826 A/C P1010Q plus 23199608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20471 rs2290427 LTBP1 4052 2 33416790 NM_206943 NP_996826 A/C P1010Q plus 23199608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2p22-p21 latent transforming growth factor beta binding protein 1 20472 rs2290472 MATN2 4147 8 99012774 NM_002380 NP_002371 C/T T187M plus 3232377 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 123 by freq 8q22 matrilin 2 20473 rs2290472 MATN2 4147 8 99012774 NM_002380 NP_002371 C/T T187M plus 24504222 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 8q22 matrilin 2 20474 rs2290472 MATN2 4147 8 99012774 NM_002380 NP_002371 C/T T187M plus 24504222 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8q22 matrilin 2 20475 rs2290472 MATN2 4147 8 99012774 NM_002380 NP_002371 C/T T187M plus 24504222 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 8q22 matrilin 2 20476 rs2290472 MATN2 4147 8 99012774 NM_030583 NP_085072 C/T T187M plus 3232377 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 123 by freq 8q22 matrilin 2 20477 rs2290472 MATN2 4147 8 99012774 NM_030583 NP_085072 C/T T187M plus 24504222 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 8q22 matrilin 2 20478 rs2290472 MATN2 4147 8 99012774 NM_030583 NP_085072 C/T T187M plus 24504222 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8q22 matrilin 2 20479 rs2290472 MATN2 4147 8 99012774 NM_030583 NP_085072 C/T T187M plus 24504222 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 8q22 matrilin 2 20480 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.13 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20481 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 901 AFFY AfAm 10 0.1 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20482 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 902 AFFY Caucasian 20 0.15 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20483 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 903 AFFY Asian 12 0.08 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20484 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 904 AFFY CEPH 12 1 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20485 rs2290480 PLD1 5337 3 172887180 NM_002662 NP_002653 A/C A622S plus 3232391 905 AFFY PDpanel 38 0.08 100 by freq 3q26 "phospholipase D1, phophatidylcholine-specific" 20486 rs2290522 COL14A1 7373 8 121423857 XM_044622 XP_044622 C/T L1600F plus 3232448 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 8q23 "collagen, type XIV, alpha 1 (undulin)" 20487 rs2290532 OSBPL10 114884 3 31764586 NM_017784 NP_060254 C/T N254D plus 3232459 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 3p22.3 oxysterol binding protein-like 10 20488 rs2290532 OSBPL10 114884 3 31764586 NM_017784 NP_060254 C/T N254D plus 11537585 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 3p22.3 oxysterol binding protein-like 10 20489 rs2290532 OSBPL10 114884 3 31764586 NM_017784 NP_060254 C/T N254D plus 24345602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p22.3 oxysterol binding protein-like 10 20490 rs2290532 OSBPL10 114884 3 31764586 NM_017784 NP_060254 C/T N254D plus 24345602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 3p22.3 oxysterol binding protein-like 10 20491 rs2290532 OSBPL10 114884 3 31764586 NM_017784 NP_060254 C/T N254D plus 24345602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 3p22.3 oxysterol binding protein-like 10 20492 rs2290553 SPTBN5 51332 15 39946582 NM_016642 NP_057726 C/T R2116Q plus 24389410 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 20493 rs2290553 SPTBN5 51332 15 39946582 NM_016642 NP_057726 C/T R2116Q plus 24389410 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 20494 rs2290553 SPTBN5 51332 15 39946582 NM_016642 NP_057726 C/T R2116Q plus 24389410 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 15q21 "spectrin, beta, non-erythrocytic 5" 20495 rs2290558 SPTBN5 51332 15 39955626 NM_016642 NP_057726 C/G R1367T plus 3232496 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.02 123 "HapMap,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20496 rs2290558 SPTBN5 51332 15 39955626 NM_016642 NP_057726 C/G R1367T plus 3232496 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20497 rs2290558 SPTBN5 51332 15 39955626 NM_016642 NP_057726 C/G R1367T plus 23957591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20498 rs2290558 SPTBN5 51332 15 39955626 NM_016642 NP_057726 C/G R1367T plus 23957591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20499 rs2290558 SPTBN5 51332 15 39955626 NM_016642 NP_057726 C/G R1367T plus 23957591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20500 rs2290559 SPTBN5 51332 15 39955692 NM_016642 NP_057726 C/T R1345H plus 3232497 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.07 123 "HapMap,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20501 rs2290559 SPTBN5 51332 15 39955692 NM_016642 NP_057726 C/T R1345H plus 12323932 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.28 123 "HapMap,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20502 rs2290559 SPTBN5 51332 15 39955692 NM_016642 NP_057726 C/T R1345H plus 24389517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20503 rs2290559 SPTBN5 51332 15 39955692 NM_016642 NP_057726 C/T R1345H plus 24389517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20504 rs2290559 SPTBN5 51332 15 39955692 NM_016642 NP_057726 C/T R1345H plus 24389517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 15q21 "spectrin, beta, non-erythrocytic 5" 20505 rs2290610 IL5RA 3568 3 3114957 NM_000564 NP_000555 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20506 rs2290610 IL5RA 3568 3 3114957 NM_000564 NP_000555 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20507 rs2290610 IL5RA 3568 3 3114957 NM_000564 NP_000555 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20508 rs2290610 IL5RA 3568 3 3114957 NM_000564 NP_000555 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20509 rs2290610 IL5RA 3568 3 3114957 NM_000564 NP_000555 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20510 rs2290610 IL5RA 3568 3 3114957 NM_175724 NP_783851 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20511 rs2290610 IL5RA 3568 3 3114957 NM_175724 NP_783851 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20512 rs2290610 IL5RA 3568 3 3114957 NM_175724 NP_783851 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20513 rs2290610 IL5RA 3568 3 3114957 NM_175724 NP_783851 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20514 rs2290610 IL5RA 3568 3 3114957 NM_175724 NP_783851 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20515 rs2290610 IL5RA 3568 3 3114957 NM_175725 NP_783852 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20516 rs2290610 IL5RA 3568 3 3114957 NM_175725 NP_783852 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20517 rs2290610 IL5RA 3568 3 3114957 NM_175725 NP_783852 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20518 rs2290610 IL5RA 3568 3 3114957 NM_175725 NP_783852 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20519 rs2290610 IL5RA 3568 3 3114957 NM_175725 NP_783852 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20520 rs2290610 IL5RA 3568 3 3114957 NM_175726 NP_783853 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20521 rs2290610 IL5RA 3568 3 3114957 NM_175726 NP_783853 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20522 rs2290610 IL5RA 3568 3 3114957 NM_175726 NP_783853 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20523 rs2290610 IL5RA 3568 3 3114957 NM_175726 NP_783853 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20524 rs2290610 IL5RA 3568 3 3114957 NM_175726 NP_783853 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20525 rs2290610 IL5RA 3568 3 3114957 NM_175727 NP_783854 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20526 rs2290610 IL5RA 3568 3 3114957 NM_175727 NP_783854 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20527 rs2290610 IL5RA 3568 3 3114957 NM_175727 NP_783854 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20528 rs2290610 IL5RA 3568 3 3114957 NM_175727 NP_783854 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20529 rs2290610 IL5RA 3568 3 3114957 NM_175727 NP_783854 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20530 rs2290610 IL5RA 3568 3 3114957 NM_175728 NP_783855 A/G I129V minus 3232565 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20531 rs2290610 IL5RA 3568 3 3114957 NM_175728 NP_783855 A/G I129V minus 11539255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20532 rs2290610 IL5RA 3568 3 3114957 NM_175728 NP_783855 A/G I129V minus 24276912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20533 rs2290610 IL5RA 3568 3 3114957 NM_175728 NP_783855 A/G I129V minus 24276912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20534 rs2290610 IL5RA 3568 3 3114957 NM_175728 NP_783855 A/G I129V minus 24276912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 3p26-p24 "interleukin 5 receptor, alpha" 20535 rs2290723 DRIM 27340 12 100182599 NM_014503 NP_055318 A/G M120T minus 3232730 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12q23 down-regulated in metastasis 20536 rs2290788 RBM19 9904 12 112840555 NM_016196 NP_057280 A/G I623T plus 23355766 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 12q24.21 RNA binding motif protein 19 20537 rs2290788 RBM19 9904 12 112840555 NM_016196 NP_057280 A/G I623T plus 23355766 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 12q24.21 RNA binding motif protein 19 20538 rs2290788 RBM19 9904 12 112840555 NM_016196 NP_057280 A/G I623T plus 23355766 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 12q24.21 RNA binding motif protein 19 20539 rs2290789 RBM19 9904 12 112840597 NM_016196 NP_057280 C/T H609R plus 23355776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 12q24.21 RNA binding motif protein 19 20540 rs2290789 RBM19 9904 12 112840597 NM_016196 NP_057280 C/T H609R plus 23355776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 12q24.21 RNA binding motif protein 19 20541 rs2290789 RBM19 9904 12 112840597 NM_016196 NP_057280 C/T H609R plus 23355776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 12q24.21 RNA binding motif protein 19 20542 rs2290846 LRBA 987 4 151556685 NM_006726 NP_006717 A/G S2809L plus 3232893 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.29 123 "by submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 20543 rs2290846 LRBA 987 4 151556685 NM_006726 NP_006717 A/G S2809L plus 24178587 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 20544 rs2290846 LRBA 987 4 151556685 NM_006726 NP_006717 A/G S2809L plus 24178587 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 20545 rs2290846 LRBA 987 4 151556685 NM_006726 NP_006717 A/G S2809L plus 24178587 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by submitter,freq" 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 20546 rs2290959 ACY-3 91703 11 67166890 NM_080658 NP_542389 A/G V281M minus 3233060 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.06 123 by freq 11q13.1 aspartoacylase-3 20547 rs2290959 ACY-3 91703 11 67166890 NM_080658 NP_542389 A/G V281M minus 24175347 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q13.1 aspartoacylase-3 20548 rs2290959 ACY-3 91703 11 67166890 NM_080658 NP_542389 A/G V281M minus 24175347 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q13.1 aspartoacylase-3 20549 rs2290959 ACY-3 91703 11 67166890 NM_080658 NP_542389 A/G V281M minus 24175347 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q13.1 aspartoacylase-3 20550 rs2290971 ERP70 9601 7 148149740 NM_004911 NP_004902 A/G T173M plus 3233080 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.05 100 by freq 7q35 "protein disulfide isomerase related protein (calcium-binding protein, intestinal-related)" 20551 rs2291087 ITGB5 3693 3 125998188 NM_002213 NP_002204 C/T N477S plus 23673373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 3q21.2 "integrin, beta 5" 20552 rs2291087 ITGB5 3693 3 125998188 NM_002213 NP_002204 C/T N477S plus 23673373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 3q21.2 "integrin, beta 5" 20553 rs2291087 ITGB5 3693 3 125998188 NM_002213 NP_002204 C/T N477S plus 23673373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 3q21.2 "integrin, beta 5" 20554 rs2291090 ITGB5 3693 3 125998336 NM_002213 NP_002204 A/C L428V plus 23673375 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 3q21.2 "integrin, beta 5" 20555 rs2291090 ITGB5 3693 3 125998336 NM_002213 NP_002204 A/C L428V plus 23673375 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 3q21.2 "integrin, beta 5" 20556 rs2291090 ITGB5 3693 3 125998336 NM_002213 NP_002204 A/C L428V plus 23673375 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 3q21.2 "integrin, beta 5" 20557 rs2291110 FCHSD1 89848 5 141004377 NM_033449 NP_258260 A/C S530Y minus 3233273 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 100 HapMap 5q31.3 FCH and double SH3 domains 1 20558 rs2291110 FCHSD1 89848 5 141004377 NM_033449 NP_258260 A/C S530Y minus 3233273 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 100 HapMap 5q31.3 FCH and double SH3 domains 1 20559 rs2291116 PSMD9 5715 12 120795447 NM_002813 NP_002804 A/G T74I minus 3233288 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 20560 rs2291116 PSMD9 5715 12 120795447 NM_002813 NP_002804 A/G T74I minus 23936236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 20561 rs2291116 PSMD9 5715 12 120795447 NM_002813 NP_002804 A/G T74I minus 23936236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 20562 rs2291116 PSMD9 5715 12 120795447 NM_002813 NP_002804 A/G T74I minus 23936236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 12q24.31-q24.32 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" 20563 rs2291157 EVC 2121 4 5839093 NM_014556 NP_055371 G/T Q74P minus 3233347 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.12 100 "by submitter,freq" 4p16 Ellis van Creveld syndrome 20564 rs2291157 EVC 2121 4 5839093 NM_153717 NP_714928 G/T Q74P minus 3233347 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.12 100 "by submitter,freq" 4p16 Ellis van Creveld syndrome 20565 rs2291182 NYD-SP26 85438 4 71382408 NM_033122 NP_149113 G/T W298G plus 3233374 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.21 100 "by submitter,freq" 4q13.3 testis development protein NYD-SP26 20566 rs2291256 GOLGA3 2802 12 132003673 NM_005895 NP_005886 A/G G70E minus 3233469 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.16 123 "by cluster,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 20567 rs2291256 GOLGA3 2802 12 132003673 NM_005895 NP_005886 A/G G70E minus 24039084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by cluster,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 20568 rs2291256 GOLGA3 2802 12 132003673 NM_005895 NP_005886 A/G G70E minus 24039084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 20569 rs2291256 GOLGA3 2802 12 132003673 NM_005895 NP_005886 A/G G70E minus 24039084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by cluster,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 20570 rs2291260 GOLGA3 2802 12 131967762 NM_005895 NP_005886 A/G K1185R minus 3233474 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.22 121 "by cluster,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 20571 rs2291280 MYO9A 4649 15 69907294 NM_006901 NP_008832 C/T I2390V plus 3233499 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.21 123 "HapMap,submitter,freq,cluster" 15q22-q23 myosin IXA 20572 rs2291280 MYO9A 4649 15 69907294 NM_006901 NP_008832 C/T I2390V plus 3233499 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,freq,cluster" 15q22-q23 myosin IXA 20573 rs2291280 MYO9A 4649 15 69907294 NM_006901 NP_008832 C/T I2390V plus 24046367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 15q22-q23 myosin IXA 20574 rs2291280 MYO9A 4649 15 69907294 NM_006901 NP_008832 C/T I2390V plus 24046367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 15q22-q23 myosin IXA 20575 rs2291280 MYO9A 4649 15 69907294 NM_006901 NP_008832 C/T I2390V plus 24046367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 15q22-q23 myosin IXA 20576 rs2291288 CENTD2 116985 11 72074848 NM_015242 NP_056057 A/C V1168L plus 3233507 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 11q13.3 "centaurin, delta 2" 20577 rs2291288 CENTD2 116985 11 72074848 NM_139181 NP_631920 A/C V1163L plus 3233507 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 11q13.3 "centaurin, delta 2" 20578 rs2291310 TTN 7273 2 179449264 NM_133379 NP_596870 C/T S3419N plus 9985285 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20579 rs2291310 TTN 7273 2 179449264 NM_133379 NP_596870 C/T S3419N plus 24162036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20580 rs2291310 TTN 7273 2 179449264 NM_133379 NP_596870 C/T S3419N plus 24162036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20581 rs2291310 TTN 7273 2 179449264 NM_133379 NP_596870 C/T S3419N plus 24162036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20582 rs2291311 TTN 7273 2 179454967 NM_133379 NP_596870 C/T V3261M plus 3233538 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20583 rs2291311 TTN 7273 2 179454967 NM_133379 NP_596870 C/T V3261M plus 16856112 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20584 rs2291311 TTN 7273 2 179454967 NM_133379 NP_596870 C/T V3261M plus 24162054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20585 rs2291311 TTN 7273 2 179454967 NM_133379 NP_596870 C/T V3261M plus 24162054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20586 rs2291311 TTN 7273 2 179454967 NM_133379 NP_596870 C/T V3261M plus 24162054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 2q31 titin 20587 rs2291381 MRPL3 11222 3 132671272 NM_007208 NP_009139 C/T M261T minus 3233630 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 100 "HapMap,submitter" 3q21-q23 mitochondrial ribosomal protein L3 20588 rs2291381 MRPL3 11222 3 132671272 NM_007208 NP_009139 C/T M261T minus 3233630 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 100 "HapMap,submitter" 3q21-q23 mitochondrial ribosomal protein L3 20589 rs2291388 SYTL3 94120 6 159154845 XM_087804 XP_087804 C/T V540I minus 3233638 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 100 by freq 6q25.3 synaptotagmin-like 3 20590 rs2291442 PC-LKC 54825 5 175950061 NM_017675 NP_060145 A/G T1128M minus 3233713 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.3 100 "HapMap,freq" 5q35.3 protocadherin LKC 20591 rs2291442 PC-LKC 54825 5 175950061 NM_017675 NP_060145 A/G T1128M minus 3233713 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.27 100 "HapMap,freq" 5q35.3 protocadherin LKC 20592 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.33 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20593 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.08 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20594 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 901 AFFY AfAm 10 0.1 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20595 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 902 AFFY Caucasian 24 0.13 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20596 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 903 AFFY Asian 12 0.42 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20597 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 904 AFFY CEPH 12 0.33 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20598 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 3233797 905 AFFY PDpanel 46 0.28 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20599 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 23747287 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20600 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 23747287 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20601 rs2291498 RAP140 23272 3 56633911 NM_015224 NP_056039 A/G I998V minus 23747287 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 3p21.31 retinoblastoma-associated protein 140 20602 rs2291516 RGL3 57139 19 11369177 XM_290867 XP_290867 A/G R615C plus 3233826 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.31 100 by freq 19p13.2 ral guanine nucleotide dissociation stimulator-like 3 20603 rs2291569 FLNC 2318 7 128082685 NM_001458 NP_001449 A/G R1547Q plus 3233900 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.15 123 by freq 7q32-q35 "filamin C, gamma (actin binding protein 280)" 20604 rs2291569 FLNC 2318 7 128082685 NM_001458 NP_001449 A/G R1547Q plus 24447614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q32-q35 "filamin C, gamma (actin binding protein 280)" 20605 rs2291569 FLNC 2318 7 128082685 NM_001458 NP_001449 A/G R1547Q plus 24447614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 7q32-q35 "filamin C, gamma (actin binding protein 280)" 20606 rs2291569 FLNC 2318 7 128082685 NM_001458 NP_001449 A/G R1547Q plus 24447614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q32-q35 "filamin C, gamma (actin binding protein 280)" 20607 rs2291604 NYD-SP20 84690 17 3299188 NM_032598 NP_115987 C/G R112T plus 24212924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 17p13.3 testes development-related NYD-SP20 20608 rs2291604 NYD-SP20 84690 17 3299188 NM_032598 NP_115987 C/G R112T plus 24212924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 17p13.3 testes development-related NYD-SP20 20609 rs2291604 NYD-SP20 84690 17 3299188 NM_032598 NP_115987 C/G R112T plus 24212924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 17p13.3 testes development-related NYD-SP20 20610 rs2291703 IDN3 25836 5 37011917 NM_015384 NP_056199 C/T N384S minus 3234088 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 100 HapMap 5p13.2 IDN3 protein 20611 rs2291703 IDN3 25836 5 37011917 NM_015384 NP_056199 C/T N384S minus 3234088 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5p13.2 IDN3 protein 20612 rs2291703 IDN3 25836 5 37011917 NM_133433 NP_597677 C/T N384S minus 3234088 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 100 HapMap 5p13.2 IDN3 protein 20613 rs2291703 IDN3 25836 5 37011917 NM_133433 NP_597677 C/T N384S minus 3234088 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5p13.2 IDN3 protein 20614 rs2291725 GIP 2695 17 44394131 NM_004123 NP_004114 C/T S103G plus 3234119 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.27 123 by freq 17q21.3-q22 gastric inhibitory polypeptide 20615 rs2291725 GIP 2695 17 44394131 NM_004123 NP_004114 C/T S103G plus 24541002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 20 0.5 123 by freq 17q21.3-q22 gastric inhibitory polypeptide 20616 rs2291725 GIP 2695 17 44394131 NM_004123 NP_004114 C/T S103G plus 24541002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.13 123 by freq 17q21.3-q22 gastric inhibitory polypeptide 20617 rs2291725 GIP 2695 17 44394131 NM_004123 NP_004114 C/T S103G plus 24541002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 by freq 17q21.3-q22 gastric inhibitory polypeptide 20618 rs2291739 TIMELESS 8914 12 55100920 NM_003920 NP_003911 C/T P1018L minus 3234141 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.43 123 "by submitter,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 20619 rs2291739 TIMELESS 8914 12 55100920 NM_003920 NP_003911 C/T P1018L minus 19232977 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by submitter,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 20620 rs2291739 TIMELESS 8914 12 55100920 NM_003920 NP_003911 C/T P1018L minus 23448306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by submitter,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 20621 rs2291739 TIMELESS 8914 12 55100920 NM_003920 NP_003911 C/T P1018L minus 23448306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by submitter,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 20622 rs2291739 TIMELESS 8914 12 55100920 NM_003920 NP_003911 C/T P1018L minus 23448306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq,cluster" 12q12-q13 timeless homolog (Drosophila) 20623 rs2291806 EPHA2 1969 1 16203524 NM_004431 NP_004422 A/G E825K minus 3234242 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1p36 EphA2 20624 rs2291822 TLL1 7092 4 167378249 NM_012464 NP_036596 C/T T958A minus 24179209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq" 4q32-q33 tolloid-like 1 20625 rs2291822 TLL1 7092 4 167378249 NM_012464 NP_036596 C/T T958A minus 24179209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq" 4q32-q33 tolloid-like 1 20626 rs2291822 TLL1 7092 4 167378249 NM_012464 NP_036596 C/T T958A minus 24179209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by submitter,freq" 4q32-q33 tolloid-like 1 20627 rs2291864 ITPR1 3708 3 4749833 NM_002222 NP_002213 C/T R1698Q minus 3234317 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 100 HapMap 3p26-p25 "inositol 1,4,5-triphosphate receptor, type 1" 20628 rs2292065 GPS2 2874 17 7156867 NM_004489 NP_004480 A/G T306A minus 3234584 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 100 HapMap 17p13 G protein pathway suppressor 2 20629 rs2292065 GPS2 2874 17 7156867 NM_004489 NP_004480 A/G T306A minus 3234584 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17p13 G protein pathway suppressor 2 20630 rs2292065 GPS2 2874 17 7156867 NM_032938 NP_116329 A/G T306A minus 3234584 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 100 HapMap 17p13 G protein pathway suppressor 2 20631 rs2292065 GPS2 2874 17 7156867 NM_032938 NP_116329 A/G T306A minus 3234584 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17p13 G protein pathway suppressor 2 20632 rs2292171 CDA08 81533 16 45851989 NM_030790 NP_110417 C/T M397V plus 3234735 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16q11.2 T-cell immunomodulatory protein 20633 rs2292187 KLK3 354 19 56050181 NM_145864 NP_665863 G/T S53Y minus 3234762 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.06 100 by freq 19q13.41 "kallikrein 3, (prostate specific antigen)" 20634 rs2292191 RPF1 80135 1 84657010 NM_025065 NP_079341 C/T S9G minus 20505904 1303 SEQUENOM CEPH CEPH (92) 92 0.26 123 "by submitter,freq,cluster" 1p22.3 RNA processing factor 1 20635 rs2292191 RPF1 80135 1 84657010 NM_025065 NP_079341 C/T S9G minus 24238184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by submitter,freq,cluster" 1p22.3 RNA processing factor 1 20636 rs2292191 RPF1 80135 1 84657010 NM_025065 NP_079341 C/T S9G minus 24238184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 1p22.3 RNA processing factor 1 20637 rs2292191 RPF1 80135 1 84657010 NM_025065 NP_079341 C/T S9G minus 24238184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 1p22.3 RNA processing factor 1 20638 rs2292245 PTPRG 5793 3 62164229 NM_002841 NP_002832 A/G G574S plus 3234845 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.23 123 "HapMap,submitter,freq,cluster" 3p21-p14 "protein tyrosine phosphatase, receptor type, G" 20639 rs2292245 PTPRG 5793 3 62164229 NM_002841 NP_002832 A/G G574S plus 3234845 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.14 123 "HapMap,submitter,freq,cluster" 3p21-p14 "protein tyrosine phosphatase, receptor type, G" 20640 rs2292245 PTPRG 5793 3 62164229 NM_002841 NP_002832 A/G G574S plus 23872438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,submitter,freq,cluster" 3p21-p14 "protein tyrosine phosphatase, receptor type, G" 20641 rs2292245 PTPRG 5793 3 62164229 NM_002841 NP_002832 A/G G574S plus 23872438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 3p21-p14 "protein tyrosine phosphatase, receptor type, G" 20642 rs2292245 PTPRG 5793 3 62164229 NM_002841 NP_002832 A/G G574S plus 23872438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,submitter,freq,cluster" 3p21-p14 "protein tyrosine phosphatase, receptor type, G" 20643 rs2292290 MUC15 143662 11 26543431 NM_145650 NP_663625 A/G I184T plus 3234921 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.03 100 HapMap 11p14.3 mucin 15 20644 rs2292290 MUC15 143662 11 26543431 NM_145650 NP_663625 A/G I184T plus 3234921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p14.3 mucin 15 20645 rs2292296 ROCK1 6093 18 16800939 NM_005406 NP_005397 C/T L1097F minus 3234928 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18q11.2 "Rho-associated, coiled-coil containing protein kinase 1" 20646 rs2292301 H63 113201 15 42417340 NM_138423 NP_612432 C/T E222K minus 3234935 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q15.1 H63 breast cancer expressed gene 20647 rs2292301 H63 113201 15 42417340 NM_177974 NP_816929 C/T E222K minus 3234935 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q15.1 H63 breast cancer expressed gene 20648 rs2292305 THBS1 7057 15 37668114 NM_003246 NP_003237 C/T T523A minus 3234943 738 YUSUKE JBIC-ALLELE Japanese (752) 722 0.37 121 "by doubleHit,freq,cluster" 15q15 thrombospondin 1 20649 rs2292329 EFCBP2 54550 16 82589385 NM_019065 NP_061938 C/G Q308H plus 3234970 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "by submitter,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 20650 rs2292329 EFCBP2 54550 16 82589385 NM_019065 NP_061938 C/G Q308H plus 24043427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 20651 rs2292329 EFCBP2 54550 16 82589385 NM_019065 NP_061938 C/G Q308H plus 24043427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 20652 rs2292329 EFCBP2 54550 16 82589385 NM_019065 NP_061938 C/G Q308H plus 24043427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by submitter,freq,cluster" 16q23.3-q24.1 EF hand calcium binding protein 2 20653 rs2292506 KRT6IRS 112802 12 51224587 NM_033448 NP_258259 C/T R523Q plus 3235202 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.18 100 "HapMap,submitter,freq" 12q13.13 keratin 6 irs 20654 rs2292506 KRT6IRS 112802 12 51224587 NM_033448 NP_258259 C/T R523Q plus 3235202 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.06 100 "HapMap,submitter,freq" 12q13.13 keratin 6 irs 20655 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 3235319 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.38 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20656 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.31 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20657 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.33 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20658 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20659 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 777 SNP500CANCER HISP1 Hispanic (23) 46 0.26 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20660 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.46 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20661 rs2292596 AHRR 57491 5 475955 NM_020731 NP_065782 C/G P185A minus 7986195 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.41 121 "HapMap,freq,cluster" 5p15.3 aryl-hydrocarbon receptor repressor 20662 rs2292661 PDIR 10954 3 124351800 NM_006810 NP_006801 A/G T391M minus 3235409 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 100 by freq 3q21.1 for protein disulfide isomerase-related 20663 rs2292754 HUMGT198A 29893 17 37978905 NM_013290 NP_037422 A/T Y151N minus 3235554 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 100 HapMap 17q12-q21 "GT198, complete ORF" 20664 rs2292754 HUMGT198A 29893 17 37978905 NM_013290 NP_037422 A/T Y151N minus 3235554 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17q12-q21 "GT198, complete ORF" 20665 rs2292754 HUMGT198A 29893 17 37978905 NM_016556 NP_057640 A/T Y163N minus 3235554 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 100 HapMap 17q12-q21 "GT198, complete ORF" 20666 rs2292754 HUMGT198A 29893 17 37978905 NM_016556 NP_057640 A/T Y163N minus 3235554 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17q12-q21 "GT198, complete ORF" 20667 rs2292829 CLCA3 9629 1 86813670 NM_004921 NP_004912 A/G I104T minus 3235655 738 YUSUKE JBIC-ALLELE Japanese (752) 1284 0.39 100 "by submitter,freq" 1p31-p22 "chloride channel, calcium activated, family member 3" 20668 rs2292830 CLCA3 9629 1 86813396 NM_004921 NP_004912 C/G Y84X minus 3235656 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.43 121 "by doubleHit,submitter,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 3" 20669 rs2292884 MLPH 79083 2 238225226 NM_024101 NP_077006 A/G H347R plus 3235726 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.25 123 "HapMap,doubleHit,freq,cluster" 2q37.3 melanophilin 20670 rs2292884 MLPH 79083 2 238225226 NM_024101 NP_077006 A/G H347R plus 3235726 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 2q37.3 melanophilin 20671 rs2292884 MLPH 79083 2 238225226 NM_024101 NP_077006 A/G H347R plus 23886175 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.16 123 "HapMap,doubleHit,freq,cluster" 2q37.3 melanophilin 20672 rs2292884 MLPH 79083 2 238225226 NM_024101 NP_077006 A/G H347R plus 23886175 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "HapMap,doubleHit,freq,cluster" 2q37.3 melanophilin 20673 rs2292884 MLPH 79083 2 238225226 NM_024101 NP_077006 A/G H347R plus 23886175 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.42 123 "HapMap,doubleHit,freq,cluster" 2q37.3 melanophilin 20674 rs2292923 CLIC3 9022 9 137165967 NM_004669 NP_004660 A/C P38H minus 3235776 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.05 123 "HapMap,freq,cluster" 9q34.3 chloride intracellular channel 3 20675 rs2292923 CLIC3 9022 9 137165967 NM_004669 NP_004660 A/C P38H minus 3235776 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 9q34.3 chloride intracellular channel 3 20676 rs2292923 CLIC3 9022 9 137165967 NM_004669 NP_004660 A/C P38H minus 24098300 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q34.3 chloride intracellular channel 3 20677 rs2292923 CLIC3 9022 9 137165967 NM_004669 NP_004660 A/C P38H minus 24098300 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 9q34.3 chloride intracellular channel 3 20678 rs2292923 CLIC3 9022 9 137165967 NM_004669 NP_004660 A/C P38H minus 24098300 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,freq,cluster" 9q34.3 chloride intracellular channel 3 20679 rs2292927 COL22A1 169044 8 139908094 NM_152888 NP_690848 C/T S320G plus 3235780 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.23 123 "by doubleHit,submitter,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 20680 rs2292927 COL22A1 169044 8 139908094 NM_152888 NP_690848 C/T S320G plus 23878555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 20681 rs2292927 COL22A1 169044 8 139908094 NM_152888 NP_690848 C/T S320G plus 23878555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 20682 rs2292927 COL22A1 169044 8 139908094 NM_152888 NP_690848 C/T S320G plus 23878555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 20683 rs2292954 SPG7 6687 16 88140624 NM_003119 NP_003110 C/T T503A minus 3235817 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.11 123 "by cluster,freq" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 20684 rs2292954 SPG7 6687 16 88140624 NM_003119 NP_003110 C/T T503A minus 24695014 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 20685 rs2292954 SPG7 6687 16 88140624 NM_003119 NP_003110 C/T T503A minus 24695014 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 20686 rs2292954 SPG7 6687 16 88140624 NM_003119 NP_003110 C/T T503A minus 24695014 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 16q24.3 "spastic paraplegia 7, paraplegin (pure and complicated autosomal recessive)" 20687 rs2292969 TBCD 6904 17 78492638 NM_005993 NP_005984 A/G L1185P minus 3235834 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.03 100 by freq 17q25.3 tubulin-specific chaperone d 20688 rs2292971 TBCD 6904 17 78457146 NM_005993 NP_005984 A/G M617T minus 3235836 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.26 123 "by doubleHit,freq,cluster" 17q25.3 tubulin-specific chaperone d 20689 rs2292971 TBCD 6904 17 78457146 NM_005993 NP_005984 A/G M617T minus 23642706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 17q25.3 tubulin-specific chaperone d 20690 rs2292971 TBCD 6904 17 78457146 NM_005993 NP_005984 A/G M617T minus 23642706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.48 123 "by doubleHit,freq,cluster" 17q25.3 tubulin-specific chaperone d 20691 rs2292971 TBCD 6904 17 78457146 NM_005993 NP_005984 A/G M617T minus 23642706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 17q25.3 tubulin-specific chaperone d 20692 rs2293025 TDGF1 6997 3 46595764 NM_003212 NP_003203 A/C Y43D minus 3235905 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 100 by freq 3p21.31 teratocarcinoma-derived growth factor 1 20693 rs2293172 HIMAP4 55303 7 149707190 NM_018326 NP_060796 A/C E128D minus 3236104 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.2 123 "by doubleHit,freq,cluster" 7q36.1 immunity associated protein 4 20694 rs2293172 HIMAP4 55303 7 149707190 NM_018326 NP_060796 A/C E128D minus 24011661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 7q36.1 immunity associated protein 4 20695 rs2293172 HIMAP4 55303 7 149707190 NM_018326 NP_060796 A/C E128D minus 24011661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by doubleHit,freq,cluster" 7q36.1 immunity associated protein 4 20696 rs2293172 HIMAP4 55303 7 149707190 NM_018326 NP_060796 A/C E128D minus 24011661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 7q36.1 immunity associated protein 4 20697 rs2293180 KSR 8844 17 22933943 XM_290793 XP_290793 C/T A337V plus 3236114 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.27 111 "HapMap,freq,cluster" 17q11.2 kinase suppressor of ras 20698 rs2293180 KSR 8844 17 22933943 XM_290793 XP_290793 C/T A337V plus 6618407 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 111 "HapMap,freq,cluster" 17q11.2 kinase suppressor of ras 20699 rs2293232 MUC4 4585 3 196986690 NM_004532 NP_004523 C/T A212T plus 3236187 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 100 "by doubleHit,freq" 3q29 "mucin 4, tracheobronchial" 20700 rs2293232 MUC4 4585 3 196986690 NM_138297 NP_612154 C/T A161T plus 3236187 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 100 "by doubleHit,freq" 3q29 "mucin 4, tracheobronchial" 20701 rs2293239 OGDHL 55753 10 50617858 NM_018245 NP_060715 A/G N725S minus 3236205 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 100 by freq 10q11.23 oxoglutarate dehydrogenase-like 20702 rs2293266 KEL 3792 7 142176129 NM_000420 NP_000411 C/T M1T minus 3236246 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 100 by freq 7q33 Kell blood group 20703 rs2293275 LHCGR 3973 2 48833026 NM_000233 NP_000224 A/G N312S minus 3236255 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.06 123 "by submitter,freq,cluster" 2p21 luteinizing hormone/choriogonadotropin receptor 20704 rs2293275 LHCGR 3973 2 48833026 NM_000233 NP_000224 A/G N312S minus 24637400 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by submitter,freq,cluster" 2p21 luteinizing hormone/choriogonadotropin receptor 20705 rs2293275 LHCGR 3973 2 48833026 NM_000233 NP_000224 A/G N312S minus 24637400 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by submitter,freq,cluster" 2p21 luteinizing hormone/choriogonadotropin receptor 20706 rs2293275 LHCGR 3973 2 48833026 NM_000233 NP_000224 A/G N312S minus 24637400 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by submitter,freq,cluster" 2p21 luteinizing hormone/choriogonadotropin receptor 20707 rs2293283 hIAN6 155038 7 149608967 NM_175571 NP_783161 C/T I301T plus 3236263 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.01 100 by freq 7q36.1 human immune associated nucleotide 6 20708 rs2293362 TENS1 64759 7 47181683 NM_022748 NP_073585 C/G Q360H minus 3236382 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.18 123 "by submitter,freq,cluster" 7p12.3 tensin-like SH2 domain containing 1 20709 rs2293362 TENS1 64759 7 47181683 NM_022748 NP_073585 C/G Q360H minus 24019582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 7p12.3 tensin-like SH2 domain containing 1 20710 rs2293362 TENS1 64759 7 47181683 NM_022748 NP_073585 C/G Q360H minus 24019582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 7p12.3 tensin-like SH2 domain containing 1 20711 rs2293362 TENS1 64759 7 47181683 NM_022748 NP_073585 C/G Q360H minus 24019582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by submitter,freq,cluster" 7p12.3 tensin-like SH2 domain containing 1 20712 rs2293450 ATP5B 506 12 55325941 NM_001686 NP_001677 A/G S25L plus 3236498 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 100 HapMap 12p13-qter "ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide" 20713 rs2293507 AUTS2 26053 7 69672671 NM_015570 NP_056385 G/T A303S plus 3236575 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 7q11.22-q11.23 autism susceptibility candidate 2 20714 rs2293587 ZNF234 10780 19 49344794 NM_006630 NP_006621 A/G V16I plus 3236678 738 YUSUKE JBIC-ALLELE Japanese (752) 928 0.32 100 by freq 19q13.32 zinc finger protein 234 20715 rs2293669 WDR35 57539 2 20054849 NM_020779 NP_065830 C/T A867T plus 3236800 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 100 "HapMap,freq" 2p24.3 WD repeat domain 35 20716 rs2293680 FNBP3 55660 2 153399600 XM_371575 XP_371575 C/G C18W minus 3236813 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 100 by freq 2q24.1 formin binding protein 3 20717 rs2293796 PAPLN 89932 14 72790915 XM_370765 XP_370765 A/G R715Q plus 3236969 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20718 rs2293796 PAPLN 89932 14 72790915 XM_370765 XP_370765 A/G R715Q plus 14388373 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20719 rs2293796 PAPLN 89932 14 72790915 XM_370765 XP_370765 A/G R715Q plus 23654023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20720 rs2293796 PAPLN 89932 14 72790915 XM_370765 XP_370765 A/G R715Q plus 23654023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20721 rs2293796 PAPLN 89932 14 72790915 XM_370765 XP_370765 A/G R715Q plus 23654023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 20722 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.11 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20723 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20724 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 901 AFFY AfAm 12 0.17 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20725 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 902 AFFY Caucasian 24 0.42 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20726 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 903 AFFY Asian 12 1 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20727 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 904 AFFY CEPH 6 0.5 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20728 rs2293869 RP1 6101 8 55701948 NM_006269 NP_006260 A/T N985Y plus 3237063 905 AFFY PDpanel 48 0.29 100 "HapMap,freq" 8q11-q13 retinitis pigmentosa 1 (autosomal dominant) 20729 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 3237131 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.3 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20730 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 22709157 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20731 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 22709157 1303 SEQUENOM CEPH CEPH (92) 92 0.2 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20732 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 23372055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.03 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20733 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 23372055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20734 rs2293925 TOP1MT 116447 8 144463743 NM_052963 NP_443195 A/G R525W plus 23372055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,freq,cluster" 8q24.3 mitochondrial topoisomerase I 20735 rs2293969 ENDOG 2021 9 128660552 NM_004435 NP_004426 A/G S12L minus 3237204 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.21 121 "by doubleHit,freq,cluster" 9q34.1 endonuclease G 20736 rs2293979 LRRC6 23639 8 133706841 NM_012472 NP_036604 A/G T232I plus 3237217 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.17 123 "HapMap,doubleHit,freq,cluster" 8q24.22 testis specific leucine rich repeat protein 20737 rs2293979 LRRC6 23639 8 133706841 NM_012472 NP_036604 A/G T232I plus 10473027 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 123 "HapMap,doubleHit,freq,cluster" 8q24.22 testis specific leucine rich repeat protein 20738 rs2293979 LRRC6 23639 8 133706841 NM_012472 NP_036604 A/G T232I plus 24477807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 8q24.22 testis specific leucine rich repeat protein 20739 rs2293979 LRRC6 23639 8 133706841 NM_012472 NP_036604 A/G T232I plus 24477807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 8q24.22 testis specific leucine rich repeat protein 20740 rs2293979 LRRC6 23639 8 133706841 NM_012472 NP_036604 A/G T232I plus 24477807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 8q24.22 testis specific leucine rich repeat protein 20741 rs2294008 PSCA 8000 8 143758933 NM_005672 NP_005663 C/T T1M plus 3237277 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.36 123 "HapMap,doubleHit,freq,cluster" 8q24.2 prostate stem cell antigen 20742 rs2294008 PSCA 8000 8 143758933 NM_005672 NP_005663 C/T T1M plus 11959612 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 8q24.2 prostate stem cell antigen 20743 rs2294008 PSCA 8000 8 143758933 NM_005672 NP_005663 C/T T1M plus 24395070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 8q24.2 prostate stem cell antigen 20744 rs2294008 PSCA 8000 8 143758933 NM_005672 NP_005663 C/T T1M plus 24395070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 8q24.2 prostate stem cell antigen 20745 rs2294008 PSCA 8000 8 143758933 NM_005672 NP_005663 C/T T1M plus 24395070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 8q24.2 prostate stem cell antigen 20746 rs2294013 ANXA13 312 8 124779910 NM_004306 NP_004297 A/G R86H minus 3237284 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.15 123 "HapMap,submitter,freq" 8q24.1-q24.2 annexin A13 20747 rs2294013 ANXA13 312 8 124779910 NM_004306 NP_004297 A/G R86H minus 3237284 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,submitter,freq" 8q24.1-q24.2 annexin A13 20748 rs2294013 ANXA13 312 8 124779910 NM_004306 NP_004297 A/G R86H minus 24528510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,submitter,freq" 8q24.1-q24.2 annexin A13 20749 rs2294013 ANXA13 312 8 124779910 NM_004306 NP_004297 A/G R86H minus 24528510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,submitter,freq" 8q24.1-q24.2 annexin A13 20750 rs2294013 ANXA13 312 8 124779910 NM_004306 NP_004297 A/G R86H minus 24528510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,submitter,freq" 8q24.1-q24.2 annexin A13 20751 rs2294015 ANXA13 312 8 124766048 NM_004306 NP_004297 A/G V272I minus 11925585 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 annexin A13 20752 rs2294015 ANXA13 312 8 124766048 NM_004306 NP_004297 A/G V272I minus 24070475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 annexin A13 20753 rs2294015 ANXA13 312 8 124766048 NM_004306 NP_004297 A/G V272I minus 24070475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 annexin A13 20754 rs2294015 ANXA13 312 8 124766048 NM_004306 NP_004297 A/G V272I minus 24070475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 8q24.1-q24.2 annexin A13 20755 rs2294039 ARHGEF10 9639 8 1844998 NM_014629 NP_055444 A/G V477I plus 24690372 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 20756 rs2294039 ARHGEF10 9639 8 1844998 NM_014629 NP_055444 A/G V477I plus 24690372 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 20757 rs2294039 ARHGEF10 9639 8 1844998 NM_014629 NP_055444 A/G V477I plus 24690372 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 20758 rs2294066 MYOM2 9172 8 2034107 NM_003970 NP_003961 C/T T776M plus 3237346 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.2 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 20759 rs2294066 MYOM2 9172 8 2034107 NM_003970 NP_003961 C/T T776M plus 24395147 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 20760 rs2294066 MYOM2 9172 8 2034107 NM_003970 NP_003961 C/T T776M plus 24395147 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 20761 rs2294066 MYOM2 9172 8 2034107 NM_003970 NP_003961 C/T T776M plus 24395147 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 20762 rs2294120 ZNF34 80778 8 145974371 NM_030580 NP_085057 C/T *56Q minus 3237407 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.27 121 "by doubleHit,freq,cluster" 8q24.3 zinc finger protein 34 (KOX 32) 20763 rs2294228 SEPN1 57190 1 25824719 NM_020451 NP_065184 G/T N502K minus 3237552 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.04 121 "by doubleHit,freq,cluster" 1p36.13 "selenoprotein N, 1" 20764 rs2294228 SEPN1 57190 1 25824719 NM_206926 NP_996809 G/T N468K minus 3237552 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.04 121 "by doubleHit,freq,cluster" 1p36.13 "selenoprotein N, 1" 20765 rs2294369 CACNA1I 8911 22 38399900 NM_021096 NP_066919 A/G G1782R plus 3237749 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 100 by freq 22q13.1 "calcium channel, voltage-dependent, alpha 1I subunit" 20766 rs2294451 CHTF18 63922 16 787744 NM_022092 NP_071375 C/T P928L plus 3237867 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.3 123 "by doubleHit,freq,cluster" 16p13.3 "CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" 20767 rs2294451 CHTF18 63922 16 787744 NM_022092 NP_071375 C/T P928L plus 6901119 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 16p13.3 "CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" 20768 rs2294619 MAPK8IP3 23162 16 1754441 NM_015133 NP_055948 A/G T753A plus 3238081 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.26 120 "by cluster,freq" 16p13.3 mitogen-activated protein kinase 8 interacting protein 3 20769 rs2294619 MAPK8IP3 23162 16 1754441 NM_033392 NP_203750 A/G T753A plus 3238081 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.26 120 "by cluster,freq" 16p13.3 mitogen-activated protein kinase 8 interacting protein 3 20770 rs2294639 FBXO6 26270 1 11667691 NM_018438 NP_060908 G/T P201T minus 3238108 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 by freq 1p36.23-p36.11 F-box protein 6 20771 rs2294689 TTRAP 51567 6 24761252 NM_016614 NP_057698 C/G Q249E minus 3238174 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.45 123 "by submitter,freq,cluster" 6p22.3-p22.1 TRAF and TNF receptor associated protein 20772 rs2294689 TTRAP 51567 6 24761252 NM_016614 NP_057698 C/G Q249E minus 4403022 649 FHCRC POPU1 USA (20) 40 0.15 123 "by submitter,freq,cluster" 6p22.3-p22.1 TRAF and TNF receptor associated protein 20773 rs2294689 TTRAP 51567 6 24761252 NM_016614 NP_057698 C/G Q249E minus 24166776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 6p22.3-p22.1 TRAF and TNF receptor associated protein 20774 rs2294689 TTRAP 51567 6 24761252 NM_016614 NP_057698 C/G Q249E minus 24166776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by submitter,freq,cluster" 6p22.3-p22.1 TRAF and TNF receptor associated protein 20775 rs2294689 TTRAP 51567 6 24761252 NM_016614 NP_057698 C/G Q249E minus 24166776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 "by submitter,freq,cluster" 6p22.3-p22.1 TRAF and TNF receptor associated protein 20776 rs2294757 VNN1 8876 6 133076791 NM_004666 NP_004657 A/G T26I plus 3238271 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,submitter,freq,cluster" 6q23-q24 vanin 1 20777 rs2294757 VNN1 8876 6 133076791 NM_004666 NP_004657 A/G T26I plus 24477573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 6q23-q24 vanin 1 20778 rs2294757 VNN1 8876 6 133076791 NM_004666 NP_004657 A/G T26I plus 24477573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 6q23-q24 vanin 1 20779 rs2294757 VNN1 8876 6 133076791 NM_004666 NP_004657 A/G T26I plus 24477573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 6q23-q24 vanin 1 20780 rs2295000 DATF1 11083 20 61007383 NM_080797 NP_542987 A/G S535L plus 3238606 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.35 123 "by cluster,freq" 20q13.33 death associated transcription factor 1 20781 rs2295000 DATF1 11083 20 61007383 NM_080797 NP_542987 A/G S535L plus 24538413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 20q13.33 death associated transcription factor 1 20782 rs2295000 DATF1 11083 20 61007383 NM_080797 NP_542987 A/G S535L plus 24538413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 20q13.33 death associated transcription factor 1 20783 rs2295000 DATF1 11083 20 61007383 NM_080797 NP_542987 A/G S535L plus 24538413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 20q13.33 death associated transcription factor 1 20784 rs2295005 HINT3 135114 6 126319923 NM_138571 NP_612638 C/G G36A minus 24421959 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 6q22.33 histidine triad nucleotide binding protein 3 20785 rs2295005 HINT3 135114 6 126319923 NM_138571 NP_612638 C/G G36A minus 24421959 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 6q22.33 histidine triad nucleotide binding protein 3 20786 rs2295005 HINT3 135114 6 126319923 NM_138571 NP_612638 C/G G36A minus 24421959 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 6q22.33 histidine triad nucleotide binding protein 3 20787 rs2295006 GLP1R 2740 6 39132203 NM_002062 NP_002053 C/T R44H minus 3238619 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.04 123 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 20788 rs2295006 GLP1R 2740 6 39132203 NM_002062 NP_002053 C/T R44H minus 14323012 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 20789 rs2295006 GLP1R 2740 6 39132203 NM_002062 NP_002053 C/T R44H minus 23426552 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 20790 rs2295006 GLP1R 2740 6 39132203 NM_002062 NP_002053 C/T R44H minus 23426552 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 20791 rs2295006 GLP1R 2740 6 39132203 NM_002062 NP_002053 C/T R44H minus 23426552 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 20792 rs2295021 EPHA8 2046 1 22665139 NM_020526 NP_065387 C/T V444M minus 3238641 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.01 100 by freq 1p36.11 EphA8 20793 rs2295182 CSRP2BP 57325 20 18091243 NM_020536 NP_065397 C/G R442T plus 3238841 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 100 by freq 20p11.23 CSRP2 binding protein 20794 rs2295182 CSRP2BP 57325 20 18091243 NM_177926 NP_808779 C/G R314T plus 3238841 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 100 by freq 20p11.23 CSRP2 binding protein 20795 rs2295201 PHACTR2 9749 6 144135233 XM_376540 XP_376540 A/G I449V plus 3238874 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0 100 by freq 6q24.1 phosphatase and actin regulator 2 20796 rs2295213 ASB2 51676 14 93489463 NM_016150 NP_057234 A/G P160S plus 3238890 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 by freq 14q31-q32 ankyrin repeat and SOCS box-containing 2 20797 rs2295275 TRERF1 55809 6 42332524 NM_018415 NP_060885 A/T C590S minus 3238971 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.09 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20798 rs2295275 TRERF1 55809 6 42332524 NM_018415 NP_060885 A/T C590S minus 24482374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20799 rs2295275 TRERF1 55809 6 42332524 NM_018415 NP_060885 A/T C590S minus 24482374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20800 rs2295275 TRERF1 55809 6 42332524 NM_018415 NP_060885 A/T C590S minus 24482374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20801 rs2295275 TRERF1 55809 6 42332524 NM_033501 NP_277036 A/T C590S minus 3238971 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.09 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20802 rs2295275 TRERF1 55809 6 42332524 NM_033501 NP_277036 A/T C590S minus 24482374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20803 rs2295275 TRERF1 55809 6 42332524 NM_033501 NP_277036 A/T C590S minus 24482374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20804 rs2295275 TRERF1 55809 6 42332524 NM_033501 NP_277036 A/T C590S minus 24482374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20805 rs2295275 TRERF1 55809 6 42332524 NM_033502 NP_277037 A/T C834S minus 3238971 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.09 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20806 rs2295275 TRERF1 55809 6 42332524 NM_033502 NP_277037 A/T C834S minus 24482374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20807 rs2295275 TRERF1 55809 6 42332524 NM_033502 NP_277037 A/T C834S minus 24482374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20808 rs2295275 TRERF1 55809 6 42332524 NM_033502 NP_277037 A/T C834S minus 24482374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.1-p12.1 transcriptional regulating factor 1 20809 rs2295418 EBAF 7044 1 222432120 NM_003240 NP_003231 A/G P286L plus 3239147 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.14 100 by freq 1q42.1 "endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily)" 20810 rs2295466 RAD54L 8438 1 46438277 NM_003579 NP_003570 A/G K151E plus 3239213 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 by freq 1p32 RAD54-like (S. cerevisiae) 20811 rs2295466 RAD54L 8438 1 46438277 NM_003579 NP_003570 A/G K151E plus 3239213 1303 SEQUENOM CEPH CEPH (92) 92 1 100 by freq 1p32 RAD54-like (S. cerevisiae) 20812 rs2295474 XDH 7498 2 31470524 NM_000379 NP_000370 C/T C1318Y plus 3239221 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2p23-p22 xanthine dehydrogenase 20813 rs2295474 XDH 7498 2 31470524 NM_000379 NP_000370 C/T C1318Y plus 3239221 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1478 0 100 HapMap 2p23-p22 xanthine dehydrogenase 20814 rs2295490 TRIB3 57761 20 316905 NM_021158 NP_066981 A/G Q84R plus 8364088 1303 SEQUENOM CEPH CEPH (92) 92 0.45 120 "by doubleHit,freq,cluster" 20p13-p12.2 tribbles homolog 3 (Drosophila) 20815 rs2295497 ADD1 118 4 2914664 NM_001119 NP_001110 A/G R6C minus 3239256 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20816 rs2295497 ADD1 118 4 2914664 NM_001119 NP_001110 A/G R6C minus 23891814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20817 rs2295497 ADD1 118 4 2914664 NM_001119 NP_001110 A/G R6C minus 23891814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20818 rs2295497 ADD1 118 4 2914664 NM_001119 NP_001110 A/G R6C minus 23891814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20819 rs2295497 ADD1 118 4 2914664 NM_014189 NP_054908 A/G R6C minus 3239256 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20820 rs2295497 ADD1 118 4 2914664 NM_014189 NP_054908 A/G R6C minus 23891814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20821 rs2295497 ADD1 118 4 2914664 NM_014189 NP_054908 A/G R6C minus 23891814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20822 rs2295497 ADD1 118 4 2914664 NM_014189 NP_054908 A/G R6C minus 23891814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20823 rs2295497 ADD1 118 4 2914664 NM_014190 NP_054909 A/G R6C minus 3239256 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20824 rs2295497 ADD1 118 4 2914664 NM_014190 NP_054909 A/G R6C minus 23891814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20825 rs2295497 ADD1 118 4 2914664 NM_014190 NP_054909 A/G R6C minus 23891814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20826 rs2295497 ADD1 118 4 2914664 NM_014190 NP_054909 A/G R6C minus 23891814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20827 rs2295497 ADD1 118 4 2914664 NM_176801 NP_789771 A/G R6C minus 3239256 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20828 rs2295497 ADD1 118 4 2914664 NM_176801 NP_789771 A/G R6C minus 23891814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20829 rs2295497 ADD1 118 4 2914664 NM_176801 NP_789771 A/G R6C minus 23891814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20830 rs2295497 ADD1 118 4 2914664 NM_176801 NP_789771 A/G R6C minus 23891814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "by cluster,freq" 4p16.3 adducin 1 (alpha) 20831 rs2295564 CST9L 128821 20 23494639 NM_080610 NP_542177 G/T H109P plus 3239344 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.46 123 "by doubleHit,freq,cluster" 20p11.21 cystatin 9-like (mouse) 20832 rs2295564 CST9L 128821 20 23494639 NM_080610 NP_542177 G/T H109P plus 24511548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 20p11.21 cystatin 9-like (mouse) 20833 rs2295564 CST9L 128821 20 23494639 NM_080610 NP_542177 G/T H109P plus 24511548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 20p11.21 cystatin 9-like (mouse) 20834 rs2295564 CST9L 128821 20 23494639 NM_080610 NP_542177 G/T H109P plus 24511548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.45 123 "by doubleHit,freq,cluster" 20p11.21 cystatin 9-like (mouse) 20835 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20836 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20837 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20838 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 903 AFFY Asian 12 1 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20839 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 904 AFFY CEPH 10 1 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20840 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 3239403 905 AFFY PDpanel 40 0.1 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20841 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 28459083 549 KYUGEN CP CEPH (78) 156 0.24 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20842 rs2295612 SLAMF1 6504 1 157429776 NM_003037 NP_003028 G/T F11L plus 28459083 1335 KYUGEN JPK2 Japanese (100) 200 0.06 123 "by cluster,freq" 1q22-q23 signaling lymphocytic activation molecule family member 1 20843 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 3239406 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20844 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 11387295 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20845 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 11387295 902 AFFY Caucasian 24 0.17 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20846 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 11387295 903 AFFY Asian 12 1 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20847 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 11387295 904 AFFY CEPH 12 0.42 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20848 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 11387295 905 AFFY PDpanel 48 0.04 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20849 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 24633582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20850 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 24633582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20851 rs2295615 CD48 962 1 157467831 NM_001778 NP_001769 C/G E102Q plus 24633582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1q21.3-q22 CD48 antigen (B-cell membrane protein) 20852 rs2295620 IGSF8 93185 1 156876953 NM_052868 NP_443100 C/T T175M minus 3239417 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 100 by freq 1q23.1 "immunoglobulin superfamily, member 8" 20853 rs2295651 MRS2L 57380 6 24511356 NM_020662 NP_065713 C/T P35S plus 3239468 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "by cluster,freq" 6p22.3-p22.1 "MRS2-like, magnesium homeostasis factor (S. cerevisiae)" 20854 rs2295651 MRS2L 57380 6 24511356 NM_020662 NP_065713 C/T P35S plus 23986104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6p22.3-p22.1 "MRS2-like, magnesium homeostasis factor (S. cerevisiae)" 20855 rs2295651 MRS2L 57380 6 24511356 NM_020662 NP_065713 C/T P35S plus 23986104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6p22.3-p22.1 "MRS2-like, magnesium homeostasis factor (S. cerevisiae)" 20856 rs2295651 MRS2L 57380 6 24511356 NM_020662 NP_065713 C/T P35S plus 23986104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 6p22.3-p22.1 "MRS2-like, magnesium homeostasis factor (S. cerevisiae)" 20857 rs2295666 BAT4 7918 6 31738389 NM_033177 NP_149417 C/T A235V minus 3239489 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.01 100 by freq 6p21.3 HLA-B associated transcript 4 20858 rs2295766 SERPINB6 5269 6 2898393 NM_004568 NP_004559 C/T G153S plus 3239642 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1116 0 100 by freq 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20859 rs2295769 SERPINB6 5269 6 2900801 NM_004568 NP_004559 C/T M90V plus 3239646 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.28 123 "by submitter,freq,cluster" 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20860 rs2295769 SERPINB6 5269 6 2900801 NM_004568 NP_004559 C/T M90V plus 3239646 1303 SEQUENOM CEPH CEPH (92) 91 0.35 123 "by submitter,freq,cluster" 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20861 rs2295769 SERPINB6 5269 6 2900801 NM_004568 NP_004559 C/T M90V plus 24423703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by submitter,freq,cluster" 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20862 rs2295769 SERPINB6 5269 6 2900801 NM_004568 NP_004559 C/T M90V plus 24423703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20863 rs2295769 SERPINB6 5269 6 2900801 NM_004568 NP_004559 C/T M90V plus 24423703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by submitter,freq,cluster" 6p25 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6" 20864 rs2295771 SEC31L2 25956 10 102252113 NM_015490 NP_056305 C/T R433Q plus 3239648 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.04 100 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 20865 rs2295772 SEC31L2 25956 10 102255173 NM_015490 NP_056305 A/G P372S plus 3239649 738 YUSUKE JBIC-ALLELE Japanese (752) 1420 0.23 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 20866 rs2295772 SEC31L2 25956 10 102255173 NM_015490 NP_056305 A/G P372S plus 24488904 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 20867 rs2295772 SEC31L2 25956 10 102255173 NM_015490 NP_056305 A/G P372S plus 24488904 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 20868 rs2295772 SEC31L2 25956 10 102255173 NM_015490 NP_056305 A/G P372S plus 24488904 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 20869 rs2295774 SEC31L2 25956 10 102255837 NM_015490 NP_056305 A/C S332A plus 3239651 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 120 "by cluster,freq" 10q24.32 SEC31-like 2 (S. cerevisiae) 20870 rs2295774 SEC31L2 25956 10 102255837 NM_198138 NP_937781 A/C S332A plus 3239651 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 120 "by cluster,freq" 10q24.32 SEC31-like 2 (S. cerevisiae) 20871 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 3239656 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.23 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20872 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 8819751 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.19 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20873 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 8819751 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.26 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20874 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 8819751 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20875 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 8819751 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20876 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 8819751 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.23 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20877 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 24036640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20878 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 24036640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20879 rs2295778 HIF1AN 55662 10 102285826 NM_017902 NP_060372 C/G P41A plus 24036640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 10q24 "hypoxia-inducible factor 1, alpha subunit inhibitor" 20880 rs2295795 TLN1 7094 9 35702003 NM_006289 NP_006280 A/G S1227L plus 3239683 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.34 123 "HapMap,freq" 9p13 talin 1 20881 rs2295795 TLN1 7094 9 35702003 NM_006289 NP_006280 A/G S1227L plus 3239683 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,freq" 9p13 talin 1 20882 rs2295795 TLN1 7094 9 35702003 NM_006289 NP_006280 A/G S1227L plus 24418107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq" 9p13 talin 1 20883 rs2295795 TLN1 7094 9 35702003 NM_006289 NP_006280 A/G S1227L plus 24418107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq" 9p13 talin 1 20884 rs2295795 TLN1 7094 9 35702003 NM_006289 NP_006280 A/G S1227L plus 24418107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq" 9p13 talin 1 20885 rs2295852 SLC26A8 116369 6 36031224 NM_052961 NP_443193 C/T I639V plus 3239767 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.26 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20886 rs2295852 SLC26A8 116369 6 36031224 NM_052961 NP_443193 C/T I639V plus 24384725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20887 rs2295852 SLC26A8 116369 6 36031224 NM_052961 NP_443193 C/T I639V plus 24384725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20888 rs2295852 SLC26A8 116369 6 36031224 NM_052961 NP_443193 C/T I639V plus 24384725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20889 rs2295852 SLC26A8 116369 6 36031224 NM_138718 NP_619732 C/T I534V plus 3239767 738 YUSUKE JBIC-ALLELE Japanese (752) 1314 0.26 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20890 rs2295852 SLC26A8 116369 6 36031224 NM_138718 NP_619732 C/T I534V plus 24384725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20891 rs2295852 SLC26A8 116369 6 36031224 NM_138718 NP_619732 C/T I534V plus 24384725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20892 rs2295852 SLC26A8 116369 6 36031224 NM_138718 NP_619732 C/T I534V plus 24384725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,submitter,freq,cluster" 6p21 "solute carrier family 26, member 8" 20893 rs2295862 OSTF1 26578 9 74975058 NM_012383 NP_036515 A/G N48S plus 3239783 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.02 100 HapMap 9q13-q21.2 osteoclast stimulating factor 1 20894 rs2295862 OSTF1 26578 9 74975058 NM_012383 NP_036515 A/G N48S plus 3239783 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q13-q21.2 osteoclast stimulating factor 1 20895 rs2295873 TACC2 10579 10 123960520 NM_006997 NP_008928 C/T V275A plus 3239797 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.41 116 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 20896 rs2295873 TACC2 10579 10 123960520 NM_206860 NP_996742 C/T V275A plus 3239797 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.41 116 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 20897 rs2295873 TACC2 10579 10 123960520 NM_206861 NP_996743 C/T V343A plus 3239797 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.41 116 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 20898 rs2295873 TACC2 10579 10 123960520 NM_206862 NP_996744 C/T V2197A plus 3239797 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.41 116 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 20899 rs2295876 TACC2 10579 10 123960712 NM_006997 NP_008928 A/T L339H plus 3239800 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 100 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 20900 rs2295876 TACC2 10579 10 123960712 NM_206860 NP_996742 A/T L339H plus 3239800 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 100 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 20901 rs2295876 TACC2 10579 10 123960712 NM_206861 NP_996743 A/T L407H plus 3239800 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 100 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 20902 rs2295876 TACC2 10579 10 123960712 NM_206862 NP_996744 A/T L2261H plus 3239800 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.09 100 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 20903 rs2295878 TACC2 10579 10 123986924 NM_006997 NP_008928 A/G V796I plus 3239802 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20904 rs2295878 TACC2 10579 10 123986924 NM_006997 NP_008928 A/G V796I plus 24106360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20905 rs2295878 TACC2 10579 10 123986924 NM_006997 NP_008928 A/G V796I plus 24106360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20906 rs2295878 TACC2 10579 10 123986924 NM_006997 NP_008928 A/G V796I plus 24106360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20907 rs2295878 TACC2 10579 10 123986924 NM_206860 NP_996742 A/G V766I plus 3239802 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20908 rs2295878 TACC2 10579 10 123986924 NM_206860 NP_996742 A/G V766I plus 24106360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20909 rs2295878 TACC2 10579 10 123986924 NM_206860 NP_996742 A/G V766I plus 24106360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20910 rs2295878 TACC2 10579 10 123986924 NM_206860 NP_996742 A/G V766I plus 24106360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20911 rs2295878 TACC2 10579 10 123986924 NM_206861 NP_996743 A/G V864I plus 3239802 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20912 rs2295878 TACC2 10579 10 123986924 NM_206861 NP_996743 A/G V864I plus 24106360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20913 rs2295878 TACC2 10579 10 123986924 NM_206861 NP_996743 A/G V864I plus 24106360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20914 rs2295878 TACC2 10579 10 123986924 NM_206861 NP_996743 A/G V864I plus 24106360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20915 rs2295878 TACC2 10579 10 123986924 NM_206862 NP_996744 A/G V2718I plus 3239802 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20916 rs2295878 TACC2 10579 10 123986924 NM_206862 NP_996744 A/G V2718I plus 24106360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20917 rs2295878 TACC2 10579 10 123986924 NM_206862 NP_996744 A/G V2718I plus 24106360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20918 rs2295878 TACC2 10579 10 123986924 NM_206862 NP_996744 A/G V2718I plus 24106360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20919 rs2295879 TACC2 10579 10 123986966 NM_006997 NP_008928 A/G A810T plus 3239803 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20920 rs2295879 TACC2 10579 10 123986966 NM_006997 NP_008928 A/G A810T plus 13608542 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20921 rs2295879 TACC2 10579 10 123986966 NM_006997 NP_008928 A/G A810T plus 24571604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20922 rs2295879 TACC2 10579 10 123986966 NM_006997 NP_008928 A/G A810T plus 24571604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20923 rs2295879 TACC2 10579 10 123986966 NM_006997 NP_008928 A/G A810T plus 24571604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20924 rs2295879 TACC2 10579 10 123986966 NM_206860 NP_996742 A/G A780T plus 3239803 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20925 rs2295879 TACC2 10579 10 123986966 NM_206860 NP_996742 A/G A780T plus 13608542 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20926 rs2295879 TACC2 10579 10 123986966 NM_206860 NP_996742 A/G A780T plus 24571604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20927 rs2295879 TACC2 10579 10 123986966 NM_206860 NP_996742 A/G A780T plus 24571604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20928 rs2295879 TACC2 10579 10 123986966 NM_206860 NP_996742 A/G A780T plus 24571604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20929 rs2295879 TACC2 10579 10 123986966 NM_206861 NP_996743 A/G A878T plus 3239803 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20930 rs2295879 TACC2 10579 10 123986966 NM_206861 NP_996743 A/G A878T plus 13608542 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20931 rs2295879 TACC2 10579 10 123986966 NM_206861 NP_996743 A/G A878T plus 24571604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20932 rs2295879 TACC2 10579 10 123986966 NM_206861 NP_996743 A/G A878T plus 24571604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20933 rs2295879 TACC2 10579 10 123986966 NM_206861 NP_996743 A/G A878T plus 24571604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20934 rs2295879 TACC2 10579 10 123986966 NM_206862 NP_996744 A/G A2732T plus 3239803 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20935 rs2295879 TACC2 10579 10 123986966 NM_206862 NP_996744 A/G A2732T plus 13608542 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20936 rs2295879 TACC2 10579 10 123986966 NM_206862 NP_996744 A/G A2732T plus 24571604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20937 rs2295879 TACC2 10579 10 123986966 NM_206862 NP_996744 A/G A2732T plus 24571604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20938 rs2295879 TACC2 10579 10 123986966 NM_206862 NP_996744 A/G A2732T plus 24571604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 10q26 "transforming, acidic coiled-coil containing protein 2" 20939 rs2296067 JMJD2C 23081 9 6974236 NM_015061 NP_055876 A/G D396N plus 3240044 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.43 123 "HapMap,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 20940 rs2296067 JMJD2C 23081 9 6974236 NM_015061 NP_055876 A/G D396N plus 3240044 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 20941 rs2296067 JMJD2C 23081 9 6974236 NM_015061 NP_055876 A/G D396N plus 23929877 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 20942 rs2296067 JMJD2C 23081 9 6974236 NM_015061 NP_055876 A/G D396N plus 23929877 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 20943 rs2296067 JMJD2C 23081 9 6974236 NM_015061 NP_055876 A/G D396N plus 23929877 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 9p24-p23 jumonji domain containing 2C 20944 rs2296079 TRIM14 9830 9 97936749 NM_014788 NP_055603 C/T V219M plus 3240070 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q31.1 tripartite motif-containing 14 20945 rs2296079 TRIM14 9830 9 97936749 NM_033219 NP_150088 C/T V219M plus 3240070 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q31.1 tripartite motif-containing 14 20946 rs2296079 TRIM14 9830 9 97936749 NM_033220 NP_150089 C/T V219M plus 3240070 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q31.1 tripartite motif-containing 14 20947 rs2296079 TRIM14 9830 9 97936749 NM_033221 NP_150090 C/T V219M plus 3240070 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q31.1 tripartite motif-containing 14 20948 rs2296136 ANKRD16 54522 10 5969968 XM_166138 XP_166138 C/G A128G plus 3240136 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 123 "HapMap,freq,cluster" 10p15.1 ankyrin repeat domain 16 20949 rs2296136 ANKRD16 54522 10 5969968 XM_166138 XP_166138 C/G A128G plus 23886655 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq,cluster" 10p15.1 ankyrin repeat domain 16 20950 rs2296136 ANKRD16 54522 10 5969968 XM_166138 XP_166138 C/G A128G plus 23886655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,freq,cluster" 10p15.1 ankyrin repeat domain 16 20951 rs2296136 ANKRD16 54522 10 5969968 XM_166138 XP_166138 C/G A128G plus 23886655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "HapMap,freq,cluster" 10p15.1 ankyrin repeat domain 16 20952 rs2296136 ANKRD16 54522 10 5969968 XM_166138 XP_166138 C/G A128G plus 23886655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 10p15.1 ankyrin repeat domain 16 20953 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 3240155 738 YUSUKE JBIC-ALLELE Japanese (752) 1252 0.07 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20954 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 6903667 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20955 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 6903667 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20956 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 6903667 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20957 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 6903667 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20958 rs2296151 ASIP 434 20 32311879 NM_001672 NP_001663 A/G V13A minus 6903667 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 20q11.2-q12 "agouti signaling protein, nonagouti homolog (mouse)" 20959 rs2296158 CR1L 1379 1 204240006 XM_114735 XP_114735 A/G R116G plus 24617536 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q32.1 complement component (3b/4b) receptor 1-like 20960 rs2296158 CR1L 1379 1 204240006 XM_114735 XP_114735 A/G R116G plus 24617536 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q32.1 complement component (3b/4b) receptor 1-like 20961 rs2296158 CR1L 1379 1 204240006 XM_114735 XP_114735 A/G R116G plus 24617536 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 1q32.1 complement component (3b/4b) receptor 1-like 20962 rs2296160 CR1 1378 1 204183715 NM_000573 NP_000564 C/T T1969A minus 3240165 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.38 121 "by cluster,freq" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 20963 rs2296160 CR1 1378 1 204183715 NM_000651 NP_000642 C/T T2419A minus 3240165 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.38 121 "by cluster,freq" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 20964 rs2296172 MACF1 23499 1 39504910 NM_012090 NP_036222 A/G M2290V plus 3240188 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.14 100 "by submitter,freq" 1p32-p31 microtubule-actin crosslinking factor 1 20965 rs2296172 MACF1 23499 1 39504910 NM_033044 NP_149033 A/G M2792V plus 3240188 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.14 100 "by submitter,freq" 1p32-p31 microtubule-actin crosslinking factor 1 20966 rs2296286 NDFIP2 54602 13 78878610 XM_041162 XP_041162 A/C P54H plus 3240347 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.17 100 by freq 13q22.2 Nedd4 family interacting protein 2 20967 rs2296303 LAMC2 3918 1 179933627 NM_005562 NP_005553 C/G S733T minus 3240368 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.28 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20968 rs2296303 LAMC2 3918 1 179933627 NM_005562 NP_005553 C/G S733T minus 23197315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20969 rs2296303 LAMC2 3918 1 179933627 NM_005562 NP_005553 C/G S733T minus 23197315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20970 rs2296303 LAMC2 3918 1 179933627 NM_005562 NP_005553 C/G S733T minus 23197315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20971 rs2296303 LAMC2 3918 1 179933627 NM_018891 NP_061486 C/G S733T minus 3240368 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.28 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20972 rs2296303 LAMC2 3918 1 179933627 NM_018891 NP_061486 C/G S733T minus 23197315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20973 rs2296303 LAMC2 3918 1 179933627 NM_018891 NP_061486 C/G S733T minus 23197315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20974 rs2296303 LAMC2 3918 1 179933627 NM_018891 NP_061486 C/G S733T minus 23197315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q25-q31 "laminin, gamma 2" 20975 rs2296306 LAMC2 3918 1 179922981 NM_005562 NP_005553 G/T D247E minus 3240372 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.13 100 by freq 1q25-q31 "laminin, gamma 2" 20976 rs2296306 LAMC2 3918 1 179922981 NM_018891 NP_061486 G/T D247E minus 3240372 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.13 100 by freq 1q25-q31 "laminin, gamma 2" 20977 rs2296308 RWDD3 25950 1 95421960 NM_015485 NP_056300 G/T N86K plus 3240374 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.16 121 "by doubleHit,submitter,freq,cluster" 1p22.1 RWD domain containing 3 20978 rs2296333 ITPR3 3710 6 33749990 NM_002224 NP_002215 A/C G1029V minus 3240403 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 100 by freq 6p21 "inositol 1,4,5-triphosphate receptor, type 3" 20979 rs2296377 TOR3A 64222 1 175782957 NM_022371 NP_071766 A/G F13L minus 3240461 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.32 123 "by doubleHit,freq,cluster" 1q24.3 "torsin family 3, member A" 20980 rs2296377 TOR3A 64222 1 175782957 NM_022371 NP_071766 A/G F13L minus 24792242 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "by doubleHit,freq,cluster" 1q24.3 "torsin family 3, member A" 20981 rs2296436 HPS1 3257 10 100169841 NM_000195 NP_000186 A/G Q603R minus 3240549 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "by cluster,freq" 10q23.1-q23.3 Hermansky-Pudlak syndrome 1 20982 rs2296436 HPS1 3257 10 100169841 NM_000195 NP_000186 A/G Q603R minus 24093971 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 10q23.1-q23.3 Hermansky-Pudlak syndrome 1 20983 rs2296436 HPS1 3257 10 100169841 NM_000195 NP_000186 A/G Q603R minus 24093971 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 10q23.1-q23.3 Hermansky-Pudlak syndrome 1 20984 rs2296436 HPS1 3257 10 100169841 NM_000195 NP_000186 A/G Q603R minus 24093971 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 10q23.1-q23.3 Hermansky-Pudlak syndrome 1 20985 rs2296556 FRMPD1 22844 9 37697441 NM_014907 NP_055722 C/T A44T minus 3240702 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 20986 rs2296556 FRMPD1 22844 9 37697441 NM_014907 NP_055722 C/T A44T minus 10515063 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 20987 rs2296556 FRMPD1 22844 9 37697441 NM_014907 NP_055722 C/T A44T minus 24090638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 20988 rs2296556 FRMPD1 22844 9 37697441 NM_014907 NP_055722 C/T A44T minus 24090638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 20989 rs2296556 FRMPD1 22844 9 37697441 NM_014907 NP_055722 C/T A44T minus 24090638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 9p13.1 FERM and PDZ domain containing 1 20990 rs2296610 NEBL 10529 10 21197627 NM_006393 NP_006384 G/T A219D plus 3240773 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.12 123 "HapMap,submitter,freq,cluster" 10p12 nebulette 20991 rs2296610 NEBL 10529 10 21197627 NM_006393 NP_006384 G/T A219D plus 24045219 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,submitter,freq,cluster" 10p12 nebulette 20992 rs2296610 NEBL 10529 10 21197627 NM_006393 NP_006384 G/T A219D plus 24045219 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 10p12 nebulette 20993 rs2296610 NEBL 10529 10 21197627 NM_006393 NP_006384 G/T A219D plus 24045219 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 10p12 nebulette 20994 rs2296610 NEBL 10529 10 21197627 NM_006393 NP_006384 G/T A219D plus 24045219 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 10p12 nebulette 20995 rs2296651 SLC10A1 6554 14 69314946 NM_003049 NP_003040 A/G S267F plus 3240823 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 123 "HapMap,freq,cluster" 14q24.1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" 20996 rs2296651 SLC10A1 6554 14 69314946 NM_003049 NP_003040 A/G S267F plus 3240823 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 14q24.1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" 20997 rs2296651 SLC10A1 6554 14 69314946 NM_003049 NP_003040 A/G S267F plus 24096194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 14q24.1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" 20998 rs2296651 SLC10A1 6554 14 69314946 NM_003049 NP_003040 A/G S267F plus 24096194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 14q24.1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" 20999 rs2296651 SLC10A1 6554 14 69314946 NM_003049 NP_003040 A/G S267F plus 24096194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 14q24.1 "solute carrier family 10 (sodium/bile acid cotransporter family), member 1" 21000 rs2296681 CYP2C18 1562 10 96456582 NM_000772 NP_000763 C/T K232E minus 3240866 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 100 by freq 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 18" 21001 rs2296723 SLC39A9 55334 14 68960659 NM_018375 NP_060845 G/T E64D minus 3240926 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q24.1 "solute carrier family 39 (zinc transporter), member 9" 21002 rs2296949 POMT1 10585 9 131414990 NM_007171 NP_009102 A/G Q251R plus 3241221 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,doubleHit,freq,cluster" 9q34.1 protein-O-mannosyltransferase 1 21003 rs2296961 PDLIM1 9124 10 97013620 NM_020992 NP_066272 C/T N175S plus 3241233 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.05 121 "by doubleHit,freq,cluster" 10q22-q26.3 PDZ and LIM domain 1 (elfin) 21004 rs2296961 PDLIM1 9124 10 97013620 NM_020992 NP_066272 C/T N175S plus 16490192 1303 SEQUENOM CEPH CEPH (92) 92 0.31 121 "by doubleHit,freq,cluster" 10q22-q26.3 PDZ and LIM domain 1 (elfin) 21005 rs2297019 MEP1A 4224 6 46911061 NM_005588 NP_005579 C/T M634V minus 3241308 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.27 123 "by doubleHit,submitter,freq,cluster" 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 21006 rs2297019 MEP1A 4224 6 46911061 NM_005588 NP_005579 C/T M634V minus 23434119 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 21007 rs2297019 MEP1A 4224 6 46911061 NM_005588 NP_005579 C/T M634V minus 23434119 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 21008 rs2297019 MEP1A 4224 6 46911061 NM_005588 NP_005579 C/T M634V minus 23434119 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 21009 rs2297020 MEP1A 4224 6 46910977 NM_005588 NP_005579 A/T T606S minus 3241309 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.28 123 by freq 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 21010 rs2297025 GBP2 2634 1 89294723 NM_004120 NP_004111 A/G S281P plus 3241318 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.1 123 by freq 1p22.2 "guanylate binding protein 2, interferon-inducible" 21011 rs2297025 GBP2 2634 1 89294723 NM_004120 NP_004111 A/G S281P plus 23847812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1p22.2 "guanylate binding protein 2, interferon-inducible" 21012 rs2297025 GBP2 2634 1 89294723 NM_004120 NP_004111 A/G S281P plus 23847812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p22.2 "guanylate binding protein 2, interferon-inducible" 21013 rs2297025 GBP2 2634 1 89294723 NM_004120 NP_004111 A/G S281P plus 23847812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 1p22.2 "guanylate binding protein 2, interferon-inducible" 21014 rs2297085 FBP1 2203 9 94448660 NM_000507 NP_000498 A/T F233I plus 3241391 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.06 100 HapMap 9q22.3 "fructose-1,6-bisphosphatase 1" 21015 rs2297085 FBP1 2203 9 94448660 NM_000507 NP_000498 A/T F233I plus 3241391 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q22.3 "fructose-1,6-bisphosphatase 1" 21016 rs2297089 TMEM2 23670 9 71534652 NM_013390 NP_037522 C/T S1254N plus 23594187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 9q13-q21 transmembrane protein 2 21017 rs2297089 TMEM2 23670 9 71534652 NM_013390 NP_037522 C/T S1254N plus 23594187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 9q13-q21 transmembrane protein 2 21018 rs2297089 TMEM2 23670 9 71534652 NM_013390 NP_037522 C/T S1254N plus 23594187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 9q13-q21 transmembrane protein 2 21019 rs2297232 PIP5K1B 8395 9 68835702 NM_003558 NP_003549 C/T N532S minus 3241594 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 9q13 "phosphatidylinositol-4-phosphate 5-kinase, type I, beta" 21020 rs2297232 PIP5K1B 8395 9 68835702 NM_003558 NP_003549 C/T N532S minus 3241594 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 9q13 "phosphatidylinositol-4-phosphate 5-kinase, type I, beta" 21021 rs2297236 ZC3HAV1 56829 7 138197292 NM_020119 NP_064504 C/G Q701E plus 24478699 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 7q34 "zinc finger CCCH type, antiviral 1" 21022 rs2297236 ZC3HAV1 56829 7 138197292 NM_020119 NP_064504 C/G Q701E plus 24478699 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 by freq 7q34 "zinc finger CCCH type, antiviral 1" 21023 rs2297236 ZC3HAV1 56829 7 138197292 NM_020119 NP_064504 C/G Q701E plus 24478699 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 7q34 "zinc finger CCCH type, antiviral 1" 21024 rs2297241 ZC3HAV1 56829 7 138218289 NM_020119 NP_064504 C/G H565Q plus 3241607 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.36 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21025 rs2297241 ZC3HAV1 56829 7 138218289 NM_020119 NP_064504 C/G H565Q plus 24028569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21026 rs2297241 ZC3HAV1 56829 7 138218289 NM_020119 NP_064504 C/G H565Q plus 24028569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21027 rs2297241 ZC3HAV1 56829 7 138218289 NM_020119 NP_064504 C/G H565Q plus 24028569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21028 rs2297241 ZC3HAV1 56829 7 138218289 NM_024625 NP_078901 C/G H565Q plus 3241607 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.36 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21029 rs2297241 ZC3HAV1 56829 7 138218289 NM_024625 NP_078901 C/G H565Q plus 24028569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21030 rs2297241 ZC3HAV1 56829 7 138218289 NM_024625 NP_078901 C/G H565Q plus 24028569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21031 rs2297241 ZC3HAV1 56829 7 138218289 NM_024625 NP_078901 C/G H565Q plus 24028569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 21032 rs2297270 DSCAM 1826 21 40647500 NM_001389 NP_001380 C/G D232E plus 3241663 738 YUSUKE JBIC-ALLELE Japanese (752) 1084 0.24 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21033 rs2297270 DSCAM 1826 21 40647500 NM_001389 NP_001380 C/G D232E plus 24131415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21034 rs2297270 DSCAM 1826 21 40647500 NM_001389 NP_001380 C/G D232E plus 24131415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21035 rs2297270 DSCAM 1826 21 40647500 NM_001389 NP_001380 C/G D232E plus 24131415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21036 rs2297270 DSCAM 1826 21 40647500 NM_206887 NP_996770 C/G D232E plus 3241663 738 YUSUKE JBIC-ALLELE Japanese (752) 1084 0.24 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21037 rs2297270 DSCAM 1826 21 40647500 NM_206887 NP_996770 C/G D232E plus 24131415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21038 rs2297270 DSCAM 1826 21 40647500 NM_206887 NP_996770 C/G D232E plus 24131415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21039 rs2297270 DSCAM 1826 21 40647500 NM_206887 NP_996770 C/G D232E plus 24131415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 21q22.2 Down syndrome cell adhesion molecule 21040 rs2297322 SLC15A1 6564 13 98174182 NM_005073 NP_005064 C/T S117N plus 3241754 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.4 123 "by doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 21041 rs2297322 SLC15A1 6564 13 98174182 NM_005073 NP_005064 C/T S117N plus 12580371 897 PHARMGKB_PMT PA128183726 492 0.25 123 "by doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 21042 rs2297345 PAK7 57144 20 9491622 NM_020341 NP_065074 C/T S511N plus 3241786 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.43 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21043 rs2297345 PAK7 57144 20 9491622 NM_020341 NP_065074 C/T S511N plus 24088493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21044 rs2297345 PAK7 57144 20 9491622 NM_020341 NP_065074 C/T S511N plus 24088493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21045 rs2297345 PAK7 57144 20 9491622 NM_020341 NP_065074 C/T S511N plus 24088493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21046 rs2297345 PAK7 57144 20 9491622 NM_177990 NP_817127 C/T S511N plus 3241786 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.43 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21047 rs2297345 PAK7 57144 20 9491622 NM_177990 NP_817127 C/T S511N plus 24088493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21048 rs2297345 PAK7 57144 20 9491622 NM_177990 NP_817127 C/T S511N plus 24088493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21049 rs2297345 PAK7 57144 20 9491622 NM_177990 NP_817127 C/T S511N plus 24088493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20p12 p21(CDKN1A)-activated kinase 7 21050 rs2297382 RPAP1 26015 15 39615049 NM_015540 NP_056355 A/T K165M plus 3241832 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.02 123 "by cluster,freq" 15q14 RNA polymerase II associated protein 1 21051 rs2297382 RPAP1 26015 15 39615049 NM_015540 NP_056355 A/T K165M plus 23359175 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q14 RNA polymerase II associated protein 1 21052 rs2297382 RPAP1 26015 15 39615049 NM_015540 NP_056355 A/T K165M plus 23359175 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 15q14 RNA polymerase II associated protein 1 21053 rs2297382 RPAP1 26015 15 39615049 NM_015540 NP_056355 A/T K165M plus 23359175 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 15q14 RNA polymerase II associated protein 1 21054 rs2297411 CABC1 56997 1 223459513 NM_020247 NP_064632 G/T H85Q plus 3241872 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.03 123 "by cluster,freq" 1q42.13 "chaperone, ABC1 activity of bc1 complex like (S. pombe)" 21055 rs2297411 CABC1 56997 1 223459513 NM_020247 NP_064632 G/T H85Q plus 23189544 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q42.13 "chaperone, ABC1 activity of bc1 complex like (S. pombe)" 21056 rs2297411 CABC1 56997 1 223459513 NM_020247 NP_064632 G/T H85Q plus 23189544 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 1q42.13 "chaperone, ABC1 activity of bc1 complex like (S. pombe)" 21057 rs2297411 CABC1 56997 1 223459513 NM_020247 NP_064632 G/T H85Q plus 23189544 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q42.13 "chaperone, ABC1 activity of bc1 complex like (S. pombe)" 21058 rs2297417 CDC42BPA 8476 1 223499487 NM_003607 NP_003598 A/G T1605A minus 3241880 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21059 rs2297417 CDC42BPA 8476 1 223499487 NM_003607 NP_003598 A/G T1605A minus 23860889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21060 rs2297417 CDC42BPA 8476 1 223499487 NM_003607 NP_003598 A/G T1605A minus 23860889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21061 rs2297417 CDC42BPA 8476 1 223499487 NM_003607 NP_003598 A/G T1605A minus 23860889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21062 rs2297417 CDC42BPA 8476 1 223499487 NM_014826 NP_055641 A/G T1524A minus 3241880 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21063 rs2297417 CDC42BPA 8476 1 223499487 NM_014826 NP_055641 A/G T1524A minus 23860889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21064 rs2297417 CDC42BPA 8476 1 223499487 NM_014826 NP_055641 A/G T1524A minus 23860889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21065 rs2297417 CDC42BPA 8476 1 223499487 NM_014826 NP_055641 A/G T1524A minus 23860889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 21066 rs2297483 MRRF 92399 9 122155154 NM_138777 NP_620132 C/T M216V minus 3241967 738 YUSUKE JBIC-ALLELE Japanese (752) 732 0.02 100 by freq 9q34.11 mitochondrial ribosome recycling factor 21067 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 3242009 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21068 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.17 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21069 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21070 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 776 SNP500CANCER AFR1 African / African-American (24) 46 0.15 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21071 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21072 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21073 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 12675557 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21074 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 24596191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21075 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 24596191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21076 rs2297518 NOS2A 4843 17 23120724 NM_000625 NP_000616 A/G S608L plus 24596191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21077 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 3242009 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21078 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.17 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21079 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21080 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 776 SNP500CANCER AFR1 African / African-American (24) 46 0.15 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21081 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21082 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.19 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21083 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 12675557 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.17 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21084 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 24596191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21085 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 24596191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21086 rs2297518 NOS2A 4843 17 23120724 NM_153292 NP_695024 A/G S569L plus 24596191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 21087 rs2297538 EGFL7 51162 9 136840505 NM_016215 NP_057299 A/G V153I plus 3242035 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 120 "by doubleHit,freq,cluster" 9q34.3 "EGF-like-domain, multiple 7" 21088 rs2297538 EGFL7 51162 9 136840505 NM_201446 NP_958854 A/G V153I plus 3242035 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 120 "by doubleHit,freq,cluster" 9q34.3 "EGF-like-domain, multiple 7" 21089 rs2297603 COL15A1 1306 9 98857820 NM_001855 NP_001846 A/C G504V minus 3242125 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.14 123 "HapMap,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 21090 rs2297603 COL15A1 1306 9 98857820 NM_001855 NP_001846 A/C G504V minus 3242125 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 21091 rs2297603 COL15A1 1306 9 98857820 NM_001855 NP_001846 A/C G504V minus 24169527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 21092 rs2297603 COL15A1 1306 9 98857820 NM_001855 NP_001846 A/C G504V minus 24169527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 21093 rs2297603 COL15A1 1306 9 98857820 NM_001855 NP_001846 A/C G504V minus 24169527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 21094 rs2297710 CNKSR1 10256 1 26195082 NM_006314 NP_006305 A/C P350Q plus 3242265 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.13 100 by freq 1p35.3 connector enhancer of kinase suppressor of Ras 1 21095 rs2297722 UNQ2541 389812 9 136932507 NM_203347 NP_976222 C/T K164E plus 10499958 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 9q34.3 MSFL2541 21096 rs2297723 UNQ2541 389812 9 136932543 NM_203347 NP_976222 A/C S152A plus 10493011 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 120 "HapMap,freq,cluster" 9q34.3 MSFL2541 21097 rs2297809 CYP4B1 1580 1 46994792 NM_000779 NP_000770 A/G R375C minus 23843621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21098 rs2297809 CYP4B1 1580 1 46994792 NM_000779 NP_000770 A/G R375C minus 23843621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21099 rs2297809 CYP4B1 1580 1 46994792 NM_000779 NP_000770 A/G R375C minus 23843621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by cluster,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21100 rs2297810 CYP4B1 1580 1 46992879 NM_000779 NP_000770 C/T M331I minus 3242408 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.32 123 "by doubleHit,submitter,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21101 rs2297810 CYP4B1 1580 1 46992879 NM_000779 NP_000770 C/T M331I minus 23160478 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21102 rs2297810 CYP4B1 1580 1 46992879 NM_000779 NP_000770 C/T M331I minus 23160478 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,submitter,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21103 rs2297810 CYP4B1 1580 1 46992879 NM_000779 NP_000770 C/T M331I minus 23160478 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 21104 rs2297852 EPB41L2 2037 6 131319268 NM_001431 NP_001422 G/T Q17H minus 3242468 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 100 by freq 6q23 erythrocyte membrane protein band 4.1-like 2 21105 rs2297881 KIF1B 23095 1 10331833 NM_015074 NP_055889 C/T Y1087C minus 3242507 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.09 123 "by cluster,freq" 1p36.2 kinesin family member 1B 21106 rs2297881 KIF1B 23095 1 10331833 NM_015074 NP_055889 C/T Y1087C minus 23841915 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p36.2 kinesin family member 1B 21107 rs2297881 KIF1B 23095 1 10331833 NM_015074 NP_055889 C/T Y1087C minus 23841915 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1p36.2 kinesin family member 1B 21108 rs2297881 KIF1B 23095 1 10331833 NM_015074 NP_055889 C/T Y1087C minus 23841915 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 1p36.2 kinesin family member 1B 21109 rs2297950 CHIT1 1118 1 199925843 NM_003465 NP_003456 C/T G102S plus 3242608 738 YUSUKE JBIC-ALLELE Japanese (752) 1306 0.29 123 "by doubleHit,submitter,freq,cluster" 1q31-q32 chitinase 1 (chitotriosidase) 21110 rs2297950 CHIT1 1118 1 199925843 NM_003465 NP_003456 C/T G102S plus 24256571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 1q31-q32 chitinase 1 (chitotriosidase) 21111 rs2297950 CHIT1 1118 1 199925843 NM_003465 NP_003456 C/T G102S plus 24256571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,submitter,freq,cluster" 1q31-q32 chitinase 1 (chitotriosidase) 21112 rs2297950 CHIT1 1118 1 199925843 NM_003465 NP_003456 C/T G102S plus 24256571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 1q31-q32 chitinase 1 (chitotriosidase) 21113 rs2297970 AIM1 202 6 107106515 XM_166300 XP_166300 A/G C2018Y plus 3242636 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.08 123 by freq 6q21 absent in melanoma 1 21114 rs2297970 AIM1 202 6 107106515 XM_166300 XP_166300 A/G C2018Y plus 24361060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 6q21 absent in melanoma 1 21115 rs2297970 AIM1 202 6 107106515 XM_166300 XP_166300 A/G C2018Y plus 24361060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6q21 absent in melanoma 1 21116 rs2297970 AIM1 202 6 107106515 XM_166300 XP_166300 A/G C2018Y plus 24361060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 6q21 absent in melanoma 1 21117 rs2297980 TINAG 27283 6 54281372 NM_014464 NP_055279 C/T Q22R minus 3242649 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "by cluster,freq" 6p11.2-p12 tubulointerstitial nephritis antigen 21118 rs2297980 TINAG 27283 6 54281372 NM_014464 NP_055279 C/T Q22R minus 23339795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6p11.2-p12 tubulointerstitial nephritis antigen 21119 rs2297980 TINAG 27283 6 54281372 NM_014464 NP_055279 C/T Q22R minus 23339795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 6p11.2-p12 tubulointerstitial nephritis antigen 21120 rs2297980 TINAG 27283 6 54281372 NM_014464 NP_055279 C/T Q22R minus 23339795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p11.2-p12 tubulointerstitial nephritis antigen 21121 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 3242729 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.12 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21122 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 12675949 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21123 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 12675949 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21124 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 16361674 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21125 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 16361674 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21126 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 24075001 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21127 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 24075001 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21128 rs2298033 ITGA8 8516 10 15689716 XM_167711 XP_167711 C/T S707F minus 24075001 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 10p13 "integrin, alpha 8" 21129 rs2298039 ZDHHC12 84885 9 128564303 NM_032799 NP_116188 C/T P69S minus 3242736 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 HapMap 9q34.13 "zinc finger, DHHC domain containing 12" 21130 rs2298039 ZDHHC12 84885 9 128564303 NM_032799 NP_116188 C/T P69S minus 3242736 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 9q34.13 "zinc finger, DHHC domain containing 12" 21131 rs2298075 SEC31L2 25956 10 102237398 NM_015490 NP_056305 G/T A1169S minus 3242776 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.18 123 "by doubleHit,freq,cluster" 10q24.32 SEC31-like 2 (S. cerevisiae) 21132 rs2298075 SEC31L2 25956 10 102237398 NM_015490 NP_056305 G/T A1169S minus 24488770 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 10q24.32 SEC31-like 2 (S. cerevisiae) 21133 rs2298075 SEC31L2 25956 10 102237398 NM_015490 NP_056305 G/T A1169S minus 24488770 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 10q24.32 SEC31-like 2 (S. cerevisiae) 21134 rs2298075 SEC31L2 25956 10 102237398 NM_015490 NP_056305 G/T A1169S minus 24488770 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q24.32 SEC31-like 2 (S. cerevisiae) 21135 rs2298090 HIST1H1E 3008 6 26265052 NM_005321 NP_005312 A/G K152R plus 3242799 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 123 "by cluster,freq" 6p21.3 "histone 1, H1e" 21136 rs2298090 HIST1H1E 3008 6 26265052 NM_005321 NP_005312 A/G K152R plus 23331160 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6p21.3 "histone 1, H1e" 21137 rs2298090 HIST1H1E 3008 6 26265052 NM_005321 NP_005312 A/G K152R plus 23331160 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 6p21.3 "histone 1, H1e" 21138 rs2298090 HIST1H1E 3008 6 26265052 NM_005321 NP_005312 A/G K152R plus 23331160 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 "histone 1, H1e" 21139 rs2298121 TUBGCP2 10844 10 135001937 NM_006659 NP_006650 C/T A111T plus 3242836 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.02 123 "by cluster,freq" 10q26.3 "tubulin, gamma complex associated protein 2" 21140 rs2298121 TUBGCP2 10844 10 135001937 NM_006659 NP_006650 C/T A111T plus 23587048 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 10q26.3 "tubulin, gamma complex associated protein 2" 21141 rs2298121 TUBGCP2 10844 10 135001937 NM_006659 NP_006650 C/T A111T plus 23587048 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by cluster,freq" 10q26.3 "tubulin, gamma complex associated protein 2" 21142 rs2298121 TUBGCP2 10844 10 135001937 NM_006659 NP_006650 C/T A111T plus 23587048 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 10q26.3 "tubulin, gamma complex associated protein 2" 21143 rs2298437 KRTAP19-4 337971 21 30791157 NM_181610 NP_853641 C/T Y48C plus 3243287 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.36 121 "by doubleHit,freq,cluster" 21q22.1 keratin associated protein 19-4 21144 rs2298447 MUS81 80198 11 65386536 NM_025128 NP_079404 C/T L189F plus 3243311 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.03 100 HapMap 11q13 MUS81 endonuclease homolog (yeast) 21145 rs2298447 MUS81 80198 11 65386536 NM_025128 NP_079404 C/T L189F plus 3243311 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q13 MUS81 endonuclease homolog (yeast) 21146 rs2298546 ANKRD12 23253 18 9245718 NM_015208 NP_056023 C/T S818N minus 3243471 738 YUSUKE JBIC-ALLELE Japanese (752) 1056 0.25 123 "by submitter,freq,cluster" 18p11.22 ankyrin repeat domain 12 21147 rs2298546 ANKRD12 23253 18 9245718 NM_015208 NP_056023 C/T S818N minus 24007327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 18p11.22 ankyrin repeat domain 12 21148 rs2298546 ANKRD12 23253 18 9245718 NM_015208 NP_056023 C/T S818N minus 24007327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 18p11.22 ankyrin repeat domain 12 21149 rs2298546 ANKRD12 23253 18 9245718 NM_015208 NP_056023 C/T S818N minus 24007327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq,cluster" 18p11.22 ankyrin repeat domain 12 21150 rs2298553 MS4A12 54860 11 60021578 NM_017716 NP_060186 C/T Q71X plus 3243479 738 YUSUKE JBIC-ALLELE Japanese (752) 726 0.42 123 "by doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 12" 21151 rs2298553 MS4A12 54860 11 60021578 NM_017716 NP_060186 C/T Q71X plus 24103616 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 12" 21152 rs2298553 MS4A12 54860 11 60021578 NM_017716 NP_060186 C/T Q71X plus 24103616 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "by doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 12" 21153 rs2298553 MS4A12 54860 11 60021578 NM_017716 NP_060186 C/T Q71X plus 24103616 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 12" 21154 rs2298624 MYO5B 4645 18 45683020 XM_371116 XP_371116 C/T R1405H plus 3243580 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.2 123 "HapMap,submitter,freq,cluster" 18q21 myosin VB 21155 rs2298624 MYO5B 4645 18 45683020 XM_371116 XP_371116 C/T R1405H plus 3243580 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,submitter,freq,cluster" 18q21 myosin VB 21156 rs2298624 MYO5B 4645 18 45683020 XM_371116 XP_371116 C/T R1405H plus 24197768 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 18q21 myosin VB 21157 rs2298624 MYO5B 4645 18 45683020 XM_371116 XP_371116 C/T R1405H plus 24197768 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq,cluster" 18q21 myosin VB 21158 rs2298624 MYO5B 4645 18 45683020 XM_371116 XP_371116 C/T R1405H plus 24197768 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,submitter,freq,cluster" 18q21 myosin VB 21159 rs2298668 PRCP 5547 11 82241942 NM_005040 NP_005031 A/C E112D minus 3243643 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.1 123 "HapMap,freq,cluster" 11q14 prolylcarboxypeptidase (angiotensinase C) 21160 rs2298668 PRCP 5547 11 82241942 NM_005040 NP_005031 A/C E112D minus 16180875 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.07 123 "HapMap,freq,cluster" 11q14 prolylcarboxypeptidase (angiotensinase C) 21161 rs2298668 PRCP 5547 11 82241942 NM_005040 NP_005031 A/C E112D minus 24572807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 11q14 prolylcarboxypeptidase (angiotensinase C) 21162 rs2298668 PRCP 5547 11 82241942 NM_005040 NP_005031 A/C E112D minus 24572807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,freq,cluster" 11q14 prolylcarboxypeptidase (angiotensinase C) 21163 rs2298668 PRCP 5547 11 82241942 NM_005040 NP_005031 A/C E112D minus 24572807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 11q14 prolylcarboxypeptidase (angiotensinase C) 21164 rs2298696 MCM3AP 8888 21 46485172 NM_003906 NP_003897 A/C E1872X plus 3243690 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 21q22.3 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein 21165 rs2298697 MCM3AP 8888 21 46485295 NM_003906 NP_003897 A/G R1831C plus 3243691 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.02 100 HapMap 21q22.3 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein 21166 rs2298697 MCM3AP 8888 21 46485295 NM_003906 NP_003897 A/G R1831C plus 3243691 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 21q22.3 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein 21167 rs2298711 LMAN1 3998 18 55151449 NM_005570 NP_005561 A/T M410L minus 3243720 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,submitter,freq" 18q21.3-q22 "lectin, mannose-binding, 1" 21168 rs2298711 LMAN1 3998 18 55151449 NM_005570 NP_005561 A/T M410L minus 24693064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq" 18q21.3-q22 "lectin, mannose-binding, 1" 21169 rs2298711 LMAN1 3998 18 55151449 NM_005570 NP_005561 A/T M410L minus 24693064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq" 18q21.3-q22 "lectin, mannose-binding, 1" 21170 rs2298711 LMAN1 3998 18 55151449 NM_005570 NP_005561 A/T M410L minus 24693064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 18q21.3-q22 "lectin, mannose-binding, 1" 21171 rs2298719 SLC14A1 6563 18 41570447 NM_015865 NP_056949 C/T M167V minus 3243729 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.16 123 "HapMap,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21172 rs2298719 SLC14A1 6563 18 41570447 NM_015865 NP_056949 C/T M167V minus 3243729 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21173 rs2298719 SLC14A1 6563 18 41570447 NM_015865 NP_056949 C/T M167V minus 24037161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21174 rs2298719 SLC14A1 6563 18 41570447 NM_015865 NP_056949 C/T M167V minus 24037161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21175 rs2298719 SLC14A1 6563 18 41570447 NM_015865 NP_056949 C/T M167V minus 24037161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21176 rs2298720 SLC14A1 6563 18 41564413 NM_015865 NP_056949 C/T E44K minus 6757711 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21177 rs2298720 SLC14A1 6563 18 41564413 NM_015865 NP_056949 C/T E44K minus 24037089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21178 rs2298720 SLC14A1 6563 18 41564413 NM_015865 NP_056949 C/T E44K minus 24037089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21179 rs2298720 SLC14A1 6563 18 41564413 NM_015865 NP_056949 C/T E44K minus 24037089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 18q11-q12 "solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" 21180 rs2298771 SCN1A 6323 2 166718295 NM_006920 NP_008851 A/G A1056T minus 3243804 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.3 "sodium channel, voltage-gated, type I, alpha" 21181 rs2298771 SCN1A 6323 2 166718295 NM_006920 NP_008851 A/G A1056T minus 24299377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.3 "sodium channel, voltage-gated, type I, alpha" 21182 rs2298771 SCN1A 6323 2 166718295 NM_006920 NP_008851 A/G A1056T minus 24299377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.3 "sodium channel, voltage-gated, type I, alpha" 21183 rs2298771 SCN1A 6323 2 166718295 NM_006920 NP_008851 A/G A1056T minus 24299377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.3 "sodium channel, voltage-gated, type I, alpha" 21184 rs2298804 FCER1A 2205 1 156086965 NM_002001 NP_001992 A/G K84R plus 3243856 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.02 123 "by cluster,freq" 1q23 "Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide" 21185 rs2298804 FCER1A 2205 1 156086965 NM_002001 NP_001992 A/G K84R plus 23877356 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q23 "Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide" 21186 rs2298804 FCER1A 2205 1 156086965 NM_002001 NP_001992 A/G K84R plus 23877356 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q23 "Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide" 21187 rs2298804 FCER1A 2205 1 156086965 NM_002001 NP_001992 A/G K84R plus 23877356 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1q23 "Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide" 21188 rs2298808 ARHGEF17 9828 11 72749200 NM_014786 NP_055601 A/C A1465D plus 3243861 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "by cluster,freq" 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 21189 rs2298808 ARHGEF17 9828 11 72749200 NM_014786 NP_055601 A/C A1465D plus 23974030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by cluster,freq" 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 21190 rs2298808 ARHGEF17 9828 11 72749200 NM_014786 NP_055601 A/C A1465D plus 23974030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 21191 rs2298808 ARHGEF17 9828 11 72749200 NM_014786 NP_055601 A/C A1465D plus 23974030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 21192 rs2298813 SORL1 6653 11 120898894 NM_003105 NP_003096 A/G A528T plus 3243868 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.15 123 "HapMap,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 21193 rs2298813 SORL1 6653 11 120898894 NM_003105 NP_003096 A/G A528T plus 3243868 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.05 123 "HapMap,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 21194 rs2298813 SORL1 6653 11 120898894 NM_003105 NP_003096 A/G A528T plus 24149631 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 21195 rs2298813 SORL1 6653 11 120898894 NM_003105 NP_003096 A/G A528T plus 24149631 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "HapMap,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 21196 rs2298813 SORL1 6653 11 120898894 NM_003105 NP_003096 A/G A528T plus 24149631 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.19 123 "HapMap,freq,cluster" 11q23.2-q24.2 "sortilin-related receptor, L(DLR class) A repeats-containing" 21197 rs2298831 AMICA 120425 11 117573962 NM_153206 NP_694938 C/T I312M plus 3243889 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.11 123 "HapMap,doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 21198 rs2298831 AMICA 120425 11 117573962 NM_153206 NP_694938 C/T I312M plus 3243889 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 21199 rs2298831 AMICA 120425 11 117573962 NM_153206 NP_694938 C/T I312M plus 23603729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 21200 rs2298831 AMICA 120425 11 117573962 NM_153206 NP_694938 C/T I312M plus 23603729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 21201 rs2298831 AMICA 120425 11 117573962 NM_153206 NP_694938 C/T I312M plus 23603729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 11q23.3 adhesion molecule AMICA 21202 rs2298872 PTPRC 5788 1 195456899 NM_002838 NP_002829 A/C S1283R plus 3243961 738 YUSUKE JBIC-ALLELE Japanese (752) 1312 0.02 100 by freq 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 21203 rs2298872 PTPRC 5788 1 195456899 NM_080921 NP_563578 A/C S1122R plus 3243961 738 YUSUKE JBIC-ALLELE Japanese (752) 1312 0.02 100 by freq 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 21204 rs2298872 PTPRC 5788 1 195456899 NM_080922 NP_563579 A/C S1235R plus 3243961 738 YUSUKE JBIC-ALLELE Japanese (752) 1312 0.02 100 by freq 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 21205 rs2301149 KCNMB1 3779 5 169738534 NM_004137 NP_004128 C/G V110L minus 3247025 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.14 123 "HapMap,doubleHit,freq,cluster" 5q34 "potassium large conductance calcium-activated channel, subfamily M, beta member 1" 21206 rs2301149 KCNMB1 3779 5 169738534 NM_004137 NP_004128 C/G V110L minus 3247025 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,doubleHit,freq,cluster" 5q34 "potassium large conductance calcium-activated channel, subfamily M, beta member 1" 21207 rs2301149 KCNMB1 3779 5 169738534 NM_004137 NP_004128 C/G V110L minus 23751374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 5q34 "potassium large conductance calcium-activated channel, subfamily M, beta member 1" 21208 rs2301149 KCNMB1 3779 5 169738534 NM_004137 NP_004128 C/G V110L minus 23751374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 5q34 "potassium large conductance calcium-activated channel, subfamily M, beta member 1" 21209 rs2301149 KCNMB1 3779 5 169738534 NM_004137 NP_004128 C/G V110L minus 23751374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 5q34 "potassium large conductance calcium-activated channel, subfamily M, beta member 1" 21210 rs2301151 GPR40 2864 19 40534926 NM_005303 NP_005294 A/G R211H plus 3247028 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.22 123 "by doubleHit,freq,cluster" 19q13.1 G protein-coupled receptor 40 21211 rs2301151 GPR40 2864 19 40534926 NM_005303 NP_005294 A/G R211H plus 24682600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 19q13.1 G protein-coupled receptor 40 21212 rs2301151 GPR40 2864 19 40534926 NM_005303 NP_005294 A/G R211H plus 24682600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 19q13.1 G protein-coupled receptor 40 21213 rs2301151 GPR40 2864 19 40534926 NM_005303 NP_005294 A/G R211H plus 24682600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 19q13.1 G protein-coupled receptor 40 21214 rs2301246 CTRL 1506 16 66521704 NM_001907 NP_001898 A/G H173R minus 3247158 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.14 123 "HapMap,freq,cluster" 16q22.1 chymotrypsin-like 21215 rs2301246 CTRL 1506 16 66521704 NM_001907 NP_001898 A/G H173R minus 3247158 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 16q22.1 chymotrypsin-like 21216 rs2301246 CTRL 1506 16 66521704 NM_001907 NP_001898 A/G H173R minus 23759013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq,cluster" 16q22.1 chymotrypsin-like 21217 rs2301246 CTRL 1506 16 66521704 NM_001907 NP_001898 A/G H173R minus 23759013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,freq,cluster" 16q22.1 chymotrypsin-like 21218 rs2301246 CTRL 1506 16 66521704 NM_001907 NP_001898 A/G H173R minus 23759013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 16q22.1 chymotrypsin-like 21219 rs2301279 SYT5 6861 19 60382210 NM_003180 NP_003171 G/T E4D minus 3247200 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.01 100 HapMap 19q synaptotagmin V 21220 rs2301279 SYT5 6861 19 60382210 NM_003180 NP_003171 G/T E4D minus 3247200 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 19q synaptotagmin V 21221 rs2301354 KRTHA6 8689 17 36897172 NM_003771 NP_003762 C/T T315M minus 3247287 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.28 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 6" 21222 rs2301354 KRTHA6 8689 17 36897172 NM_003771 NP_003762 C/T T315M minus 24562460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 6" 21223 rs2301354 KRTHA6 8689 17 36897172 NM_003771 NP_003762 C/T T315M minus 24562460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.37 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 6" 21224 rs2301354 KRTHA6 8689 17 36897172 NM_003771 NP_003762 C/T T315M minus 24562460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 6" 21225 rs2301553 CENTG1 116986 12 56414106 NM_014770 NP_055585 C/T G171S plus 3247564 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 100 by freq 12q13.2 "centaurin, gamma 1" 21226 rs2301562 RASGRP2 10235 11 64254177 NM_005825 NP_005816 C/G G555A plus 3247577 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 HapMap 11q13 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 21227 rs2301562 RASGRP2 10235 11 64254177 NM_005825 NP_005816 C/G G555A plus 3247577 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q13 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 21228 rs2301562 RASGRP2 10235 11 64254177 NM_153819 NP_722541 C/G G493A plus 3247577 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 100 HapMap 11q13 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 21229 rs2301562 RASGRP2 10235 11 64254177 NM_153819 NP_722541 C/G G493A plus 3247577 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11q13 RAS guanyl releasing protein 2 (calcium and DAG-regulated) 21230 rs2301582 NALP1 22861 17 5376987 NM_014922 NP_055737 A/G V1059M minus 14296088 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21231 rs2301582 NALP1 22861 17 5376987 NM_014922 NP_055737 A/G V1059M minus 24705291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21232 rs2301582 NALP1 22861 17 5376987 NM_014922 NP_055737 A/G V1059M minus 24705291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21233 rs2301582 NALP1 22861 17 5376987 NM_014922 NP_055737 A/G V1059M minus 24705291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21234 rs2301582 NALP1 22861 17 5376987 NM_033004 NP_127497 A/G V1059M minus 14296088 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21235 rs2301582 NALP1 22861 17 5376987 NM_033004 NP_127497 A/G V1059M minus 24705291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21236 rs2301582 NALP1 22861 17 5376987 NM_033004 NP_127497 A/G V1059M minus 24705291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21237 rs2301582 NALP1 22861 17 5376987 NM_033004 NP_127497 A/G V1059M minus 24705291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21238 rs2301582 NALP1 22861 17 5376987 NM_033006 NP_127499 A/G V1029M minus 14296088 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21239 rs2301582 NALP1 22861 17 5376987 NM_033006 NP_127499 A/G V1029M minus 24705291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21240 rs2301582 NALP1 22861 17 5376987 NM_033006 NP_127499 A/G V1029M minus 24705291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21241 rs2301582 NALP1 22861 17 5376987 NM_033006 NP_127499 A/G V1029M minus 24705291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21242 rs2301582 NALP1 22861 17 5376987 NM_033007 NP_127500 A/G V1029M minus 14296088 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21243 rs2301582 NALP1 22861 17 5376987 NM_033007 NP_127500 A/G V1029M minus 24705291 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21244 rs2301582 NALP1 22861 17 5376987 NM_033007 NP_127500 A/G V1029M minus 24705291 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21245 rs2301582 NALP1 22861 17 5376987 NM_033007 NP_127500 A/G V1029M minus 24705291 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 21246 rs2301612 ADAMTS13 11093 9 133331536 NM_139025 NP_620594 C/G Q448E plus 3247643 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.18 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21247 rs2301612 ADAMTS13 11093 9 133331536 NM_139025 NP_620594 C/G Q448E plus 24687167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21248 rs2301612 ADAMTS13 11093 9 133331536 NM_139025 NP_620594 C/G Q448E plus 24687167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21249 rs2301612 ADAMTS13 11093 9 133331536 NM_139025 NP_620594 C/G Q448E plus 24687167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21250 rs2301612 ADAMTS13 11093 9 133331536 NM_139026 NP_620595 C/G Q417E plus 3247643 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.18 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21251 rs2301612 ADAMTS13 11093 9 133331536 NM_139026 NP_620595 C/G Q417E plus 24687167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21252 rs2301612 ADAMTS13 11093 9 133331536 NM_139026 NP_620595 C/G Q417E plus 24687167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21253 rs2301612 ADAMTS13 11093 9 133331536 NM_139026 NP_620595 C/G Q417E plus 24687167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21254 rs2301612 ADAMTS13 11093 9 133331536 NM_139027 NP_620596 C/G Q448E plus 3247643 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.18 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21255 rs2301612 ADAMTS13 11093 9 133331536 NM_139027 NP_620596 C/G Q448E plus 24687167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21256 rs2301612 ADAMTS13 11093 9 133331536 NM_139027 NP_620596 C/G Q448E plus 24687167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21257 rs2301612 ADAMTS13 11093 9 133331536 NM_139027 NP_620596 C/G Q448E plus 24687167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q34 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13" 21258 rs2301620 DNAH3 55567 16 20867419 NM_017539 NP_060009 A/G R3744W plus 3247656 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.14 100 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 21259 rs2301626 ITGA3 3675 17 45511556 NM_002204 NP_002195 C/T G840S minus 3247664 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21260 rs2301626 ITGA3 3675 17 45511556 NM_002204 NP_002195 C/T G840S minus 3247664 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21261 rs2301626 ITGA3 3675 17 45511556 NM_002204 NP_002195 C/T G840S minus 24123974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21262 rs2301626 ITGA3 3675 17 45511556 NM_002204 NP_002195 C/T G840S minus 24123974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21263 rs2301626 ITGA3 3675 17 45511556 NM_002204 NP_002195 C/T G840S minus 24123974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21264 rs2301626 ITGA3 3675 17 45511556 NM_005501 NP_005492 C/T G840S minus 3247664 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21265 rs2301626 ITGA3 3675 17 45511556 NM_005501 NP_005492 C/T G840S minus 3247664 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21266 rs2301626 ITGA3 3675 17 45511556 NM_005501 NP_005492 C/T G840S minus 24123974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21267 rs2301626 ITGA3 3675 17 45511556 NM_005501 NP_005492 C/T G840S minus 24123974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21268 rs2301626 ITGA3 3675 17 45511556 NM_005501 NP_005492 C/T G840S minus 24123974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,cluster" 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 21269 rs2301635 SLC26A3 1811 7 107010864 NM_000111 NP_000102 C/T R554Q plus 3247673 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 100 by freq 7q31 "solute carrier family 26, member 3" 21270 rs2301641 ABCB5 340273 7 20471510 NM_178559 NP_848654 A/G K115E plus 3247685 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.24 123 "HapMap,submitter,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 21271 rs2301641 ABCB5 340273 7 20471510 NM_178559 NP_848654 A/G K115E plus 3247685 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,submitter,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 21272 rs2301641 ABCB5 340273 7 20471510 NM_178559 NP_848654 A/G K115E plus 23390412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 21273 rs2301641 ABCB5 340273 7 20471510 NM_178559 NP_848654 A/G K115E plus 23390412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,submitter,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 21274 rs2301641 ABCB5 340273 7 20471510 NM_178559 NP_848654 A/G K115E plus 23390412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 21275 rs2301721 HOXA7 3204 7 26969353 NM_006896 NP_008827 C/T A18T plus 3247793 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.17 121 "HapMap,doubleHit,freq,cluster" 7p15-p14 homeo box A7 21276 rs2301721 HOXA7 3204 7 26969353 NM_006896 NP_008827 C/T A18T plus 17152392 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.14 121 "HapMap,doubleHit,freq,cluster" 7p15-p14 homeo box A7 21277 rs2301752 RNF39 80352 6 30147397 NM_025236 NP_079512 A/G A245T minus 3247835 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.11 118 "by cluster,freq" 6p21.3 ring finger protein 39 21278 rs2301752 RNF39 80352 6 30147397 NM_170769 NP_739575 A/G A245T minus 3247835 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.11 118 "by cluster,freq" 6p21.3 ring finger protein 39 21279 rs2301788 MAN2B2 23324 4 6724936 XM_052620 XP_052620 C/T N541S minus 3247888 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.31 119 "HapMap,doubleHit,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21280 rs2301788 MAN2B2 23324 4 6724936 XM_052620 XP_052620 C/T N541S minus 14630723 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 119 "HapMap,doubleHit,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21281 rs2301790 MAN2B2 23324 4 6718084 XM_052620 XP_052620 C/T M446V minus 3247890 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.31 100 by freq 4p16.2 "mannosidase, alpha, class 2B, member 2" 21282 rs2301795 MAN2B2 23324 4 6714432 XM_052620 XP_052620 C/T V320M minus 3247895 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.32 123 "by doubleHit,submitter,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21283 rs2301795 MAN2B2 23324 4 6714432 XM_052620 XP_052620 C/T V320M minus 24396943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21284 rs2301795 MAN2B2 23324 4 6714432 XM_052620 XP_052620 C/T V320M minus 24396943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,submitter,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21285 rs2301795 MAN2B2 23324 4 6714432 XM_052620 XP_052620 C/T V320M minus 24396943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 4p16.2 "mannosidase, alpha, class 2B, member 2" 21286 rs2301868 BZRAP1 9256 17 53737476 NM_004758 NP_004749 A/G G1830E minus 3247987 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.08 100 "HapMap,freq" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 21287 rs2301868 BZRAP1 9256 17 53737476 NM_004758 NP_004749 A/G G1830E minus 3247987 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 100 "HapMap,freq" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 21288 rs2301870 LPO 4025 17 53687326 NM_006151 NP_006142 C/T V421M minus 3247989 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 117 "HapMap,freq,cluster" 17q23.1 lactoperoxidase 21289 rs2301870 LPO 4025 17 53687326 NM_006151 NP_006142 C/T V421M minus 9806412 693 EGP_SNPS PDR90 NIHPDR 178 0.11 117 "HapMap,freq,cluster" 17q23.1 lactoperoxidase 21290 rs2301870 LPO 4025 17 53687326 NM_006151 NP_006142 C/T V421M minus 9806412 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 117 "HapMap,freq,cluster" 17q23.1 lactoperoxidase 21291 rs2301963 DLGAP2 9228 8 1501416 NM_004745 NP_004736 A/C P384Q plus 3248111 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.49 123 "by submitter,freq,cluster" 8p23 "discs, large (Drosophila) homolog-associated protein 2" 21292 rs2301963 DLGAP2 9228 8 1501416 NM_004745 NP_004736 A/C P384Q plus 24689867 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by submitter,freq,cluster" 8p23 "discs, large (Drosophila) homolog-associated protein 2" 21293 rs2301963 DLGAP2 9228 8 1501416 NM_004745 NP_004736 A/C P384Q plus 24689867 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by submitter,freq,cluster" 8p23 "discs, large (Drosophila) homolog-associated protein 2" 21294 rs2301963 DLGAP2 9228 8 1501416 NM_004745 NP_004736 A/C P384Q plus 24689867 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by submitter,freq,cluster" 8p23 "discs, large (Drosophila) homolog-associated protein 2" 21295 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 3248172 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.46 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21296 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 15355056 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.42 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21297 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 15355056 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.23 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21298 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 15355056 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21299 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 23999279 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21300 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 23999279 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21301 rs2302006 CCL24 6369 7 75087381 NM_002991 NP_002982 A/C I29L minus 23999279 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by cluster,freq" 7q11.23 chemokine (C-C motif) ligand 24 21302 rs2302014 FARP2 9855 2 242100790 XM_376193 XP_376193 C/G L414V minus 3248182 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 100 by freq 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 21303 rs2302054 PCANAP5 50636 2 241849505 XM_297687 XP_297687 A/G V146I plus 3248231 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.49 100 HapMap 18 prostate cancer associated protein 5 21304 rs2302054 PCANAP5 50636 2 241849505 XM_297687 XP_297687 A/G V146I plus 3248231 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 18 prostate cancer associated protein 5 21305 rs2302075 EVC 2121 4 5873614 NM_014556 NP_055371 G/T T449K minus 3248252 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.19 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21306 rs2302075 EVC 2121 4 5873614 NM_014556 NP_055371 G/T T449K minus 23958733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21307 rs2302075 EVC 2121 4 5873614 NM_014556 NP_055371 G/T T449K minus 23958733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21308 rs2302075 EVC 2121 4 5873614 NM_014556 NP_055371 G/T T449K minus 23958733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21309 rs2302075 EVC 2121 4 5873614 NM_153717 NP_714928 G/T T449K minus 3248252 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.19 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21310 rs2302075 EVC 2121 4 5873614 NM_153717 NP_714928 G/T T449K minus 23958733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21311 rs2302075 EVC 2121 4 5873614 NM_153717 NP_714928 G/T T449K minus 23958733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21312 rs2302075 EVC 2121 4 5873614 NM_153717 NP_714928 G/T T449K minus 23958733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 4p16 Ellis van Creveld syndrome 21313 rs2302131 NYREN18 51667 7 150480121 NM_016118 NP_057202 C/T Q13R minus 3248328 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 100 by freq 7q36 NEDD8 ultimate buster-1 21314 rs2302189 MTMR4 9110 17 53939204 NM_004687 NP_004678 A/C V297G plus 3248395 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.5 100 by freq 17q22-q23 myotubularin related protein 4 21315 rs2302190 MTMR4 9110 17 53939507 NM_004687 NP_004678 C/T S280G plus 3248396 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.3 119 "by doubleHit,freq,cluster" 17q22-q23 myotubularin related protein 4 21316 rs2302234 FAM20A 54757 17 64049834 NM_017565 NP_060035 G/T N332K plus 3248454 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 21317 rs2302234 FAM20A 54757 17 64049834 NM_017565 NP_060035 G/T N332K plus 4161416 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 21318 rs2302234 FAM20A 54757 17 64049834 NM_017565 NP_060035 G/T N332K plus 24123972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 21319 rs2302234 FAM20A 54757 17 64049834 NM_017565 NP_060035 G/T N332K plus 24123972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 21320 rs2302234 FAM20A 54757 17 64049834 NM_017565 NP_060035 G/T N332K plus 24123972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 21321 rs2302275 CDX1 1044 5 149527021 NM_001804 NP_001795 C/G P130R plus 3248510 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.47 121 "by doubleHit,freq,cluster" 5q31-q33 caudal type homeo box transcription factor 1 21322 rs2302306 TJP3 27134 19 3687239 NM_014428 NP_055243 A/G V435M plus 3248546 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.04 123 "HapMap,freq" 19p13.3 tight junction protein 3 (zona occludens 3) 21323 rs2302306 TJP3 27134 19 3687239 NM_014428 NP_055243 A/G V435M plus 3248546 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 19p13.3 tight junction protein 3 (zona occludens 3) 21324 rs2302306 TJP3 27134 19 3687239 NM_014428 NP_055243 A/G V435M plus 24191094 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "HapMap,freq" 19p13.3 tight junction protein 3 (zona occludens 3) 21325 rs2302306 TJP3 27134 19 3687239 NM_014428 NP_055243 A/G V435M plus 24191094 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 19p13.3 tight junction protein 3 (zona occludens 3) 21326 rs2302306 TJP3 27134 19 3687239 NM_014428 NP_055243 A/G V435M plus 24191094 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,freq" 19p13.3 tight junction protein 3 (zona occludens 3) 21327 rs2302311 EPX 8288 17 53635446 NM_000502 NP_000493 A/T N572Y plus 3248554 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 100 HapMap 17q23.1 eosinophil peroxidase 21328 rs2302311 EPX 8288 17 53635446 NM_000502 NP_000493 A/T N572Y plus 3248554 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 100 HapMap 17q23.1 eosinophil peroxidase 21329 rs2302323 PLD2 5338 17 4673026 NM_002663 NP_002654 C/T G901D minus 3248567 738 YUSUKE JBIC-ALLELE Japanese (752) 730 0.01 100 HapMap 17p13.1 phospholipase D2 21330 rs2302323 PLD2 5338 17 4673026 NM_002663 NP_002654 C/T G901D minus 3248567 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 17p13.1 phospholipase D2 21331 rs2302339 INMT 11185 7 30568528 NM_006774 NP_006765 A/G M205V plus 3248584 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 120 "by doubleHit,freq,cluster" 7p15.3-p15.2 indolethylamine N-methyltransferase 21332 rs2302340 INMT 11185 7 30568571 NM_006774 NP_006765 A/G E219G plus 3248585 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.39 121 "by cluster,freq" 7p15.3-p15.2 indolethylamine N-methyltransferase 21333 rs2302349 ABHD5 51099 3 43718792 NM_016006 NP_057090 A/G I72T minus 3248596 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 100 HapMap 3p21 abhydrolase domain containing 5 21334 rs2302427 EZH2 2146 7 147963552 NM_004456 NP_004447 C/G D185H minus 3248695 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21335 rs2302427 EZH2 2146 7 147963552 NM_004456 NP_004447 C/G D185H minus 24021893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21336 rs2302427 EZH2 2146 7 147963552 NM_004456 NP_004447 C/G D185H minus 24021893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21337 rs2302427 EZH2 2146 7 147963552 NM_004456 NP_004447 C/G D185H minus 24021893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21338 rs2302427 EZH2 2146 7 147963552 NM_152998 NP_694543 C/G D146H minus 3248695 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21339 rs2302427 EZH2 2146 7 147963552 NM_152998 NP_694543 C/G D146H minus 24021893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21340 rs2302427 EZH2 2146 7 147963552 NM_152998 NP_694543 C/G D146H minus 24021893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21341 rs2302427 EZH2 2146 7 147963552 NM_152998 NP_694543 C/G D146H minus 24021893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by cluster,freq" 7q35-q36 enhancer of zeste homolog 2 (Drosophila) 21342 rs2302464 BST1 683 4 15385521 NM_004334 NP_004325 C/T R145Q minus 3248741 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.25 100 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21343 rs2302464 BST1 683 4 15385521 NM_004334 NP_004325 C/T R145Q minus 3248741 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 100 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21344 rs2302465 BST1 683 4 15385461 NM_004334 NP_004325 C/T R125H minus 3248742 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.04 123 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21345 rs2302465 BST1 683 4 15385461 NM_004334 NP_004325 C/T R125H minus 3248742 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.15 123 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21346 rs2302465 BST1 683 4 15385461 NM_004334 NP_004325 C/T R125H minus 24347796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21347 rs2302465 BST1 683 4 15385461 NM_004334 NP_004325 C/T R125H minus 24347796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21348 rs2302465 BST1 683 4 15385461 NM_004334 NP_004325 C/T R125H minus 24347796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 4p15 bone marrow stromal cell antigen 1 21349 rs2302466 BST1 683 4 15383448 NM_004334 NP_004325 A/G A77V minus 3248743 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.01 100 HapMap 4p15 bone marrow stromal cell antigen 1 21350 rs2302466 BST1 683 4 15383448 NM_004334 NP_004325 A/G A77V minus 3248743 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 4p15 bone marrow stromal cell antigen 1 21351 rs2302515 APOBEC1 339 12 7696503 NM_001644 NP_001635 C/G M80I plus 12183575 1303 SEQUENOM CEPH CEPH (92) 92 0.13 121 "by doubleHit,freq,cluster" 12p13.1 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1" 21352 rs2302516 GDF3 9573 12 7733854 NM_020634 NP_065685 C/G V328L plus 3248802 738 YUSUKE JBIC-ALLELE Japanese (752) 732 0.06 100 "HapMap,freq" 12p13.1 growth differentiation factor 3 21353 rs2302516 GDF3 9573 12 7733854 NM_020634 NP_065685 C/G V328L plus 3248802 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 100 "HapMap,freq" 12p13.1 growth differentiation factor 3 21354 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 3248810 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.11 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21355 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 5607643 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.17 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21356 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 5607643 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21357 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 5607643 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21358 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 23608921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21359 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 23608921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21360 rs2302524 PLAUR 5329 19 48848312 NM_002659 NP_002650 C/T K220R plus 23608921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 19q13 "plasminogen activator, urokinase receptor" 21361 rs2302566 SLA/LP 51091 4 24801972 NM_016955 NP_058651 C/G K373N minus 3248874 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21362 rs2302566 SLA/LP 51091 4 24801972 NM_016955 NP_058651 C/G K373N minus 14605429 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21363 rs2302566 SLA/LP 51091 4 24801972 NM_016955 NP_058651 C/G K373N minus 24165718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21364 rs2302566 SLA/LP 51091 4 24801972 NM_016955 NP_058651 C/G K373N minus 24165718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21365 rs2302566 SLA/LP 51091 4 24801972 NM_016955 NP_058651 C/G K373N minus 24165718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21366 rs2302566 SLA/LP 51091 4 24801972 NM_153825 NP_722547 C/G K392N minus 3248874 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.11 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21367 rs2302566 SLA/LP 51091 4 24801972 NM_153825 NP_722547 C/G K392N minus 14605429 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21368 rs2302566 SLA/LP 51091 4 24801972 NM_153825 NP_722547 C/G K392N minus 24165718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21369 rs2302566 SLA/LP 51091 4 24801972 NM_153825 NP_722547 C/G K392N minus 24165718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21370 rs2302566 SLA/LP 51091 4 24801972 NM_153825 NP_722547 C/G K392N minus 24165718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 4p15.31 soluble liver antigen/liver pancreas antigen 21371 rs2302588 WDR21 26094 14 72474505 NM_015604 NP_056419 C/G W22C minus 3248897 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.15 120 "by cluster,freq" 14q24.3 WD repeat domain 21 21372 rs2302588 WDR21 26094 14 72474505 NM_181341 NP_851938 C/G W22C minus 3248897 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.15 120 "by cluster,freq" 14q24.3 WD repeat domain 21 21373 rs2302612 IL1RL2 8808 2 102310226 NM_003854 NP_003845 A/G L550P minus 3248933 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.22 121 "by doubleHit,freq,cluster" 2q12 interleukin 1 receptor-like 2 21374 rs2302669 HELZ 9931 17 62645241 XM_375485 XP_375485 A/G C48R plus 3249014 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 HapMap 17q24.3 helicase with zinc finger domain 21375 rs2302669 HELZ 9931 17 62645241 XM_375485 XP_375485 A/G C48R plus 3249014 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 17q24.3 helicase with zinc finger domain 21376 rs2302685 LRP6 4040 12 12193165 NM_002336 NP_002327 C/T V1062I plus 6570189 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 121 "HapMap,doubleHit,freq,cluster" 12p11-p13 low density lipoprotein receptor-related protein 6 21377 rs2302686 LRP6 4040 12 12203995 NM_002336 NP_002327 C/G S817C plus 3249035 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12p11-p13 low density lipoprotein receptor-related protein 6 21378 rs2302757 CUL4A 8451 13 112957340 NM_003589 NP_003580 A/G K544R plus 3249124 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.33 123 "HapMap,doubleHit,freq,cluster" 13q34 cullin 4A 21379 rs2302757 CUL4A 8451 13 112957340 NM_003589 NP_003580 A/G K544R plus 13253050 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 123 "HapMap,doubleHit,freq,cluster" 13q34 cullin 4A 21380 rs2302757 CUL4A 8451 13 112957340 NM_003589 NP_003580 A/G K544R plus 24180220 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 13q34 cullin 4A 21381 rs2302757 CUL4A 8451 13 112957340 NM_003589 NP_003580 A/G K544R plus 24180220 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 13q34 cullin 4A 21382 rs2302757 CUL4A 8451 13 112957340 NM_003589 NP_003580 A/G K544R plus 24180220 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 13q34 cullin 4A 21383 rs2302787 CRELD1 78987 3 9954713 NM_015513 NP_056328 C/G P128R plus 3249162 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.04 100 HapMap 3p25.3 cysteine-rich with EGF-like domains 1 21384 rs2302787 CRELD1 78987 3 9954713 NM_015513 NP_056328 C/G P128R plus 3249162 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 3p25.3 cysteine-rich with EGF-like domains 1 21385 rs2302819 EHHADH 1962 3 186404996 NM_001966 NP_001957 A/G A274T minus 3249201 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.12 100 HapMap 3q26.3-q28 "enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" 21386 rs2302819 EHHADH 1962 3 186404996 NM_001966 NP_001957 A/G A274T minus 3249201 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 3q26.3-q28 "enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" 21387 rs2302824 CPA5 93979 7 129602325 NM_080385 NP_525124 C/T T416M plus 3249206 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 100 by freq 7q32 carboxypeptidase A5 21388 rs2302878 PSME4 23198 2 54047587 NM_014614 NP_055429 C/T I758V plus 3249268 738 YUSUKE JBIC-ALLELE Japanese (752) 1272 0.34 123 "by submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 21389 rs2302878 PSME4 23198 2 54047587 NM_014614 NP_055429 C/T I758V plus 24142569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 21390 rs2302878 PSME4 23198 2 54047587 NM_014614 NP_055429 C/T I758V plus 24142569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 21391 rs2302878 PSME4 23198 2 54047587 NM_014614 NP_055429 C/T I758V plus 24142569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 2p16.3 "proteasome (prosome, macropain) activator subunit 4" 21392 rs2302924 BAZ2B 29994 2 160112970 NM_013450 NP_038478 G/T G506V minus 3249335 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0 100 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 21393 rs2302947 SULT2B1 6820 19 53791880 NM_004605 NP_004596 C/T V225I minus 3249364 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 21394 rs2302947 SULT2B1 6820 19 53791880 NM_004605 NP_004596 C/T V225I minus 3249364 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 21395 rs2302947 SULT2B1 6820 19 53791880 NM_177973 NP_814444 C/T V240I minus 3249364 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 21396 rs2302947 SULT2B1 6820 19 53791880 NM_177973 NP_814444 C/T V240I minus 3249364 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 21397 rs2302951 GRWD1 83743 19 53646233 NM_031485 NP_113673 C/T R319Q minus 3249369 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.15 120 "HapMap,freq,cluster" 19q13.33 glutamate-rich WD repeat containing 1 21398 rs2302951 GRWD1 83743 19 53646233 NM_031485 NP_113673 C/T R319Q minus 3249369 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.17 120 "HapMap,freq,cluster" 19q13.33 glutamate-rich WD repeat containing 1 21399 rs2302970 ANKRD27 84079 19 37790472 NM_032139 NP_115515 C/G P761R minus 3249392 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 100 "HapMap,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 21400 rs2302970 ANKRD27 84079 19 37790472 NM_032139 NP_115515 C/G P761R minus 3249392 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 100 "HapMap,freq" 19q13.12 ankyrin repeat domain 27 (VPS9 domain) 21401 rs2302971 SITPEC 51295 19 11478079 NM_016581 NP_057665 A/G G406R minus 3249393 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.08 100 HapMap 19p13.2 likely ortholog of mouse signaling intermediate in Toll pathway-evolutionarily conserved 21402 rs2302971 SITPEC 51295 19 11478079 NM_016581 NP_057665 A/G G406R minus 3249393 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19p13.2 likely ortholog of mouse signaling intermediate in Toll pathway-evolutionarily conserved 21403 rs2302980 RHOBTB3 22836 5 95093378 NM_014899 NP_055714 C/G P21R plus 3249407 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 100 HapMap 5q15 Rho-related BTB domain containing 3 21404 rs2302980 RHOBTB3 22836 5 95093378 NM_014899 NP_055714 C/G P21R plus 3249407 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5q15 Rho-related BTB domain containing 3 21405 rs2303007 GFPT2 9945 5 179673433 NM_005110 NP_005101 C/T I471V plus 3249454 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.38 100 "by submitter,freq" 5q34-q35 glutamine-fructose-6-phosphate transaminase 2 21406 rs2303015 NDP52 10241 17 44284907 NM_005831 NP_005822 A/G V248A minus 3249463 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.04 120 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 21407 rs2303015 NDP52 10241 17 44284907 NM_005831 NP_005822 A/G V248A minus 3249463 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 17q21.33 nuclear domain 10 protein 21408 rs2303016 NDP52 10241 17 44283966 NM_005831 NP_005822 C/T G227R minus 3249464 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1482 0 100 by freq 17q21.33 nuclear domain 10 protein 21409 rs2303018 TNIP1 10318 5 150421931 NM_006058 NP_006049 A/G P103S plus 3249467 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.03 100 by freq 5q32-q33.1 TNFAIP3 interacting protein 1 21410 rs2303053 PPFIA3 8541 19 54331814 NM_003660 NP_003651 G/T A563S plus 3249509 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.24 123 "by doubleHit,freq,cluster" 19q13.33 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" 21411 rs2303053 PPFIA3 8541 19 54331814 NM_003660 NP_003651 G/T A563S plus 23812962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 19q13.33 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" 21412 rs2303053 PPFIA3 8541 19 54331814 NM_003660 NP_003651 G/T A563S plus 23812962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 19q13.33 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" 21413 rs2303053 PPFIA3 8541 19 54331814 NM_003660 NP_003651 G/T A563S plus 23812962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 19q13.33 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" 21414 rs2303063 SPINK5 11005 5 147460220 NM_006846 NP_006837 A/G S368N plus 24194709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21415 rs2303063 SPINK5 11005 5 147460220 NM_006846 NP_006837 A/G S368N plus 24194709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21416 rs2303063 SPINK5 11005 5 147460220 NM_006846 NP_006837 A/G S368N plus 24194709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21417 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.47 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21418 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 901 AFFY AfAm 6 0.5 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21419 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 902 AFFY Caucasian 18 0.28 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21420 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 903 AFFY Asian 5 0.5 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21421 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 904 AFFY CEPH 12 0.17 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21422 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 3249520 905 AFFY PDpanel 44 0.25 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21423 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 14631496 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21424 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 23761401 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21425 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 23761401 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21426 rs2303064 SPINK5 11005 5 147460273 NM_006846 NP_006837 A/G D386N plus 23761401 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21427 rs2303067 SPINK5 11005 5 147461148 NM_006846 NP_006837 A/G K420E plus 3249523 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.43 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21428 rs2303067 SPINK5 11005 5 147461148 NM_006846 NP_006837 A/G K420E plus 24194728 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21429 rs2303067 SPINK5 11005 5 147461148 NM_006846 NP_006837 A/G K420E plus 24194728 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21430 rs2303067 SPINK5 11005 5 147461148 NM_006846 NP_006837 A/G K420E plus 24194728 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 21431 rs2303077 HMMR 3161 5 162833699 NM_012484 NP_036616 C/G N320K plus 3249534 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21432 rs2303077 HMMR 3161 5 162833699 NM_012485 NP_036617 C/G N305K plus 3249534 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21433 rs2303078 HMMR 3161 5 162833734 NM_012484 NP_036616 A/G R332H plus 23940124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21434 rs2303078 HMMR 3161 5 162833734 NM_012484 NP_036616 A/G R332H plus 23940124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21435 rs2303078 HMMR 3161 5 162833734 NM_012484 NP_036616 A/G R332H plus 23940124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21436 rs2303078 HMMR 3161 5 162833734 NM_012485 NP_036617 A/G R317H plus 23940124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21437 rs2303078 HMMR 3161 5 162833734 NM_012485 NP_036617 A/G R317H plus 23940124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21438 rs2303078 HMMR 3161 5 162833734 NM_012485 NP_036617 A/G R317H plus 23940124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by submitter,freq,cluster" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 21439 rs2303080 MTRR 4552 5 7931424 NM_002454 NP_002445 A/T S257T plus 3249539 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.12 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21440 rs2303080 MTRR 4552 5 7931424 NM_002454 NP_002445 A/T S257T plus 3249539 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21441 rs2303080 MTRR 4552 5 7931424 NM_002454 NP_002445 A/T S257T plus 23900154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21442 rs2303080 MTRR 4552 5 7931424 NM_002454 NP_002445 A/T S257T plus 23900154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21443 rs2303080 MTRR 4552 5 7931424 NM_002454 NP_002445 A/T S257T plus 23900154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21444 rs2303080 MTRR 4552 5 7931424 NM_024010 NP_076915 A/T S284T plus 3249539 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.12 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21445 rs2303080 MTRR 4552 5 7931424 NM_024010 NP_076915 A/T S284T plus 3249539 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21446 rs2303080 MTRR 4552 5 7931424 NM_024010 NP_076915 A/T S284T plus 23900154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21447 rs2303080 MTRR 4552 5 7931424 NM_024010 NP_076915 A/T S284T plus 23900154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21448 rs2303080 MTRR 4552 5 7931424 NM_024010 NP_076915 A/T S284T plus 23900154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,freq,cluster" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 21449 rs2303098 COL5A3 50509 19 9977508 NM_015719 NP_056534 A/G R134H minus 3249561 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.09 100 "HapMap,freq" 19p13.2 "collagen, type V, alpha 3" 21450 rs2303098 COL5A3 50509 19 9977508 NM_015719 NP_056534 A/G R134H minus 3249561 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 100 "HapMap,freq" 19p13.2 "collagen, type V, alpha 3" 21451 rs2303100 OLFM2 93145 19 9829434 NM_058164 NP_477512 A/G R106Q minus 3249563 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.29 123 "HapMap,freq,cluster" 19p13.2 olfactomedin 2 21452 rs2303100 OLFM2 93145 19 9829434 NM_058164 NP_477512 A/G R106Q minus 3249563 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.44 123 "HapMap,freq,cluster" 19p13.2 olfactomedin 2 21453 rs2303100 OLFM2 93145 19 9829434 NM_058164 NP_477512 A/G R106Q minus 24597573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,freq,cluster" 19p13.2 olfactomedin 2 21454 rs2303100 OLFM2 93145 19 9829434 NM_058164 NP_477512 A/G R106Q minus 24597573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.2 olfactomedin 2 21455 rs2303100 OLFM2 93145 19 9829434 NM_058164 NP_477512 A/G R106Q minus 24597573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,freq,cluster" 19p13.2 olfactomedin 2 21456 rs2303138 LNPEP 4012 5 96376466 NM_005575 NP_005566 A/G A763T plus 3249618 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.35 123 "HapMap,freq" 5q15 leucyl/cystinyl aminopeptidase 21457 rs2303138 LNPEP 4012 5 96376466 NM_005575 NP_005566 A/G A763T plus 3249618 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq" 5q15 leucyl/cystinyl aminopeptidase 21458 rs2303138 LNPEP 4012 5 96376466 NM_005575 NP_005566 A/G A763T plus 24171860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq" 5q15 leucyl/cystinyl aminopeptidase 21459 rs2303138 LNPEP 4012 5 96376466 NM_005575 NP_005566 A/G A763T plus 24171860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 5q15 leucyl/cystinyl aminopeptidase 21460 rs2303138 LNPEP 4012 5 96376466 NM_005575 NP_005566 A/G A763T plus 24171860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq" 5q15 leucyl/cystinyl aminopeptidase 21461 rs2303146 PEX11G 92960 19 7453074 NM_080662 NP_542393 A/C C91W plus 3249626 738 YUSUKE JBIC-ALLELE Japanese (752) 722 0.49 123 "HapMap,submitter,freq,cluster" 19p13.3 peroxisomal biogenesis factor 11 gamma 21462 rs2303146 PEX11G 92960 19 7453074 NM_080662 NP_542393 A/C C91W plus 3249626 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.32 123 "HapMap,submitter,freq,cluster" 19p13.3 peroxisomal biogenesis factor 11 gamma 21463 rs2303146 PEX11G 92960 19 7453074 NM_080662 NP_542393 A/C C91W plus 23978999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.29 123 "HapMap,submitter,freq,cluster" 19p13.3 peroxisomal biogenesis factor 11 gamma 21464 rs2303146 PEX11G 92960 19 7453074 NM_080662 NP_542393 A/C C91W plus 23978999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "HapMap,submitter,freq,cluster" 19p13.3 peroxisomal biogenesis factor 11 gamma 21465 rs2303146 PEX11G 92960 19 7453074 NM_080662 NP_542393 A/C C91W plus 23978999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.48 123 "HapMap,submitter,freq,cluster" 19p13.3 peroxisomal biogenesis factor 11 gamma 21466 rs2303164 CCL25 6370 19 8028737 NM_148888 NP_683686 A/G V82I plus 4384997 649 FHCRC POPU1 USA (20) 40 0.13 121 "HapMap,doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 21467 rs2303164 CCL25 6370 19 8028737 NM_148888 NP_683686 A/G V82I plus 4384997 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq,cluster" 19p13.2 chemokine (C-C motif) ligand 25 21468 rs2303193 ELA2A 63036 1 15539317 NM_033440 NP_254275 C/T N257S minus 3249700 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0 100 by freq 1p36.13 elastase 2A 21469 rs2303217 DC13 56942 16 79588469 NM_020188 NP_064573 C/G T11S plus 3249730 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 123 "HapMap,cluster" 16q23.2 DC13 protein 21470 rs2303217 DC13 56942 16 79588469 NM_020188 NP_064573 C/G T11S plus 3249730 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 16q23.2 DC13 protein 21471 rs2303217 DC13 56942 16 79588469 NM_020188 NP_064573 C/G T11S plus 23462532 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 16q23.2 DC13 protein 21472 rs2303217 DC13 56942 16 79588469 NM_020188 NP_064573 C/G T11S plus 23462532 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 16q23.2 DC13 protein 21473 rs2303217 DC13 56942 16 79588469 NM_020188 NP_064573 C/G T11S plus 23462532 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 16q23.2 DC13 protein 21474 rs2303255 QPRT 23475 16 29613945 NM_014298 NP_055113 A/G A158V minus 3249780 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "HapMap,freq,cluster" 16p12.1 quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 21475 rs2303255 QPRT 23475 16 29613945 NM_014298 NP_055113 A/G A158V minus 3249780 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,freq,cluster" 16p12.1 quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 21476 rs2303255 QPRT 23475 16 29613945 NM_014298 NP_055113 A/G A158V minus 24683303 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,freq,cluster" 16p12.1 quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 21477 rs2303255 QPRT 23475 16 29613945 NM_014298 NP_055113 A/G A158V minus 24683303 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 16p12.1 quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 21478 rs2303255 QPRT 23475 16 29613945 NM_014298 NP_055113 A/G A158V minus 24683303 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 16p12.1 quinolinate phosphoribosyltransferase (nicotinate-nucleotide pyrophosphorylase (carboxylating)) 21479 rs2303291 ITSN2 50618 2 24342835 NM_006277 NP_006268 C/T A1533T plus 3249822 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.1 119 "HapMap,freq,cluster" 2pter-p25.1 intersectin 2 21480 rs2303291 ITSN2 50618 2 24342835 NM_006277 NP_006268 C/T A1533T plus 3249822 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 119 "HapMap,freq,cluster" 2pter-p25.1 intersectin 2 21481 rs2303291 ITSN2 50618 2 24342835 NM_019595 NP_062541 C/T A1506T plus 3249822 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.1 119 "HapMap,freq,cluster" 2pter-p25.1 intersectin 2 21482 rs2303291 ITSN2 50618 2 24342835 NM_019595 NP_062541 C/T A1506T plus 3249822 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 119 "HapMap,freq,cluster" 2pter-p25.1 intersectin 2 21483 rs2303312 AKR1B10 57016 7 133673939 NM_020299 NP_064695 C/T P87S plus 3249847 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.23 100 by freq 7q33 "aldo-keto reductase family 1, member B10 (aldose reductase)" 21484 rs2303374 MEGF11 84465 15 63978131 NM_032445 NP_115821 C/T I913T minus 3249930 738 YUSUKE JBIC-ALLELE Japanese (752) 1440 0.03 100 by freq 15q22.2 MEGF11 protein 21485 rs2303405 VPS13C 54832 15 60041083 NM_017684 NP_060154 C/T Y1259C plus 3249973 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.03 121 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 21486 rs2303405 VPS13C 54832 15 60041083 NM_017684 NP_060154 C/T Y1259C plus 3249973 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 121 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 21487 rs2303436 DLAT 1737 11 111401534 NM_001931 NP_001922 A/G A43V minus 3250013 738 YUSUKE JBIC-ALLELE Japanese (752) 740 0.46 120 "HapMap,doubleHit,freq,cluster" 11q23.1 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 21488 rs2303436 DLAT 1737 11 111401534 NM_001931 NP_001922 A/G A43V minus 3250013 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,freq,cluster" 11q23.1 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 21489 rs2303436 DLAT 1737 11 111401534 NM_001931 NP_001922 A/G A43V minus 15806006 1303 SEQUENOM CEPH CEPH (92) 92 0.35 120 "HapMap,doubleHit,freq,cluster" 11q23.1 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 21490 rs2303460 ST18 9705 8 53236539 NM_014682 NP_055497 C/T R515C minus 3250042 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 100 HapMap 8q11.22 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) 21491 rs2303460 ST18 9705 8 53236539 NM_014682 NP_055497 C/T R515C minus 3250042 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 8q11.22 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) 21492 rs2303510 FHOD3 80206 18 32578089 XM_371114 XP_371114 C/T V1151I minus 3250110 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "HapMap,freq,cluster" 18q12 formin homology 2 domain containing 3 21493 rs2303510 FHOD3 80206 18 32578089 XM_371114 XP_371114 C/T V1151I minus 3250110 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,freq,cluster" 18q12 formin homology 2 domain containing 3 21494 rs2303510 FHOD3 80206 18 32578089 XM_371114 XP_371114 C/T V1151I minus 23522329 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq,cluster" 18q12 formin homology 2 domain containing 3 21495 rs2303510 FHOD3 80206 18 32578089 XM_371114 XP_371114 C/T V1151I minus 23522329 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,freq,cluster" 18q12 formin homology 2 domain containing 3 21496 rs2303510 FHOD3 80206 18 32578089 XM_371114 XP_371114 C/T V1151I minus 23522329 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "HapMap,freq,cluster" 18q12 formin homology 2 domain containing 3 21497 rs2303549 LY75 4065 2 160517566 NM_002349 NP_002340 C/G T1202S plus 3250167 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 2q24 lymphocyte antigen 75 21498 rs2303576 EIF3S1 8669 15 42616700 NM_003758 NP_003749 G/T A6S plus 3250205 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.01 100 by freq 15q15.1 "eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa" 21499 rs2303578 EIF3S1 8669 15 42636990 NM_003758 NP_003749 A/G A141T plus 3250207 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.07 100 "HapMap,freq" 15q15.1 "eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa" 21500 rs2303578 EIF3S1 8669 15 42636990 NM_003758 NP_003749 A/G A141T plus 3250207 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 100 "HapMap,freq" 15q15.1 "eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa" 21501 rs2303579 NEDD4 4734 15 53940021 NM_006154 NP_006145 C/T N279S plus 3250208 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21502 rs2303579 NEDD4 4734 15 53940021 NM_006154 NP_006145 C/T N279S plus 12328524 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21503 rs2303579 NEDD4 4734 15 53940021 NM_006154 NP_006145 C/T N279S plus 24138881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21504 rs2303579 NEDD4 4734 15 53940021 NM_006154 NP_006145 C/T N279S plus 24138881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21505 rs2303579 NEDD4 4734 15 53940021 NM_006154 NP_006145 C/T N279S plus 24138881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21506 rs2303579 NEDD4 4734 15 53940021 NM_198400 NP_940682 C/T N626S plus 3250208 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21507 rs2303579 NEDD4 4734 15 53940021 NM_198400 NP_940682 C/T N626S plus 12328524 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21508 rs2303579 NEDD4 4734 15 53940021 NM_198400 NP_940682 C/T N626S plus 24138881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21509 rs2303579 NEDD4 4734 15 53940021 NM_198400 NP_940682 C/T N626S plus 24138881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21510 rs2303579 NEDD4 4734 15 53940021 NM_198400 NP_940682 C/T N626S plus 24138881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21511 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 12326579 901 AFFY AfAm 12 0.42 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21512 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 12326579 902 AFFY Caucasian 22 0.14 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21513 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 12326579 903 AFFY Asian 12 0.25 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21514 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 12326579 904 AFFY CEPH 12 0.33 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21515 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 12326579 905 AFFY PDpanel 48 0.33 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21516 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 24138882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21517 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 24138882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21518 rs2303580 NEDD4 4734 15 53940164 NM_006154 NP_006145 C/T R260Q plus 24138882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21519 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 12326579 901 AFFY AfAm 12 0.42 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21520 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 12326579 902 AFFY Caucasian 22 0.14 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21521 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 12326579 903 AFFY Asian 12 0.25 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21522 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 12326579 904 AFFY CEPH 12 0.33 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21523 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 12326579 905 AFFY PDpanel 48 0.33 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21524 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 24138882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21525 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 24138882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21526 rs2303580 NEDD4 4734 15 53940164 NM_198400 NP_940682 C/T R607Q plus 24138882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q "neural precursor cell expressed, developmentally down-regulated 4" 21527 rs2303603 DYSF 8291 2 71739509 NM_003494 NP_003485 A/G R1242H plus 3250246 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 123 "by cluster,freq" 2p13.3-p13.1 "dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)" 21528 rs2303603 DYSF 8291 2 71739509 NM_003494 NP_003485 A/G R1242H plus 23875464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2p13.3-p13.1 "dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)" 21529 rs2303603 DYSF 8291 2 71739509 NM_003494 NP_003485 A/G R1242H plus 23875464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2p13.3-p13.1 "dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)" 21530 rs2303603 DYSF 8291 2 71739509 NM_003494 NP_003485 A/G R1242H plus 23875464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 2p13.3-p13.1 "dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)" 21531 rs2303635 AMOTL2 51421 3 135569054 NM_016201 NP_057285 C/G A342P plus 3250286 738 YUSUKE JBIC-ALLELE Japanese (752) 1422 0.05 120 "by cluster,freq" 3q21-q22 angiomotin like 2 21532 rs2303654 LHFPL2 10184 5 77841489 NM_005779 NP_005770 A/G I102V minus 3250309 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "HapMap,freq,cluster" 5q14.1 lipoma HMGIC fusion partner-like 2 21533 rs2303654 LHFPL2 10184 5 77841489 NM_005779 NP_005770 A/G I102V minus 3250309 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 5q14.1 lipoma HMGIC fusion partner-like 2 21534 rs2303654 LHFPL2 10184 5 77841489 NM_005779 NP_005770 A/G I102V minus 23973865 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 5q14.1 lipoma HMGIC fusion partner-like 2 21535 rs2303654 LHFPL2 10184 5 77841489 NM_005779 NP_005770 A/G I102V minus 23973865 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5q14.1 lipoma HMGIC fusion partner-like 2 21536 rs2303654 LHFPL2 10184 5 77841489 NM_005779 NP_005770 A/G I102V minus 23973865 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,freq,cluster" 5q14.1 lipoma HMGIC fusion partner-like 2 21537 rs2303688 SCGF 6320 19 55919137 NM_002975 NP_002966 C/G P104R minus 3250361 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 100 HapMap 19q13.3 stem cell growth factor; lymphocyte secreted C-type lectin 21538 rs2303688 SCGF 6320 19 55919137 NM_002975 NP_002966 C/G P104R minus 3250361 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.3 stem cell growth factor; lymphocyte secreted C-type lectin 21539 rs2303690 ELSPBP1 64100 19 53217319 NM_022142 NP_071425 C/T E199K minus 3250363 738 YUSUKE JBIC-ALLELE Japanese (752) 896 0.14 120 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 epididymal sperm binding protein 1 21540 rs2303690 ELSPBP1 64100 19 53217319 NM_022142 NP_071425 C/T E199K minus 10930054 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.48 120 "HapMap,doubleHit,submitter,freq,cluster" 19q13.33 epididymal sperm binding protein 1 21541 rs2303738 AHRR 57491 5 486056 NM_020731 NP_065782 A/C G387V minus 3250434 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 100 by freq 5p15.3 aryl-hydrocarbon receptor repressor 21542 rs2303743 LIFR 3977 5 38529631 NM_002310 NP_002301 C/T I633M plus 3250444 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.04 120 "HapMap,cluster" 5p13-p12 leukemia inhibitory factor receptor 21543 rs2303743 LIFR 3977 5 38529631 NM_002310 NP_002301 C/T I633M plus 3250444 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 5p13-p12 leukemia inhibitory factor receptor 21544 rs2303743 LIFR 3977 5 38529631 NM_002310 NP_002301 C/T I633M plus 16338635 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.02 120 "HapMap,cluster" 5p13-p12 leukemia inhibitory factor receptor 21545 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 3250445 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21546 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 16316153 693 EGP_SNPS PDR90 NIHPDR 178 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21547 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 16316153 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21548 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 24073104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21549 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 24073104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21550 rs2303744 PLA2G4C 8605 19 53294760 NM_003706 NP_003697 A/G I143V minus 24073104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 21551 rs2303759 DKKL1 27120 19 54560863 NM_014419 NP_055234 G/T M109R plus 3250466 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.32 121 "HapMap,freq,cluster" 19q13.33 soggy-1 gene 21552 rs2303759 DKKL1 27120 19 54560863 NM_014419 NP_055234 G/T M109R plus 21527610 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 121 "HapMap,freq,cluster" 19q13.33 soggy-1 gene 21553 rs2303783 CNGB1 1258 16 56523221 NM_001297 NP_001288 A/C L473I minus 3250493 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.02 100 by freq 16q13 cyclic nucleotide gated channel beta 1 21554 rs2303785 CNGB1 1258 16 56495289 NM_001297 NP_001288 A/G K905R minus 3250500 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 123 "HapMap,submitter,freq,cluster" 16q13 cyclic nucleotide gated channel beta 1 21555 rs2303785 CNGB1 1258 16 56495289 NM_001297 NP_001288 A/G K905R minus 3250500 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,submitter,freq,cluster" 16q13 cyclic nucleotide gated channel beta 1 21556 rs2303785 CNGB1 1258 16 56495289 NM_001297 NP_001288 A/G K905R minus 24614162 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,submitter,freq,cluster" 16q13 cyclic nucleotide gated channel beta 1 21557 rs2303785 CNGB1 1258 16 56495289 NM_001297 NP_001288 A/G K905R minus 24614162 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "HapMap,submitter,freq,cluster" 16q13 cyclic nucleotide gated channel beta 1 21558 rs2303785 CNGB1 1258 16 56495289 NM_001297 NP_001288 A/G K905R minus 24614162 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 16q13 cyclic nucleotide gated channel beta 1 21559 rs2303790 CETP 1071 16 55574793 NM_000078 NP_000069 A/G D459G plus 3250505 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 123 "HapMap,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 21560 rs2303790 CETP 1071 16 55574793 NM_000078 NP_000069 A/G D459G plus 3250505 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 21561 rs2303790 CETP 1071 16 55574793 NM_000078 NP_000069 A/G D459G plus 24076902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 21562 rs2303790 CETP 1071 16 55574793 NM_000078 NP_000069 A/G D459G plus 24076902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 21563 rs2303790 CETP 1071 16 55574793 NM_000078 NP_000069 A/G D459G plus 24076902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 16q21 "cholesteryl ester transfer protein, plasma" 21564 rs2303797 ARHGEF1 9138 19 47094433 NM_004706 NP_004697 C/T P375L plus 3250519 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21565 rs2303797 ARHGEF1 9138 19 47094433 NM_004706 NP_004697 C/T P375L plus 3250519 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21566 rs2303797 ARHGEF1 9138 19 47094433 NM_198977 NP_945328 C/T P342L plus 3250519 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21567 rs2303797 ARHGEF1 9138 19 47094433 NM_198977 NP_945328 C/T P342L plus 3250519 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21568 rs2303797 ARHGEF1 9138 19 47094433 NM_199002 NP_945353 C/T P390L plus 3250519 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21569 rs2303797 ARHGEF1 9138 19 47094433 NM_199002 NP_945353 C/T P390L plus 3250519 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.13 Rho guanine nucleotide exchange factor (GEF) 1 21570 rs2303810 THEG 51298 19 323661 NM_016585 NP_057669 A/C R202I plus 3250532 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.48 100 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 21571 rs2303810 THEG 51298 19 323661 NM_016585 NP_057669 A/C R202I plus 3250532 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.07 100 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 21572 rs2303810 THEG 51298 19 323661 NM_199202 NP_954672 A/C R178I plus 3250532 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.48 100 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 21573 rs2303810 THEG 51298 19 323661 NM_199202 NP_954672 A/C R178I plus 3250532 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.07 100 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 21574 rs2303857 DNCLI1 51143 3 32553509 NM_016141 NP_057225 A/G Q277R minus 24283285 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.06 123 "HapMap,freq" 3p22.3 "dynein, cytoplasmic, light intermediate polypeptide 1" 21575 rs2303857 DNCLI1 51143 3 32553509 NM_016141 NP_057225 A/G Q277R minus 24283285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq" 3p22.3 "dynein, cytoplasmic, light intermediate polypeptide 1" 21576 rs2303857 DNCLI1 51143 3 32553509 NM_016141 NP_057225 A/G Q277R minus 24283285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq" 3p22.3 "dynein, cytoplasmic, light intermediate polypeptide 1" 21577 rs2303857 DNCLI1 51143 3 32553509 NM_016141 NP_057225 A/G Q277R minus 24283285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 3p22.3 "dynein, cytoplasmic, light intermediate polypeptide 1" 21578 rs2303909 EFG1 85476 3 159849602 NM_024996 NP_079272 C/T V215I minus 10054264 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,freq,cluster" 3q25.1-q26.2 mitochondrial elongation factor G1 21579 rs2303909 EFG1 85476 3 159849602 NM_024996 NP_079272 C/T V215I minus 24260627 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 3q25.1-q26.2 mitochondrial elongation factor G1 21580 rs2303909 EFG1 85476 3 159849602 NM_024996 NP_079272 C/T V215I minus 24260627 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 3q25.1-q26.2 mitochondrial elongation factor G1 21581 rs2303909 EFG1 85476 3 159849602 NM_024996 NP_079272 C/T V215I minus 24260627 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 3q25.1-q26.2 mitochondrial elongation factor G1 21582 rs2303914 TAF1B 9014 2 9934284 NM_005680 NP_005671 G/T A6S plus 3250669 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.25 123 "by doubleHit,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 21583 rs2303914 TAF1B 9014 2 9934284 NM_005680 NP_005671 G/T A6S plus 23706084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 21584 rs2303914 TAF1B 9014 2 9934284 NM_005680 NP_005671 G/T A6S plus 23706084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.47 123 "by doubleHit,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 21585 rs2303914 TAF1B 9014 2 9934284 NM_005680 NP_005671 G/T A6S plus 23706084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.34 123 "by doubleHit,freq,cluster" 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 21586 rs2303920 TFCP2L2 29841 2 10076928 NM_014552 NP_055367 A/G V397I plus 9923225 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21587 rs2303920 TFCP2L2 29841 2 10076928 NM_014552 NP_055367 A/G V397I plus 23706392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21588 rs2303920 TFCP2L2 29841 2 10076928 NM_014552 NP_055367 A/G V397I plus 23706392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21589 rs2303920 TFCP2L2 29841 2 10076928 NM_014552 NP_055367 A/G V397I plus 23706392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21590 rs2303920 TFCP2L2 29841 2 10076928 NM_198182 NP_937825 A/G V208I plus 9923225 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21591 rs2303920 TFCP2L2 29841 2 10076928 NM_198182 NP_937825 A/G V208I plus 23706392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21592 rs2303920 TFCP2L2 29841 2 10076928 NM_198182 NP_937825 A/G V208I plus 23706392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21593 rs2303920 TFCP2L2 29841 2 10076928 NM_198182 NP_937825 A/G V208I plus 23706392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 2p25.1 transcription factor CP2-like 2 21594 rs2303927 ABCB8 11194 7 150176757 NM_007188 NP_009119 C/G S560C plus 3250685 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 100 HapMap 7q36 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" 21595 rs2303927 ABCB8 11194 7 150176757 NM_007188 NP_009119 C/G S560C plus 3250685 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 7q36 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" 21596 rs2303929 SLC4A2 6522 7 150198962 NM_003040 NP_003031 A/G G26E plus 3250687 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.32 121 "by cluster,freq" 7q35-q36 "solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1)" 21597 rs2303956 MTSS1 9788 8 125644325 NM_014751 NP_055566 A/T N305I minus 3250720 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 8p22 metastasis suppressor 1 21598 rs2303982 SEMA5B 54437 3 124113013 NM_018987 NP_061860 G/T T1034P plus 3250753 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.28 119 "HapMap,doubleHit,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 21599 rs2303982 SEMA5B 54437 3 124113013 NM_018987 NP_061860 G/T T1034P plus 10022137 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 119 "HapMap,doubleHit,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 21600 rs2303983 SEMA5B 54437 3 124113036 NM_018987 NP_061860 C/T D1026G plus 3250754 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.29 119 "by doubleHit,freq,cluster" 3q21.1 "sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B" 21601 rs2304024 FAT2 2196 5 150889006 NM_001447 NP_001438 C/T R3318W minus 3250802 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.17 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21602 rs2304024 FAT2 2196 5 150889006 NM_001447 NP_001438 C/T R3318W minus 3250802 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21603 rs2304024 FAT2 2196 5 150889006 NM_001447 NP_001438 C/T R3318W minus 24339307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21604 rs2304024 FAT2 2196 5 150889006 NM_001447 NP_001438 C/T R3318W minus 24339307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21605 rs2304024 FAT2 2196 5 150889006 NM_001447 NP_001438 C/T R3318W minus 24339307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21606 rs2304029 FAT2 2196 5 150871965 NM_001447 NP_001438 C/G Q3953H plus 3250807 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 123 "by submitter,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21607 rs2304029 FAT2 2196 5 150871965 NM_001447 NP_001438 C/G Q3953H plus 24686699 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21608 rs2304029 FAT2 2196 5 150871965 NM_001447 NP_001438 C/G Q3953H plus 24686699 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by submitter,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21609 rs2304029 FAT2 2196 5 150871965 NM_001447 NP_001438 C/G Q3953H plus 24686699 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21610 rs2304053 FAT2 2196 5 150923162 NM_001447 NP_001438 A/G P1164L plus 3250841 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.27 123 "HapMap,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21611 rs2304053 FAT2 2196 5 150923162 NM_001447 NP_001438 A/G P1164L plus 14655829 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21612 rs2304053 FAT2 2196 5 150923162 NM_001447 NP_001438 A/G P1164L plus 24686747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 22 0.5 123 "HapMap,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21613 rs2304053 FAT2 2196 5 150923162 NM_001447 NP_001438 A/G P1164L plus 24686747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.4 123 "HapMap,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21614 rs2304053 FAT2 2196 5 150923162 NM_001447 NP_001438 A/G P1164L plus 24686747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "HapMap,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 21615 rs2304114 VRK3 51231 19 55211150 NM_016440 NP_057524 C/T V28I plus 3250923 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 100 HapMap 19q13 vaccinia related kinase 3 21616 rs2304133 SIPA1L3 23094 19 43347289 XM_032278 XP_032278 A/G G1298S plus 3250947 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.01 123 "HapMap,freq" 19q13.13 signal-induced proliferation-associated 1 like 3 21617 rs2304133 SIPA1L3 23094 19 43347289 XM_032278 XP_032278 A/G G1298S plus 3250947 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 19q13.13 signal-induced proliferation-associated 1 like 3 21618 rs2304133 SIPA1L3 23094 19 43347289 XM_032278 XP_032278 A/G G1298S plus 24195602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 19q13.13 signal-induced proliferation-associated 1 like 3 21619 rs2304133 SIPA1L3 23094 19 43347289 XM_032278 XP_032278 A/G G1298S plus 24195602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 19q13.13 signal-induced proliferation-associated 1 like 3 21620 rs2304133 SIPA1L3 23094 19 43347289 XM_032278 XP_032278 A/G G1298S plus 24195602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq" 19q13.13 signal-induced proliferation-associated 1 like 3 21621 rs2304167 GP6 51206 19 60218893 NM_016363 NP_057447 C/T A249T plus 3250985 738 YUSUKE JBIC-ALLELE Japanese (752) 912 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 21622 rs2304167 GP6 51206 19 60218893 NM_016363 NP_057447 C/T A249T plus 3250985 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 21623 rs2304167 GP6 51206 19 60218893 NM_016363 NP_057447 C/T A249T plus 23778690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 21624 rs2304167 GP6 51206 19 60218893 NM_016363 NP_057447 C/T A249T plus 23778690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 21625 rs2304167 GP6 51206 19 60218893 NM_016363 NP_057447 C/T A249T plus 23778690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 19q13.4 glycoprotein VI (platelet) 21626 rs2304200 PGLYRP2 114770 19 15441658 NM_052890 NP_443122 C/T R476W minus 3251024 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 100 by freq 19p13.12 peptidoglycan recognition protein 2 21627 rs2304202 TSKS 60385 19 54940313 NM_021733 NP_068379 C/T D382G plus 3251026 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.07 123 "HapMap,doubleHit,freq,cluster" 19q13.3 testis-specific kinase substrate 21628 rs2304202 TSKS 60385 19 54940313 NM_021733 NP_068379 C/T D382G plus 10943484 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 123 "HapMap,doubleHit,freq,cluster" 19q13.3 testis-specific kinase substrate 21629 rs2304202 TSKS 60385 19 54940313 NM_021733 NP_068379 C/T D382G plus 23646010 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 19q13.3 testis-specific kinase substrate 21630 rs2304202 TSKS 60385 19 54940313 NM_021733 NP_068379 C/T D382G plus 23646010 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 19q13.3 testis-specific kinase substrate 21631 rs2304202 TSKS 60385 19 54940313 NM_021733 NP_068379 C/T D382G plus 23646010 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19q13.3 testis-specific kinase substrate 21632 rs2304208 SR-A1 58506 19 54849758 NM_021228 NP_067051 A/G M1146T minus 3251033 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 100 by freq 19q13.3-q13.4 serine arginine-rich pre-mRNA splicing factor SR-A1 21633 rs2304211 SBP1 90198 19 47574506 NM_178121 NP_835222 A/G P41L minus 3251036 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 100 HapMap 19q13.31 HBV pre-s2 binding protein 1 21634 rs2304211 SBP1 90198 19 47574506 NM_178121 NP_835222 A/G P41L minus 3251036 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.31 HBV pre-s2 binding protein 1 21635 rs2304224 KIR2DL1 3802 19 59973127 NM_014218 NP_055033 G/T V5F plus 3251051 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.09 116 "by cluster,freq" 19q13.4 "killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1" 21636 rs2304237 ICAM3 3385 19 10307568 NM_002162 NP_002153 C/T D143G plus 3251074 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.14 123 "HapMap,doubleHit,freq,cluster" 19p13.3-p13.2 intercellular adhesion molecule 3 21637 rs2304237 ICAM3 3385 19 10307568 NM_002162 NP_002153 C/T D143G plus 14709927 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 123 "HapMap,doubleHit,freq,cluster" 19p13.3-p13.2 intercellular adhesion molecule 3 21638 rs2304237 ICAM3 3385 19 10307568 NM_002162 NP_002153 C/T D143G plus 23756777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 19p13.3-p13.2 intercellular adhesion molecule 3 21639 rs2304237 ICAM3 3385 19 10307568 NM_002162 NP_002153 C/T D143G plus 23756777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "HapMap,doubleHit,freq,cluster" 19p13.3-p13.2 intercellular adhesion molecule 3 21640 rs2304237 ICAM3 3385 19 10307568 NM_002162 NP_002153 C/T D143G plus 23756777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 19p13.3-p13.2 intercellular adhesion molecule 3 21641 rs2304254 TYK2 7297 19 10336332 NM_003331 NP_003322 C/T R442Q plus 3251099 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 100 by freq 19p13.2 tyrosine kinase 2 21642 rs2304255 TYK2 7297 19 10336649 NM_003331 NP_003322 C/T G363S plus 20399254 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 121 "by cluster,freq" 19p13.2 tyrosine kinase 2 21643 rs2304256 TYK2 7297 19 10336652 NM_003331 NP_003322 A/C V362F plus 20399148 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 121 "by cluster,freq" 19p13.2 tyrosine kinase 2 21644 rs2304256 TYK2 7297 19 10336652 NM_003331 NP_003322 A/C V362F plus 20399148 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.3 121 "by cluster,freq" 19p13.2 tyrosine kinase 2 21645 rs2304305 THEA 26027 1 54774981 NM_015547 NP_056362 C/T M212I minus 3251162 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.19 100 by freq 1p32.3 "thioesterase, adipose associated" 21646 rs2304305 THEA 26027 1 54774981 NM_147161 NP_671517 C/T M212I minus 3251162 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.19 100 by freq 1p32.3 "thioesterase, adipose associated" 21647 rs2304306 THEA 26027 1 54772272 NM_015547 NP_056362 A/G P165L minus 3251165 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.17 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21648 rs2304306 THEA 26027 1 54772272 NM_015547 NP_056362 A/G P165L minus 23841174 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.04 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21649 rs2304306 THEA 26027 1 54772272 NM_015547 NP_056362 A/G P165L minus 23841174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21650 rs2304306 THEA 26027 1 54772272 NM_015547 NP_056362 A/G P165L minus 23841174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21651 rs2304306 THEA 26027 1 54772272 NM_015547 NP_056362 A/G P165L minus 23841174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21652 rs2304306 THEA 26027 1 54772272 NM_147161 NP_671517 A/G P165L minus 3251165 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.17 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21653 rs2304306 THEA 26027 1 54772272 NM_147161 NP_671517 A/G P165L minus 23841174 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.04 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21654 rs2304306 THEA 26027 1 54772272 NM_147161 NP_671517 A/G P165L minus 23841174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21655 rs2304306 THEA 26027 1 54772272 NM_147161 NP_671517 A/G P165L minus 23841174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21656 rs2304306 THEA 26027 1 54772272 NM_147161 NP_671517 A/G P165L minus 23841174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq,cluster" 1p32.3 "thioesterase, adipose associated" 21657 rs2304380 RYR3 6263 15 31642430 NM_001036 NP_001027 A/G I358T minus 3251269 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.07 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 21658 rs2304380 RYR3 6263 15 31642430 NM_001036 NP_001027 A/G I358T minus 24138431 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 21659 rs2304380 RYR3 6263 15 31642430 NM_001036 NP_001027 A/G I358T minus 24138431 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 21660 rs2304380 RYR3 6263 15 31642430 NM_001036 NP_001027 A/G I358T minus 24138431 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 21661 rs2304402 GREB1 9687 2 11724922 NM_014668 NP_055483 A/G D1687N plus 3251300 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.35 123 "by doubleHit,freq,cluster" 2p25.1 GREB1 protein 21662 rs2304402 GREB1 9687 2 11724922 NM_014668 NP_055483 A/G D1687N plus 24267443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "by doubleHit,freq,cluster" 2p25.1 GREB1 protein 21663 rs2304402 GREB1 9687 2 11724922 NM_014668 NP_055483 A/G D1687N plus 24267443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 2p25.1 GREB1 protein 21664 rs2304402 GREB1 9687 2 11724922 NM_014668 NP_055483 A/G D1687N plus 24267443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by doubleHit,freq,cluster" 2p25.1 GREB1 protein 21665 rs2304456 KNG1 3827 3 187927754 NM_000893 NP_000884 G/T I197M plus 3251368 738 YUSUKE JBIC-ALLELE Japanese (752) 932 0.14 100 "by submitter,freq" 3q27 kininogen 1 21666 rs2304472 PMM2 5373 16 8803200 NM_000303 NP_000294 A/T Q37L minus 3251390 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 HapMap 16p13.3-p13.2 phosphomannomutase 2 21667 rs2304472 PMM2 5373 16 8803200 NM_000303 NP_000294 A/T Q37L minus 3251390 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 16p13.3-p13.2 phosphomannomutase 2 21668 rs2304497 ACLY 47 17 37319300 NM_001096 NP_001087 G/T E175D plus 3251418 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21669 rs2304497 ACLY 47 17 37319300 NM_001096 NP_001087 G/T E175D plus 3251418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21670 rs2304497 ACLY 47 17 37319300 NM_001096 NP_001087 G/T E175D plus 24563395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21671 rs2304497 ACLY 47 17 37319300 NM_001096 NP_001087 G/T E175D plus 24563395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21672 rs2304497 ACLY 47 17 37319300 NM_001096 NP_001087 G/T E175D plus 24563395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21673 rs2304497 ACLY 47 17 37319300 NM_198830 NP_942127 G/T E175D plus 3251418 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21674 rs2304497 ACLY 47 17 37319300 NM_198830 NP_942127 G/T E175D plus 3251418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21675 rs2304497 ACLY 47 17 37319300 NM_198830 NP_942127 G/T E175D plus 24563395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21676 rs2304497 ACLY 47 17 37319300 NM_198830 NP_942127 G/T E175D plus 24563395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21677 rs2304497 ACLY 47 17 37319300 NM_198830 NP_942127 G/T E175D plus 24563395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 17q12-q21 ATP citrate lyase 21678 rs2304591 KIDINS220 57498 2 8824305 XM_291015 XP_291015 A/G R1308H minus 3251545 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 HapMap 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 21679 rs2304591 KIDINS220 57498 2 8824305 XM_291015 XP_291015 A/G R1308H minus 3251545 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2p24 likely homolog of rat kinase D-interacting substance of 220 kDa 21680 rs2304628 C1QDC1 65981 12 30768594 NM_023925 NP_076414 A/G S655L plus 3251587 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 100 HapMap 12p11 C1q domain containing 1 21681 rs2304629 C1QDC1 65981 12 30772980 NM_023925 NP_076414 C/T N551D plus 3251588 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0 100 HapMap 12p11 C1q domain containing 1 21682 rs2304629 C1QDC1 65981 12 30772980 NM_023925 NP_076414 C/T N551D plus 3251588 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12p11 C1q domain containing 1 21683 rs2304630 C1QDC1 65981 12 30773076 NM_023925 NP_076414 C/T M519V plus 3251589 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.39 121 "HapMap,doubleHit,freq,cluster" 12p11 C1q domain containing 1 21684 rs2304630 C1QDC1 65981 12 30773076 NM_023925 NP_076414 C/T M519V plus 11044738 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 121 "HapMap,doubleHit,freq,cluster" 12p11 C1q domain containing 1 21685 rs2304678 ABHD1 84696 2 27265158 NM_032604 NP_115993 C/G W371C plus 3251660 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.16 116 "by doubleHit,freq,cluster" 2p23.3 abhydrolase domain containing 1 21686 rs2304681 KHK 3795 2 27226903 NM_000221 NP_000212 A/G V49I plus 3251663 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.21 123 "by cluster,freq" 2p23.3-p23.2 ketohexokinase (fructokinase) 21687 rs2304681 KHK 3795 2 27226903 NM_006488 NP_006479 A/G V49I plus 3251663 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.21 123 "by cluster,freq" 2p23.3-p23.2 ketohexokinase (fructokinase) 21688 rs2304693 TBRG4 9238 7 44921907 NM_004749 NP_004740 A/G P57L plus 3251675 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.15 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21689 rs2304693 TBRG4 9238 7 44921907 NM_004749 NP_004740 A/G P57L plus 20314070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21690 rs2304693 TBRG4 9238 7 44921907 NM_004749 NP_004740 A/G P57L plus 24459521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21691 rs2304693 TBRG4 9238 7 44921907 NM_004749 NP_004740 A/G P57L plus 24459521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21692 rs2304693 TBRG4 9238 7 44921907 NM_004749 NP_004740 A/G P57L plus 24459521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21693 rs2304693 TBRG4 9238 7 44921907 NM_030900 NP_112162 A/G P57L plus 3251675 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.15 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21694 rs2304693 TBRG4 9238 7 44921907 NM_030900 NP_112162 A/G P57L plus 20314070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21695 rs2304693 TBRG4 9238 7 44921907 NM_030900 NP_112162 A/G P57L plus 24459521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21696 rs2304693 TBRG4 9238 7 44921907 NM_030900 NP_112162 A/G P57L plus 24459521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21697 rs2304693 TBRG4 9238 7 44921907 NM_030900 NP_112162 A/G P57L plus 24459521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21698 rs2304693 TBRG4 9238 7 44921907 NM_199122 NP_954573 A/G P57L plus 3251675 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.15 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21699 rs2304693 TBRG4 9238 7 44921907 NM_199122 NP_954573 A/G P57L plus 20314070 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21700 rs2304693 TBRG4 9238 7 44921907 NM_199122 NP_954573 A/G P57L plus 24459521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21701 rs2304693 TBRG4 9238 7 44921907 NM_199122 NP_954573 A/G P57L plus 24459521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21702 rs2304693 TBRG4 9238 7 44921907 NM_199122 NP_954573 A/G P57L plus 24459521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21703 rs2304694 TBRG4 9238 7 44922013 NM_004749 NP_004740 A/C A22S plus 3251676 738 YUSUKE JBIC-ALLELE Japanese (752) 1090 0.15 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21704 rs2304694 TBRG4 9238 7 44922013 NM_004749 NP_004740 A/C A22S plus 24459527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21705 rs2304694 TBRG4 9238 7 44922013 NM_004749 NP_004740 A/C A22S plus 24459527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21706 rs2304694 TBRG4 9238 7 44922013 NM_004749 NP_004740 A/C A22S plus 24459527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21707 rs2304694 TBRG4 9238 7 44922013 NM_030900 NP_112162 A/C A22S plus 3251676 738 YUSUKE JBIC-ALLELE Japanese (752) 1090 0.15 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21708 rs2304694 TBRG4 9238 7 44922013 NM_030900 NP_112162 A/C A22S plus 24459527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21709 rs2304694 TBRG4 9238 7 44922013 NM_030900 NP_112162 A/C A22S plus 24459527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21710 rs2304694 TBRG4 9238 7 44922013 NM_030900 NP_112162 A/C A22S plus 24459527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21711 rs2304694 TBRG4 9238 7 44922013 NM_199122 NP_954573 A/C A22S plus 3251676 738 YUSUKE JBIC-ALLELE Japanese (752) 1090 0.15 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21712 rs2304694 TBRG4 9238 7 44922013 NM_199122 NP_954573 A/C A22S plus 24459527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21713 rs2304694 TBRG4 9238 7 44922013 NM_199122 NP_954573 A/C A22S plus 24459527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21714 rs2304694 TBRG4 9238 7 44922013 NM_199122 NP_954573 A/C A22S plus 24459527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7p14-p13 transforming growth factor beta regulator 4 21715 rs2304705 KYNU 8942 2 143548997 NM_003937 NP_003928 A/G R188Q plus 3251689 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.01 100 HapMap 2q22.3 kynureninase (L-kynurenine hydrolase) 21716 rs2304705 KYNU 8942 2 143548997 NM_003937 NP_003928 A/G R188Q plus 3251689 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2q22.3 kynureninase (L-kynurenine hydrolase) 21717 rs2304707 LTBP2 4053 14 74092024 NM_000428 NP_000419 G/T P319Q plus 3251692 738 YUSUKE JBIC-ALLELE Japanese (752) 1126 0.12 100 "HapMap,freq" 14q24 latent transforming growth factor beta binding protein 2 21718 rs2304707 LTBP2 4053 14 74092024 NM_000428 NP_000419 G/T P319Q plus 3251692 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 100 "HapMap,freq" 14q24 latent transforming growth factor beta binding protein 2 21719 rs2304778 LZIC 84328 1 9929111 NM_032368 NP_115744 C/T G104D plus 3251782 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 by freq 1p36.22 leucine zipper and CTNNBIP1 domain containing 21720 rs2304789 CPNE3 8895 8 87636309 NM_003909 NP_003900 A/G T412M minus 11954602 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 120 "HapMap,doubleHit,freq,cluster" 8q21.2 copine III 21721 rs2304804 ANKRD22 118932 10 90573072 NM_144590 NP_653191 G/T Q148P plus 3251813 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 123 "HapMap,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 22 21722 rs2304804 ANKRD22 118932 10 90573072 NM_144590 NP_653191 G/T Q148P plus 3251813 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 22 21723 rs2304804 ANKRD22 118932 10 90573072 NM_144590 NP_653191 G/T Q148P plus 23572177 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 22 21724 rs2304804 ANKRD22 118932 10 90573072 NM_144590 NP_653191 G/T Q148P plus 23572177 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 22 21725 rs2304804 ANKRD22 118932 10 90573072 NM_144590 NP_653191 G/T Q148P plus 23572177 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 22 21726 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21727 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21728 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21729 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 903 AFFY Asian 10 1 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21730 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 904 AFFY CEPH 12 1 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21731 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 3251835 905 AFFY PDpanel 44 1 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21732 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 28458984 549 KYUGEN CP CEPH (78) 156 0.1 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21733 rs2304821 PTPRB 5787 12 69249886 NM_002837 NP_002828 A/G T939M plus 28458984 1335 KYUGEN JPK2 Japanese (100) 200 0.04 123 "by cluster,freq" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 21734 rs2304824 BG1 23205 15 76253182 NM_015162 NP_055977 A/G M633V minus 3251839 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.3 123 "HapMap,doubleHit,freq,cluster" 15q23-q24 lipidosin 21735 rs2304824 BG1 23205 15 76253182 NM_015162 NP_055977 A/G M633V minus 16152534 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 15q23-q24 lipidosin 21736 rs2304824 BG1 23205 15 76253182 NM_015162 NP_055977 A/G M633V minus 24677665 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 15q23-q24 lipidosin 21737 rs2304824 BG1 23205 15 76253182 NM_015162 NP_055977 A/G M633V minus 24677665 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 15q23-q24 lipidosin 21738 rs2304824 BG1 23205 15 76253182 NM_015162 NP_055977 A/G M633V minus 24677665 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 15q23-q24 lipidosin 21739 rs2304877 ANK1 286 8 41685595 NM_000037 NP_000028 A/G R619H minus 23476352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21740 rs2304877 ANK1 286 8 41685595 NM_000037 NP_000028 A/G R619H minus 23476352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21741 rs2304877 ANK1 286 8 41685595 NM_000037 NP_000028 A/G R619H minus 23476352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21742 rs2304877 ANK1 286 8 41685595 NM_020475 NP_065208 A/G R619H minus 23476352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21743 rs2304877 ANK1 286 8 41685595 NM_020475 NP_065208 A/G R619H minus 23476352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21744 rs2304877 ANK1 286 8 41685595 NM_020475 NP_065208 A/G R619H minus 23476352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21745 rs2304877 ANK1 286 8 41685595 NM_020476 NP_065209 A/G R619H minus 23476352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21746 rs2304877 ANK1 286 8 41685595 NM_020476 NP_065209 A/G R619H minus 23476352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21747 rs2304877 ANK1 286 8 41685595 NM_020476 NP_065209 A/G R619H minus 23476352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21748 rs2304877 ANK1 286 8 41685595 NM_020477 NP_065210 A/G R619H minus 23476352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21749 rs2304877 ANK1 286 8 41685595 NM_020477 NP_065210 A/G R619H minus 23476352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21750 rs2304877 ANK1 286 8 41685595 NM_020477 NP_065210 A/G R619H minus 23476352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 8p11.1 "ankyrin 1, erythrocytic" 21751 rs2304933 MS4A6E 245802 11 59859083 NM_139249 NP_640342 A/C V47F minus 3251979 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.33 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21752 rs2304933 MS4A6E 245802 11 59859083 NM_139249 NP_640342 A/C V47F minus 3251979 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21753 rs2304933 MS4A6E 245802 11 59859083 NM_139249 NP_640342 A/C V47F minus 24102692 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21754 rs2304933 MS4A6E 245802 11 59859083 NM_139249 NP_640342 A/C V47F minus 24102692 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21755 rs2304933 MS4A6E 245802 11 59859083 NM_139249 NP_640342 A/C V47F minus 24102692 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21756 rs2304934 MS4A6E 245802 11 59858972 NM_139249 NP_640342 C/T T10A minus 24102685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21757 rs2304934 MS4A6E 245802 11 59858972 NM_139249 NP_640342 C/T T10A minus 24102685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21758 rs2304934 MS4A6E 245802 11 59858972 NM_139249 NP_640342 C/T T10A minus 24102685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21759 rs2304935 MS4A6E 245802 11 59858960 NM_139249 NP_640342 C/T I6V minus 24102679 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21760 rs2304935 MS4A6E 245802 11 59858960 NM_139249 NP_640342 C/T I6V minus 24102679 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21761 rs2304935 MS4A6E 245802 11 59858960 NM_139249 NP_640342 C/T I6V minus 24102679 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q12.2 "membrane-spanning 4-domains, subfamily A, member 6E" 21762 rs2304942 CUEDC1 404093 17 53305194 NM_017949 NP_060419 A/G P205S plus 3251989 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 100 HapMap 17q23.2 CUE domain containing 1 21763 rs2304942 CUEDC1 404093 17 53305194 NM_017949 NP_060419 A/G P205S plus 3251989 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1468 0 100 HapMap 17q23.2 CUE domain containing 1 21764 rs2304967 SLFN5 342615 17 30829293 XM_496206 XP_496206 C/G A402G minus 3252020 738 YUSUKE JBIC-ALLELE Japanese (752) 1262 0.2 123 "by doubleHit,freq,cluster" 17q21.1 schlafen 5 21765 rs2304967 SLFN5 342615 17 30829293 XM_496206 XP_496206 C/G A402G minus 23664521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 17q21.1 schlafen 5 21766 rs2304967 SLFN5 342615 17 30829293 XM_496206 XP_496206 C/G A402G minus 23664521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 17q21.1 schlafen 5 21767 rs2304967 SLFN5 342615 17 30829293 XM_496206 XP_496206 C/G A402G minus 23664521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 17q21.1 schlafen 5 21768 rs2304968 SLFN5 342615 17 30829263 XM_496206 XP_496206 A/G Y412C minus 3252021 738 YUSUKE JBIC-ALLELE Japanese (752) 1284 0.23 123 "HapMap,doubleHit,freq,cluster" 17q21.1 schlafen 5 21769 rs2304968 SLFN5 342615 17 30829263 XM_496206 XP_496206 A/G Y412C minus 16730761 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,freq,cluster" 17q21.1 schlafen 5 21770 rs2304968 SLFN5 342615 17 30829263 XM_496206 XP_496206 A/G Y412C minus 24614812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q21.1 schlafen 5 21771 rs2304968 SLFN5 342615 17 30829263 XM_496206 XP_496206 A/G Y412C minus 24614812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 17q21.1 schlafen 5 21772 rs2304968 SLFN5 342615 17 30829263 XM_496206 XP_496206 A/G Y412C minus 24614812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 17q21.1 schlafen 5 21773 rs2304974 PSMB6 5694 17 4647951 NM_002798 NP_002789 C/G P107A plus 3252028 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 100 by freq 17p13 "proteasome (prosome, macropain) subunit, beta type, 6" 21774 rs2305027 COLEC12 81035 18 324742 NM_030781 NP_110408 A/G G606S minus 24458838 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21775 rs2305027 COLEC12 81035 18 324742 NM_030781 NP_110408 A/G G606S minus 24458838 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21776 rs2305027 COLEC12 81035 18 324742 NM_030781 NP_110408 A/G G606S minus 24458838 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21777 rs2305027 COLEC12 81035 18 324742 NM_130386 NP_569057 A/G G606S minus 24458838 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21778 rs2305027 COLEC12 81035 18 324742 NM_130386 NP_569057 A/G G606S minus 24458838 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21779 rs2305027 COLEC12 81035 18 324742 NM_130386 NP_569057 A/G G606S minus 24458838 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 21780 rs2305030 LTK 4058 15 39592529 NM_002344 NP_002335 C/T R42Q plus 3252107 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.25 120 "by cluster,freq" 15q15.1-q21.1 leukocyte tyrosine kinase 21781 rs2305030 LTK 4058 15 39592529 NM_206961 NP_996844 C/T R42Q plus 3252107 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.25 120 "by cluster,freq" 15q15.1-q21.1 leukocyte tyrosine kinase 21782 rs2305053 STK11IP 114790 2 220302031 NM_052902 NP_443134 C/T R780C plus 3252139 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 100 by freq 2q36.1 serine/threonine kinase 11 interacting protein 21783 rs2305089 T 6862 6 166549681 NM_003181 NP_003172 C/T G177D plus 3252182 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.33 120 "by doubleHit,freq,cluster" 6q27 "T, brachyury homolog (mouse)" 21784 rs2305160 NPAS2 4862 2 101049822 NM_002518 NP_002509 C/T T394A minus 3252283 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.17 123 "by doubleHit,freq,cluster" 2q11.2 neuronal PAS domain protein 2 21785 rs2305165 R3HDM 23518 2 136243306 NM_015361 NP_056176 G/T Q632P minus 3252289 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.16 123 "HapMap,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 21786 rs2305165 R3HDM 23518 2 136243306 NM_015361 NP_056176 G/T Q632P minus 3252289 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 21787 rs2305165 R3HDM 23518 2 136243306 NM_015361 NP_056176 G/T Q632P minus 23874507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.1 123 "HapMap,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 21788 rs2305165 R3HDM 23518 2 136243306 NM_015361 NP_056176 G/T Q632P minus 23874507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "HapMap,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 21789 rs2305165 R3HDM 23518 2 136243306 NM_015361 NP_056176 G/T Q632P minus 23874507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 2q21.3 R3H domain (binds single-stranded nucleic acids) containing 21790 rs2305205 PNLIPRP1 5407 10 118347666 NM_006229 NP_006220 A/G A271V minus 3252336 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.07 100 by freq 10q26.12 pancreatic lipase-related protein 1 21791 rs2305246 GBE1 2632 3 81780820 NM_000158 NP_000149 C/T R190G plus 3252387 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.48 123 "by submitter,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 21792 rs2305246 GBE1 2632 3 81780820 NM_000158 NP_000149 C/T R190G plus 16338520 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 16 0.38 123 "by submitter,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 21793 rs2305246 GBE1 2632 3 81780820 NM_000158 NP_000149 C/T R190G plus 23926308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by submitter,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 21794 rs2305246 GBE1 2632 3 81780820 NM_000158 NP_000149 C/T R190G plus 23926308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 21795 rs2305246 GBE1 2632 3 81780820 NM_000158 NP_000149 C/T R190G plus 23926308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by submitter,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 21796 rs2305253 OCA2 4948 15 25937223 NM_000275 NP_000266 C/G P241R minus 3252398 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 123 HapMap 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 21797 rs2305253 OCA2 4948 15 25937223 NM_000275 NP_000266 C/G P241R minus 3252398 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 21798 rs2305253 OCA2 4948 15 25937223 NM_000275 NP_000266 C/G P241R minus 24189307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 21799 rs2305253 OCA2 4948 15 25937223 NM_000275 NP_000266 C/G P241R minus 24189307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 HapMap 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 21800 rs2305253 OCA2 4948 15 25937223 NM_000275 NP_000266 C/G P241R minus 24189307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 15q11.2-q12 "oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 21801 rs2305257 cig5 91543 2 6968683 NM_080657 NP_542388 A/G V52I plus 3252403 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 100 by freq 2p25.2 viperin 21802 rs2305276 CNTN2 6900 1 201767378 NM_005076 NP_005067 A/G R657W minus 3252427 738 YUSUKE JBIC-ALLELE Japanese (752) 894 0.01 100 by freq 1q32.1 contactin 2 (axonal) 21803 rs2305296 MKRN2 23609 3 12585453 NM_014160 NP_054879 A/G I36V plus 3252455 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 100 HapMap 3p25 "makorin, ring finger protein, 2" 21804 rs2305296 MKRN2 23609 3 12585453 NM_014160 NP_054879 A/G I36V plus 3252455 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 3p25 "makorin, ring finger protein, 2" 21805 rs2305370 NAPG 8774 18 10540121 NM_003826 NP_003817 C/G K281N minus 3252564 638 TSC-CSHL TSC_42_AA TSC African American (42) 84 1 100 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 21806 rs2305370 NAPG 8774 18 10540121 NM_003826 NP_003817 C/G K281N minus 3252564 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 1 100 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 21807 rs2305370 NAPG 8774 18 10540121 NM_003826 NP_003817 C/G K281N minus 3252564 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 100 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 21808 rs2305370 NAPG 8774 18 10540121 NM_003826 NP_003817 C/G K281N minus 3252564 738 YUSUKE JBIC-ALLELE Japanese (752) 1286 0.01 100 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 21809 rs2305376 HOOK2 29911 19 12747236 NM_013312 NP_037444 C/T G10R plus 3252573 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 100 by freq 19p13.2 hook homolog 2 (Drosophila) 21810 rs2305397 TIP120B 23066 3 12832493 XM_371617 XP_371617 A/G P383L minus 3252600 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.17 123 "by doubleHit,submitter,freq,cluster" 3p25.2 TBP-interacting protein 21811 rs2305397 TIP120B 23066 3 12832493 XM_371617 XP_371617 A/G P383L minus 24304631 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 3p25.2 TBP-interacting protein 21812 rs2305397 TIP120B 23066 3 12832493 XM_371617 XP_371617 A/G P383L minus 24304631 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,submitter,freq,cluster" 3p25.2 TBP-interacting protein 21813 rs2305397 TIP120B 23066 3 12832493 XM_371617 XP_371617 A/G P383L minus 24304631 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "by doubleHit,submitter,freq,cluster" 3p25.2 TBP-interacting protein 21814 rs2305398 TIP120B 23066 3 12831856 XM_371617 XP_371617 C/T Q315R minus 3252601 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.29 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 21815 rs2305398 TIP120B 23066 3 12831856 XM_371617 XP_371617 C/T Q315R minus 24304622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 21816 rs2305398 TIP120B 23066 3 12831856 XM_371617 XP_371617 C/T Q315R minus 24304622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 21817 rs2305398 TIP120B 23066 3 12831856 XM_371617 XP_371617 C/T Q315R minus 24304622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 21818 rs2305479 GSDML 55876 17 35315743 NM_018530 NP_061000 A/G G282R minus 3252703 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.26 123 "by doubleHit,freq,cluster" 17q21.2 gasdermin-like 21819 rs2305479 GSDML 55876 17 35315743 NM_018530 NP_061000 A/G G282R minus 24578300 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17q21.2 gasdermin-like 21820 rs2305479 GSDML 55876 17 35315743 NM_018530 NP_061000 A/G G282R minus 24578300 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 17q21.2 gasdermin-like 21821 rs2305479 GSDML 55876 17 35315743 NM_018530 NP_061000 A/G G282R minus 24578300 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 17q21.2 gasdermin-like 21822 rs2305480 GSDML 55876 17 35315722 NM_018530 NP_061000 C/T P289S minus 3252704 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.27 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin-like 21823 rs2305480 GSDML 55876 17 35315722 NM_018530 NP_061000 C/T P289S minus 3252704 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.46 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin-like 21824 rs2305480 GSDML 55876 17 35315722 NM_018530 NP_061000 C/T P289S minus 24578297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin-like 21825 rs2305480 GSDML 55876 17 35315722 NM_018530 NP_061000 C/T P289S minus 24578297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin-like 21826 rs2305480 GSDML 55876 17 35315722 NM_018530 NP_061000 C/T P289S minus 24578297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin-like 21827 rs2305535 DPP3 10072 11 66028813 NM_005700 NP_005691 C/T R678H minus 3252791 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21828 rs2305535 DPP3 10072 11 66028813 NM_005700 NP_005691 C/T R678H minus 3252791 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.25 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21829 rs2305535 DPP3 10072 11 66028813 NM_005700 NP_005691 C/T R678H minus 24562495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21830 rs2305535 DPP3 10072 11 66028813 NM_005700 NP_005691 C/T R678H minus 24562495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21831 rs2305535 DPP3 10072 11 66028813 NM_005700 NP_005691 C/T R678H minus 24562495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21832 rs2305535 DPP3 10072 11 66028813 NM_130443 NP_569710 C/T R258H minus 3252791 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.26 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21833 rs2305535 DPP3 10072 11 66028813 NM_130443 NP_569710 C/T R258H minus 3252791 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.25 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21834 rs2305535 DPP3 10072 11 66028813 NM_130443 NP_569710 C/T R258H minus 24562495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21835 rs2305535 DPP3 10072 11 66028813 NM_130443 NP_569710 C/T R258H minus 24562495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21836 rs2305535 DPP3 10072 11 66028813 NM_130443 NP_569710 C/T R258H minus 24562495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq" 11q12-q13.1 dipeptidylpeptidase 3 21837 rs2305556 KRT15 3866 17 36925250 NM_002275 NP_002266 C/T K416R plus 3252827 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.03 123 by freq 17q21.2 keratin 15 21838 rs2305556 KRT15 3866 17 36925250 NM_002275 NP_002266 C/T K416R plus 24562722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 17q21.2 keratin 15 21839 rs2305556 KRT15 3866 17 36925250 NM_002275 NP_002266 C/T K416R plus 24562722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 17q21.2 keratin 15 21840 rs2305556 KRT15 3866 17 36925250 NM_002275 NP_002266 C/T K416R plus 24562722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 17q21.2 keratin 15 21841 rs2305606 COL14A1 7373 8 121329117 XM_044622 XP_044622 C/T P828L plus 3252883 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 100 HapMap 8q23 "collagen, type XIV, alpha 1 (undulin)" 21842 rs2305658 ZNF500 26048 16 4742875 XM_085507 XP_085507 A/G R316W plus 3252946 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.02 100 HapMap 16p13.3 zinc finger protein 500 21843 rs2305658 ZNF500 26048 16 4742875 XM_085507 XP_085507 A/G R316W plus 3252946 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 16p13.3 zinc finger protein 500 21844 rs2305710 SCG3 29106 15 49762900 NM_013243 NP_037375 A/G S125N plus 24182325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by submitter,freq,cluster" 15q21 secretogranin III 21845 rs2305710 SCG3 29106 15 49762900 NM_013243 NP_037375 A/G S125N plus 24182325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 15q21 secretogranin III 21846 rs2305710 SCG3 29106 15 49762900 NM_013243 NP_037375 A/G S125N plus 24182325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq,cluster" 15q21 secretogranin III 21847 rs2305734 RARS 5917 5 167865736 NM_002887 NP_002878 A/T F397Y plus 3253037 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.11 123 by freq 5q35.1 arginyl-tRNA synthetase 21848 rs2305734 RARS 5917 5 167865736 NM_002887 NP_002878 A/T F397Y plus 24671425 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 5q35.1 arginyl-tRNA synthetase 21849 rs2305734 RARS 5917 5 167865736 NM_002887 NP_002878 A/T F397Y plus 24671425 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 5q35.1 arginyl-tRNA synthetase 21850 rs2305734 RARS 5917 5 167865736 NM_002887 NP_002878 A/T F397Y plus 24671425 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q35.1 arginyl-tRNA synthetase 21851 rs2305748 SCN1B 6324 19 40221978 NM_001037 NP_001028 C/T T189M plus 3253063 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 19q13.1 "sodium channel, voltage-gated, type I, beta" 21852 rs2305748 SCN1B 6324 19 40221978 NM_001037 NP_001028 C/T T189M plus 28461950 1349 PHARMGKB_PAT PA130597731 Asian 752 0 123 "HapMap,cluster" 19q13.1 "sodium channel, voltage-gated, type I, beta" 21853 rs2305770 SIGLEC8 27181 19 56653357 NM_014442 NP_055257 C/T E33K plus 3253091 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 100 HapMap 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 21854 rs2305770 SIGLEC8 27181 19 56653357 NM_014442 NP_055257 C/T E33K plus 3253091 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 21855 rs2305773 SIGLEC6 946 19 56726484 NM_001245 NP_001236 C/G L57V plus 3253096 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 19q13.3 sialic acid binding Ig-like lectin 6 21856 rs2305773 SIGLEC6 946 19 56726484 NM_198845 NP_942142 C/G L57V plus 3253096 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 19q13.3 sialic acid binding Ig-like lectin 6 21857 rs2305773 SIGLEC6 946 19 56726484 NM_198846 NP_942143 C/G L57V plus 3253096 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 100 by freq 19q13.3 sialic acid binding Ig-like lectin 6 21858 rs2305780 RFX1 5989 19 13944761 NM_002918 NP_002909 A/G T370A minus 3253105 738 YUSUKE JBIC-ALLELE Japanese (752) 1092 0.38 120 "by cluster,freq" 19p13.1 "regulatory factor X, 1 (influences HLA class II expression)" 21859 rs2305793 PPAN 56342 19 10082414 NM_020230 NP_064615 G/T G358V plus 3253120 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0 100 by freq 19p13 peter pan homolog (Drosophila) 21860 rs2305799 ACP5 54 19 11548351 NM_001611 NP_001602 C/T V148M plus 3253130 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.08 100 "HapMap,freq" 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 21861 rs2305799 ACP5 54 19 11548351 NM_001611 NP_001602 C/T V148M plus 3253130 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 100 "HapMap,freq" 19p13.3-p13.2 "acid phosphatase 5, tartrate resistant" 21862 rs2305820 ITGB6 3694 2 160819803 NM_000888 NP_000879 G/T P437T plus 3253155 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 100 HapMap 2q24.3 "integrin, beta 6" 21863 rs2305820 ITGB6 3694 2 160819803 NM_000888 NP_000879 G/T P437T plus 3253155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2q24.3 "integrin, beta 6" 21864 rs2305913 FBF1 85302 17 71434536 XM_371079 XP_371079 A/G R151G minus 14281454 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 119 "HapMap,doubleHit,freq,cluster" 17q25.3 Fas (TNFRSF6) binding factor 1 21865 rs2305935 BRRN1 23397 2 96452121 NM_015341 NP_056156 C/T V539A plus 3253308 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.31 100 "HapMap,freq" 2q11.2 barren homolog (Drosophila) 21866 rs2305935 BRRN1 23397 2 96452121 NM_015341 NP_056156 C/T V539A plus 3253308 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 100 "HapMap,freq" 2q11.2 barren homolog (Drosophila) 21867 rs2305948 KDR 3791 4 55820486 NM_002253 NP_002244 C/T V297I plus 3253325 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.11 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 21868 rs2305948 KDR 3791 4 55820486 NM_002253 NP_002244 C/T V297I plus 23368144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 21869 rs2305948 KDR 3791 4 55820486 NM_002253 NP_002244 C/T V297I plus 23368144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 21870 rs2305948 KDR 3791 4 55820486 NM_002253 NP_002244 C/T V297I plus 23368144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by submitter,freq,cluster" 4q11-q12 kinase insert domain receptor (a type III receptor tyrosine kinase) 21871 rs2305984 NUP160 23279 11 47826431 XM_113678 XP_113678 C/T A158T plus 3253372 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 "HapMap,submitter,freq" 11p11.12 nucleoporin 160kDa 21872 rs2305984 NUP160 23279 11 47826431 XM_113678 XP_113678 C/T A158T plus 3253372 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,submitter,freq" 11p11.12 nucleoporin 160kDa 21873 rs2305984 NUP160 23279 11 47826431 XM_113678 XP_113678 C/T A158T plus 24207894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,submitter,freq" 11p11.12 nucleoporin 160kDa 21874 rs2305984 NUP160 23279 11 47826431 XM_113678 XP_113678 C/T A158T plus 24207894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq" 11p11.12 nucleoporin 160kDa 21875 rs2305984 NUP160 23279 11 47826431 XM_113678 XP_113678 C/T A158T plus 24207894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq" 11p11.12 nucleoporin 160kDa 21876 rs2305993 SLIT3 6586 5 168055976 NM_003062 NP_003053 A/G E994G minus 3253383 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 123 by freq 5q35 slit homolog 3 (Drosophila) 21877 rs2305993 SLIT3 6586 5 168055976 NM_003062 NP_003053 A/G E994G minus 24185985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 5q35 slit homolog 3 (Drosophila) 21878 rs2305993 SLIT3 6586 5 168055976 NM_003062 NP_003053 A/G E994G minus 24185985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q35 slit homolog 3 (Drosophila) 21879 rs2305993 SLIT3 6586 5 168055976 NM_003062 NP_003053 A/G E994G minus 24185985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q35 slit homolog 3 (Drosophila) 21880 rs2306022 ITGA11 22801 15 66415217 NM_012211 NP_036343 A/G V433M minus 24427582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 15q22.3-q23 "integrin, alpha 11" 21881 rs2306022 ITGA11 22801 15 66415217 NM_012211 NP_036343 A/G V433M minus 24427582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 15q22.3-q23 "integrin, alpha 11" 21882 rs2306022 ITGA11 22801 15 66415217 NM_012211 NP_036343 A/G V433M minus 24427582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 15q22.3-q23 "integrin, alpha 11" 21883 rs2306024 ITGA11 22801 15 66415103 NM_012211 NP_036343 A/C M471L minus 3253427 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.05 123 "by cluster,freq" 15q22.3-q23 "integrin, alpha 11" 21884 rs2306024 ITGA11 22801 15 66415103 NM_012211 NP_036343 A/C M471L minus 23411427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 15q22.3-q23 "integrin, alpha 11" 21885 rs2306024 ITGA11 22801 15 66415103 NM_012211 NP_036343 A/C M471L minus 23411427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by cluster,freq" 15q22.3-q23 "integrin, alpha 11" 21886 rs2306024 ITGA11 22801 15 66415103 NM_012211 NP_036343 A/C M471L minus 23411427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by cluster,freq" 15q22.3-q23 "integrin, alpha 11" 21887 rs2306029 LRP4 4038 11 46849684 XM_035037 XP_035037 C/T S1524G plus 3253433 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.26 123 "HapMap,doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21888 rs2306029 LRP4 4038 11 46849684 XM_035037 XP_035037 C/T S1524G plus 16000644 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.37 123 "HapMap,doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21889 rs2306029 LRP4 4038 11 46849684 XM_035037 XP_035037 C/T S1524G plus 24697440 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21890 rs2306029 LRP4 4038 11 46849684 XM_035037 XP_035037 C/T S1524G plus 24697440 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21891 rs2306029 LRP4 4038 11 46849684 XM_035037 XP_035037 C/T S1524G plus 24697440 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21892 rs2306033 LRP4 4038 11 46854022 XM_035037 XP_035037 A/G A1173V plus 3253437 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by submitter,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21893 rs2306033 LRP4 4038 11 46854022 XM_035037 XP_035037 A/G A1173V plus 24207556 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21894 rs2306033 LRP4 4038 11 46854022 XM_035037 XP_035037 A/G A1173V plus 24207556 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21895 rs2306033 LRP4 4038 11 46854022 XM_035037 XP_035037 A/G A1173V plus 24207556 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by submitter,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 21896 rs2306066 MUCDHL 53841 11 609695 NM_017717 NP_060187 A/G D389N minus 3253484 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p15.5 mucin and cadherin-like 21897 rs2306066 MUCDHL 53841 11 609695 NM_017717 NP_060187 A/G D389N minus 3253484 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 11p15.5 mucin and cadherin-like 21898 rs2306066 MUCDHL 53841 11 609695 NM_021924 NP_068743 A/G D389N minus 3253484 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p15.5 mucin and cadherin-like 21899 rs2306066 MUCDHL 53841 11 609695 NM_021924 NP_068743 A/G D389N minus 3253484 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 11p15.5 mucin and cadherin-like 21900 rs2306066 MUCDHL 53841 11 609695 NM_031264 NP_112554 A/G D389N minus 3253484 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p15.5 mucin and cadherin-like 21901 rs2306066 MUCDHL 53841 11 609695 NM_031264 NP_112554 A/G D389N minus 3253484 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 100 HapMap 11p15.5 mucin and cadherin-like 21902 rs2306120 ACBD3 64746 1 222659233 NM_022735 NP_073572 G/T E187D plus 3253553 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.41 123 "by doubleHit,freq,cluster" 1q42.13 acyl-Coenzyme A binding domain containing 3 21903 rs2306120 ACBD3 64746 1 222659233 NM_022735 NP_073572 G/T E187D plus 23858122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q42.13 acyl-Coenzyme A binding domain containing 3 21904 rs2306120 ACBD3 64746 1 222659233 NM_022735 NP_073572 G/T E187D plus 23858122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 1q42.13 acyl-Coenzyme A binding domain containing 3 21905 rs2306120 ACBD3 64746 1 222659233 NM_022735 NP_073572 G/T E187D plus 23858122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 1q42.13 acyl-Coenzyme A binding domain containing 3 21906 rs2306131 POP1 10940 8 99221498 NM_015029 NP_055844 G/T E460A minus 3253565 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 100 by freq 8q22.1 "processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)" 21907 rs2306134 PPP4R1 9989 18 9552042 NM_005134 NP_005125 C/T S576N plus 3253568 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.47 123 "by doubleHit,submitter,freq,cluster" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 21908 rs2306134 PPP4R1 9989 18 9552042 NM_005134 NP_005125 C/T S576N plus 24008481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 21909 rs2306134 PPP4R1 9989 18 9552042 NM_005134 NP_005125 C/T S576N plus 24008481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,submitter,freq,cluster" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 21910 rs2306134 PPP4R1 9989 18 9552042 NM_005134 NP_005125 C/T S576N plus 24008481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 18p11.22 "protein phosphatase 4, regulatory subunit 1" 21911 rs2306168 SLCO2B1 11309 11 74585230 NM_007256 NP_009187 C/T S486F plus 3253612 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.31 123 "HapMap,freq,cluster" 11q13 "solute carrier organic anion transporter family, member 2B1" 21912 rs2306168 SLCO2B1 11309 11 74585230 NM_007256 NP_009187 C/T S486F plus 3253612 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,freq,cluster" 11q13 "solute carrier organic anion transporter family, member 2B1" 21913 rs2306168 SLCO2B1 11309 11 74585230 NM_007256 NP_009187 C/T S486F plus 23681274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 11q13 "solute carrier organic anion transporter family, member 2B1" 21914 rs2306168 SLCO2B1 11309 11 74585230 NM_007256 NP_009187 C/T S486F plus 23681274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "HapMap,freq,cluster" 11q13 "solute carrier organic anion transporter family, member 2B1" 21915 rs2306168 SLCO2B1 11309 11 74585230 NM_007256 NP_009187 C/T S486F plus 23681274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "HapMap,freq,cluster" 11q13 "solute carrier organic anion transporter family, member 2B1" 21916 rs2306180 GYS2 2998 12 21604669 NM_021957 NP_068776 C/T M363V plus 3253624 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.19 123 "HapMap,doubleHit,freq,cluster" 12p12.2 glycogen synthase 2 (liver) 21917 rs2306180 GYS2 2998 12 21604669 NM_021957 NP_068776 C/T M363V plus 11038709 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.18 123 "HapMap,doubleHit,freq,cluster" 12p12.2 glycogen synthase 2 (liver) 21918 rs2306180 GYS2 2998 12 21604669 NM_021957 NP_068776 C/T M363V plus 23424787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 12p12.2 glycogen synthase 2 (liver) 21919 rs2306180 GYS2 2998 12 21604669 NM_021957 NP_068776 C/T M363V plus 23424787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 12p12.2 glycogen synthase 2 (liver) 21920 rs2306180 GYS2 2998 12 21604669 NM_021957 NP_068776 C/T M363V plus 23424787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 12p12.2 glycogen synthase 2 (liver) 21921 rs2306182 KLRK1 22914 12 10422001 NM_007360 NP_031386 A/G N177S minus 3253627 738 YUSUKE JBIC-ALLELE Japanese (752) 1278 0.02 100 HapMap 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 21922 rs2306182 KLRK1 22914 12 10422001 NM_007360 NP_031386 A/G N177S minus 3253627 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12p13.2-p12.3 "killer cell lectin-like receptor subfamily K, member 1" 21923 rs2306211 POLQ 10721 3 122634474 NM_006596 NP_006587 A/G A2682V plus 3253683 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.08 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21924 rs2306211 POLQ 10721 3 122634474 NM_006596 NP_006587 A/G A2682V plus 4479804 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21925 rs2306211 POLQ 10721 3 122634474 NM_006596 NP_006587 A/G A2682V plus 23934030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21926 rs2306211 POLQ 10721 3 122634474 NM_006596 NP_006587 A/G A2682V plus 23934030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21927 rs2306211 POLQ 10721 3 122634474 NM_006596 NP_006587 A/G A2682V plus 23934030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21928 rs2306211 POLQ 10721 3 122634474 NM_199420 NP_955452 A/G A2549V plus 3253683 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.08 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21929 rs2306211 POLQ 10721 3 122634474 NM_199420 NP_955452 A/G A2549V plus 4479804 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21930 rs2306211 POLQ 10721 3 122634474 NM_199420 NP_955452 A/G A2549V plus 23934030 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21931 rs2306211 POLQ 10721 3 122634474 NM_199420 NP_955452 A/G A2549V plus 23934030 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21932 rs2306211 POLQ 10721 3 122634474 NM_199420 NP_955452 A/G A2549V plus 23934030 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 21933 rs2306235 CKIP-1 51177 1 146936205 NM_016274 NP_057358 C/G P21A minus 3253711 738 YUSUKE JBIC-ALLELE Japanese (752) 1312 0.07 100 by freq 1q21.3 CK2 interacting protein 1; HQ0024c protein 21934 rs2306236 ABI1 10006 10 27088083 NM_005470 NP_005461 C/G G331A plus 3253715 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.02 100 by freq 10p11.2 abl-interactor 1 21935 rs2306242 GAK 2580 4 833550 NM_005255 NP_005246 A/G K1265R minus 3253726 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.14 100 by freq 4p16 cyclin G associated kinase 21936 rs2306259 DDX4 54514 5 55111597 NM_019039 NP_061912 C/T G148D minus 3253747 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5p15.2-p13.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 21937 rs2306259 DDX4 54514 5 55111597 NM_024415 NP_077726 C/T G148D minus 3253747 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 5p15.2-p13.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 21938 rs2306265 GRID1 2894 10 87474362 XM_043613 XP_043613 C/T V529I plus 3253753 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "by cluster,freq" 10q22 "glutamate receptor, ionotropic, delta 1" 21939 rs2306265 GRID1 2894 10 87474362 XM_043613 XP_043613 C/T V529I plus 24076759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 10q22 "glutamate receptor, ionotropic, delta 1" 21940 rs2306265 GRID1 2894 10 87474362 XM_043613 XP_043613 C/T V529I plus 24076759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q22 "glutamate receptor, ionotropic, delta 1" 21941 rs2306265 GRID1 2894 10 87474362 XM_043613 XP_043613 C/T V529I plus 24076759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 10q22 "glutamate receptor, ionotropic, delta 1" 21942 rs2306277 FMN 342184 15 31144554 XM_375185 XP_375185 C/T L463P minus 3253773 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.24 123 "HapMap,freq,cluster" 15q13.2 formin (limb deformity) 21943 rs2306277 FMN 342184 15 31144554 XM_375185 XP_375185 C/T L463P minus 10765994 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,freq,cluster" 15q13.2 formin (limb deformity) 21944 rs2306277 FMN 342184 15 31144554 XM_375185 XP_375185 C/T L463P minus 24612607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,freq,cluster" 15q13.2 formin (limb deformity) 21945 rs2306277 FMN 342184 15 31144554 XM_375185 XP_375185 C/T L463P minus 24612607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,freq,cluster" 15q13.2 formin (limb deformity) 21946 rs2306277 FMN 342184 15 31144554 XM_375185 XP_375185 C/T L463P minus 24612607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 15q13.2 formin (limb deformity) 21947 rs2306283 SLCO1B1 10599 12 21221005 NM_006446 NP_006437 C/T N130D minus 13610057 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12p "solute carrier organic anion transporter family, member 1B1" 21948 rs2306283 SLCO1B1 10599 12 21221005 NM_006446 NP_006437 C/T N130D minus 24436875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 12p "solute carrier organic anion transporter family, member 1B1" 21949 rs2306283 SLCO1B1 10599 12 21221005 NM_006446 NP_006437 C/T N130D minus 24436875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12p "solute carrier organic anion transporter family, member 1B1" 21950 rs2306283 SLCO1B1 10599 12 21221005 NM_006446 NP_006437 C/T N130D minus 24436875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 12p "solute carrier organic anion transporter family, member 1B1" 21951 rs2306322 SPOCK2 9806 10 73492861 NM_014767 NP_055582 C/T G353S plus 3253823 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 100 by freq 10pter-q25.3 "sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2" 21952 rs2306331 AP4E1 23431 15 49004653 NM_007347 NP_031373 C/T C163R plus 3253836 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.43 123 "HapMap,freq" 15q15.3 "adaptor-related protein complex 4, epsilon 1 subunit" 21953 rs2306331 AP4E1 23431 15 49004653 NM_007347 NP_031373 C/T C163R plus 3253836 885 TSC-CSHL HapMap-CEPH-30-trios 59 0.5 123 "HapMap,freq" 15q15.3 "adaptor-related protein complex 4, epsilon 1 subunit" 21954 rs2306331 AP4E1 23431 15 49004653 NM_007347 NP_031373 C/T C163R plus 24181627 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,freq" 15q15.3 "adaptor-related protein complex 4, epsilon 1 subunit" 21955 rs2306331 AP4E1 23431 15 49004653 NM_007347 NP_031373 C/T C163R plus 24181627 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,freq" 15q15.3 "adaptor-related protein complex 4, epsilon 1 subunit" 21956 rs2306331 AP4E1 23431 15 49004653 NM_007347 NP_031373 C/T C163R plus 24181627 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,freq" 15q15.3 "adaptor-related protein complex 4, epsilon 1 subunit" 21957 rs2306384 NFKBIL2 4796 8 145636215 NM_013432 NP_038460 A/G G334S minus 3253909 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.43 123 "HapMap,doubleHit,freq,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 21958 rs2306384 NFKBIL2 4796 8 145636215 NM_013432 NP_038460 A/G G334S minus 10485854 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 21959 rs2306384 NFKBIL2 4796 8 145636215 NM_013432 NP_038460 A/G G334S minus 23966102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 21960 rs2306384 NFKBIL2 4796 8 145636215 NM_013432 NP_038460 A/G G334S minus 23966102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,doubleHit,freq,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 21961 rs2306384 NFKBIL2 4796 8 145636215 NM_013432 NP_038460 A/G G334S minus 23966102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 21962 rs2306392 MDM1 56890 12 66993554 NM_017440 NP_059136 A/G P552L plus 3253920 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.19 123 "HapMap,doubleHit,freq" 12q14.3 nuclear protein double minute 1 21963 rs2306392 MDM1 56890 12 66993554 NM_017440 NP_059136 A/G P552L plus 3253920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,freq" 12q14.3 nuclear protein double minute 1 21964 rs2306392 MDM1 56890 12 66993554 NM_017440 NP_059136 A/G P552L plus 24440864 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq" 12q14.3 nuclear protein double minute 1 21965 rs2306392 MDM1 56890 12 66993554 NM_017440 NP_059136 A/G P552L plus 24440864 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq" 12q14.3 nuclear protein double minute 1 21966 rs2306392 MDM1 56890 12 66993554 NM_017440 NP_059136 A/G P552L plus 24440864 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq" 12q14.3 nuclear protein double minute 1 21967 rs2306393 MDM1 56890 12 66995028 NM_017440 NP_059136 C/T R489H plus 3253921 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.42 123 "HapMap,doubleHit,freq,cluster" 12q14.3 nuclear protein double minute 1 21968 rs2306393 MDM1 56890 12 66995028 NM_017440 NP_059136 C/T R489H plus 3253921 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 12q14.3 nuclear protein double minute 1 21969 rs2306393 MDM1 56890 12 66995028 NM_017440 NP_059136 C/T R489H plus 23998101 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 12q14.3 nuclear protein double minute 1 21970 rs2306393 MDM1 56890 12 66995028 NM_017440 NP_059136 C/T R489H plus 23998101 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 12q14.3 nuclear protein double minute 1 21971 rs2306393 MDM1 56890 12 66995028 NM_017440 NP_059136 C/T R489H plus 23998101 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 12q14.3 nuclear protein double minute 1 21972 rs2306465 SCRG1 11341 4 174687171 NM_007281 NP_009212 C/T P42L minus 3254013 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0 100 by freq 4q31-q32 scrapie responsive protein 1 21973 rs2306536 CHFR 55743 12 132034012 NM_018223 NP_060693 C/T V539M plus 3254097 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.05 120 "HapMap,doubleHit,freq,cluster" 12q24.33 checkpoint with forkhead and ring finger domains 21974 rs2306536 CHFR 55743 12 132034012 NM_018223 NP_060693 C/T V539M plus 3254097 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 120 "HapMap,doubleHit,freq,cluster" 12q24.33 checkpoint with forkhead and ring finger domains 21975 rs2306536 CHFR 55743 12 132034012 NM_018223 NP_060693 C/T V539M plus 19253387 1303 SEQUENOM CEPH CEPH (92) 92 0.24 120 "HapMap,doubleHit,freq,cluster" 12q24.33 checkpoint with forkhead and ring finger domains 21976 rs2306541 CHFR 55743 12 132038592 NM_018223 NP_060693 A/G A456V plus 3254103 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.16 121 "HapMap,freq,cluster" 12q24.33 checkpoint with forkhead and ring finger domains 21977 rs2306541 CHFR 55743 12 132038592 NM_018223 NP_060693 A/G A456V plus 3254103 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.32 121 "HapMap,freq,cluster" 12q24.33 checkpoint with forkhead and ring finger domains 21978 rs2306575 MYO9A 4649 15 69959937 NM_006901 NP_008832 C/G H1805Q minus 24046555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by submitter,freq,cluster" 15q22-q23 myosin IXA 21979 rs2306575 MYO9A 4649 15 69959937 NM_006901 NP_008832 C/G H1805Q minus 24046555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "by submitter,freq,cluster" 15q22-q23 myosin IXA 21980 rs2306575 MYO9A 4649 15 69959937 NM_006901 NP_008832 C/G H1805Q minus 24046555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by submitter,freq,cluster" 15q22-q23 myosin IXA 21981 rs2306590 MYOHD1 80179 17 31928393 NM_025109 NP_079385 A/G L663F plus 3254165 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.38 120 "HapMap,freq,cluster" 17q21.1 myosin head domain containing 1 21982 rs2306590 MYOHD1 80179 17 31928393 NM_025109 NP_079385 A/G L663F plus 10863215 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 120 "HapMap,freq,cluster" 17q21.1 myosin head domain containing 1 21983 rs2306590 MYOHD1 80179 17 31928393 NM_025109 NP_079385 A/G L663F plus 10863215 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "HapMap,freq,cluster" 17q21.1 myosin head domain containing 1 21984 rs2306595 MYOHD1 80179 17 31945834 NM_025109 NP_079385 C/T N176S plus 3254171 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 123 "HapMap,freq" 17q21.1 myosin head domain containing 1 21985 rs2306595 MYOHD1 80179 17 31945834 NM_025109 NP_079385 C/T N176S plus 3254171 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.05 123 "HapMap,freq" 17q21.1 myosin head domain containing 1 21986 rs2306595 MYOHD1 80179 17 31945834 NM_025109 NP_079385 C/T N176S plus 24106621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 17q21.1 myosin head domain containing 1 21987 rs2306595 MYOHD1 80179 17 31945834 NM_025109 NP_079385 C/T N176S plus 24106621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 17q21.1 myosin head domain containing 1 21988 rs2306595 MYOHD1 80179 17 31945834 NM_025109 NP_079385 C/T N176S plus 24106621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "HapMap,freq" 17q21.1 myosin head domain containing 1 21989 rs2306618 ALDH7A1 501 5 125915695 NM_001182 NP_001173 C/T T384A plus 3254201 738 YUSUKE JBIC-ALLELE Japanese (752) 746 0.06 120 "by cluster,freq" 5q31 "aldehyde dehydrogenase 7 family, member A1" 21990 rs2306675 CDH7 1005 18 61662156 NM_004361 NP_004352 A/C D370E minus 3254271 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 100 HapMap 18q22-q23 "cadherin 7, type 2" 21991 rs2306675 CDH7 1005 18 61662156 NM_033646 NP_387450 A/C D370E minus 3254271 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 100 HapMap 18q22-q23 "cadherin 7, type 2" 21992 rs2306691 LRP1 4035 12 55825069 NM_002332 NP_002323 A/G N166D plus 3254290 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.01 100 HapMap 12q13-q14 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 21993 rs2306691 LRP1 4035 12 55825069 NM_002332 NP_002323 A/G N166D plus 3254290 885 TSC-CSHL HapMap-CEPH-30-trios 102 1 100 HapMap 12q13-q14 low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor) 21994 rs2306715 UNC5C 8633 4 96827077 NM_003728 NP_003719 G/T G37V minus 3254318 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0 100 by freq 4q21-q23 unc-5 homolog C (C. elegans) 21995 rs2306727 MICAL2 9645 11 12187688 NM_014632 NP_055447 A/G I220V plus 3254336 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 123 "HapMap,freq,cluster" 11p15.3 flavoprotein oxidoreductase MICAL2 21996 rs2306727 MICAL2 9645 11 12187688 NM_014632 NP_055447 A/G I220V plus 3254336 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 11p15.3 flavoprotein oxidoreductase MICAL2 21997 rs2306727 MICAL2 9645 11 12187688 NM_014632 NP_055447 A/G I220V plus 24086870 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 11p15.3 flavoprotein oxidoreductase MICAL2 21998 rs2306727 MICAL2 9645 11 12187688 NM_014632 NP_055447 A/G I220V plus 24086870 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 11p15.3 flavoprotein oxidoreductase MICAL2 21999 rs2306727 MICAL2 9645 11 12187688 NM_014632 NP_055447 A/G I220V plus 24086870 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 11p15.3 flavoprotein oxidoreductase MICAL2 22000 rs2306764 PDLIM7 9260 5 176847749 NM_005451 NP_005442 A/G A326T minus 3254377 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.32 120 "by cluster,freq" 5q35.3 PDZ and LIM domain 7 (enigma) 22001 rs2306764 PDLIM7 9260 5 176847749 NM_203352 NP_976227 A/G A292T minus 3254377 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.32 120 "by cluster,freq" 5q35.3 PDZ and LIM domain 7 (enigma) 22002 rs2306765 GSG1 83445 12 13134914 NM_031289 NP_112579 C/T F36L minus 3254378 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.18 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22003 rs2306765 GSG1 83445 12 13134914 NM_031289 NP_112579 C/T F36L minus 3254378 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22004 rs2306765 GSG1 83445 12 13134914 NM_031289 NP_112579 C/T F36L minus 24212043 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22005 rs2306765 GSG1 83445 12 13134914 NM_031289 NP_112579 C/T F36L minus 24212043 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22006 rs2306765 GSG1 83445 12 13134914 NM_031289 NP_112579 C/T F36L minus 24212043 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22007 rs2306765 GSG1 83445 12 13134914 NM_153823 NP_722545 C/T F39L minus 3254378 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.18 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22008 rs2306765 GSG1 83445 12 13134914 NM_153823 NP_722545 C/T F39L minus 3254378 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22009 rs2306765 GSG1 83445 12 13134914 NM_153823 NP_722545 C/T F39L minus 24212043 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22010 rs2306765 GSG1 83445 12 13134914 NM_153823 NP_722545 C/T F39L minus 24212043 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22011 rs2306765 GSG1 83445 12 13134914 NM_153823 NP_722545 C/T F39L minus 24212043 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 12p13.2 germ cell associated 1 22012 rs2306785 CCNB2 9133 15 57194070 NM_004701 NP_004692 C/T V135I minus 3254413 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 15q21.3 cyclin B2 22013 rs2306894 CLEC1 51267 12 10142712 NM_016511 NP_057595 C/G G26A minus 3254556 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.28 123 "HapMap,doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-1 22014 rs2306894 CLEC1 51267 12 10142712 NM_016511 NP_057595 C/G G26A minus 11016111 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.15 123 "HapMap,doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-1 22015 rs2306894 CLEC1 51267 12 10142712 NM_016511 NP_057595 C/G G26A minus 24210018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-1 22016 rs2306894 CLEC1 51267 12 10142712 NM_016511 NP_057595 C/G G26A minus 24210018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-1 22017 rs2306894 CLEC1 51267 12 10142712 NM_016511 NP_057595 C/G G26A minus 24210018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 12p13.31 C-type lectin-like receptor-1 22018 rs2306897 TRIM3 10612 11 6428709 NM_006458 NP_006449 A/C R620L plus 3254559 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p15.5 tripartite motif-containing 3 22019 rs2306897 TRIM3 10612 11 6428709 NM_033278 NP_150594 A/C R620L plus 3254559 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 11p15.5 tripartite motif-containing 3 22020 rs2306899 DDHD2 23259 8 38214819 XM_291291 XP_291291 A/G T186M minus 3254564 738 YUSUKE JBIC-ALLELE Japanese (752) 1114 0.31 123 "by doubleHit,submitter,freq,cluster" 8p11.23 DDHD domain containing 2 22021 rs2306899 DDHD2 23259 8 38214819 XM_291291 XP_291291 A/G T186M minus 24015290 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 8p11.23 DDHD domain containing 2 22022 rs2306899 DDHD2 23259 8 38214819 XM_291291 XP_291291 A/G T186M minus 24015290 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by doubleHit,submitter,freq,cluster" 8p11.23 DDHD domain containing 2 22023 rs2306899 DDHD2 23259 8 38214819 XM_291291 XP_291291 A/G T186M minus 24015290 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 8p11.23 DDHD domain containing 2 22024 rs2306914 SYNE1 23345 6 152732224 NM_033071 NP_149062 A/G T5355M plus 3254585 738 YUSUKE JBIC-ALLELE Japanese (752) 894 0.16 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22025 rs2306914 SYNE1 23345 6 152732224 NM_033071 NP_149062 A/G T5355M plus 24040205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22026 rs2306914 SYNE1 23345 6 152732224 NM_033071 NP_149062 A/G T5355M plus 24040205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22027 rs2306914 SYNE1 23345 6 152732224 NM_033071 NP_149062 A/G T5355M plus 24040205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22028 rs2306914 SYNE1 23345 6 152732224 NM_182961 NP_892006 A/G T5426M plus 3254585 738 YUSUKE JBIC-ALLELE Japanese (752) 894 0.16 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22029 rs2306914 SYNE1 23345 6 152732224 NM_182961 NP_892006 A/G T5426M plus 24040205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22030 rs2306914 SYNE1 23345 6 152732224 NM_182961 NP_892006 A/G T5426M plus 24040205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22031 rs2306914 SYNE1 23345 6 152732224 NM_182961 NP_892006 A/G T5426M plus 24040205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 6q25 "spectrin repeat containing, nuclear envelope 1" 22032 rs2306916 SYNE1 23345 6 152739795 NM_033071 NP_149062 A/T L4944M plus 3254587 738 YUSUKE JBIC-ALLELE Japanese (752) 718 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22033 rs2306916 SYNE1 23345 6 152739795 NM_033071 NP_149062 A/T L4944M plus 10325168 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22034 rs2306916 SYNE1 23345 6 152739795 NM_033071 NP_149062 A/T L4944M plus 24040316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22035 rs2306916 SYNE1 23345 6 152739795 NM_033071 NP_149062 A/T L4944M plus 24040316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22036 rs2306916 SYNE1 23345 6 152739795 NM_033071 NP_149062 A/T L4944M plus 24040316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22037 rs2306916 SYNE1 23345 6 152739795 NM_182961 NP_892006 A/T L5015M plus 3254587 738 YUSUKE JBIC-ALLELE Japanese (752) 718 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22038 rs2306916 SYNE1 23345 6 152739795 NM_182961 NP_892006 A/T L5015M plus 10325168 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22039 rs2306916 SYNE1 23345 6 152739795 NM_182961 NP_892006 A/T L5015M plus 24040316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22040 rs2306916 SYNE1 23345 6 152739795 NM_182961 NP_892006 A/T L5015M plus 24040316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22041 rs2306916 SYNE1 23345 6 152739795 NM_182961 NP_892006 A/T L5015M plus 24040316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 22042 rs2306942 LAMA2 3908 6 129677493 NM_000426 NP_000417 C/T V1138M minus 3254633 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.16 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 22043 rs2306942 LAMA2 3908 6 129677493 NM_000426 NP_000417 C/T V1138M minus 23964998 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 22044 rs2306942 LAMA2 3908 6 129677493 NM_000426 NP_000417 C/T V1138M minus 23964998 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 22045 rs2306942 LAMA2 3908 6 129677493 NM_000426 NP_000417 C/T V1138M minus 23964998 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 22046 rs2306985 MTP 4547 4 100873200 NM_000253 NP_000244 C/G H297Q plus 3254694 738 YUSUKE JBIC-ALLELE Japanese (752) 750 0.3 123 "HapMap,submitter,freq,cluster" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22047 rs2306985 MTP 4547 4 100873200 NM_000253 NP_000244 C/G H297Q plus 11684928 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,submitter,freq,cluster" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22048 rs2306985 MTP 4547 4 100873200 NM_000253 NP_000244 C/G H297Q plus 24366024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22049 rs2306985 MTP 4547 4 100873200 NM_000253 NP_000244 C/G H297Q plus 24366024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,submitter,freq,cluster" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22050 rs2306985 MTP 4547 4 100873200 NM_000253 NP_000244 C/G H297Q plus 24366024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,submitter,freq,cluster" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22051 rs2306986 MTP 4547 4 100861753 NM_000253 NP_000244 C/G E98D plus 3254695 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 121 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 22052 rs2307145 IL12RB2 3595 1 67545548 NM_001559 NP_001550 C/G Q426H plus 3254918 506 NCBI NIHPDR NIHPDR 80 0.05 123 "by submitter,freq,cluster" 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 22053 rs2307145 IL12RB2 3595 1 67545548 NM_001559 NP_001550 C/G Q426H plus 28446450 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 123 "by submitter,freq,cluster" 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 22054 rs2307153 IL12RB2 3595 1 67545664 NM_001559 NP_001550 A/G G465D plus 3254927 506 NCBI NIHPDR NIHPDR 82 0.01 123 by freq 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 22055 rs2307153 IL12RB2 3595 1 67545664 NM_001559 NP_001550 A/G G465D plus 28446336 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 123 by freq 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 22056 rs2307184 XRCC1 7515 19 48742071 NM_006297 NP_006288 A/C S485Y minus 3254967 506 NCBI NIHPDR NIHPDR 820 0 100 "HapMap,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22057 rs2307184 XRCC1 7515 19 48742071 NM_006297 NP_006288 A/C S485Y minus 3254967 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22058 rs2307186 XRCC1 7515 19 48771431 NM_006297 NP_006288 G/T R7L minus 3254969 506 NCBI NIHPDR NIHPDR 796 0 100 by freq 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22059 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 3254972 506 NCBI NIHPDR NIHPDR 826 0 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22060 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 5586979 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22061 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 5586979 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22062 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 5586979 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22063 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 5586979 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22064 rs2307188 XRCC1 7515 19 48748197 NM_006297 NP_006288 A/C K298N minus 5586979 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22065 rs2307191 XRCC1 7515 19 48749608 NM_006297 NP_006288 C/T P161L minus 3254975 506 NCBI NIHPDR NIHPDR 816 0 106 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22066 rs2307191 XRCC1 7515 19 48749608 NM_006297 NP_006288 C/T P161L minus 4473973 693 EGP_SNPS PDR90 NIHPDR 168 0.01 106 "by cluster,freq" 19q13.2 X-ray repair complementing defective repair in Chinese hamster cells 1 22067 rs2307198 PLA2G4A 5321 1 183678569 NM_024420 NP_077734 A/G R651K plus 3254982 506 NCBI NIHPDR NIHPDR 84 0.02 123 "by cluster,freq" 1q25 "phospholipase A2, group IVA (cytosolic, calcium-dependent)" 22068 rs2307198 PLA2G4A 5321 1 183678569 NM_024420 NP_077734 A/G R651K plus 20418623 693 EGP_SNPS PDR90 NIHPDR 178 0.02 123 "by cluster,freq" 1q25 "phospholipase A2, group IVA (cytosolic, calcium-dependent)" 22069 rs2307198 PLA2G4A 5321 1 183678569 NM_024420 NP_077734 A/G R651K plus 24267026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q25 "phospholipase A2, group IVA (cytosolic, calcium-dependent)" 22070 rs2307198 PLA2G4A 5321 1 183678569 NM_024420 NP_077734 A/G R651K plus 24267026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q25 "phospholipase A2, group IVA (cytosolic, calcium-dependent)" 22071 rs2307198 PLA2G4A 5321 1 183678569 NM_024420 NP_077734 A/G R651K plus 24267026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q25 "phospholipase A2, group IVA (cytosolic, calcium-dependent)" 22072 rs2307227 CES1 1066 16 54412862 NM_001266 NP_001257 A/C D203E minus 3255029 506 NCBI NIHPDR NIHPDR 82 0.04 100 by freq 16q13-q22.1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 22073 rs2307240 CES1 1066 16 54420213 NM_001266 NP_001257 A/G S75N minus 3255044 506 NCBI NIHPDR NIHPDR 78 0.05 120 "by cluster,freq" 16q13-q22.1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) 22074 rs2307254 HUS1 3364 7 47789593 NM_004507 NP_004498 A/C Q147K minus 3255063 506 NCBI NIHPDR NIHPDR 854 0.03 123 "by cluster,freq" 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22075 rs2307254 HUS1 3364 7 47789593 NM_004507 NP_004498 A/C Q147K minus 4390130 693 EGP_SNPS PDR90 NIHPDR 158 0.02 123 "by cluster,freq" 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22076 rs2307254 HUS1 3364 7 47789593 NM_004507 NP_004498 A/C Q147K minus 24184438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22077 rs2307254 HUS1 3364 7 47789593 NM_004507 NP_004498 A/C Q147K minus 24184438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22078 rs2307254 HUS1 3364 7 47789593 NM_004507 NP_004498 A/C Q147K minus 24184438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22079 rs2307261 HUS1 3364 7 47789656 NM_004507 NP_004498 A/G S126G minus 3255072 506 NCBI NIHPDR NIHPDR 856 0 100 HapMap 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22080 rs2307261 HUS1 3364 7 47789656 NM_004507 NP_004498 A/G S126G minus 3255072 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 7p13-p12 HUS1 checkpoint homolog (S. pombe) 22081 rs2307279 PLA2G4C 8605 19 53300410 NM_003706 NP_003697 C/G A38P minus 3255091 506 NCBI NIHPDR NIHPDR 72 0.24 120 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 22082 rs2307279 PLA2G4C 8605 19 53300410 NM_003706 NP_003697 C/G A38P minus 4946850 738 YUSUKE JBIC-ALLELE Japanese (752) 1258 0.27 120 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 22083 rs2307279 PLA2G4C 8605 19 53300410 NM_003706 NP_003697 C/G A38P minus 16316137 693 EGP_SNPS PDR90 NIHPDR 176 0.19 120 "by doubleHit,freq,cluster" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 22084 rs2307282 PLA2G4C 8605 19 53294745 NM_003706 NP_003697 A/G R148G minus 3255096 506 NCBI NIHPDR NIHPDR 74 0.01 120 "by cluster,freq" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 22085 rs2307282 PLA2G4C 8605 19 53294745 NM_003706 NP_003697 A/G R148G minus 16316154 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 "by cluster,freq" 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 22086 rs2307289 MBD4 8930 3 130638161 NM_003925 NP_003916 C/T S342P minus 3255105 506 NCBI NIHPDR NIHPDR 802 0.05 123 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22087 rs2307289 MBD4 8930 3 130638161 NM_003925 NP_003916 C/T S342P minus 4385590 693 EGP_SNPS PDR90 NIHPDR 180 0.06 123 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22088 rs2307289 MBD4 8930 3 130638161 NM_003925 NP_003916 C/T S342P minus 23279733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22089 rs2307289 MBD4 8930 3 130638161 NM_003925 NP_003916 C/T S342P minus 23279733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22090 rs2307289 MBD4 8930 3 130638161 NM_003925 NP_003916 C/T S342P minus 23279733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22091 rs2307293 MBD4 8930 3 130633083 NM_003925 NP_003916 C/G D568H minus 3255111 506 NCBI NIHPDR NIHPDR 796 0 104 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22092 rs2307293 MBD4 8930 3 130633083 NM_003925 NP_003916 C/G D568H minus 4385623 693 EGP_SNPS PDR90 NIHPDR 168 0.01 104 "by cluster,freq" 3q21-q22 methyl-CpG binding domain protein 4 22093 rs2307298 MBD4 8930 3 130638112 NM_003925 NP_003916 C/T I358T minus 3255118 506 NCBI NIHPDR NIHPDR 872 0 100 by freq 3q21-q22 methyl-CpG binding domain protein 4 22094 rs2307306 GMNN 51053 6 24889714 NM_015895 NP_056979 C/T R54W plus 3255129 506 NCBI NIHPDR NIHPDR 162 0.06 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22095 rs2307306 GMNN 51053 6 24889714 NM_015895 NP_056979 C/T R54W plus 23714078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22096 rs2307306 GMNN 51053 6 24889714 NM_015895 NP_056979 C/T R54W plus 23714078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22097 rs2307306 GMNN 51053 6 24889714 NM_015895 NP_056979 C/T R54W plus 23714078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22098 rs2307307 GMNN 51053 6 24889698 NM_015895 NP_056979 C/G L48F plus 3255130 506 NCBI NIHPDR NIHPDR 162 0.06 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22099 rs2307307 GMNN 51053 6 24889698 NM_015895 NP_056979 C/G L48F plus 23714075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22100 rs2307307 GMNN 51053 6 24889698 NM_015895 NP_056979 C/G L48F plus 23714075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22101 rs2307307 GMNN 51053 6 24889698 NM_015895 NP_056979 C/G L48F plus 23714075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p22.1 "geminin, DNA replication inhibitor" 22102 rs2307313 MCM2 4171 3 128820733 NM_004526 NP_004517 A/G A727T plus 3255138 506 NCBI NIHPDR NIHPDR 150 0.01 100 by freq 3q21 "MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" 22103 rs2307334 MCM5 4174 22 34124073 NM_006739 NP_006730 C/G S136T plus 3255163 506 NCBI NIHPDR NIHPDR 172 0.01 111 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22104 rs2307334 MCM5 4174 22 34124073 NM_006739 NP_006730 C/G S136T plus 6310448 693 EGP_SNPS PDR90 NIHPDR 174 0.01 111 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22105 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 3255175 506 NCBI NIHPDR NIHPDR 166 0.03 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22106 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 6310463 693 EGP_SNPS PDR90 NIHPDR 170 0.05 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22107 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 6310463 1303 SEQUENOM CEPH CEPH (92) 92 0.12 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22108 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 24596968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22109 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 24596968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22110 rs2307340 MCM5 4174 22 34127215 NM_006739 NP_006730 C/G T180S plus 24596968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q13.1 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" 22111 rs2307361 ORC2L 4999 2 201639794 NM_006190 NP_006181 A/T M106K minus 3255204 506 NCBI NIHPDR NIHPDR 176 0.01 123 "HapMap,freq,cluster" 2q33 "origin recognition complex, subunit 2-like (yeast)" 22112 rs2307361 ORC2L 4999 2 201639794 NM_006190 NP_006181 A/T M106K minus 3255204 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q33 "origin recognition complex, subunit 2-like (yeast)" 22113 rs2307361 ORC2L 4999 2 201639794 NM_006190 NP_006181 A/T M106K minus 28447653 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "HapMap,freq,cluster" 2q33 "origin recognition complex, subunit 2-like (yeast)" 22114 rs2307365 ORC3L 23595 6 88369923 NM_012381 NP_036513 A/C Q94K plus 3255208 506 NCBI NIHPDR NIHPDR 162 0.01 100 "HapMap,freq" 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22115 rs2307365 ORC3L 23595 6 88369923 NM_012381 NP_036513 A/C Q94K plus 3255208 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,freq" 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22116 rs2307365 ORC3L 23595 6 88369923 NM_181837 NP_862820 A/C Q94K plus 3255208 506 NCBI NIHPDR NIHPDR 162 0.01 100 "HapMap,freq" 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22117 rs2307365 ORC3L 23595 6 88369923 NM_181837 NP_862820 A/C Q94K plus 3255208 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,freq" 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22118 rs2307370 ORC3L 23595 6 88429510 NM_012381 NP_036513 C/T R588C plus 3255213 506 NCBI NIHPDR NIHPDR 172 0.01 100 HapMap 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22119 rs2307370 ORC3L 23595 6 88429510 NM_012381 NP_036513 C/T R588C plus 3255213 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22120 rs2307370 ORC3L 23595 6 88429510 NM_181837 NP_862820 C/T R589C plus 3255213 506 NCBI NIHPDR NIHPDR 172 0.01 100 HapMap 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22121 rs2307370 ORC3L 23595 6 88429510 NM_181837 NP_862820 C/T R589C plus 3255213 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22122 rs2307389 ORC3L 23595 6 88375602 NM_012381 NP_036513 A/G V217I plus 3255232 506 NCBI NIHPDR NIHPDR 172 0.02 100 by freq 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22123 rs2307389 ORC3L 23595 6 88375602 NM_181837 NP_862820 A/G V217I plus 3255232 506 NCBI NIHPDR NIHPDR 172 0.02 100 by freq 6q14.3-q16.1 "origin recognition complex, subunit 3-like (yeast)" 22124 rs2307394 ORC4L 5000 2 148550160 NM_002552 NP_002543 A/G N78S minus 3255238 506 NCBI NIHPDR NIHPDR 166 0.33 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22125 rs2307394 ORC4L 5000 2 148550160 NM_002552 NP_002543 A/G N78S minus 23879697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22126 rs2307394 ORC4L 5000 2 148550160 NM_002552 NP_002543 A/G N78S minus 23879697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22127 rs2307394 ORC4L 5000 2 148550160 NM_002552 NP_002543 A/G N78S minus 23879697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22128 rs2307394 ORC4L 5000 2 148550160 NM_181741 NP_859525 A/G N78S minus 3255238 506 NCBI NIHPDR NIHPDR 166 0.33 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22129 rs2307394 ORC4L 5000 2 148550160 NM_181741 NP_859525 A/G N78S minus 23879697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22130 rs2307394 ORC4L 5000 2 148550160 NM_181741 NP_859525 A/G N78S minus 23879697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22131 rs2307394 ORC4L 5000 2 148550160 NM_181741 NP_859525 A/G N78S minus 23879697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22132 rs2307394 ORC4L 5000 2 148550160 NM_181742 NP_859526 A/G N78S minus 3255238 506 NCBI NIHPDR NIHPDR 166 0.33 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22133 rs2307394 ORC4L 5000 2 148550160 NM_181742 NP_859526 A/G N78S minus 23879697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22134 rs2307394 ORC4L 5000 2 148550160 NM_181742 NP_859526 A/G N78S minus 23879697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22135 rs2307394 ORC4L 5000 2 148550160 NM_181742 NP_859526 A/G N78S minus 23879697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by submitter,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22136 rs2307397 ORC4L 5000 2 148564099 NM_002552 NP_002543 C/G L56V minus 3255241 506 NCBI NIHPDR NIHPDR 178 0.03 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22137 rs2307397 ORC4L 5000 2 148564099 NM_002552 NP_002543 C/G L56V minus 3255241 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22138 rs2307397 ORC4L 5000 2 148564099 NM_181741 NP_859525 C/G L56V minus 3255241 506 NCBI NIHPDR NIHPDR 178 0.03 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22139 rs2307397 ORC4L 5000 2 148564099 NM_181741 NP_859525 C/G L56V minus 3255241 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22140 rs2307397 ORC4L 5000 2 148564099 NM_181742 NP_859526 C/G L56V minus 3255241 506 NCBI NIHPDR NIHPDR 178 0.03 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22141 rs2307397 ORC4L 5000 2 148564099 NM_181742 NP_859526 C/G L56V minus 3255241 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq,cluster" 2q22-q23 "origin recognition complex, subunit 4-like (yeast)" 22142 rs2307413 ORC5L 5001 7 103438550 NM_002553 NP_002544 A/T K52N minus 3255259 506 NCBI NIHPDR NIHPDR 168 0.02 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22143 rs2307413 ORC5L 5001 7 103438550 NM_002553 NP_002544 A/T K52N minus 23422218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22144 rs2307413 ORC5L 5001 7 103438550 NM_002553 NP_002544 A/T K52N minus 23422218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22145 rs2307413 ORC5L 5001 7 103438550 NM_002553 NP_002544 A/T K52N minus 23422218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22146 rs2307413 ORC5L 5001 7 103438550 NM_181747 NP_859531 A/T K52N minus 3255259 506 NCBI NIHPDR NIHPDR 168 0.02 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22147 rs2307413 ORC5L 5001 7 103438550 NM_181747 NP_859531 A/T K52N minus 23422218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22148 rs2307413 ORC5L 5001 7 103438550 NM_181747 NP_859531 A/T K52N minus 23422218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22149 rs2307413 ORC5L 5001 7 103438550 NM_181747 NP_859531 A/T K52N minus 23422218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q22.1 "origin recognition complex, subunit 5-like (yeast)" 22150 rs2307440 POLG 5428 15 87662822 NM_002693 NP_002684 C/T R1146C minus 3255287 506 NCBI NIHPDR NIHPDR 164 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22151 rs2307440 POLG 5428 15 87662822 NM_002693 NP_002684 C/T R1146C minus 4388373 693 EGP_SNPS PDR90 NIHPDR 126 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22152 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 3255288 506 NCBI NIHPDR NIHPDR 164 0.04 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22153 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 4388372 693 EGP_SNPS PDR90 NIHPDR 118 0.03 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22154 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 4388372 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22155 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 24511266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22156 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 24511266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22157 rs2307441 POLG 5428 15 87662830 NM_002693 NP_002684 A/G E1143G minus 24511266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22158 rs2307442 POLG 5428 15 87662834 NM_002693 NP_002684 C/T R1142W minus 3255289 506 NCBI NIHPDR NIHPDR 164 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22159 rs2307442 POLG 5428 15 87662834 NM_002693 NP_002684 C/T R1142W minus 4388371 693 EGP_SNPS PDR90 NIHPDR 130 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22160 rs2307447 POLG 5428 15 87670923 NM_002693 NP_002684 C/T R546C minus 3255294 506 NCBI NIHPDR NIHPDR 176 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22161 rs2307447 POLG 5428 15 87670923 NM_002693 NP_002684 C/T R546C minus 4388328 693 EGP_SNPS PDR90 NIHPDR 168 0.01 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22162 rs2307450 POLG 5428 15 87668428 NM_002693 NP_002684 A/G E662K minus 3255297 506 NCBI NIHPDR NIHPDR 176 0.03 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22163 rs2307450 POLG 5428 15 87668428 NM_002693 NP_002684 A/G E662K minus 4388341 693 EGP_SNPS PDR90 NIHPDR 136 0.04 106 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 22164 rs2307456 POLH 5429 6 43673546 NM_006502 NP_006493 G/T G209V plus 3255304 506 NCBI NIHPDR NIHPDR 174 0.01 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 22165 rs2307456 POLH 5429 6 43673546 NM_006502 NP_006493 G/T G209V plus 12709504 693 EGP_SNPS PDR90 NIHPDR 162 0.01 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 22166 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 3255336 506 NCBI NIHPDR NIHPDR 172 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22167 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 4385205 693 EGP_SNPS PDR90 NIHPDR 178 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22168 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22169 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22170 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22171 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22172 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22173 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 5586240 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22174 rs2307486 APEX1 328 14 19994044 NM_001641 NP_001632 A/G I64V plus 20399334 1035 LOGE SHHP-1 Asian 286 0.05 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22175 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 3255336 506 NCBI NIHPDR NIHPDR 172 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22176 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 4385205 693 EGP_SNPS PDR90 NIHPDR 178 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22177 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22178 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22179 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22180 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22181 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22182 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 5586240 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22183 rs2307486 APEX1 328 14 19994044 NM_080648 NP_542379 A/G I64V plus 20399334 1035 LOGE SHHP-1 Asian 286 0.05 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22184 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 3255336 506 NCBI NIHPDR NIHPDR 172 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22185 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 4385205 693 EGP_SNPS PDR90 NIHPDR 178 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22186 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22187 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22188 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22189 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22190 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22191 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 5586240 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22192 rs2307486 APEX1 328 14 19994044 NM_080649 NP_542380 A/G I64V plus 20399334 1035 LOGE SHHP-1 Asian 286 0.05 121 "by cluster,freq" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 22193 rs2307491 ERCC5 2073 13 102312432 NM_000123 NP_000114 C/G S311C plus 3255341 506 NCBI NIHPDR NIHPDR 86 0.01 110 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 22194 rs2307491 ERCC5 2073 13 102312432 NM_000123 NP_000114 C/G S311C plus 5605244 693 EGP_SNPS PDR90 NIHPDR 176 0.01 110 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 22195 rs2307492 FMO2 2327 1 167900203 NM_001460 NP_001451 C/T F182S plus 3255342 506 NCBI NIHPDR NIHPDR 80 0.04 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 22196 rs2307492 FMO2 2327 1 167900203 NM_001460 NP_001451 C/T F182S plus 23198624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 22197 rs2307492 FMO2 2327 1 167900203 NM_001460 NP_001451 C/T F182S plus 23198624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 22198 rs2307492 FMO2 2327 1 167900203 NM_001460 NP_001451 C/T F182S plus 23198624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 1q23-q25 flavin containing monooxygenase 2 22199 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 3256171 506 NCBI NIHPDR NIHPDR 840 0 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22200 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 5586774 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22201 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 5586774 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22202 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 5586774 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22203 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 5586774 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22204 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 5586774 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22205 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 24467287 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22206 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 24467287 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22207 rs2308313 MPG 4350 16 73093 NM_002434 NP_002425 C/T R120C plus 24467287 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 16p13.3 N-methylpurine-DNA glycosylase 22208 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 3256180 506 NCBI NIHPDR NIHPDR 76 0.01 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22209 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22210 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22211 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22212 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22213 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22214 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 5586768 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22215 rs2308317 MLH1 4292 3 37028554 NM_000249 NP_000240 A/G V213M plus 6312968 693 EGP_SNPS PDR90 NIHPDR 176 0.01 113 "by cluster,freq" 3p21.3 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" 22216 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 3256181 506 NCBI NIHPDR NIHPDR 808 0 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22217 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 5586755 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22218 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 5586755 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22219 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 5586755 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22220 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 5586755 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22221 rs2308318 MGMT 4255 10 131455105 NM_002412 NP_002403 A/G G160R plus 5586755 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22222 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 3256184 506 NCBI NIHPDR NIHPDR 802 0.05 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22223 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22224 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22225 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22226 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22227 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22228 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 5586754 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22229 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 24537951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22230 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 24537951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22231 rs2308321 MGMT 4255 10 131455054 NM_002412 NP_002403 A/G I143V plus 24537951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22232 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 3256191 506 NCBI NIHPDR NIHPDR 812 0.05 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22233 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22234 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.13 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22235 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22236 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22237 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22238 rs2308327 MGMT 4255 10 131455160 NM_002412 NP_002403 A/G K178R plus 5586756 1303 SEQUENOM CEPH CEPH (92) 92 0.21 113 "by cluster,freq" 10q26 O-6-methylguanine-DNA methyltransferase 22239 rs2308331 HLA-B 3106 6 31432904 NM_005514 NP_005505 C/T M4T minus 24796275 1303 SEQUENOM CEPH CEPH (92) 184 0.09 123 by freq 6p21.3 "major histocompatibility complex, class I, B" 22240 rs2308503 HLA-B 3106 6 31430959 NM_005514 NP_005505 A/G V306I minus 24810023 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 by freq 6p21.3 "major histocompatibility complex, class I, B" 22241 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 3256825 506 NCBI NIHPDR NIHPDR 710 0.01 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22242 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 6310819 693 EGP_SNPS PDR90 NIHPDR 178 0.02 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22243 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 12675298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22244 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 12675298 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22245 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 12675298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22246 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 12675298 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22247 rs2308941 CASP9 842 1 15590024 NM_001229 NP_001220 C/T T102I minus 12675298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22248 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 3256825 506 NCBI NIHPDR NIHPDR 710 0.01 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22249 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 6310819 693 EGP_SNPS PDR90 NIHPDR 178 0.02 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22250 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 12675298 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22251 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 12675298 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22252 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 12675298 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22253 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 12675298 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22254 rs2308941 CASP9 842 1 15590024 NM_032996 NP_127463 C/T T102I minus 12675298 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by submitter,freq,cluster" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22255 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 3256834 506 NCBI NIHPDR NIHPDR 844 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22256 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 12675311 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22257 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 12675311 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22258 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 12675311 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22259 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 12675311 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22260 rs2308949 CASP9 842 1 15578804 NM_001229 NP_001220 A/G G176R minus 12675311 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22261 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 3256835 506 NCBI NIHPDR NIHPDR 844 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22262 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 6310860 693 EGP_SNPS PDR90 NIHPDR 172 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22263 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 12675300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22264 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 12675300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22265 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 12675300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22266 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 12675300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22267 rs2308950 CASP9 842 1 15578812 NM_001229 NP_001220 A/G R173H minus 12675300 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 22268 rs2308957 RAD1 5810 5 34947641 NM_002853 NP_002844 A/G G114D minus 3256847 506 NCBI NIHPDR NIHPDR 818 0 100 by freq 5p13.2 RAD1 homolog (S. pombe) 22269 rs2308957 RAD1 5810 5 34947641 NM_133282 NP_579816 A/G G5D minus 3256847 506 NCBI NIHPDR NIHPDR 818 0 100 by freq 5p13.2 RAD1 homolog (S. pombe) 22270 rs2308957 RAD1 5810 5 34947641 NM_133377 NP_596868 A/G G114D minus 3256847 506 NCBI NIHPDR NIHPDR 818 0 100 by freq 5p13.2 RAD1 homolog (S. pombe) 22271 rs2309428 TJP2 9414 9 69072577 NM_004817 NP_004808 A/C D482E plus 3257382 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,doubleHit,freq,cluster" 9q13-q21 tight junction protein 2 (zona occludens 2) 22272 rs2309428 TJP2 9414 9 69072577 NM_201629 NP_963923 A/C D482E plus 3257382 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,doubleHit,freq,cluster" 9q13-q21 tight junction protein 2 (zona occludens 2) 22273 rs2315151 UNQ2430 375248 2 97201361 XM_371540 XP_371540 C/T G4D minus 3263772 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 2q11.2 ankyrin-related 22274 rs2322659 LCT 3938 2 136389391 NM_002299 NP_002290 C/T N1639S plus 3272532 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 121 "HapMap,doubleHit,submitter,freq,cluster" 2q21 lactase 22275 rs2322659 LCT 3938 2 136389391 NM_002299 NP_002290 C/T N1639S plus 4925023 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.47 121 "HapMap,doubleHit,submitter,freq,cluster" 2q21 lactase 22276 rs2332285 BBAP 151636 3 123770900 NM_138287 NP_612144 A/G R425K plus 24360699 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q21.1 rhysin 2 22277 rs2332285 BBAP 151636 3 123770900 NM_138287 NP_612144 A/G R425K plus 24360699 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by cluster,freq" 3q21.1 rhysin 2 22278 rs2332285 BBAP 151636 3 123770900 NM_138287 NP_612144 A/G R425K plus 24360699 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 3q21.1 rhysin 2 22279 rs2335052 GATA2 2624 3 129687649 NM_032638 NP_116027 A/G A164T minus 24645804 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 by freq 3q21.3 GATA binding protein 2 22280 rs2335052 GATA2 2624 3 129687649 NM_032638 NP_116027 A/G A164T minus 24645804 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 by freq 3q21.3 GATA binding protein 2 22281 rs2335052 GATA2 2624 3 129687649 NM_032638 NP_116027 A/G A164T minus 24645804 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.24 123 by freq 3q21.3 GATA binding protein 2 22282 rs2336219 ASE-1 10849 19 50604246 NM_012099 NP_036231 A/G D394N plus 4473480 693 EGP_SNPS PDR90 NIHPDR 130 0.32 106 "by doubleHit,freq,cluster" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 22283 rs2336573 8D6A 51293 19 8273709 NM_016579 NP_057663 C/T G220R plus 23582742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 8D6 antigen 22284 rs2336573 8D6A 51293 19 8273709 NM_016579 NP_057663 C/T G220R plus 23582742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 8D6 antigen 22285 rs2336573 8D6A 51293 19 8273709 NM_016579 NP_057663 C/T G220R plus 23582742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 19p13.3-p13.2 8D6 antigen 22286 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22287 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 901 AFFY AfAm 12 0.08 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22288 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 902 AFFY Caucasian 22 1 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22289 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 903 AFFY Asian 12 0.08 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22290 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 904 AFFY CEPH 12 0.08 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22291 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 3292929 905 AFFY PDpanel 46 0.13 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22292 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 23890057 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22293 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 23890057 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22294 rs2339844 MRPL47 57129 3 180805087 NM_020409 NP_065142 A/C C10G plus 23890057 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 22295 rs2340601 MOV10L1 54456 22 48874930 NM_018995 NP_061868 A/G V650I plus 24214790 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 22296 rs2340601 MOV10L1 54456 22 48874930 NM_018995 NP_061868 A/G V650I plus 24214790 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 22297 rs2340601 MOV10L1 54456 22 48874930 NM_018995 NP_061868 A/G V650I plus 24214790 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 22298 rs2341097 SIX5 147912 19 50960742 NM_175875 NP_787071 C/T V693M plus 3294380 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 120 "HapMap,doubleHit,freq,cluster" 19q13.32 sine oculis homeobox homolog 5 (Drosophila) 22299 rs2341432 OR52B6 340980 11 5559014 XM_291806 XP_291806 A/T L111H plus 23560347 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22300 rs2341432 OR52B6 340980 11 5559014 XM_291806 XP_291806 A/T L111H plus 23560347 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22301 rs2341432 OR52B6 340980 11 5559014 XM_291806 XP_291806 A/T L111H plus 23560347 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22302 rs2341433 OR52B6 340980 11 5559181 XM_291806 XP_291806 A/G A167T plus 23560356 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22303 rs2341433 OR52B6 340980 11 5559181 XM_291806 XP_291806 A/G A167T plus 23560356 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22304 rs2341433 OR52B6 340980 11 5559181 XM_291806 XP_291806 A/G A167T plus 23560356 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22305 rs2341434 OR52B6 340980 11 5559191 XM_291806 XP_291806 A/G H170R plus 23560368 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22306 rs2341434 OR52B6 340980 11 5559191 XM_291806 XP_291806 A/G H170R plus 23560368 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22307 rs2341434 OR52B6 340980 11 5559191 XM_291806 XP_291806 A/G H170R plus 23560368 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily B, member 6" 22308 rs2342767 RAET1E 135250 6 150301831 NM_139165 NP_631904 C/G V237L plus 24489634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 22309 rs2342767 RAET1E 135250 6 150301831 NM_139165 NP_631904 C/G V237L plus 24489634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 22310 rs2342767 RAET1E 135250 6 150301831 NM_139165 NP_631904 C/G V237L plus 24489634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 22311 rs2353552 POLN 353497 4 2177296 NM_181808 NP_861524 A/C Q121H plus 24302513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 4p16.3 polymerase (DNA directed) nu 22312 rs2353552 POLN 353497 4 2177296 NM_181808 NP_861524 A/C Q121H plus 24302513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4p16.3 polymerase (DNA directed) nu 22313 rs2353552 POLN 353497 4 2177296 NM_181808 NP_861524 A/C Q121H plus 24302513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p16.3 polymerase (DNA directed) nu 22314 rs2356590 CUBN 8029 10 17019612 NM_001081 NP_001072 G/T P1971T plus 23891881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 22315 rs2356590 CUBN 8029 10 17019612 NM_001081 NP_001072 G/T P1971T plus 23891881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 22316 rs2356590 CUBN 8029 10 17019612 NM_001081 NP_001072 G/T P1971T plus 23891881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 22317 rs2360543 ZNF530 348327 19 62809035 NM_020880 NP_065931 A/T H110Q minus 3317190 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 530 22318 rs2360543 ZNF530 348327 19 62809035 NM_020880 NP_065931 A/T H110Q minus 24782962 1303 SEQUENOM CEPH CEPH (92) 184 0.38 123 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 530 22319 rs2363468 PIP5K3 200576 2 209015836 NM_015040 NP_055855 C/T L932S plus 3320606 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 22320 rs2363468 PIP5K3 200576 2 209015836 NM_015040 NP_055855 C/T L932S plus 23215733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 22321 rs2363468 PIP5K3 200576 2 209015836 NM_015040 NP_055855 C/T L932S plus 23215733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 22322 rs2363468 PIP5K3 200576 2 209015836 NM_015040 NP_055855 C/T L932S plus 23215733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 22323 rs2364600 ESPL1 9700 12 51949340 NM_012291 NP_036423 C/T A116V plus 3321954 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 22324 rs2364600 ESPL1 9700 12 51949340 NM_012291 NP_036423 C/T A116V plus 23365318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 22325 rs2364600 ESPL1 9700 12 51949340 NM_012291 NP_036423 C/T A116V plus 23365318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 22326 rs2364600 ESPL1 9700 12 51949340 NM_012291 NP_036423 C/T A116V plus 23365318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8 extra spindle poles like 1 (S. cerevisiae) 22327 rs2366894 BIRC6 57448 2 32625357 NM_016252 NP_057336 A/T T2646S plus 3324641 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,freq,cluster" 2p22-p21 baculoviral IAP repeat-containing 6 (apollon) 22328 rs2366894 BIRC6 57448 2 32625357 NM_016252 NP_057336 A/T T2646S plus 23165424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 2p22-p21 baculoviral IAP repeat-containing 6 (apollon) 22329 rs2366894 BIRC6 57448 2 32625357 NM_016252 NP_057336 A/T T2646S plus 23165424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 2p22-p21 baculoviral IAP repeat-containing 6 (apollon) 22330 rs2366894 BIRC6 57448 2 32625357 NM_016252 NP_057336 A/T T2646S plus 23165424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 2p22-p21 baculoviral IAP repeat-containing 6 (apollon) 22331 rs2369063 PKD1 5310 16 2104176 NM_000296 NP_000287 C/T L950P minus 4929543 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.12 110 "by cluster,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 22332 rs2370134 ZIM3 114026 19 62341712 NM_052882 NP_443114 A/G E28K minus 3328493 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq" 19q13.4 "zinc finger, imprinted 3" 22333 rs2370134 ZIM3 114026 19 62341712 NM_052882 NP_443114 A/G E28K minus 24719706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,doubleHit,freq" 19q13.4 "zinc finger, imprinted 3" 22334 rs2370134 ZIM3 114026 19 62341712 NM_052882 NP_443114 A/G E28K minus 24719706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq" 19q13.4 "zinc finger, imprinted 3" 22335 rs2370134 ZIM3 114026 19 62341712 NM_052882 NP_443114 A/G E28K minus 24719706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.1 123 "HapMap,doubleHit,freq" 19q13.4 "zinc finger, imprinted 3" 22336 rs2372536 ATIC 471 2 216015526 NM_004044 NP_004035 C/G T116S plus 3331286 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 121 "HapMap,doubleHit,freq,cluster" 2q35 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 22337 rs2372536 ATIC 471 2 216015526 NM_004044 NP_004035 C/G T116S plus 3331286 1303 SEQUENOM CEPH CEPH (92) 92 0.41 121 "HapMap,doubleHit,freq,cluster" 2q35 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 22338 rs2375643 DNAH7 56171 2 196709431 NM_018897 NP_061720 C/T A280T plus 3334878 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 22339 rs2375643 DNAH7 56171 2 196709431 NM_018897 NP_061720 C/T A280T plus 23287738 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 22340 rs2375643 DNAH7 56171 2 196709431 NM_018897 NP_061720 C/T A280T plus 23287738 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "HapMap,doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 22341 rs2375643 DNAH7 56171 2 196709431 NM_018897 NP_061720 C/T A280T plus 23287738 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 22342 rs2376869 RELB 5971 19 50232820 NM_006509 NP_006500 A/T F558I plus 3336266 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 19q13.32 "v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian)" 22343 rs2395029 HCP5 10866 6 31539759 NM_006674 NP_006665 G/T V112G plus 3357812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 117 "HapMap,doubleHit,freq" 6p21.3 HLA complex P5 22344 rs2395617 DEF6 50619 6 35393698 NM_022047 NP_071330 A/C N287T plus 24653780 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.33-p21.1 differentially expressed in FDCP 6 homolog (mouse) 22345 rs2395617 DEF6 50619 6 35393698 NM_022047 NP_071330 A/C N287T plus 24653780 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6p21.33-p21.1 differentially expressed in FDCP 6 homolog (mouse) 22346 rs2395617 DEF6 50619 6 35393698 NM_022047 NP_071330 A/C N287T plus 24653780 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6p21.33-p21.1 differentially expressed in FDCP 6 homolog (mouse) 22347 rs2396519 SKIP 80309 2 228706819 XM_051221 XP_051221 C/G R1419P plus 3359746 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,submitter" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 22348 rs2397084 IL17F 112744 6 52209803 NM_052872 NP_443104 C/T E126G plus 15355400 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 6p12 interleukin 17F 22349 rs2397084 IL17F 112744 6 52209803 NM_052872 NP_443104 C/T E126G plus 15355400 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.1 120 "by cluster,freq" 6p12 interleukin 17F 22350 rs2397084 IL17F 112744 6 52209803 NM_052872 NP_443104 C/T E126G plus 15355400 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 6p12 interleukin 17F 22351 rs2397084 IL17F 112744 6 52209803 NM_172343 NP_758846 C/T E72G plus 15355400 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 6p12 interleukin 17F 22352 rs2397084 IL17F 112744 6 52209803 NM_172343 NP_758846 C/T E72G plus 15355400 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.1 120 "by cluster,freq" 6p12 interleukin 17F 22353 rs2397084 IL17F 112744 6 52209803 NM_172343 NP_758846 C/T E72G plus 15355400 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 6p12 interleukin 17F 22354 rs2401751 PTPN21 11099 14 88016375 NM_007039 NP_008970 C/T L385F minus 3366087 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.31 123 "HapMap,doubleHit,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 22355 rs2401751 PTPN21 11099 14 88016375 NM_007039 NP_008970 C/T L385F minus 4928691 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.32 123 "HapMap,doubleHit,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 22356 rs2401751 PTPN21 11099 14 88016375 NM_007039 NP_008970 C/T L385F minus 24710652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 22357 rs2401751 PTPN21 11099 14 88016375 NM_007039 NP_008970 C/T L385F minus 24710652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 22358 rs2401751 PTPN21 11099 14 88016375 NM_007039 NP_008970 C/T L385F minus 24710652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "HapMap,doubleHit,freq,cluster" 14q31.3 "protein tyrosine phosphatase, non-receptor type 21" 22359 rs2402073 MTAC2D1 123036 14 91338368 NM_152332 NP_689545 G/T K151T plus 3366516 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 14q32.12 membrane targeting (tandem) C2 domain containing 1 22360 rs2403730 HHLA1 10086 8 133161320 NM_005712 NP_005703 A/G P108L plus 3368416 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 123 "HapMap,doubleHit,freq,cluster" 8q24 HERV-H LTR-associating 1 22361 rs2403730 HHLA1 10086 8 133161320 NM_005712 NP_005703 A/G P108L plus 4925282 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.2 123 "HapMap,doubleHit,freq,cluster" 8q24 HERV-H LTR-associating 1 22362 rs2403730 HHLA1 10086 8 133161320 NM_005712 NP_005703 A/G P108L plus 24473479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 8q24 HERV-H LTR-associating 1 22363 rs2403730 HHLA1 10086 8 133161320 NM_005712 NP_005703 A/G P108L plus 24473479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 8q24 HERV-H LTR-associating 1 22364 rs2403730 HHLA1 10086 8 133161320 NM_005712 NP_005703 A/G P108L plus 24473479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 8q24 HERV-H LTR-associating 1 22365 rs2411837 WINS1 55180 15 98927825 NM_018148 NP_060618 C/G S472T plus 24595403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 22366 rs2411837 WINS1 55180 15 98927825 NM_018148 NP_060618 C/G S472T plus 24595403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 22367 rs2411837 WINS1 55180 15 98927825 NM_018148 NP_060618 C/G S472T plus 24595403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 15q26.3 WINS1 protein with Drosophila Lines (Lin) homologous domain 22368 rs2412504 PAK6 56924 15 38345356 NM_020168 NP_064553 A/G M76V plus 4929140 738 YUSUKE JBIC-ALLELE Japanese (752) 732 0.15 123 "by doubleHit,submitter,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 22369 rs2412504 PAK6 56924 15 38345356 NM_020168 NP_064553 A/G M76V plus 23491700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.1 123 "by doubleHit,submitter,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 22370 rs2412504 PAK6 56924 15 38345356 NM_020168 NP_064553 A/G M76V plus 23491700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.25 123 "by doubleHit,submitter,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 22371 rs2412504 PAK6 56924 15 38345356 NM_020168 NP_064553 A/G M76V plus 23491700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 "by doubleHit,submitter,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 22372 rs2412541 AF15Q14 57082 15 38701132 NM_020380 NP_065113 G/T A460S plus 24037128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22373 rs2412541 AF15Q14 57082 15 38701132 NM_020380 NP_065113 G/T A460S plus 24037128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22374 rs2412541 AF15Q14 57082 15 38701132 NM_020380 NP_065113 G/T A460S plus 24037128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22375 rs2412541 AF15Q14 57082 15 38701132 NM_144508 NP_653091 G/T A460S plus 24037128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22376 rs2412541 AF15Q14 57082 15 38701132 NM_144508 NP_653091 G/T A460S plus 24037128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22377 rs2412541 AF15Q14 57082 15 38701132 NM_144508 NP_653091 G/T A460S plus 24037128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22378 rs2412541 AF15Q14 57082 15 38701132 NM_170589 NP_733468 G/T A486S plus 24037128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22379 rs2412541 AF15Q14 57082 15 38701132 NM_170589 NP_733468 G/T A486S plus 24037128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22380 rs2412541 AF15Q14 57082 15 38701132 NM_170589 NP_733468 G/T A486S plus 24037128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 15q14 AF15q14 protein 22381 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22382 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 901 AFFY AfAm 10 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22383 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 902 AFFY Caucasian 20 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22384 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 903 AFFY Asian 12 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22385 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 904 AFFY CEPH 8 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22386 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 3382380 905 AFFY PDpanel 42 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22387 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 24046647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22388 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 24046647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22389 rs2415129 MYO9A 4649 15 69978320 NM_006901 NP_008832 C/T G1193E plus 24046647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 15q22-q23 myosin IXA 22390 rs2417534 OR13C5 138799 9 104440901 XM_071093 XP_071093 C/T V117M plus 3385148 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 5" 22391 rs2429387 MRC2 9902 17 58120747 NM_006039 NP_006030 C/T R1156H minus 23607360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 22392 rs2429387 MRC2 9902 17 58120747 NM_006039 NP_006030 C/T R1156H minus 23607360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 22393 rs2429387 MRC2 9902 17 58120747 NM_006039 NP_006030 C/T R1156H minus 23607360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 17q24.1 "mannose receptor, C type 2" 22394 rs2429467 SLC38A4 55089 12 45473037 NM_018018 NP_060488 C/T G29R plus 23947797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 12q13 "solute carrier family 38, member 4" 22395 rs2429467 SLC38A4 55089 12 45473037 NM_018018 NP_060488 C/T G29R plus 23947797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by submitter,freq,cluster" 12q13 "solute carrier family 38, member 4" 22396 rs2429467 SLC38A4 55089 12 45473037 NM_018018 NP_060488 C/T G29R plus 23947797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by submitter,freq,cluster" 12q13 "solute carrier family 38, member 4" 22397 rs2431352 IQGAP2 10788 5 75959050 NM_006633 NP_006624 G/T D527E plus 24189480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22398 rs2431352 IQGAP2 10788 5 75959050 NM_006633 NP_006624 G/T D527E plus 24189480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22399 rs2431352 IQGAP2 10788 5 75959050 NM_006633 NP_006624 G/T D527E plus 24189480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22400 rs2431363 IQGAP2 10788 5 75984406 NM_006633 NP_006624 C/T I724V minus 5002181 738 YUSUKE JBIC-ALLELE Japanese (752) 728 0.26 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22401 rs2431363 IQGAP2 10788 5 75984406 NM_006633 NP_006624 C/T I724V minus 23753198 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22402 rs2431363 IQGAP2 10788 5 75984406 NM_006633 NP_006624 C/T I724V minus 23753198 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22403 rs2431363 IQGAP2 10788 5 75984406 NM_006633 NP_006624 C/T I724V minus 23753198 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22404 rs2432404 PKD1 5310 16 2096252 NM_000296 NP_000287 A/G R2515Q minus 24810298 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 by freq 16p13.3 polycystic kidney disease 1 (autosomal dominant) 22405 rs2433031 SENP7 57337 3 102549407 NM_020654 NP_065705 A/T Q546H minus 23918620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 3q12 SUMO1/sentrin specific protease 7 22406 rs2433031 SENP7 57337 3 102549407 NM_020654 NP_065705 A/T Q546H minus 23918620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 3q12 SUMO1/sentrin specific protease 7 22407 rs2433031 SENP7 57337 3 102549407 NM_020654 NP_065705 A/T Q546H minus 23918620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 3q12 SUMO1/sentrin specific protease 7 22408 rs2433724 UNQ3033 284415 19 59237343 NM_198481 NP_940883 A/G S163G minus 3410321 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 121 "HapMap,doubleHit,submitter,freq" 19q13.42 LAIR hlog 22409 rs2434470 DEPC-1 221120 11 43897178 NM_139178 NP_631917 C/G D228E plus 24361788 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 11p11.2 prostate cancer antigen-1 22410 rs2434470 DEPC-1 221120 11 43897178 NM_139178 NP_631917 C/G D228E plus 24361788 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 11p11.2 prostate cancer antigen-1 22411 rs2434470 DEPC-1 221120 11 43897178 NM_139178 NP_631917 C/G D228E plus 24361788 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 11p11.2 prostate cancer antigen-1 22412 rs2435381 GALNACT-2 55454 10 42998802 NM_018590 NP_061060 A/G P479S minus 4944550 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.2 120 "by doubleHit,submitter,freq,cluster" 10q11.21 chondroitin sulfate GalNAcT-2 22413 rs2439928 LASS3 204219 15 98760485 NM_178842 NP_849164 A/G R370G minus 23638348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 22414 rs2439928 LASS3 204219 15 98760485 NM_178842 NP_849164 A/G R370G minus 23638348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 22415 rs2439928 LASS3 204219 15 98760485 NM_178842 NP_849164 A/G R370G minus 23638348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q26.3 LAG1 longevity assurance homolog 3 (S. cerevisiae) 22416 rs2441582 FOXD4L1 200350 2 113973431 NM_012184 NP_036316 C/T S123N minus 24809126 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 "by submitter,freq" 2q14.1 forkhead box D4 like 1 22417 rs2442426 OR51A2 401667 11 4932657 XM_377159 XP_377159 C/T M288T minus 23551274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 22418 rs2442426 OR51A2 401667 11 4932657 XM_377159 XP_377159 C/T M288T minus 23551274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 22419 rs2442426 OR51A2 401667 11 4932657 XM_377159 XP_377159 C/T M288T minus 23551274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily A, member 2" 22420 rs2442455 TTC10 8100 13 20087941 NM_006531 NP_006522 C/T M374I minus 23410215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22421 rs2442455 TTC10 8100 13 20087941 NM_006531 NP_006522 C/T M374I minus 23410215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22422 rs2442455 TTC10 8100 13 20087941 NM_006531 NP_006522 C/T M374I minus 23410215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22423 rs2442455 TTC10 8100 13 20087941 NM_175605 NP_783195 C/T M383I minus 23410215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22424 rs2442455 TTC10 8100 13 20087941 NM_175605 NP_783195 C/T M383I minus 23410215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22425 rs2442455 TTC10 8100 13 20087941 NM_175605 NP_783195 C/T M383I minus 23410215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 22426 rs2444257 Rif1 55183 2 152147603 NM_018151 NP_060621 A/T N2021Y minus 3426294 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 123 "HapMap,doubleHit,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22427 rs2444257 Rif1 55183 2 152147603 NM_018151 NP_060621 A/T N2021Y minus 23671144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22428 rs2444257 Rif1 55183 2 152147603 NM_018151 NP_060621 A/T N2021Y minus 23671144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22429 rs2444257 Rif1 55183 2 152147603 NM_018151 NP_060621 A/T N2021Y minus 23671144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22430 rs2444258 Rif1 55183 2 152147126 NM_018151 NP_060621 C/T V1862I minus 3426295 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22431 rs2444258 Rif1 55183 2 152147126 NM_018151 NP_060621 C/T V1862I minus 23671143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22432 rs2444258 Rif1 55183 2 152147126 NM_018151 NP_060621 C/T V1862I minus 23671143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "HapMap,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22433 rs2444258 Rif1 55183 2 152147126 NM_018151 NP_060621 C/T V1862I minus 23671143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22434 rs2444263 Rif1 55183 2 152137078 NM_018151 NP_060621 C/T G836S minus 3426302 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22435 rs2444263 Rif1 55183 2 152137078 NM_018151 NP_060621 C/T G836S minus 23671140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22436 rs2444263 Rif1 55183 2 152137078 NM_018151 NP_060621 C/T G836S minus 23671140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22437 rs2444263 Rif1 55183 2 152137078 NM_018151 NP_060621 C/T G836S minus 23671140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,submitter,freq,cluster" 2q24.1 telomere-associated protein RIF1 homolog 22438 rs2452505 PHYHIPL 84457 10 60675250 NM_032439 NP_115815 C/G V342L minus 3437670 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11 phytanoyl-CoA hydroxylase interacting protein-like 22439 rs2452505 PHYHIPL 84457 10 60675250 NM_032439 NP_115815 C/G V342L minus 23516206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11 phytanoyl-CoA hydroxylase interacting protein-like 22440 rs2452505 PHYHIPL 84457 10 60675250 NM_032439 NP_115815 C/G V342L minus 23516206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11 phytanoyl-CoA hydroxylase interacting protein-like 22441 rs2452505 PHYHIPL 84457 10 60675250 NM_032439 NP_115815 C/G V342L minus 23516206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,submitter,freq,cluster" 10q11 phytanoyl-CoA hydroxylase interacting protein-like 22442 rs2452600 LIM 10611 4 95854060 NM_006457 NP_006448 C/T S136F plus 23917011 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by submitter,freq,cluster" 4q22 LIM protein (similar to rat protein kinase C-binding enigma) 22443 rs2452600 LIM 10611 4 95854060 NM_006457 NP_006448 C/T S136F plus 23917011 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 4q22 LIM protein (similar to rat protein kinase C-binding enigma) 22444 rs2452600 LIM 10611 4 95854060 NM_006457 NP_006448 C/T S136F plus 23917011 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by submitter,freq,cluster" 4q22 LIM protein (similar to rat protein kinase C-binding enigma) 22445 rs2454726 GPR109B 8843 12 121725407 NM_006018 NP_006009 A/G H253R minus 5011625 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.44 120 "by doubleHit,freq,cluster" 12q24.31 G protein-coupled receptor 109B 22446 rs2455069 CD33 945 19 56420453 NM_001772 NP_001763 A/G R69G plus 3441316 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,freq,cluster" 19q13.3 CD33 antigen (gp67) 22447 rs2455069 CD33 945 19 56420453 NM_001772 NP_001763 A/G R69G plus 24686120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 19q13.3 CD33 antigen (gp67) 22448 rs2455069 CD33 945 19 56420453 NM_001772 NP_001763 A/G R69G plus 24686120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 19q13.3 CD33 antigen (gp67) 22449 rs2455069 CD33 945 19 56420453 NM_001772 NP_001763 A/G R69G plus 24686120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 19q13.3 CD33 antigen (gp67) 22450 rs2455230 IQGAP2 10788 5 75968721 NM_006633 NP_006624 C/G L629F plus 4983837 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1310 0.48 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22451 rs2455230 IQGAP2 10788 5 75968721 NM_006633 NP_006624 C/G L629F plus 24189555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22452 rs2455230 IQGAP2 10788 5 75968721 NM_006633 NP_006624 C/G L629F plus 24189555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22453 rs2455230 IQGAP2 10788 5 75968721 NM_006633 NP_006624 C/G L629F plus 24189555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 22454 rs2458236 DUOX1 53905 15 43233448 NM_017434 NP_059130 C/T L1178F plus 24019695 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22455 rs2458236 DUOX1 53905 15 43233448 NM_017434 NP_059130 C/T L1178F plus 24019695 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22456 rs2458236 DUOX1 53905 15 43233448 NM_017434 NP_059130 C/T L1178F plus 24019695 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22457 rs2458236 DUOX1 53905 15 43233448 NM_175940 NP_787954 C/T L1178F plus 24019695 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22458 rs2458236 DUOX1 53905 15 43233448 NM_175940 NP_787954 C/T L1178F plus 24019695 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22459 rs2458236 DUOX1 53905 15 43233448 NM_175940 NP_787954 C/T L1178F plus 24019695 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 15q15.3 dual oxidase 1 22460 rs2459692 PLA2G4D 283748 15 40150113 NM_178034 NP_828848 C/G G206R minus 24391082 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq" 15q14 "phospholipase A2, group IVD (cytosolic)" 22461 rs2459692 PLA2G4D 283748 15 40150113 NM_178034 NP_828848 C/G G206R minus 24391082 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "by doubleHit,freq" 15q14 "phospholipase A2, group IVD (cytosolic)" 22462 rs2459692 PLA2G4D 283748 15 40150113 NM_178034 NP_828848 C/G G206R minus 24391082 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq" 15q14 "phospholipase A2, group IVD (cytosolic)" 22463 rs2460827 SAA4 6291 11 18209752 NM_006512 NP_006503 C/T C89Y plus 23595162 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.1-p14 "serum amyloid A4, constitutive" 22464 rs2460827 SAA4 6291 11 18209752 NM_006512 NP_006503 C/T C89Y plus 23595162 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 11p15.1-p14 "serum amyloid A4, constitutive" 22465 rs2460827 SAA4 6291 11 18209752 NM_006512 NP_006503 C/T C89Y plus 23595162 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 11p15.1-p14 "serum amyloid A4, constitutive" 22466 rs2462961 KRT24 192666 17 36109298 NM_019016 NP_061889 C/T K429E plus 23625803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 22467 rs2462961 KRT24 192666 17 36109298 NM_019016 NP_061889 C/T K429E plus 23625803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 22468 rs2462961 KRT24 192666 17 36109298 NM_019016 NP_061889 C/T K429E plus 23625803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 17q11.2 keratin 24 22469 rs2464196 TCF1 6927 12 119898147 NM_000545 NP_000536 C/T S487N minus 3454712 885 TSC-CSHL HapMap-CEPH-30-trios 94 0.23 123 "HapMap,doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 22470 rs2464196 TCF1 6927 12 119898147 NM_000545 NP_000536 C/T S487N minus 4474250 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.46 123 "HapMap,doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 22471 rs2464196 TCF1 6927 12 119898147 NM_000545 NP_000536 C/T S487N minus 23933092 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 22472 rs2464196 TCF1 6927 12 119898147 NM_000545 NP_000536 C/T S487N minus 23933092 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 22473 rs2464196 TCF1 6927 12 119898147 NM_000545 NP_000536 C/T S487N minus 23933092 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 12q24.2 "transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor" 22474 rs2465811 PTPRB 5787 12 69276321 NM_002837 NP_002828 C/T S127G plus 11040632 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 22475 rs2465811 PTPRB 5787 12 69276321 NM_002837 NP_002828 C/T S127G plus 23660787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 22476 rs2465811 PTPRB 5787 12 69276321 NM_002837 NP_002828 C/T S127G plus 23660787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 22477 rs2465811 PTPRB 5787 12 69276321 NM_002837 NP_002828 C/T S127G plus 23660787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 12q15-q21 "protein tyrosine phosphatase, receptor type, B" 22478 rs2466614 OR8G2 26492 11 123601094 XM_370662 XP_370662 C/T I163V minus 3457903 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 100 "HapMap,submitter,freq" 11q24.2 "olfactory receptor, family 8, subfamily G, member 2" 22479 rs2468844 SAA2 6289 11 18223603 NM_030754 NP_110381 A/G R89H minus 3460862 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1-p14 serum amyloid A2 22480 rs2468844 SAA2 6289 11 18223603 NM_030754 NP_110381 A/G R89H minus 23595249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1-p14 serum amyloid A2 22481 rs2468844 SAA2 6289 11 18223603 NM_030754 NP_110381 A/G R89H minus 23595249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1-p14 serum amyloid A2 22482 rs2468844 SAA2 6289 11 18223603 NM_030754 NP_110381 A/G R89H minus 23595249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.1-p14 serum amyloid A2 22483 rs2469826 KRT25C 342574 17 36192117 NM_181537 NP_853515 C/G S52T minus 3462014 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 121 "HapMap,doubleHit,freq,cluster" 17q21.2 keratin 25C 22484 rs2469887 HSPA5BP1 54972 11 60460789 NM_017870 NP_060340 A/G A970V minus 3462094 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq,cluster" 11q12.2 "heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1" 22485 rs2469887 HSPA5BP1 54972 11 60460789 NM_178031 NP_821174 A/G A969V minus 3462094 1303 SEQUENOM CEPH CEPH (92) 92 0.44 120 "by doubleHit,freq,cluster" 11q12.2 "heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1" 22486 rs2470103 MYEF2 50804 15 46230991 NM_016132 NP_057216 C/T Q426R plus 3462406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 15q15.2 myelin expression factor 2 22487 rs2472553 CHRNA2 1135 8 27384428 NM_000742 NP_000733 C/T T22I minus 14332909 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.16 121 "HapMap,doubleHit,freq,cluster" 8p21 "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)" 22488 rs2472647 PCDHGA1 56114 5 140690889 NM_018912 NP_061735 C/T V152I minus 3465509 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22489 rs2472647 PCDHGA1 56114 5 140690889 NM_018912 NP_061735 C/T V152I minus 4983435 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.2 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22490 rs2472647 PCDHGA1 56114 5 140690889 NM_018912 NP_061735 C/T V152I minus 24182103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22491 rs2472647 PCDHGA1 56114 5 140690889 NM_018912 NP_061735 C/T V152I minus 24182103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22492 rs2472647 PCDHGA1 56114 5 140690889 NM_018912 NP_061735 C/T V152I minus 24182103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22493 rs2472647 PCDHGA1 56114 5 140690889 NM_031993 NP_114382 C/T V152I minus 3465509 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22494 rs2472647 PCDHGA1 56114 5 140690889 NM_031993 NP_114382 C/T V152I minus 4983435 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.2 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22495 rs2472647 PCDHGA1 56114 5 140690889 NM_031993 NP_114382 C/T V152I minus 24182103 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22496 rs2472647 PCDHGA1 56114 5 140690889 NM_031993 NP_114382 C/T V152I minus 24182103 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22497 rs2472647 PCDHGA1 56114 5 140690889 NM_031993 NP_114382 C/T V152I minus 24182103 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 5q31 "protocadherin gamma subfamily A, 1" 22498 rs2473928 ABTB2 25841 11 34132838 NM_145804 NP_665803 A/G T732A minus 3467039 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq" 11p13 ankyrin repeat and BTB (POZ) domain containing 2 22499 rs2473928 ABTB2 25841 11 34132838 NM_145804 NP_665803 A/G T732A minus 23501259 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq" 11p13 ankyrin repeat and BTB (POZ) domain containing 2 22500 rs2473928 ABTB2 25841 11 34132838 NM_145804 NP_665803 A/G T732A minus 23501259 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq" 11p13 ankyrin repeat and BTB (POZ) domain containing 2 22501 rs2473928 ABTB2 25841 11 34132838 NM_145804 NP_665803 A/G T732A minus 23501259 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq" 11p13 ankyrin repeat and BTB (POZ) domain containing 2 22502 rs2475298 SEC23IP 11196 10 121669003 NM_007190 NP_009121 C/T K644E minus 3468863 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,freq,cluster" 10q25-q26 SEC23 interacting protein 22503 rs2475298 SEC23IP 11196 10 121669003 NM_007190 NP_009121 C/T K644E minus 24330406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,freq,cluster" 10q25-q26 SEC23 interacting protein 22504 rs2475298 SEC23IP 11196 10 121669003 NM_007190 NP_009121 C/T K644E minus 24330406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 10q25-q26 SEC23 interacting protein 22505 rs2475298 SEC23IP 11196 10 121669003 NM_007190 NP_009121 C/T K644E minus 24330406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 10q25-q26 SEC23 interacting protein 22506 rs2477120 CAP350 9857 1 176721399 NM_014810 NP_055625 C/G E945Q plus 24631473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 1p36.13-q41 centrosome-associated protein 350 22507 rs2477120 CAP350 9857 1 176721399 NM_014810 NP_055625 C/G E945Q plus 24631473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 1p36.13-q41 centrosome-associated protein 350 22508 rs2477120 CAP350 9857 1 176721399 NM_014810 NP_055625 C/G E945Q plus 24631473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 1p36.13-q41 centrosome-associated protein 350 22509 rs2479383 PSMB4 5692 1 148187098 NM_002796 NP_002787 C/T I234T plus 5004975 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.28 121 "by doubleHit,freq,cluster" 1q21 "proteasome (prosome, macropain) subunit, beta type, 4" 22510 rs2480345 GPR158 57512 10 25741347 NM_020752 NP_065803 C/G A422G minus 23466500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 10p12.31 G protein-coupled receptor 158 22511 rs2480345 GPR158 57512 10 25741347 NM_020752 NP_065803 C/G A422G minus 23466500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,submitter,freq,cluster" 10p12.31 G protein-coupled receptor 158 22512 rs2480345 GPR158 57512 10 25741347 NM_020752 NP_065803 C/G A422G minus 23466500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 10p12.31 G protein-coupled receptor 158 22513 rs2480452 PPP2R4 5524 9 128989290 NM_021131 NP_066954 A/G S322L minus 3477812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 22514 rs2480452 PPP2R4 5524 9 128989290 NM_178000 NP_821067 A/G S322L minus 3477812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 22515 rs2480452 PPP2R4 5524 9 128989290 NM_178001 NP_821068 A/G S357L minus 3477812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 22516 rs2480452 PPP2R4 5524 9 128989290 NM_178002 NP_821069 A/G S131L minus 3477812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 22517 rs2480452 PPP2R4 5524 9 128989290 NM_178003 NP_821070 A/G S280L minus 3477812 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 120 "HapMap,freq,cluster" 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 22518 rs2485319 OVGP1 5016 1 111669735 NM_002557 NP_002548 A/G M477T plus 24266746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 22519 rs2485319 OVGP1 5016 1 111669735 NM_002557 NP_002548 A/G M477T plus 24266746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 22520 rs2485319 OVGP1 5016 1 111669735 NM_002557 NP_002548 A/G M477T plus 24266746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 22521 rs2485518 FLG 2312 1 149100958 XM_048104 XP_048104 C/G K16N plus 3486155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1q21 filaggrin 22522 rs2486668 TFCP2L4 57822 1 24403369 NM_021180 NP_067003 C/G D60E minus 24616911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22523 rs2486668 TFCP2L4 57822 1 24403369 NM_021180 NP_067003 C/G D60E minus 24616911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22524 rs2486668 TFCP2L4 57822 1 24403369 NM_021180 NP_067003 C/G D60E minus 24616911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22525 rs2486668 TFCP2L4 57822 1 24403369 NM_198173 NP_937816 C/G D55E minus 24616911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22526 rs2486668 TFCP2L4 57822 1 24403369 NM_198173 NP_937816 C/G D55E minus 24616911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22527 rs2486668 TFCP2L4 57822 1 24403369 NM_198173 NP_937816 C/G D55E minus 24616911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 1p36.11 sister-of-mammalian grainyhead 22528 rs2487068 SLC29A3 55315 10 72791919 NM_018344 NP_060814 A/G I326V plus 4926459 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.36 123 "by doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 22529 rs2487068 SLC29A3 55315 10 72791919 NM_018344 NP_060814 A/G I326V plus 24104778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 22530 rs2487068 SLC29A3 55315 10 72791919 NM_018344 NP_060814 A/G I326V plus 24104778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 22531 rs2487068 SLC29A3 55315 10 72791919 NM_018344 NP_060814 A/G I326V plus 24104778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q22.2 "solute carrier family 29 (nucleoside transporters), member 3" 22532 rs2487999 OBFC1 79991 10 105649816 NM_024928 NP_079204 C/T T151A plus 23611734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q25.1 oligonucleotide/oligosaccharide-binding fold containing 1 22533 rs2487999 OBFC1 79991 10 105649816 NM_024928 NP_079204 C/T T151A plus 23611734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 10q25.1 oligonucleotide/oligosaccharide-binding fold containing 1 22534 rs2487999 OBFC1 79991 10 105649816 NM_024928 NP_079204 C/T T151A plus 23611734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q25.1 oligonucleotide/oligosaccharide-binding fold containing 1 22535 rs2491132 SDC3 9672 1 31018740 XM_375712 XP_375712 C/T V432I plus 24628612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 22536 rs2491132 SDC3 9672 1 31018740 XM_375712 XP_375712 C/T V432I plus 24628612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 22537 rs2491132 SDC3 9672 1 31018740 XM_375712 XP_375712 C/T V432I plus 24628612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 22538 rs2492216 FOXD4 2298 9 107713 NM_207305 NP_997188 C/T D136G plus 3496860 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit,cluster" 9p11-q11 forkhead box D4 22539 rs2498323 HGFAC 3083 4 3488078 NM_001528 NP_001519 C/T R644Q minus 3504677 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq" 4p16 HGF activator 22540 rs2498323 HGFAC 3083 4 3488078 NM_001528 NP_001519 C/T R644Q minus 24309742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq" 4p16 HGF activator 22541 rs2498323 HGFAC 3083 4 3488078 NM_001528 NP_001519 C/T R644Q minus 24309742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,submitter,freq" 4p16 HGF activator 22542 rs2498323 HGFAC 3083 4 3488078 NM_001528 NP_001519 C/T R644Q minus 24309742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq" 4p16 HGF activator 22543 rs2498982 INADL 10207 1 62228704 NM_005799 NP_005790 C/G V1360L minus 3505475 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 119 "HapMap,doubleHit,freq" 1p32.1 InaD-like protein 22544 rs2498982 INADL 10207 1 62228704 NM_176877 NP_795352 C/G V1360L minus 3505475 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 119 "HapMap,doubleHit,freq" 1p32.1 InaD-like protein 22545 rs2498982 INADL 10207 1 62228704 NM_176878 NP_795353 C/G V1360L minus 3505475 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 119 "HapMap,doubleHit,freq" 1p32.1 InaD-like protein 22546 rs2499836 OLFML2B 25903 1 158699339 NM_015441 NP_056256 C/T W470R minus 4924335 738 YUSUKE JBIC-ALLELE Japanese (752) 1116 0.26 123 "by doubleHit,freq,cluster" 1q23.1 olfactomedin-like 2B 22547 rs2499836 OLFML2B 25903 1 158699339 NM_015441 NP_056256 C/T W470R minus 23161602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1q23.1 olfactomedin-like 2B 22548 rs2499836 OLFML2B 25903 1 158699339 NM_015441 NP_056256 C/T W470R minus 23161602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q23.1 olfactomedin-like 2B 22549 rs2499836 OLFML2B 25903 1 158699339 NM_015441 NP_056256 C/T W470R minus 23161602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q23.1 olfactomedin-like 2B 22550 rs2499953 MMP26 56547 11 4967481 NM_021801 NP_068573 A/G K43E plus 24070406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 11p15 matrix metalloproteinase 26 22551 rs2499953 MMP26 56547 11 4967481 NM_021801 NP_068573 A/G K43E plus 24070406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 11p15 matrix metalloproteinase 26 22552 rs2499953 MMP26 56547 11 4967481 NM_021801 NP_068573 A/G K43E plus 24070406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 11p15 matrix metalloproteinase 26 22553 rs2500052 OR52E2 119678 11 5036644 XM_061610 XP_061610 A/G R264C plus 24529449 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 22554 rs2500052 OR52E2 119678 11 5036644 XM_061610 XP_061610 A/G R264C plus 24529449 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 22555 rs2500052 OR52E2 119678 11 5036644 XM_061610 XP_061610 A/G R264C plus 24529449 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 22556 rs2502601 SYNJ2 8871 6 158487717 NM_003898 NP_003889 C/T E1468G minus 24460965 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 6q25.3 synaptojanin 2 22557 rs2502601 SYNJ2 8871 6 158487717 NM_003898 NP_003889 C/T E1468G minus 24460965 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 6q25.3 synaptojanin 2 22558 rs2502601 SYNJ2 8871 6 158487717 NM_003898 NP_003889 C/T E1468G minus 24460965 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 6q25.3 synaptojanin 2 22559 rs2504779 UNQ6122 388611 1 27393162 NM_207397 NP_997280 C/T M76V plus 23687775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 1p35.3 EAPG6122 22560 rs2504779 UNQ6122 388611 1 27393162 NM_207397 NP_997280 C/T M76V plus 23687775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 1p35.3 EAPG6122 22561 rs2504779 UNQ6122 388611 1 27393162 NM_207397 NP_997280 C/T M76V plus 23687775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p35.3 EAPG6122 22562 rs2508489 NS5ATP13TP2 220323 11 119604868 NM_178507 NP_848602 A/G H210R plus 4926740 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.07 121 "by doubleHit,freq,cluster" 11q23.3 NS5ATP13TP2 protein 22563 rs2508490 NS5ATP13TP2 220323 11 119604889 NM_178507 NP_848602 A/G R217H plus 4926741 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 121 "by doubleHit,freq,cluster" 11q23.3 NS5ATP13TP2 protein 22564 rs2511188 USP35 57558 11 77598578 XM_290527 XP_290527 C/T I433V minus 3520662 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 108 "HapMap,doubleHit,freq,cluster" 11q13.4 ubiquitin specific protease 35 22565 rs2511188 USP35 57558 11 77598578 XM_290527 XP_290527 C/T I433V minus 4926678 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.46 108 "HapMap,doubleHit,freq,cluster" 11q13.4 ubiquitin specific protease 35 22566 rs2511241 P2RY2 5029 11 72622989 NM_002564 NP_002555 C/T P46L plus 3520729 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22567 rs2511241 P2RY2 5029 11 72622989 NM_002564 NP_002555 C/T P46L plus 4927159 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22568 rs2511241 P2RY2 5029 11 72622989 NM_002564 NP_002555 C/T P46L plus 23973762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22569 rs2511241 P2RY2 5029 11 72622989 NM_002564 NP_002555 C/T P46L plus 23973762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22570 rs2511241 P2RY2 5029 11 72622989 NM_002564 NP_002555 C/T P46L plus 23973762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22571 rs2511241 P2RY2 5029 11 72622989 NM_176071 NP_788085 C/T P46L plus 3520729 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22572 rs2511241 P2RY2 5029 11 72622989 NM_176071 NP_788085 C/T P46L plus 4927159 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22573 rs2511241 P2RY2 5029 11 72622989 NM_176071 NP_788085 C/T P46L plus 23973762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22574 rs2511241 P2RY2 5029 11 72622989 NM_176071 NP_788085 C/T P46L plus 23973762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22575 rs2511241 P2RY2 5029 11 72622989 NM_176071 NP_788085 C/T P46L plus 23973762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22576 rs2511241 P2RY2 5029 11 72622989 NM_176072 NP_788086 C/T P46L plus 3520729 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22577 rs2511241 P2RY2 5029 11 72622989 NM_176072 NP_788086 C/T P46L plus 4927159 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22578 rs2511241 P2RY2 5029 11 72622989 NM_176072 NP_788086 C/T P46L plus 23973762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22579 rs2511241 P2RY2 5029 11 72622989 NM_176072 NP_788086 C/T P46L plus 23973762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22580 rs2511241 P2RY2 5029 11 72622989 NM_176072 NP_788086 C/T P46L plus 23973762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 11q13.5-q14.1 "purinergic receptor P2Y, G-protein coupled, 2" 22581 rs2512219 OR8D2 283160 11 123694939 XM_208541 XP_208541 A/G R122H minus 3521968 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 2" 22582 rs2512219 OR8D2 283160 11 123694939 XM_208541 XP_208541 A/G R122H minus 23589245 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 2" 22583 rs2512219 OR8D2 283160 11 123694939 XM_208541 XP_208541 A/G R122H minus 23589245 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 2" 22584 rs2512219 OR8D2 283160 11 123694939 XM_208541 XP_208541 A/G R122H minus 23589245 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 2" 22585 rs2512938 OR8J3 219453 11 55684167 XM_166813 XP_166813 A/G F68S plus 3522842 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 "HapMap,doubleHit" 11q12.1 "olfactory receptor, family 8, subfamily J, member 3" 22586 rs2521998 NUCB2 4925 11 17290239 NM_005013 NP_005004 C/T S303N minus 10682714 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 11p15.1-p14 nucleobindin 2 22587 rs2522833 PCLO 27445 7 82098359 XM_168530 XP_168530 A/C S3630A plus 24521489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 22588 rs2522833 PCLO 27445 7 82098359 XM_168530 XP_168530 A/C S3630A plus 24521489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 22589 rs2522833 PCLO 27445 7 82098359 XM_168530 XP_168530 A/C S3630A plus 24521489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 22590 rs2522943 CYLN2 7461 7 73259400 NM_003388 NP_003379 C/G R977P plus 24463841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22591 rs2522943 CYLN2 7461 7 73259400 NM_003388 NP_003379 C/G R977P plus 24463841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22592 rs2522943 CYLN2 7461 7 73259400 NM_003388 NP_003379 C/G R977P plus 24463841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22593 rs2522943 CYLN2 7461 7 73259400 NM_032421 NP_115797 C/G R942P plus 24463841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22594 rs2522943 CYLN2 7461 7 73259400 NM_032421 NP_115797 C/G R942P plus 24463841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22595 rs2522943 CYLN2 7461 7 73259400 NM_032421 NP_115797 C/G R942P plus 24463841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q11.23 cytoplasmic linker 2 22596 rs2523989 TRIM31 11074 6 30186254 NM_007028 NP_008959 A/G V232I minus 12682860 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22597 rs2523989 TRIM31 11074 6 30186254 NM_007028 NP_008959 A/G V232I minus 24346515 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22598 rs2523989 TRIM31 11074 6 30186254 NM_007028 NP_008959 A/G V232I minus 24346515 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22599 rs2523989 TRIM31 11074 6 30186254 NM_007028 NP_008959 A/G V232I minus 24346515 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22600 rs2523989 TRIM31 11074 6 30186254 NM_052816 NP_438111 A/G V232I minus 12682860 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22601 rs2523989 TRIM31 11074 6 30186254 NM_052816 NP_438111 A/G V232I minus 24346515 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22602 rs2523989 TRIM31 11074 6 30186254 NM_052816 NP_438111 A/G V232I minus 24346515 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22603 rs2523989 TRIM31 11074 6 30186254 NM_052816 NP_438111 A/G V232I minus 24346515 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 6p21.3 tripartite motif-containing 31 22604 rs2524383 EMR2 30817 19 14723430 NM_013447 NP_038475 C/G L614F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22605 rs2524383 EMR2 30817 19 14723430 NM_013447 NP_038475 C/G L614F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22606 rs2524383 EMR2 30817 19 14723430 NM_013447 NP_038475 C/G L614F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22607 rs2524383 EMR2 30817 19 14723430 NM_013447 NP_038475 C/G L614F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22608 rs2524383 EMR2 30817 19 14723430 NM_013447 NP_038475 C/G L614F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22609 rs2524383 EMR2 30817 19 14723430 NM_152916 NP_690880 C/G L565F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22610 rs2524383 EMR2 30817 19 14723430 NM_152916 NP_690880 C/G L565F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22611 rs2524383 EMR2 30817 19 14723430 NM_152916 NP_690880 C/G L565F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22612 rs2524383 EMR2 30817 19 14723430 NM_152916 NP_690880 C/G L565F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22613 rs2524383 EMR2 30817 19 14723430 NM_152916 NP_690880 C/G L565F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22614 rs2524383 EMR2 30817 19 14723430 NM_152917 NP_690881 C/G L521F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22615 rs2524383 EMR2 30817 19 14723430 NM_152917 NP_690881 C/G L521F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22616 rs2524383 EMR2 30817 19 14723430 NM_152917 NP_690881 C/G L521F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22617 rs2524383 EMR2 30817 19 14723430 NM_152917 NP_690881 C/G L521F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22618 rs2524383 EMR2 30817 19 14723430 NM_152917 NP_690881 C/G L521F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22619 rs2524383 EMR2 30817 19 14723430 NM_152918 NP_690882 C/G L472F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22620 rs2524383 EMR2 30817 19 14723430 NM_152918 NP_690882 C/G L472F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22621 rs2524383 EMR2 30817 19 14723430 NM_152918 NP_690882 C/G L472F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22622 rs2524383 EMR2 30817 19 14723430 NM_152918 NP_690882 C/G L472F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22623 rs2524383 EMR2 30817 19 14723430 NM_152918 NP_690882 C/G L472F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22624 rs2524383 EMR2 30817 19 14723430 NM_152919 NP_690883 C/G L603F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22625 rs2524383 EMR2 30817 19 14723430 NM_152919 NP_690883 C/G L603F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22626 rs2524383 EMR2 30817 19 14723430 NM_152919 NP_690883 C/G L603F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22627 rs2524383 EMR2 30817 19 14723430 NM_152919 NP_690883 C/G L603F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22628 rs2524383 EMR2 30817 19 14723430 NM_152919 NP_690883 C/G L603F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22629 rs2524383 EMR2 30817 19 14723430 NM_152920 NP_690884 C/G L554F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22630 rs2524383 EMR2 30817 19 14723430 NM_152920 NP_690884 C/G L554F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22631 rs2524383 EMR2 30817 19 14723430 NM_152920 NP_690884 C/G L554F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22632 rs2524383 EMR2 30817 19 14723430 NM_152920 NP_690884 C/G L554F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22633 rs2524383 EMR2 30817 19 14723430 NM_152920 NP_690884 C/G L554F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22634 rs2524383 EMR2 30817 19 14723430 NM_152921 NP_690885 C/G L510F plus 3538404 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22635 rs2524383 EMR2 30817 19 14723430 NM_152921 NP_690885 C/G L510F plus 4938216 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22636 rs2524383 EMR2 30817 19 14723430 NM_152921 NP_690885 C/G L510F plus 24422684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22637 rs2524383 EMR2 30817 19 14723430 NM_152921 NP_690885 C/G L510F plus 24422684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22638 rs2524383 EMR2 30817 19 14723430 NM_152921 NP_690885 C/G L510F plus 24422684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 22639 rs2526247 SLC27A6 28965 5 128329784 NM_014031 NP_054750 G/T L19V plus 4920160 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.1 121 "by doubleHit,freq,cluster" 5q31.1 "solute carrier family 27 (fatty acid transporter), member 6" 22640 rs2528693 LAMB4 22798 7 107265358 NM_007356 NP_031382 C/G R1612S plus 23294511 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 22641 rs2528693 LAMB4 22798 7 107265358 NM_007356 NP_031382 C/G R1612S plus 23294511 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 22642 rs2528693 LAMB4 22798 7 107265358 NM_007356 NP_031382 C/G R1612S plus 23294511 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 22643 rs2532500 TAPBPL 55080 12 6433071 NM_018009 NP_060479 C/T T165A minus 23782900 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22644 rs2532500 TAPBPL 55080 12 6433071 NM_018009 NP_060479 C/T T165A minus 23782900 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22645 rs2532500 TAPBPL 55080 12 6433071 NM_018009 NP_060479 C/T T165A minus 23782900 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22646 rs2532501 TAPBPL 55080 12 6433014 NM_018009 NP_060479 C/T M146V minus 16340833 693 EGP_SNPS PDR90 NIHPDR 144 0.37 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22647 rs2532501 TAPBPL 55080 12 6433014 NM_018009 NP_060479 C/T M146V minus 23782898 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22648 rs2532501 TAPBPL 55080 12 6433014 NM_018009 NP_060479 C/T M146V minus 23782898 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22649 rs2532501 TAPBPL 55080 12 6433014 NM_018009 NP_060479 C/T M146V minus 23782898 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 12p13.31 TAP binding protein-like 22650 rs2532753 LYZL1 84569 10 29618090 NM_032517 NP_115906 C/T K13R minus 4922976 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 123 "by cluster,freq" 10p12.1 lysozyme-like 1 22651 rs2536512 SOD3 6649 4 24477584 NM_003102 NP_003093 A/G A58T plus 22887836 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 121 "HapMap,doubleHit,freq,cluster" 4p16.3-q21 "superoxide dismutase 3, extracellular" 22652 rs2543519 TMPRSS6 164656 22 35804769 NM_153019 NP_694564 C/T I430T minus 8296222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,doubleHit,freq,cluster" 22q13.1 "transmembrane protease, serine 6" 22653 rs2544600 ZFYVE16 9765 5 79768835 NM_014733 NP_055548 C/T I192T plus 3568149 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,doubleHit,freq,cluster" 5p15.2-q14.3 "zinc finger, FYVE domain containing 16" 22654 rs2544809 DBN1 1627 5 176818105 NM_004395 NP_004386 C/T I446V plus 3568518 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 121 "HapMap,doubleHit,freq,cluster" 5q35.3 drebrin 1 22655 rs2544809 DBN1 1627 5 176818105 NM_004395 NP_004386 C/T I446V plus 3568518 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "HapMap,doubleHit,freq,cluster" 5q35.3 drebrin 1 22656 rs2544809 DBN1 1627 5 176818105 NM_080881 NP_543157 C/T I448V plus 3568518 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 121 "HapMap,doubleHit,freq,cluster" 5q35.3 drebrin 1 22657 rs2544809 DBN1 1627 5 176818105 NM_080881 NP_543157 C/T I448V plus 3568518 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "HapMap,doubleHit,freq,cluster" 5q35.3 drebrin 1 22658 rs2546423 OR2V2 285659 5 180515210 NM_206880 NP_996763 C/T H221R minus 3571617 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,submitter,freq,cluster" 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 22659 rs2546423 OR2V2 285659 5 180515210 NM_206880 NP_996763 C/T H221R minus 24679326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 22660 rs2546423 OR2V2 285659 5 180515210 NM_206880 NP_996763 C/T H221R minus 24679326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,submitter,freq,cluster" 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 22661 rs2546423 OR2V2 285659 5 180515210 NM_206880 NP_996763 C/T H221R minus 24679326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,submitter,freq,cluster" 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 22662 rs2549677 PKD1 5310 16 2102362 NM_000296 NP_000287 C/T M1092T minus 24810571 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 "by cluster,freq" 16p13.3 polycystic kidney disease 1 (autosomal dominant) 22663 rs2549782 LRAP 64167 5 96256756 NM_022350 NP_071745 G/T K392N plus 3578128 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 16 leukocyte-derived arginine aminopeptidase 22664 rs2549782 LRAP 64167 5 96256756 NM_022350 NP_071745 G/T K392N plus 4920010 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.47 123 "HapMap,doubleHit,submitter,freq,cluster" 16 leukocyte-derived arginine aminopeptidase 22665 rs2549782 LRAP 64167 5 96256756 NM_022350 NP_071745 G/T K392N plus 24450022 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 16 leukocyte-derived arginine aminopeptidase 22666 rs2549782 LRAP 64167 5 96256756 NM_022350 NP_071745 G/T K392N plus 24450022 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 16 leukocyte-derived arginine aminopeptidase 22667 rs2549782 LRAP 64167 5 96256756 NM_022350 NP_071745 G/T K392N plus 24450022 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 16 leukocyte-derived arginine aminopeptidase 22668 rs2550232 MUC20 200958 3 196942383 NM_152673 NP_689886 C/T T271I plus 3578704 1303 SEQUENOM CEPH CEPH (92) 92 0.36 119 "by doubleHit,freq,cluster" 3q29 mucin 20 22669 rs2550401 OR1F2 26184 16 3206072 XM_370931 XP_370931 A/G N121S plus 3578944 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 2" 22670 rs2550401 OR1F2 26184 16 3206072 XM_370931 XP_370931 A/G N121S plus 4929938 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 2" 22671 rs2550401 OR1F2 26184 16 3206072 XM_370931 XP_370931 A/G N121S plus 24028620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 2" 22672 rs2550401 OR1F2 26184 16 3206072 XM_370931 XP_370931 A/G N121S plus 24028620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 2" 22673 rs2550401 OR1F2 26184 16 3206072 XM_370931 XP_370931 A/G N121S plus 24028620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 16p13.3 "olfactory receptor, family 1, subfamily F, member 2" 22674 rs2551346 KBTBD9 114818 2 23823603 XM_496546 XP_496546 A/T V5142D plus 3580499 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 108 "HapMap,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 22675 rs2567241 CLGN 1047 4 141680767 NM_004362 NP_004353 A/C A160S plus 23422354 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq,cluster" 4q28.3-q31.1 calmegin 22676 rs2567241 CLGN 1047 4 141680767 NM_004362 NP_004353 A/C A160S plus 23422354 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 4q28.3-q31.1 calmegin 22677 rs2567241 CLGN 1047 4 141680767 NM_004362 NP_004353 A/C A160S plus 23422354 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 4q28.3-q31.1 calmegin 22678 rs2567705 COL27A1 85301 9 114011220 NM_032888 NP_116277 A/T I611F minus 3604872 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22679 rs2567705 COL27A1 85301 9 114011220 NM_032888 NP_116277 A/T I611F minus 24510011 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22680 rs2567705 COL27A1 85301 9 114011220 NM_032888 NP_116277 A/T I611F minus 24510011 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22681 rs2567705 COL27A1 85301 9 114011220 NM_032888 NP_116277 A/T I611F minus 24510011 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22682 rs2567706 COL27A1 85301 9 114009748 NM_032888 NP_116277 C/T Q120R minus 24509988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq" 9q33.1 "collagen, type XXVII, alpha 1" 22683 rs2567706 COL27A1 85301 9 114009748 NM_032888 NP_116277 C/T Q120R minus 24509988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq" 9q33.1 "collagen, type XXVII, alpha 1" 22684 rs2567706 COL27A1 85301 9 114009748 NM_032888 NP_116277 C/T Q120R minus 24509988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 9q33.1 "collagen, type XXVII, alpha 1" 22685 rs2567707 COL27A1 85301 9 114009654 NM_032888 NP_116277 C/T V89I minus 24509979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22686 rs2567707 COL27A1 85301 9 114009654 NM_032888 NP_116277 C/T V89I minus 24509979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.15 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22687 rs2567707 COL27A1 85301 9 114009654 NM_032888 NP_116277 C/T V89I minus 24509979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 22688 rs2571445 TNS 7145 2 218508660 NM_022648 NP_072174 C/T W1197R minus 24298199 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by cluster,freq" 2q35-q36 tensin 22689 rs2571445 TNS 7145 2 218508660 NM_022648 NP_072174 C/T W1197R minus 24298199 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.26 123 "by cluster,freq" 2q35-q36 tensin 22690 rs2571445 TNS 7145 2 218508660 NM_022648 NP_072174 C/T W1197R minus 24298199 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by cluster,freq" 2q35-q36 tensin 22691 rs2573652 ADAMTS17 170691 15 98332137 NM_139057 NP_620688 C/T N1094S plus 3614339 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 121 "HapMap,doubleHit,freq,cluster" 15q24 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17" 22692 rs2573652 ADAMTS17 170691 15 98332137 NM_139057 NP_620688 C/T N1094S plus 4989804 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1480 0.5 121 "HapMap,doubleHit,freq,cluster" 15q24 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17" 22693 rs2578652 GANC 2595 15 40405823 NM_198141 NP_937784 A/T D443E minus 3622463 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 100 "HapMap,freq" 15q15.2 "glucosidase, alpha; neutral C" 22694 rs2584625 FTSJ3 117246 17 59257177 NM_017647 NP_060117 C/G Q91E minus 3632063 1303 SEQUENOM CEPH CEPH (92) 92 0.39 123 "by doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22695 rs2584625 FTSJ3 117246 17 59257177 NM_017647 NP_060117 C/G Q91E minus 24571240 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.43 123 "by doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22696 rs2584625 FTSJ3 117246 17 59257177 NM_017647 NP_060117 C/G Q91E minus 24571240 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22697 rs2584625 FTSJ3 117246 17 59257177 NM_017647 NP_060117 C/G Q91E minus 24571240 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22698 rs2593943 MORC 27136 3 110172911 NM_014429 NP_055244 A/G H836Y plus 24375946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 22699 rs2593943 MORC 27136 3 110172911 NM_014429 NP_055244 A/G H836Y plus 24375946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 22700 rs2593943 MORC 27136 3 110172911 NM_014429 NP_055244 A/G H836Y plus 24375946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 22701 rs2602141 TP53BP1 7158 15 41511938 NM_005657 NP_005648 G/T K1136Q plus 23963734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 22702 rs2602141 TP53BP1 7158 15 41511938 NM_005657 NP_005648 G/T K1136Q plus 23963734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 22703 rs2602141 TP53BP1 7158 15 41511938 NM_005657 NP_005648 G/T K1136Q plus 23963734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 15q15-q21 "tumor protein p53 binding protein, 1" 22704 rs2604953 KRTHA2 3882 17 36869956 NM_002278 NP_002269 G/T P427T plus 3664992 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.07 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 22705 rs2604953 KRTHA2 3882 17 36869956 NM_002278 NP_002269 G/T P427T plus 4996286 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 746 0.2 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 22706 rs2604953 KRTHA2 3882 17 36869956 NM_002278 NP_002269 G/T P427T plus 24098546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 22707 rs2604953 KRTHA2 3882 17 36869956 NM_002278 NP_002269 G/T P427T plus 24098546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 22708 rs2604953 KRTHA2 3882 17 36869956 NM_002278 NP_002269 G/T P427T plus 24098546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17q12-q21 "keratin, hair, acidic, 2" 22709 rs2608009 KRT7 3855 12 50925569 NM_005556 NP_005547 C/G G364A plus 4927729 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.09 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 7 22710 rs2608009 KRT7 3855 12 50925569 NM_005556 NP_005547 C/G G364A plus 16596101 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 7 22711 rs2608009 KRT7 3855 12 50925569 NM_005556 NP_005547 C/G G364A plus 24342109 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 7 22712 rs2608009 KRT7 3855 12 50925569 NM_005556 NP_005547 C/G G364A plus 24342109 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 7 22713 rs2608009 KRT7 3855 12 50925569 NM_005556 NP_005547 C/G G364A plus 24342109 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 12q12-q13 keratin 7 22714 rs2609428 ENAM 10117 4 71873904 NM_031889 NP_114095 C/T F576L plus 23360006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 4q21.1 enamelin 22715 rs2609428 ENAM 10117 4 71873904 NM_031889 NP_114095 C/T F576L plus 23360006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq,cluster" 4q21.1 enamelin 22716 rs2609428 ENAM 10117 4 71873904 NM_031889 NP_114095 C/T F576L plus 23360006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 4q21.1 enamelin 22717 rs2609881 ZNF228 7771 19 49523829 NM_013380 NP_037512 A/C E774A minus 23765582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2 zinc finger protein 228 22718 rs2609881 ZNF228 7771 19 49523829 NM_013380 NP_037512 A/C E774A minus 23765582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 19q13.2 zinc finger protein 228 22719 rs2609881 ZNF228 7771 19 49523829 NM_013380 NP_037512 A/C E774A minus 23765582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 19q13.2 zinc finger protein 228 22720 rs2614668 AKAP13 11214 15 84088871 NM_006738 NP_006729 C/T A2805T minus 23945008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22721 rs2614668 AKAP13 11214 15 84088871 NM_006738 NP_006729 C/T A2805T minus 23945008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22722 rs2614668 AKAP13 11214 15 84088871 NM_006738 NP_006729 C/T A2805T minus 23945008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22723 rs2614668 AKAP13 11214 15 84088871 NM_007200 NP_009131 C/T A2801T minus 23945008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22724 rs2614668 AKAP13 11214 15 84088871 NM_007200 NP_009131 C/T A2801T minus 23945008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22725 rs2614668 AKAP13 11214 15 84088871 NM_007200 NP_009131 C/T A2801T minus 23945008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22726 rs2614668 AKAP13 11214 15 84088871 NM_144767 NP_658913 C/T A1046T minus 23945008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22727 rs2614668 AKAP13 11214 15 84088871 NM_144767 NP_658913 C/T A1046T minus 23945008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22728 rs2614668 AKAP13 11214 15 84088871 NM_144767 NP_658913 C/T A1046T minus 23945008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by submitter,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 22729 rs2617170 KLRC4 8302 12 10452224 NM_013431 NP_038459 C/T N104S plus 23787339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 22730 rs2617170 KLRC4 8302 12 10452224 NM_013431 NP_038459 C/T N104S plus 23787339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 22731 rs2617170 KLRC4 8302 12 10452224 NM_013431 NP_038459 C/T N104S plus 23787339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 12p13.2-p12.3 "killer cell lectin-like receptor subfamily C, member 4" 22732 rs2617969 ODZ2 57451 5 167464129 XM_047995 XP_047995 A/G R830Q plus 23891258 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 22733 rs2617969 ODZ2 57451 5 167464129 XM_047995 XP_047995 A/G R830Q plus 23891258 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 22734 rs2617969 ODZ2 57451 5 167464129 XM_047995 XP_047995 A/G R830Q plus 23891258 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 22735 rs2621330 HLA-DOB 3112 6 32889502 NM_002120 NP_002111 A/G V244I minus 23718026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 22736 rs2621330 HLA-DOB 3112 6 32889502 NM_002120 NP_002111 A/G V244I minus 23718026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 22737 rs2621330 HLA-DOB 3112 6 32889502 NM_002120 NP_002111 A/G V244I minus 23718026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DO beta" 22738 rs2625962 PLXND1 23129 3 130775881 NM_015103 NP_055918 A/G H894R minus 23280372 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q21.3 plexin D1 22739 rs2625962 PLXND1 23129 3 130775881 NM_015103 NP_055918 A/G H894R minus 23280372 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q21.3 plexin D1 22740 rs2625962 PLXND1 23129 3 130775881 NM_015103 NP_055918 A/G H894R minus 23280372 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q21.3 plexin D1 22741 rs2628035 PPM1H 57460 12 61614591 XM_350880 XP_350881 C/T I65V plus 3701080 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 HapMap 12q14.1 protein phosphatase 1H (PP2C domain containing) 22742 rs2636889 ORM2 5005 9 114172664 NM_000608 NP_000599 C/T V99A plus 3714171 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 9q32 orosomucoid 2 22743 rs2638290 TIMELESS 8914 12 55100873 NM_003920 NP_003911 C/G E1034Q plus 3716717 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 12q12-q13 timeless homolog (Drosophila) 22744 rs2640779 SLAC2-B 23086 11 107886457 NM_015065 NP_055880 A/G G1663R minus 24112528 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 22745 rs2640779 SLAC2-B 23086 11 107886457 NM_015065 NP_055880 A/G G1663R minus 24112528 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 22746 rs2640779 SLAC2-B 23086 11 107886457 NM_015065 NP_055880 A/G G1663R minus 24112528 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 22747 rs2640785 SLAC2-B 23086 11 107914994 NM_015065 NP_055880 A/T E137V plus 3720730 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,submitter,freq,cluster" 11q23.1 SLAC2-B 22748 rs2640785 SLAC2-B 23086 11 107914994 NM_015065 NP_055880 A/T E137V plus 4927051 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.42 123 "HapMap,submitter,freq,cluster" 11q23.1 SLAC2-B 22749 rs2640785 SLAC2-B 23086 11 107914994 NM_015065 NP_055880 A/T E137V plus 24112741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq,cluster" 11q23.1 SLAC2-B 22750 rs2640785 SLAC2-B 23086 11 107914994 NM_015065 NP_055880 A/T E137V plus 24112741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq,cluster" 11q23.1 SLAC2-B 22751 rs2640785 SLAC2-B 23086 11 107914994 NM_015065 NP_055880 A/T E137V plus 24112741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,submitter,freq,cluster" 11q23.1 SLAC2-B 22752 rs2640905 PER3 8863 1 7830142 NM_016831 NP_058515 C/G S1081C minus 3720879 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1p36.23 period homolog 3 (Drosophila) 22753 rs2640909 PER3 8863 1 7824383 NM_016831 NP_058515 C/T M1028T plus 24238315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by submitter,freq" 1p36.23 period homolog 3 (Drosophila) 22754 rs2640909 PER3 8863 1 7824383 NM_016831 NP_058515 C/T M1028T plus 24238315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.18 123 "by submitter,freq" 1p36.23 period homolog 3 (Drosophila) 22755 rs2640909 PER3 8863 1 7824383 NM_016831 NP_058515 C/T M1028T plus 24238315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by submitter,freq" 1p36.23 period homolog 3 (Drosophila) 22756 rs2641348 ADAM30 11085 1 120149926 NM_021794 NP_068566 C/T L359P minus 3721433 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,submitter,freq,cluster" 1p13-p11 a disintegrin and metalloproteinase domain 30 22757 rs2641348 ADAM30 11085 1 120149926 NM_021794 NP_068566 C/T L359P minus 23668861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,submitter,freq,cluster" 1p13-p11 a disintegrin and metalloproteinase domain 30 22758 rs2641348 ADAM30 11085 1 120149926 NM_021794 NP_068566 C/T L359P minus 23668861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 1p13-p11 a disintegrin and metalloproteinase domain 30 22759 rs2641348 ADAM30 11085 1 120149926 NM_021794 NP_068566 C/T L359P minus 23668861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 1p13-p11 a disintegrin and metalloproteinase domain 30 22760 rs2641962 CSMD2 114784 1 33707307 NM_052896 NP_443128 C/T M2554V plus 3722429 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 1p34.3 CUB and Sushi multiple domains 2 22761 rs2652098 CSPG2 1462 5 82843828 NM_004385 NP_004376 A/G S300L minus 3739291 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 22762 rs2652098 CSPG2 1462 5 82843828 NM_004385 NP_004376 A/G S300L minus 4920093 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.12 123 "HapMap,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 22763 rs2652098 CSPG2 1462 5 82843828 NM_004385 NP_004376 A/G S300L minus 23989856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 22764 rs2652098 CSPG2 1462 5 82843828 NM_004385 NP_004376 A/G S300L minus 23989856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 22765 rs2652098 CSPG2 1462 5 82843828 NM_004385 NP_004376 A/G S300L minus 23989856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,submitter,freq,cluster" 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 22766 rs2653349 HCRTR2 3062 6 55250296 NM_001526 NP_001517 A/G I308V plus 24690340 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by doubleHit,submitter,freq,cluster" 6p11-q11 hypocretin (orexin) receptor 2 22767 rs2653349 HCRTR2 3062 6 55250296 NM_001526 NP_001517 A/G I308V plus 24690340 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by doubleHit,submitter,freq,cluster" 6p11-q11 hypocretin (orexin) receptor 2 22768 rs2653349 HCRTR2 3062 6 55250296 NM_001526 NP_001517 A/G I308V plus 24690340 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by doubleHit,submitter,freq,cluster" 6p11-q11 hypocretin (orexin) receptor 2 22769 rs2653406 FGL1 2267 8 17776241 NM_004467 NP_004458 C/T P105L minus 23736023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22770 rs2653406 FGL1 2267 8 17776241 NM_004467 NP_004458 C/T P105L minus 23736023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22771 rs2653406 FGL1 2267 8 17776241 NM_004467 NP_004458 C/T P105L minus 23736023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22772 rs2653406 FGL1 2267 8 17776241 NM_147203 NP_671736 C/T P105L minus 23736023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22773 rs2653406 FGL1 2267 8 17776241 NM_147203 NP_671736 C/T P105L minus 23736023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22774 rs2653406 FGL1 2267 8 17776241 NM_147203 NP_671736 C/T P105L minus 23736023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22775 rs2653406 FGL1 2267 8 17776241 NM_201552 NP_963846 C/T P105L minus 23736023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22776 rs2653406 FGL1 2267 8 17776241 NM_201552 NP_963846 C/T P105L minus 23736023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22777 rs2653406 FGL1 2267 8 17776241 NM_201552 NP_963846 C/T P105L minus 23736023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22778 rs2653406 FGL1 2267 8 17776241 NM_201553 NP_963847 C/T P105L minus 23736023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22779 rs2653406 FGL1 2267 8 17776241 NM_201553 NP_963847 C/T P105L minus 23736023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22780 rs2653406 FGL1 2267 8 17776241 NM_201553 NP_963847 C/T P105L minus 23736023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p22-p21.3 fibrinogen-like 1 22781 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22782 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 901 AFFY AfAm 12 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22783 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 902 AFFY Caucasian 18 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22784 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 903 AFFY Asian 8 0.25 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22785 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 904 AFFY CEPH 10 0.1 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22786 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 3747574 905 AFFY PDpanel 44 0.34 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22787 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 24066476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22788 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 24066476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22789 rs2657167 OR52M1 119772 11 4523911 XM_061674 XP_061674 C/G S305R minus 24066476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily M, member 1" 22790 rs2657879 GLS2 27165 12 55151605 NM_013267 NP_037399 C/T L581P minus 24456482 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,submitter,freq" 12q13 "glutaminase 2 (liver, mitochondrial)" 22791 rs2657879 GLS2 27165 12 55151605 NM_013267 NP_037399 C/T L581P minus 24456482 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq" 12q13 "glutaminase 2 (liver, mitochondrial)" 22792 rs2657879 GLS2 27165 12 55151605 NM_013267 NP_037399 C/T L581P minus 24456482 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq" 12q13 "glutaminase 2 (liver, mitochondrial)" 22793 rs2658658 KRTHB2 3888 12 51075195 NM_033033 NP_149022 A/G T458M plus 3749882 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 2" 22794 rs2658658 KRTHB2 3888 12 51075195 NM_033033 NP_149022 A/G T458M plus 4927739 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 2" 22795 rs2658658 KRTHB2 3888 12 51075195 NM_033033 NP_149022 A/G T458M plus 24385953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 2" 22796 rs2658658 KRTHB2 3888 12 51075195 NM_033033 NP_149022 A/G T458M plus 24385953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 2" 22797 rs2658658 KRTHB2 3888 12 51075195 NM_033033 NP_149022 A/G T458M plus 24385953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13 "keratin, hair, basic, 2" 22798 rs2659015 AZI1 22994 17 76787779 XM_045581 XP_045581 A/G T465A minus 23640141 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 22799 rs2659015 AZI1 22994 17 76787779 XM_045581 XP_045581 A/G T465A minus 23640141 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 22800 rs2659015 AZI1 22994 17 76787779 XM_045581 XP_045581 A/G T465A minus 23640141 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 17q25.3 likely ortholog of mouse 5-azacytidine induced gene 1 22801 rs2660744 PPAT 5471 4 57102538 NM_002703 NP_002694 A/G Q488X plus 2199804 771 TSC-CSHL SC_12_A CORIELL Asian (12) 22 0.45 113 by freq 4q12 phosphoribosyl pyrophosphate amidotransferase 22802 rs2660744 PPAT 5471 4 57102538 NM_002703 NP_002694 A/G Q488X plus 2199804 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.38 113 by freq 4q12 phosphoribosyl pyrophosphate amidotransferase 22803 rs2660744 PPAT 5471 4 57102538 NM_002703 NP_002694 A/G Q488X plus 2199804 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 0.43 113 by freq 4q12 phosphoribosyl pyrophosphate amidotransferase 22804 rs2660744 PPAT 5471 4 57102538 NM_002703 NP_002694 A/G Q488X plus 2199804 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 90 0.46 113 by freq 4q12 phosphoribosyl pyrophosphate amidotransferase 22805 rs2660744 PPAT 5471 4 57102538 NM_002703 NP_002694 A/G Q488X plus 2199804 1303 SEQUENOM CEPH CEPH (92) 92 0.36 113 by freq 4q12 phosphoribosyl pyrophosphate amidotransferase 22806 rs2661488 PKHD1 5314 6 51599825 NM_138694 NP_619639 A/T I3905N plus 23771062 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 22807 rs2661488 PKHD1 5314 6 51599825 NM_138694 NP_619639 A/T I3905N plus 23771062 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 22808 rs2661488 PKHD1 5314 6 51599825 NM_138694 NP_619639 A/T I3905N plus 23771062 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 22809 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 3758674 686 TSC-SANGER SC_12_A CORIELL African American (12) 12 0.3 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22810 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 3758674 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 14 0.39 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22811 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 5112470 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 34 0.41 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22812 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 5112470 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.43 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22813 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 8338714 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22814 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 16338512 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.47 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22815 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 23574543 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22816 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 23574543 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22817 rs2664538 MMP9 4318 20 44073632 NM_004994 NP_004985 A/G Q279R plus 23574543 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 22818 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 3758733 687 TSC-SANGER SC_12_CA CEPH Caucasians (12) 4 0.09 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22819 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 3758733 688 TSC-SANGER SC_12_AA CORIELL Asian (12) 2 0.06 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22820 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 3758733 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22821 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 24539452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22822 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 24539452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22823 rs2664581 PI3 5266 20 43237936 NM_002638 NP_002629 A/C T34P plus 24539452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq" 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 22824 rs2672785 MUC5B 4587 11 1203517 XM_039877 XP_039877 C/T E34G minus 3771887 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,freq" 11p15 "mucin 5, subtype B, tracheobronchial" 22825 rs2677879 METTL4 64863 18 2537500 NM_022840 NP_073751 A/C Q310K minus 3779548 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,submitter,freq,cluster" 18p11.31 methyltransferase like 4 22826 rs2677879 METTL4 64863 18 2537500 NM_022840 NP_073751 A/C Q310K minus 24468464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 18p11.31 methyltransferase like 4 22827 rs2677879 METTL4 64863 18 2537500 NM_022840 NP_073751 A/C Q310K minus 24468464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 18p11.31 methyltransferase like 4 22828 rs2677879 METTL4 64863 18 2537500 NM_022840 NP_073751 A/C Q310K minus 24468464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 18p11.31 methyltransferase like 4 22829 rs2680704 BZRAP1 9256 17 53743237 NM_004758 NP_004749 C/G A1140P plus 3783866 1303 SEQUENOM CEPH CEPH (92) 92 0.28 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 22830 rs2680704 BZRAP1 9256 17 53743237 NM_004758 NP_004749 C/G A1140P plus 4930108 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.2 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 22831 rs2680704 BZRAP1 9256 17 53743237 NM_004758 NP_004749 C/G A1140P plus 23791876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 22832 rs2680704 BZRAP1 9256 17 53743237 NM_004758 NP_004749 C/G A1140P plus 23791876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 22833 rs2680704 BZRAP1 9256 17 53743237 NM_004758 NP_004749 C/G A1140P plus 23791876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 22834 rs2681417 CD86 942 3 123307887 NM_006889 NP_008820 A/G V179I plus 12675335 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.14 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22835 rs2681417 CD86 942 3 123307887 NM_006889 NP_008820 A/G V179I plus 12675335 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.03 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22836 rs2681417 CD86 942 3 123307887 NM_006889 NP_008820 A/G V179I plus 12675335 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22837 rs2681417 CD86 942 3 123307887 NM_006889 NP_008820 A/G V179I plus 12675335 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22838 rs2681417 CD86 942 3 123307887 NM_006889 NP_008820 A/G V179I plus 12675335 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22839 rs2681417 CD86 942 3 123307887 NM_175862 NP_787058 A/G V185I plus 12675335 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.14 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22840 rs2681417 CD86 942 3 123307887 NM_175862 NP_787058 A/G V185I plus 12675335 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.03 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22841 rs2681417 CD86 942 3 123307887 NM_175862 NP_787058 A/G V185I plus 12675335 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22842 rs2681417 CD86 942 3 123307887 NM_175862 NP_787058 A/G V185I plus 12675335 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22843 rs2681417 CD86 942 3 123307887 NM_175862 NP_787058 A/G V185I plus 12675335 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by doubleHit,freq,cluster" 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 22844 rs2682484 KLRA1 10748 12 10639670 NM_006611 NP_006602 A/T F110Y plus 3786775 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 22845 rs2682484 KLRA1 10748 12 10639670 NM_006611 NP_006602 A/T F110Y plus 23787553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 22846 rs2682484 KLRA1 10748 12 10639670 NM_006611 NP_006602 A/T F110Y plus 23787553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 22847 rs2682484 KLRA1 10748 12 10639670 NM_006611 NP_006602 A/T F110Y plus 23787553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,submitter,freq,cluster" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 22848 rs2686817 PKD1L1 168507 7 47742167 NM_138295 NP_612152 A/C V312F plus 23744603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 22849 rs2686817 PKD1L1 168507 7 47742167 NM_138295 NP_612152 A/C V312F plus 23744603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 22850 rs2686817 PKD1L1 168507 7 47742167 NM_138295 NP_612152 A/C V312F plus 23744603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 22851 rs2700500 HCFC2 29915 12 102960941 NM_013320 NP_037452 A/C A46S minus 3816213 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 12q23.3 host cell factor 2 22852 rs2706762 PCYOX1 51449 2 70400121 NM_016297 NP_057381 C/T S149F plus 3825043 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,submitter,freq" 2p13.3 prenylcysteine oxidase 1 22853 rs2706762 PCYOX1 51449 2 70400121 NM_016297 NP_057381 C/T S149F plus 24652156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,submitter,freq" 2p13.3 prenylcysteine oxidase 1 22854 rs2706762 PCYOX1 51449 2 70400121 NM_016297 NP_057381 C/T S149F plus 24652156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,freq" 2p13.3 prenylcysteine oxidase 1 22855 rs2706762 PCYOX1 51449 2 70400121 NM_016297 NP_057381 C/T S149F plus 24652156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq" 2p13.3 prenylcysteine oxidase 1 22856 rs2707466 WNT16 51384 7 120573040 NM_016087 NP_057171 A/G T253I minus 28447374 914 HG_BONN_CNS_SNPS EURO96 European 188 0.45 123 "by cluster,freq" 7q31 "wingless-type MMTV integration site family, member 16" 22857 rs2707466 WNT16 51384 7 120573040 NM_057168 NP_476509 A/G T263I minus 28447374 914 HG_BONN_CNS_SNPS EURO96 European 188 0.45 123 "by cluster,freq" 7q31 "wingless-type MMTV integration site family, member 16" 22858 rs2711941 KLHL5 51088 4 38886728 NM_199039 NP_950240 G/T I10L minus 23718419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 4p14 kelch-like 5 (Drosophila) 22859 rs2711941 KLHL5 51088 4 38886728 NM_199039 NP_950240 G/T I10L minus 23718419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by doubleHit,freq,cluster" 4p14 kelch-like 5 (Drosophila) 22860 rs2711941 KLHL5 51088 4 38886728 NM_199039 NP_950240 G/T I10L minus 23718419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4p14 kelch-like 5 (Drosophila) 22861 rs2715687 GUCA1C 9626 3 110122113 NM_005459 NP_005450 A/G V72I minus 23946876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 22862 rs2715687 GUCA1C 9626 3 110122113 NM_005459 NP_005450 A/G V72I minus 23946876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 22863 rs2715687 GUCA1C 9626 3 110122113 NM_005459 NP_005450 A/G V72I minus 23946876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 22864 rs2715860 DDEF2 8853 2 9479134 NM_003887 NP_003878 C/G E748D plus 4998002 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.18 123 "by doubleHit,submitter,freq,cluster" 2p25 development and differentiation enhancing factor 2 22865 rs2715860 DDEF2 8853 2 9479134 NM_003887 NP_003878 C/G E748D plus 24265349 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.32 123 "by doubleHit,submitter,freq,cluster" 2p25 development and differentiation enhancing factor 2 22866 rs2715860 DDEF2 8853 2 9479134 NM_003887 NP_003878 C/G E748D plus 24265349 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "by doubleHit,submitter,freq,cluster" 2p25 development and differentiation enhancing factor 2 22867 rs2715860 DDEF2 8853 2 9479134 NM_003887 NP_003878 C/G E748D plus 24265349 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 2p25 development and differentiation enhancing factor 2 22868 rs2722372 TXNDC3 51314 7 37663507 NM_016616 NP_057700 A/G R43K plus 3844772 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.1 thioredoxin domain containing 3 (spermatozoa) 22869 rs2722372 TXNDC3 51314 7 37663507 NM_016616 NP_057700 A/G R43K plus 4474863 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.1 thioredoxin domain containing 3 (spermatozoa) 22870 rs2722372 TXNDC3 51314 7 37663507 NM_016616 NP_057700 A/G R43K plus 23394202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.1 thioredoxin domain containing 3 (spermatozoa) 22871 rs2722372 TXNDC3 51314 7 37663507 NM_016616 NP_057700 A/G R43K plus 23394202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.1 thioredoxin domain containing 3 (spermatozoa) 22872 rs2722372 TXNDC3 51314 7 37663507 NM_016616 NP_057700 A/G R43K plus 23394202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 7p14.1 thioredoxin domain containing 3 (spermatozoa) 22873 rs2722722 ZNF228 7771 19 49524715 NM_013380 NP_037512 A/G Y479H plus 4932346 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 228 22874 rs2722722 ZNF228 7771 19 49524715 NM_013380 NP_037512 A/G Y479H plus 24685393 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 228 22875 rs2722722 ZNF228 7771 19 49524715 NM_013380 NP_037512 A/G Y479H plus 24685393 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 228 22876 rs2722722 ZNF228 7771 19 49524715 NM_013380 NP_037512 A/G Y479H plus 24685393 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 19q13.2 zinc finger protein 228 22877 rs2722723 ZNF228 7771 19 49524832 NM_013380 NP_037512 C/G E440Q plus 24685394 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 228 22878 rs2722723 ZNF228 7771 19 49524832 NM_013380 NP_037512 C/G E440Q plus 24685394 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 228 22879 rs2722723 ZNF228 7771 19 49524832 NM_013380 NP_037512 C/G E440Q plus 24685394 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 228 22880 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 4318967 506 NCBI NIHPDR NIHPDR 178 0.46 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22881 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 6903978 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.46 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22882 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 6903978 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.44 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22883 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 6903978 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22884 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 6903978 777 SNP500CANCER HISP1 Hispanic (23) 46 0.48 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22885 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 6903978 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.44 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22886 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 16359562 693 EGP_SNPS PDR90 NIHPDR 172 0.43 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22887 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 17206404 1303 SEQUENOM CEPH CEPH (92) 92 0.49 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22888 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 24474132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22889 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 24474132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22890 rs2725362 WRN 7486 8 31118822 NM_000553 NP_000544 G/T L1074F plus 24474132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 8p12-p11.2 Werner syndrome 22891 rs2727288 FTSJ3 117246 17 59254929 NM_017647 NP_060117 A/T S424C minus 3850871 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.38 123 "HapMap,doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22892 rs2727288 FTSJ3 117246 17 59254929 NM_017647 NP_060117 A/T S424C minus 4930300 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.4 123 "HapMap,doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22893 rs2727288 FTSJ3 117246 17 59254929 NM_017647 NP_060117 A/T S424C minus 24571167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22894 rs2727288 FTSJ3 117246 17 59254929 NM_017647 NP_060117 A/T S424C minus 24571167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "HapMap,doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22895 rs2727288 FTSJ3 117246 17 59254929 NM_017647 NP_060117 A/T S424C minus 24571167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 17q23 FtsJ homolog 3 (E. coli) 22896 rs2729835 LACTB 114294 15 61220819 NM_032857 NP_116246 C/T R469K minus 23514813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,submitter,freq,cluster" 15q22.1 "lactamase, beta" 22897 rs2729835 LACTB 114294 15 61220819 NM_032857 NP_116246 C/T R469K minus 23514813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 15q22.1 "lactamase, beta" 22898 rs2729835 LACTB 114294 15 61220819 NM_032857 NP_116246 C/T R469K minus 23514813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,submitter,freq,cluster" 15q22.1 "lactamase, beta" 22899 rs2731073 OR8S1 341568 12 47205823 XM_292136 XP_292136 A/G M48V plus 3855764 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 22900 rs2731073 OR8S1 341568 12 47205823 XM_292136 XP_292136 A/G M48V plus 23394803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "HapMap,doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 22901 rs2731073 OR8S1 341568 12 47205823 XM_292136 XP_292136 A/G M48V plus 23394803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 22902 rs2731073 OR8S1 341568 12 47205823 XM_292136 XP_292136 A/G M48V plus 23394803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 22903 rs2733743 ATP4A 495 19 40742809 NM_000704 NP_000695 A/G V265A plus 4932306 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.41 121 "by cluster,freq" 19q13.1 "ATPase, H+/K+ exchanging, alpha polypeptide" 22904 rs2734705 CLCA1 1179 1 86664345 NM_001285 NP_001276 A/G N357S plus 7988587 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.04 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22905 rs2734705 CLCA1 1179 1 86664345 NM_001285 NP_001276 A/G N357S plus 7988587 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.13 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22906 rs2734705 CLCA1 1179 1 86664345 NM_001285 NP_001276 A/G N357S plus 7988587 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.33 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22907 rs2734742 PPL 5493 16 4878161 NM_002705 NP_002696 A/C R819S minus 23382628 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.3 periplakin 22908 rs2734742 PPL 5493 16 4878161 NM_002705 NP_002696 A/C R819S minus 23382628 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 16p13.3 periplakin 22909 rs2734742 PPL 5493 16 4878161 NM_002705 NP_002696 A/C R819S minus 23382628 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.3 periplakin 22910 rs2736158 BAT2 7916 6 31708283 NM_004638 NP_004629 C/G G1273A minus 23962595 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22911 rs2736158 BAT2 7916 6 31708283 NM_004638 NP_004629 C/G G1273A minus 23962595 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.06 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22912 rs2736158 BAT2 7916 6 31708283 NM_004638 NP_004629 C/G G1273A minus 23962595 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22913 rs2736158 BAT2 7916 6 31708283 NM_080686 NP_542417 C/G G1285A minus 23962595 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22914 rs2736158 BAT2 7916 6 31708283 NM_080686 NP_542417 C/G G1285A minus 23962595 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.06 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22915 rs2736158 BAT2 7916 6 31708283 NM_080686 NP_542417 C/G G1285A minus 23962595 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.3 HLA-B associated transcript 2 22916 rs2736586 OR51Q1 390061 11 5400637 XM_372355 XP_372355 C/T V211M minus 24531811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 22917 rs2736586 OR51Q1 390061 11 5400637 XM_372355 XP_372355 C/T V211M minus 24531811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 22918 rs2736586 OR51Q1 390061 11 5400637 XM_372355 XP_372355 C/T V211M minus 24531811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 22919 rs2736654 GLO1 2739 6 38758606 NM_006708 NP_006699 A/C E111A minus 24369377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.3-p21.1 glyoxalase I 22920 rs2736654 GLO1 2739 6 38758606 NM_006708 NP_006699 A/C E111A minus 24369377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 6p21.3-p21.1 glyoxalase I 22921 rs2736654 GLO1 2739 6 38758606 NM_006708 NP_006699 A/C E111A minus 24369377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.3-p21.1 glyoxalase I 22922 rs2737085 ITGA6 3655 2 173178014 NM_000210 NP_000201 G/T D766Y plus 23222647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 2q31.1 "integrin, alpha 6" 22923 rs2737085 ITGA6 3655 2 173178014 NM_000210 NP_000201 G/T D766Y plus 23222647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq,cluster" 2q31.1 "integrin, alpha 6" 22924 rs2737085 ITGA6 3655 2 173178014 NM_000210 NP_000201 G/T D766Y plus 23222647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq,cluster" 2q31.1 "integrin, alpha 6" 22925 rs2737713 LGALS8 3964 1 233026848 NM_006499 NP_006490 A/T F19Y plus 23880993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22926 rs2737713 LGALS8 3964 1 233026848 NM_006499 NP_006490 A/T F19Y plus 23880993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22927 rs2737713 LGALS8 3964 1 233026848 NM_006499 NP_006490 A/T F19Y plus 23880993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22928 rs2737713 LGALS8 3964 1 233026848 NM_201543 NP_963837 A/T F19Y plus 23880993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22929 rs2737713 LGALS8 3964 1 233026848 NM_201543 NP_963837 A/T F19Y plus 23880993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22930 rs2737713 LGALS8 3964 1 233026848 NM_201543 NP_963837 A/T F19Y plus 23880993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22931 rs2737713 LGALS8 3964 1 233026848 NM_201544 NP_963838 A/T F19Y plus 23880993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22932 rs2737713 LGALS8 3964 1 233026848 NM_201544 NP_963838 A/T F19Y plus 23880993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22933 rs2737713 LGALS8 3964 1 233026848 NM_201544 NP_963838 A/T F19Y plus 23880993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22934 rs2737713 LGALS8 3964 1 233026848 NM_201545 NP_963839 A/T F19Y plus 23880993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22935 rs2737713 LGALS8 3964 1 233026848 NM_201545 NP_963839 A/T F19Y plus 23880993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22936 rs2737713 LGALS8 3964 1 233026848 NM_201545 NP_963839 A/T F19Y plus 23880993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q42-q43 "lectin, galactoside-binding, soluble, 8 (galectin 8)" 22937 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 7987394 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.1 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22938 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 7987394 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22939 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 7987394 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22940 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 23341650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22941 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 23341650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22942 rs2738047 DEFB1 1672 8 6715708 NM_005218 NP_005209 A/G V38I minus 23341650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p23.2-p23.1 "defensin, beta 1" 22943 rs2740349 GEMIN4 50628 17 595248 NM_015721 NP_056536 A/G D929N minus 4930748 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 120 "by doubleHit,freq,cluster" 17p13 gem (nuclear organelle) associated protein 4 22944 rs2740583 PCDHB8 56128 5 140540098 NM_019120 NP_061993 C/T F767L plus 24381608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by submitter,freq" 5q31 protocadherin beta 8 22945 rs2740583 PCDHB8 56128 5 140540098 NM_019120 NP_061993 C/T F767L plus 24381608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by submitter,freq" 5q31 protocadherin beta 8 22946 rs2740583 PCDHB8 56128 5 140540098 NM_019120 NP_061993 C/T F767L plus 24381608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by submitter,freq" 5q31 protocadherin beta 8 22947 rs2741804 OR2D2 120776 11 6869703 XM_062286 XP_062286 C/T M202T minus 24518562 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.44 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 22948 rs2741804 OR2D2 120776 11 6869703 XM_062286 XP_062286 C/T M202T minus 24518562 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 22949 rs2741804 OR2D2 120776 11 6869703 XM_062286 XP_062286 C/T M202T minus 24518562 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.26 123 "by submitter,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 22950 rs2756081 NQO2 4835 6 2955389 NM_000904 NP_000895 C/T L47F plus 14319725 1303 SEQUENOM CEPH CEPH (92) 92 0.17 123 "by doubleHit,freq,cluster" 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 22951 rs2756081 NQO2 4835 6 2955389 NM_000904 NP_000895 C/T L47F plus 23984815 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 22952 rs2756081 NQO2 4835 6 2955389 NM_000904 NP_000895 C/T L47F plus 23984815 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 22953 rs2756081 NQO2 4835 6 2955389 NM_000904 NP_000895 C/T L47F plus 23984815 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 22954 rs2758910 KCNK17 89822 6 39375293 NM_031460 NP_113648 C/T R296Q plus 23428056 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.1 "potassium channel, subfamily K, member 17" 22955 rs2758910 KCNK17 89822 6 39375293 NM_031460 NP_113648 C/T R296Q plus 23428056 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.08 123 "by doubleHit,freq,cluster" 6p21.1 "potassium channel, subfamily K, member 17" 22956 rs2758910 KCNK17 89822 6 39375293 NM_031460 NP_113648 C/T R296Q plus 23428056 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,freq,cluster" 6p21.1 "potassium channel, subfamily K, member 17" 22957 rs2760118 ALDH5A1 7915 6 24611569 NM_001080 NP_001071 A/G H180Y minus 3897614 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 "by doubleHit,freq,cluster" 6p22.2-p22.3 "aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase)" 22958 rs2760118 ALDH5A1 7915 6 24611569 NM_170740 NP_733936 A/G H180Y minus 3897614 1303 SEQUENOM CEPH CEPH (92) 92 0.31 120 "by doubleHit,freq,cluster" 6p22.2-p22.3 "aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase)" 22959 rs2761591 DCDC1 341019 11 31285949 NM_181807 NP_861523 A/G V83M minus 23547962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11p14.1 doublecortin domain containing 1 22960 rs2761591 DCDC1 341019 11 31285949 NM_181807 NP_861523 A/G V83M minus 23547962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 11p14.1 doublecortin domain containing 1 22961 rs2761591 DCDC1 341019 11 31285949 NM_181807 NP_861523 A/G V83M minus 23547962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 11p14.1 doublecortin domain containing 1 22962 rs2764942 NEXN 91624 1 78095867 NM_144573 NP_653174 A/C Q4P plus 3906443 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1p31.1 nexilin (F actin binding protein) 22963 rs2772133 CHD8 57680 14 20923644 XM_370738 XP_370738 A/T N2572Y plus 3919002 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 14q11.2 helicase with SNF2 domain 1 22964 rs2778979 PLXDC2 84898 10 20574339 NM_032812 NP_116201 C/T I458V minus 4926009 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.4 120 "by doubleHit,submitter,freq,cluster" 10p12.33 plexin domain containing 2 22965 rs2782948 PLXNA2 5362 1 204779649 NM_025179 NP_079455 A/G R5Q minus 4934759 738 YUSUKE JBIC-ALLELE Japanese (752) 722 0.46 123 "by doubleHit,freq,cluster" 1q32.2 plexin A2 22966 rs2782948 PLXNA2 5362 1 204779649 NM_025179 NP_079455 A/G R5Q minus 23845553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1q32.2 plexin A2 22967 rs2782948 PLXNA2 5362 1 204779649 NM_025179 NP_079455 A/G R5Q minus 23845553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.44 123 "by doubleHit,freq,cluster" 1q32.2 plexin A2 22968 rs2782948 PLXNA2 5362 1 204779649 NM_025179 NP_079455 A/G R5Q minus 23845553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.44 123 "by doubleHit,freq,cluster" 1q32.2 plexin A2 22969 rs2784734 RERE 473 1 8353020 NM_012102 NP_036234 C/T T1281A plus 3940590 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 100 HapMap 1p36.1-p36.2 arginine-glutamic acid dipeptide (RE) repeats 22970 rs2785204 ENAH 55740 1 222013768 NM_018212 NP_060682 A/T D223E plus 3941512 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 HapMap 1q42.13 enabled homolog (Drosophila) 22971 rs2789417 SLAMF9 89886 1 156736184 NM_033438 NP_254273 A/C I127L minus 3948566 901 AFFY AfAm 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q23.1 SLAM family member 9 22972 rs2789417 SLAMF9 89886 1 156736184 NM_033438 NP_254273 A/C I127L minus 3948566 902 AFFY Caucasian 24 0.04 123 "by doubleHit,submitter,freq,cluster" 1q23.1 SLAM family member 9 22973 rs2789417 SLAMF9 89886 1 156736184 NM_033438 NP_254273 A/C I127L minus 3948566 903 AFFY Asian 12 1 123 "by doubleHit,submitter,freq,cluster" 1q23.1 SLAM family member 9 22974 rs2789417 SLAMF9 89886 1 156736184 NM_033438 NP_254273 A/C I127L minus 3948566 904 AFFY CEPH 12 0.25 123 "by doubleHit,submitter,freq,cluster" 1q23.1 SLAM family member 9 22975 rs2789417 SLAMF9 89886 1 156736184 NM_033438 NP_254273 A/C I127L minus 3948566 905 AFFY PDpanel 48 0.04 123 "by doubleHit,submitter,freq,cluster" 1q23.1 SLAM family member 9 22976 rs2791494 CLCA1 1179 1 86671194 NM_001285 NP_001276 A/G M524T minus 7986633 808 PLUMEDUT population-1 256 0.09 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22977 rs2791494 CLCA1 1179 1 86671194 NM_001285 NP_001276 A/G M524T minus 7986633 809 PLUMEDUT population-2 356 1 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22978 rs2791494 CLCA1 1179 1 86671194 NM_001285 NP_001276 A/G M524T minus 7988643 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.19 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22979 rs2791494 CLCA1 1179 1 86671194 NM_001285 NP_001276 A/G M524T minus 7988643 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.13 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22980 rs2791494 CLCA1 1179 1 86671194 NM_001285 NP_001276 A/G M524T minus 7988643 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 3 0.5 121 "by doubleHit,freq,cluster" 1p31-p22 "chloride channel, calcium activated, family member 1" 22981 rs2792205 SYNE2 23224 14 63629844 NM_015180 NP_055995 C/T W4000R plus 23793512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22982 rs2792205 SYNE2 23224 14 63629844 NM_015180 NP_055995 C/T W4000R plus 23793512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22983 rs2792205 SYNE2 23224 14 63629844 NM_015180 NP_055995 C/T W4000R plus 23793512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22984 rs2792205 SYNE2 23224 14 63629844 NM_182914 NP_878918 C/T W386R plus 23793512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22985 rs2792205 SYNE2 23224 14 63629844 NM_182914 NP_878918 C/T W386R plus 23793512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22986 rs2792205 SYNE2 23224 14 63629844 NM_182914 NP_878918 C/T W386R plus 23793512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 22987 rs2792441 ABCF2 10061 7 150342815 NM_005692 NP_005683 A/G P632L plus 23483797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by submitter,freq,cluster" 7q36 "ATP-binding cassette, sub-family F (GCN20), member 2" 22988 rs2792441 ABCF2 10061 7 150342815 NM_005692 NP_005683 A/G P632L plus 23483797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 7q36 "ATP-binding cassette, sub-family F (GCN20), member 2" 22989 rs2792441 ABCF2 10061 7 150342815 NM_005692 NP_005683 A/G P632L plus 23483797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 7q36 "ATP-binding cassette, sub-family F (GCN20), member 2" 22990 rs2792751 GPAM 57678 10 113930319 NM_020918 NP_065969 A/G I43V minus 24326695 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 22991 rs2792751 GPAM 57678 10 113930319 NM_020918 NP_065969 A/G I43V minus 24326695 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 22992 rs2792751 GPAM 57678 10 113930319 NM_020918 NP_065969 A/G I43V minus 24326695 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 22993 rs2799627 INADL 10207 1 62042101 NM_005799 NP_005790 G/T I870M plus 3965844 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 1p32.1 InaD-like protein 22994 rs2799627 INADL 10207 1 62042101 NM_176877 NP_795352 G/T I870M plus 3965844 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 1p32.1 InaD-like protein 22995 rs2799627 INADL 10207 1 62042101 NM_176878 NP_795353 G/T I870M plus 3965844 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 1p32.1 InaD-like protein 22996 rs2802269 CDC42BPA 8476 1 223488768 NM_003607 NP_003598 A/G A1699V plus 23860786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 22997 rs2802269 CDC42BPA 8476 1 223488768 NM_003607 NP_003598 A/G A1699V plus 23860786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 22998 rs2802269 CDC42BPA 8476 1 223488768 NM_003607 NP_003598 A/G A1699V plus 23860786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 22999 rs2802269 CDC42BPA 8476 1 223488768 NM_014826 NP_055641 A/G A1618V plus 23860786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 23000 rs2802269 CDC42BPA 8476 1 223488768 NM_014826 NP_055641 A/G A1618V plus 23860786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 23001 rs2802269 CDC42BPA 8476 1 223488768 NM_014826 NP_055641 A/G A1618V plus 23860786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 1q42.11 CDC42 binding protein kinase alpha (DMPK-like) 23002 rs2805910 PRG1 5552 10 70526858 NM_002727 NP_002718 A/G R31Q plus 24096614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 10q22.1 "proteoglycan 1, secretory granule" 23003 rs2805910 PRG1 5552 10 70526858 NM_002727 NP_002718 A/G R31Q plus 24096614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,submitter,freq,cluster" 10q22.1 "proteoglycan 1, secretory granule" 23004 rs2805910 PRG1 5552 10 70526858 NM_002727 NP_002718 A/G R31Q plus 24096614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 10q22.1 "proteoglycan 1, secretory granule" 23005 rs2808096 ARHGAP12 94134 10 32168617 NM_018287 NP_060757 C/T F442S minus 24147355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 10q11.1 Rho GTPase activating protein 12 23006 rs2808096 ARHGAP12 94134 10 32168617 NM_018287 NP_060757 C/T F442S minus 24147355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q11.1 Rho GTPase activating protein 12 23007 rs2808096 ARHGAP12 94134 10 32168617 NM_018287 NP_060757 C/T F442S minus 24147355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.34 123 "by cluster,freq" 10q11.1 Rho GTPase activating protein 12 23008 rs2808770 COL27A1 85301 9 114010999 NM_032888 NP_116277 C/T I537T plus 3979209 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 23009 rs2808770 COL27A1 85301 9 114010999 NM_032888 NP_116277 C/T I537T plus 23524253 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 23010 rs2808770 COL27A1 85301 9 114010999 NM_032888 NP_116277 C/T I537T plus 23524253 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 23011 rs2808770 COL27A1 85301 9 114010999 NM_032888 NP_116277 C/T I537T plus 23524253 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,submitter,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 23012 rs2819590 SUMF1 285362 3 4483742 NM_182760 NP_877437 A/G S63N minus 24292893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by submitter,freq" 3p26.2 sulfatase modifying factor 1 23013 rs2819590 SUMF1 285362 3 4483742 NM_182760 NP_877437 A/G S63N minus 24292893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by submitter,freq" 3p26.2 sulfatase modifying factor 1 23014 rs2819590 SUMF1 285362 3 4483742 NM_182760 NP_877437 A/G S63N minus 24292893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 3p26.2 sulfatase modifying factor 1 23015 rs2820289 NAV1 89796 1 198508907 NM_020443 NP_065176 C/T S1270L plus 23846830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 1q32.3 neuron navigator 1 23016 rs2820289 NAV1 89796 1 198508907 NM_020443 NP_065176 C/T S1270L plus 23846830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq,cluster" 1q32.3 neuron navigator 1 23017 rs2820289 NAV1 89796 1 198508907 NM_020443 NP_065176 C/T S1270L plus 23846830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,submitter,freq,cluster" 1q32.3 neuron navigator 1 23018 rs2820312 LMOD1 25802 1 198600914 NM_012134 NP_036266 A/G T267M plus 5006854 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 121 "by doubleHit,submitter,freq,cluster" 1q32 leiomodin 1 (smooth muscle) 23019 rs2822558 ABCC13 150000 21 14593715 NM_172024 NP_742021 A/G S228N plus 3996977 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23020 rs2822558 ABCC13 150000 21 14593715 NM_172024 NP_742021 A/G S228N plus 24719840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23021 rs2822558 ABCC13 150000 21 14593715 NM_172024 NP_742021 A/G S228N plus 24719840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23022 rs2822558 ABCC13 150000 21 14593715 NM_172024 NP_742021 A/G S228N plus 24719840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23023 rs2822558 ABCC13 150000 21 14593715 NM_172026 NP_742023 A/G S199N plus 3996977 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23024 rs2822558 ABCC13 150000 21 14593715 NM_172026 NP_742023 A/G S199N plus 24719840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23025 rs2822558 ABCC13 150000 21 14593715 NM_172026 NP_742023 A/G S199N plus 24719840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23026 rs2822558 ABCC13 150000 21 14593715 NM_172026 NP_742023 A/G S199N plus 24719840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 21q11.2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 13" 23027 rs2822785 SAMSN1 64092 21 14876399 NM_022136 NP_071419 A/G H64Y plus 3997266 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.39 123 "HapMap,doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23028 rs2822785 SAMSN1 64092 21 14876399 NM_022136 NP_071419 A/G H64Y plus 16908202 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23029 rs2822785 SAMSN1 64092 21 14876399 NM_022136 NP_071419 A/G H64Y plus 24719918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23030 rs2822785 SAMSN1 64092 21 14876399 NM_022136 NP_071419 A/G H64Y plus 24719918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23031 rs2822785 SAMSN1 64092 21 14876399 NM_022136 NP_071419 A/G H64Y plus 24719918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23032 rs2822786 SAMSN1 64092 21 14876464 NM_022136 NP_071419 A/G P42L plus 3997267 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.22 123 "by submitter,freq" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23033 rs2822786 SAMSN1 64092 21 14876464 NM_022136 NP_071419 A/G P42L plus 24719919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by submitter,freq" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23034 rs2822786 SAMSN1 64092 21 14876464 NM_022136 NP_071419 A/G P42L plus 24719919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23035 rs2822786 SAMSN1 64092 21 14876464 NM_022136 NP_071419 A/G P42L plus 24719919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by submitter,freq" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23036 rs2822787 SAMSN1 64092 21 14876531 NM_022136 NP_071419 C/T N20D plus 3997268 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.16 123 "by doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23037 rs2822787 SAMSN1 64092 21 14876531 NM_022136 NP_071419 C/T N20D plus 24226081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23038 rs2822787 SAMSN1 64092 21 14876531 NM_022136 NP_071419 C/T N20D plus 24226081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23039 rs2822787 SAMSN1 64092 21 14876531 NM_022136 NP_071419 C/T N20D plus 24226081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 21q11 "SAM domain, SH3 domain and nuclear localisation signals, 1" 23040 rs2824721 PRSS7 5651 21 18591989 NM_002772 NP_002763 A/G P732S plus 4000059 634 PERLEGEN NCBI|NIHPDR NIHPDR 16 0.31 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23041 rs2824721 PRSS7 5651 21 18591989 NM_002772 NP_002763 A/G P732S plus 23778086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23042 rs2824721 PRSS7 5651 21 18591989 NM_002772 NP_002763 A/G P732S plus 23778086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23043 rs2824721 PRSS7 5651 21 18591989 NM_002772 NP_002763 A/G P732S plus 23778086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23044 rs2824790 PRSS7 5651 21 18677911 NM_002772 NP_002763 C/G E134Q plus 4000146 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.16 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23045 rs2824790 PRSS7 5651 21 18677911 NM_002772 NP_002763 C/G E134Q plus 24693964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23046 rs2824790 PRSS7 5651 21 18677911 NM_002772 NP_002763 C/G E134Q plus 24693964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23047 rs2824790 PRSS7 5651 21 18677911 NM_002772 NP_002763 C/G E134Q plus 24693964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,submitter,freq,cluster" 21q21.1 "protease, serine, 7 (enterokinase)" 23048 rs2824804 PRSS7 5651 21 18692433 NM_002772 NP_002763 C/T K77R plus 4000162 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.21 123 "HapMap,submitter,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 23049 rs2824804 PRSS7 5651 21 18692433 NM_002772 NP_002763 C/T K77R plus 4000162 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.08 123 "HapMap,submitter,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 23050 rs2824804 PRSS7 5651 21 18692433 NM_002772 NP_002763 C/T K77R plus 24204741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,submitter,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 23051 rs2824804 PRSS7 5651 21 18692433 NM_002772 NP_002763 C/T K77R plus 24204741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,submitter,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 23052 rs2824804 PRSS7 5651 21 18692433 NM_002772 NP_002763 C/T K77R plus 24204741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 23053 rs2829897 GABPA 2551 21 26058461 NM_002040 NP_002031 C/T A291V plus 4006980 634 PERLEGEN NCBI|NIHPDR NIHPDR 16 0.25 100 "by submitter,freq" 21q21.3 "GA binding protein transcription factor, alpha subunit 60kDa" 23054 rs2829898 GABPA 2551 21 26058802 NM_002040 NP_002031 A/G W323X plus 4006981 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.47 100 "by submitter,freq" 21q21.3 "GA binding protein transcription factor, alpha subunit 60kDa" 23055 rs2829900 GABPA 2551 21 26058866 NM_002040 NP_002031 A/G E345K plus 4006983 634 PERLEGEN NCBI|NIHPDR NIHPDR 8 0.5 100 "by submitter,freq" 21q21.3 "GA binding protein transcription factor, alpha subunit 60kDa" 23056 rs2830585 ADAMTS5 11096 21 27227083 NM_007038 NP_008969 C/T R614H plus 4008065 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.16 123 "HapMap,submitter,freq" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 23057 rs2830585 ADAMTS5 11096 21 27227083 NM_007038 NP_008969 C/T R614H plus 4008065 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 123 "HapMap,submitter,freq" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 23058 rs2830585 ADAMTS5 11096 21 27227083 NM_007038 NP_008969 C/T R614H plus 24474885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,submitter,freq" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 23059 rs2830585 ADAMTS5 11096 21 27227083 NM_007038 NP_008969 C/T R614H plus 24474885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,submitter,freq" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 23060 rs2830585 ADAMTS5 11096 21 27227083 NM_007038 NP_008969 C/T R614H plus 24474885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,submitter,freq" 21q21.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)" 23061 rs2832850 KRTAP13-1 140258 21 30690243 NM_181599 NP_853630 C/T C11R plus 4011466 634 PERLEGEN NCBI|NIHPDR NIHPDR 14 0.21 100 "by submitter,freq" 21q22.1 keratin associated protein 13-1 23062 rs2832851 KRTAP13-1 140258 21 30690554 NM_181599 NP_853630 C/G Q114H plus 4011467 634 PERLEGEN NCBI|NIHPDR NIHPDR 12 0.33 100 "HapMap,submitter" 21q22.1 keratin associated protein 13-1 23063 rs2832851 KRTAP13-1 140258 21 30690554 NM_181599 NP_853630 C/G Q114H plus 4011467 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 100 "HapMap,submitter" 21q22.1 keratin associated protein 13-1 23064 rs2832873 KRTAP15-1 254950 21 30734643 NM_181623 NP_853654 A/C L43M plus 4011500 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 15-1 23065 rs2832873 KRTAP15-1 254950 21 30734643 NM_181623 NP_853654 A/C L43M plus 10990593 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 15-1 23066 rs2832873 KRTAP15-1 254950 21 30734643 NM_181623 NP_853654 A/C L43M plus 24565153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 15-1 23067 rs2832873 KRTAP15-1 254950 21 30734643 NM_181623 NP_853654 A/C L43M plus 24565153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 15-1 23068 rs2832873 KRTAP15-1 254950 21 30734643 NM_181623 NP_853654 A/C L43M plus 24565153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.1 keratin associated protein 15-1 23069 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 4013214 634 PERLEGEN NCBI|NIHPDR NIHPDR 5 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23070 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 9806511 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.18 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23071 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 9806511 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.4 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23072 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 9806511 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23073 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 24115747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23074 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 24115747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.21 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23075 rs2834167 IL10RB 3588 21 33562658 NM_000628 NP_000619 A/G K47E plus 24115747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.11 "interleukin 10 receptor, beta" 23076 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 4014820 634 PERLEGEN NCBI|NIHPDR NIHPDR 7 0.43 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23077 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 12675323 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 1 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23078 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 12675323 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23079 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 12675323 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23080 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 12675323 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23081 rs2835285 CBR3 874 21 36429637 NM_001236 NP_001227 A/G V93I plus 12675323 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by submitter,cluster" 21q22.2 carbonyl reductase 3 23082 rs2836172 DSCR8 84677 21 38450325 NM_032589 NP_115978 A/T K79X plus 4016044 634 PERLEGEN NCBI|NIHPDR NIHPDR 20 0.1 123 "by doubleHit,submitter,freq,cluster" 21q22.2 Down syndrome critical region gene 8 23083 rs2836172 DSCR8 84677 21 38450325 NM_032589 NP_115978 A/T K79X plus 23802858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 21q22.2 Down syndrome critical region gene 8 23084 rs2836172 DSCR8 84677 21 38450325 NM_032589 NP_115978 A/T K79X plus 23802858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 21q22.2 Down syndrome critical region gene 8 23085 rs2836172 DSCR8 84677 21 38450325 NM_032589 NP_115978 A/T K79X plus 23802858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 21q22.2 Down syndrome critical region gene 8 23086 rs2838012 FAM3B 54097 21 41616740 NM_058186 NP_478066 A/G V14M plus 4018493 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.11 123 "HapMap,submitter,freq,cluster" 21q22.3 "family with sequence similarity 3, member B" 23087 rs2838012 FAM3B 54097 21 41616740 NM_058186 NP_478066 A/G V14M plus 4018493 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 123 "HapMap,submitter,freq,cluster" 21q22.3 "family with sequence similarity 3, member B" 23088 rs2838012 FAM3B 54097 21 41616740 NM_058186 NP_478066 A/G V14M plus 23651650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 21q22.3 "family with sequence similarity 3, member B" 23089 rs2838012 FAM3B 54097 21 41616740 NM_058186 NP_478066 A/G V14M plus 23651650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,submitter,freq,cluster" 21q22.3 "family with sequence similarity 3, member B" 23090 rs2838012 FAM3B 54097 21 41616740 NM_058186 NP_478066 A/G V14M plus 23651650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,freq,cluster" 21q22.3 "family with sequence similarity 3, member B" 23091 rs2838602 KRTAP10-10 353333 21 44881821 NM_181688 NP_859016 A/T V20D plus 4019428 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.32 121 "HapMap,submitter,freq,cluster" 21q22.3 keratin associated protein 10-10 23092 rs2838602 KRTAP10-10 353333 21 44881821 NM_181688 NP_859016 A/T V20D plus 10976852 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 121 "HapMap,submitter,freq,cluster" 21q22.3 keratin associated protein 10-10 23093 rs2838622 KRTAP12-2 353323 21 44910805 NM_181684 NP_859012 A/G S143P plus 4019453 634 PERLEGEN NCBI|NIHPDR NIHPDR 12 0.25 121 "by doubleHit,submitter,freq,cluster" 21q22.3 keratin associated protein 12-2 23094 rs2839110 COL6A2 1292 21 46363388 NM_001849 NP_001840 A/G S399N plus 4020159 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23095 rs2839110 COL6A2 1292 21 46363388 NM_001849 NP_001840 A/G S399N plus 19483518 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23096 rs2839110 COL6A2 1292 21 46363388 NM_058174 NP_478054 A/G S399N plus 4020159 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23097 rs2839110 COL6A2 1292 21 46363388 NM_058174 NP_478054 A/G S399N plus 19483518 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23098 rs2839110 COL6A2 1292 21 46363388 NM_058175 NP_478055 A/G S399N plus 4020159 634 PERLEGEN NCBI|NIHPDR NIHPDR 15 0.4 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23099 rs2839110 COL6A2 1292 21 46363388 NM_058175 NP_478055 A/G S399N plus 19483518 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 121 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "collagen, type VI, alpha 2" 23100 rs2839158 LSS 4047 21 46466222 NM_001001438 NP_001001438 C/T R175Q plus 4020215 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23101 rs2839158 LSS 4047 21 46466222 NM_001001438 NP_001001438 C/T R175Q plus 10986959 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23102 rs2839158 LSS 4047 21 46466222 NM_001001438 NP_001001438 C/T R175Q plus 23556719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23103 rs2839158 LSS 4047 21 46466222 NM_001001438 NP_001001438 C/T R175Q plus 23556719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23104 rs2839158 LSS 4047 21 46466222 NM_001001438 NP_001001438 C/T R175Q plus 23556719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23105 rs2839158 LSS 4047 21 46466222 NM_002340 NP_002331 C/T R175Q plus 4020215 634 PERLEGEN NCBI|NIHPDR NIHPDR 18 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23106 rs2839158 LSS 4047 21 46466222 NM_002340 NP_002331 C/T R175Q plus 10986959 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23107 rs2839158 LSS 4047 21 46466222 NM_002340 NP_002331 C/T R175Q plus 23556719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23108 rs2839158 LSS 4047 21 46466222 NM_002340 NP_002331 C/T R175Q plus 23556719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23109 rs2839158 LSS 4047 21 46466222 NM_002340 NP_002331 C/T R175Q plus 23556719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,submitter,freq,cluster" 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 23110 rs2839223 PCNT2 5116 21 46601491 NM_006031 NP_006022 A/G G704E plus 4020284 634 PERLEGEN NCBI|NIHPDR NIHPDR 19 0.11 123 "by submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23111 rs2839223 PCNT2 5116 21 46601491 NM_006031 NP_006022 A/G G704E plus 24532983 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23112 rs2839223 PCNT2 5116 21 46601491 NM_006031 NP_006022 A/G G704E plus 24532983 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23113 rs2839223 PCNT2 5116 21 46601491 NM_006031 NP_006022 A/G G704E plus 24532983 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23114 rs2839227 PCNT2 5116 21 46610952 NM_006031 NP_006022 A/G T879A plus 4020288 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.24 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23115 rs2839227 PCNT2 5116 21 46610952 NM_006031 NP_006022 A/G T879A plus 14438282 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23116 rs2839227 PCNT2 5116 21 46610952 NM_006031 NP_006022 A/G T879A plus 23558055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23117 rs2839227 PCNT2 5116 21 46610952 NM_006031 NP_006022 A/G T879A plus 23558055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23118 rs2839227 PCNT2 5116 21 46610952 NM_006031 NP_006022 A/G T879A plus 23558055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23119 rs2839245 PCNT2 5116 21 46660550 NM_006031 NP_006022 C/T L2097P plus 4020311 634 PERLEGEN NCBI|NIHPDR NIHPDR 9 0.22 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23120 rs2839245 PCNT2 5116 21 46660550 NM_006031 NP_006022 C/T L2097P plus 4020311 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23121 rs2839245 PCNT2 5116 21 46660550 NM_006031 NP_006022 C/T L2097P plus 23558418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.06 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23122 rs2839245 PCNT2 5116 21 46660550 NM_006031 NP_006022 C/T L2097P plus 23558418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23123 rs2839245 PCNT2 5116 21 46660550 NM_006031 NP_006022 C/T L2097P plus 23558418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,submitter,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 23124 rs2839256 PCNT2 5116 21 46672887 NM_006031 NP_006022 A/G A2549T plus 4020323 634 PERLEGEN NCBI|NIHPDR NIHPDR 6 0.33 100 "by submitter,freq" 21q22.3 pericentrin 2 (kendrin) 23125 rs2839500 TMPRSS3 64699 21 42676236 NM_024022 NP_076927 C/T I253V plus 4020687 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23126 rs2839500 TMPRSS3 64699 21 42676236 NM_024022 NP_076927 C/T I253V plus 24132824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23127 rs2839500 TMPRSS3 64699 21 42676236 NM_024022 NP_076927 C/T I253V plus 24132824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23128 rs2839500 TMPRSS3 64699 21 42676236 NM_024022 NP_076927 C/T I253V plus 24132824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23129 rs2839500 TMPRSS3 64699 21 42676236 NM_032401 NP_115777 C/T I126V plus 4020687 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23130 rs2839500 TMPRSS3 64699 21 42676236 NM_032401 NP_115777 C/T I126V plus 24132824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23131 rs2839500 TMPRSS3 64699 21 42676236 NM_032401 NP_115777 C/T I126V plus 24132824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23132 rs2839500 TMPRSS3 64699 21 42676236 NM_032401 NP_115777 C/T I126V plus 24132824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23133 rs2839500 TMPRSS3 64699 21 42676236 NM_032404 NP_115780 C/T I126V plus 4020687 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23134 rs2839500 TMPRSS3 64699 21 42676236 NM_032404 NP_115780 C/T I126V plus 24132824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23135 rs2839500 TMPRSS3 64699 21 42676236 NM_032404 NP_115780 C/T I126V plus 24132824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23136 rs2839500 TMPRSS3 64699 21 42676236 NM_032404 NP_115780 C/T I126V plus 24132824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23137 rs2839500 TMPRSS3 64699 21 42676236 NM_032405 NP_115781 C/T I253V plus 4020687 634 PERLEGEN NCBI|NIHPDR NIHPDR 17 0.18 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23138 rs2839500 TMPRSS3 64699 21 42676236 NM_032405 NP_115781 C/T I253V plus 24132824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23139 rs2839500 TMPRSS3 64699 21 42676236 NM_032405 NP_115781 C/T I253V plus 24132824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23140 rs2839500 TMPRSS3 64699 21 42676236 NM_032405 NP_115781 C/T I253V plus 24132824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by submitter,freq,cluster" 21q22.3 "transmembrane protease, serine 3" 23141 rs2839672 GAD2 2572 10 26548149 NM_000818 NP_000809 A/C P153Q plus 4020968 635 JDRF_WT_DIL UK UK 400 0.01 100 by freq 10p11.23 "glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)" 23142 rs2839673 GAD2 2572 10 26553557 NM_000818 NP_000809 A/G G232E plus 4020969 635 JDRF_WT_DIL UK UK 400 0.01 100 by freq 10p11.23 "glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)" 23143 rs2839678 GAD2 2572 10 26599576 NM_000818 NP_000809 C/G G326A plus 4020974 635 JDRF_WT_DIL UK UK 400 0.1 100 by freq 10p11.23 "glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)" 23144 rs2842899 TRAR3 134860 6 132901302 NM_175057 NP_778227 A/T *61K minus 4025064 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,freq,cluster" 6q23.1 trace amine receptor 3 23145 rs2842899 TRAR3 134860 6 132901302 NM_175057 NP_778227 A/T *61K minus 23388422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 6q23.1 trace amine receptor 3 23146 rs2842899 TRAR3 134860 6 132901302 NM_175057 NP_778227 A/T *61K minus 23388422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 6q23.1 trace amine receptor 3 23147 rs2842899 TRAR3 134860 6 132901302 NM_175057 NP_778227 A/T *61K minus 23388422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 6q23.1 trace amine receptor 3 23148 rs2846412 SLAC2-B 23086 11 107889417 NM_015065 NP_055880 A/G S676N minus 4030244 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 23149 rs2846412 SLAC2-B 23086 11 107889417 NM_015065 NP_055880 A/G S676N minus 5011467 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 23150 rs2846412 SLAC2-B 23086 11 107889417 NM_015065 NP_055880 A/G S676N minus 23619606 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 23151 rs2846412 SLAC2-B 23086 11 107889417 NM_015065 NP_055880 A/G S676N minus 23619606 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 23152 rs2846412 SLAC2-B 23086 11 107889417 NM_015065 NP_055880 A/G S676N minus 23619606 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 11q23.1 SLAC2-B 23153 rs2846707 MMP27 64066 11 102081568 NM_022122 NP_071405 A/G M30V minus 24531267 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 11q24 matrix metalloproteinase 27 23154 rs2846707 MMP27 64066 11 102081568 NM_022122 NP_071405 A/G M30V minus 24531267 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 11q24 matrix metalloproteinase 27 23155 rs2846707 MMP27 64066 11 102081568 NM_022122 NP_071405 A/G M30V minus 24531267 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 11q24 matrix metalloproteinase 27 23156 rs2849233 MRO 83876 18 46585551 NM_031939 NP_114145 C/T T134A plus 4950526 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.27 123 "by doubleHit,submitter,freq,cluster" 18q21 maestro 23157 rs2849233 MRO 83876 18 46585551 NM_031939 NP_114145 C/T T134A plus 24687383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 18q21 maestro 23158 rs2849233 MRO 83876 18 46585551 NM_031939 NP_114145 C/T T134A plus 24687383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,submitter,freq,cluster" 18q21 maestro 23159 rs2849233 MRO 83876 18 46585551 NM_031939 NP_114145 C/T T134A plus 24687383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 18q21 maestro 23160 rs2853699 CCR8 1237 3 39348906 NM_005201 NP_005192 C/G A27G minus 4385008 649 FHCRC POPU1 USA (20) 40 0.25 116 "HapMap,freq,cluster" 3p22 chemokine (C-C motif) receptor 8 23161 rs2853699 CCR8 1237 3 39348906 NM_005201 NP_005192 C/G A27G minus 11565905 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.25 116 "HapMap,freq,cluster" 3p22 chemokine (C-C motif) receptor 8 23162 rs2857663 KRTHB3 3889 12 50999355 NM_002282 NP_002273 C/T R149C minus 4045605 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 120 "HapMap,doubleHit,freq,cluster" 12q13 "keratin, hair, basic, 3" 23163 rs2857663 KRTHB3 3889 12 50999355 NM_002282 NP_002273 C/T R149C minus 4927720 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.09 120 "HapMap,doubleHit,freq,cluster" 12q13 "keratin, hair, basic, 3" 23164 rs2857713 LTA 4049 6 31648535 NM_000595 NP_000586 A/G C13R minus 4328792 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.27 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23165 rs2857713 LTA 4049 6 31648535 NM_000595 NP_000586 A/G C13R minus 4328792 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.29 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23166 rs2857713 LTA 4049 6 31648535 NM_000595 NP_000586 A/G C13R minus 6312881 693 EGP_SNPS PDR90 NIHPDR 166 0.23 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23167 rs2857713 LTA 4049 6 31648535 NM_000595 NP_000586 A/G C13R minus 16360680 649 FHCRC POPU1 USA (20) 40 0.3 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23168 rs2857713 LTA 4049 6 31648535 NM_000595 NP_000586 A/G C13R minus 24797455 1303 SEQUENOM CEPH CEPH (92) 184 0.09 123 "by doubleHit,freq,cluster" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23169 rs2857919 ZNF214 7761 11 6978736 XM_495864 XP_495864 C/T C252R minus 23538654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 23170 rs2857919 ZNF214 7761 11 6978736 XM_495864 XP_495864 C/T C252R minus 23538654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 23171 rs2857919 ZNF214 7761 11 6978736 XM_495864 XP_495864 C/T C252R minus 23538654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,submitter,freq,cluster" 11p15.4 zinc finger protein 214 23172 rs2860112 PDE10A 10846 6 165723207 NM_006661 NP_006652 A/G D707N minus 4049197 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 HapMap 6q26 phosphodiesterase 10A 23173 rs2866413 MANBA 4126 4 103914280 NM_005908 NP_005899 A/G T701M plus 4919198 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.45 123 "by doubleHit,freq,cluster" 4q22-q25 "mannosidase, beta A, lysosomal" 23174 rs2866413 MANBA 4126 4 103914280 NM_005908 NP_005899 A/G T701M plus 23977781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 4q22-q25 "mannosidase, beta A, lysosomal" 23175 rs2866413 MANBA 4126 4 103914280 NM_005908 NP_005899 A/G T701M plus 23977781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 4q22-q25 "mannosidase, beta A, lysosomal" 23176 rs2866413 MANBA 4126 4 103914280 NM_005908 NP_005899 A/G T701M plus 23977781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 4q22-q25 "mannosidase, beta A, lysosomal" 23177 rs2867655 PTPRT 11122 20 41251703 NM_007050 NP_008981 C/G A29P plus 4057139 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.33 101 by freq 20q12-q13 "protein tyrosine phosphatase, receptor type, T" 23178 rs2867655 PTPRT 11122 20 41251703 NM_133170 NP_573400 C/G A29P plus 4057139 771 TSC-CSHL SC_12_A CORIELL Asian (12) 18 0.33 101 by freq 20q12-q13 "protein tyrosine phosphatase, receptor type, T" 23179 rs2869020 OR5L1 219437 11 55335654 XM_166878 XP_166878 A/T I46F minus 23740906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 5, subfamily L, member 1" 23180 rs2869020 OR5L1 219437 11 55335654 XM_166878 XP_166878 A/T I46F minus 23740906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 5, subfamily L, member 1" 23181 rs2869020 OR5L1 219437 11 55335654 XM_166878 XP_166878 A/T I46F minus 23740906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 5, subfamily L, member 1" 23182 rs2876098 CTAG3 285782 6 7319206 NM_175745 NP_786887 G/T E282A plus 24677276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23183 rs2876098 CTAG3 285782 6 7319206 NM_175745 NP_786887 G/T E282A plus 24677276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23184 rs2876098 CTAG3 285782 6 7319206 NM_175745 NP_786887 G/T E282A plus 24677276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23185 rs2876098 CTAG3 285782 6 7319206 NM_205864 NP_995586 G/T E146A plus 24677276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23186 rs2876098 CTAG3 285782 6 7319206 NM_205864 NP_995586 G/T E146A plus 24677276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23187 rs2876098 CTAG3 285782 6 7319206 NM_205864 NP_995586 G/T E146A plus 24677276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq" 6p24.3 cancer/testis antigen 3 23188 rs2886059 FTHFD 10840 3 127348464 NM_012190 NP_036322 G/T V330F minus 23284987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23189 rs2886059 FTHFD 10840 3 127348464 NM_012190 NP_036322 G/T V330F minus 23284987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23190 rs2886059 FTHFD 10840 3 127348464 NM_012190 NP_036322 G/T V330F minus 23284987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23191 rs2886059 FTHFD 10840 3 127348464 NM_144776 NP_658989 G/T V330F minus 23284987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23192 rs2886059 FTHFD 10840 3 127348464 NM_144776 NP_658989 G/T V330F minus 23284987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23193 rs2886059 FTHFD 10840 3 127348464 NM_144776 NP_658989 G/T V330F minus 23284987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 3q21.2 formyltetrahydrofolate dehydrogenase 23194 rs2888782 STEAP 26872 7 89435192 NM_012449 NP_036581 C/G F169L plus 4081175 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 101 "HapMap,freq" 7q21 six transmembrane epithelial antigen of the prostate 23195 rs2893848 BTN2A3 54718 6 26538960 NM_024018 NP_076923 A/G N300S plus 24367652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,submitter,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 23196 rs2893848 BTN2A3 54718 6 26538960 NM_024018 NP_076923 A/G N300S plus 24367652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,submitter,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 23197 rs2893848 BTN2A3 54718 6 26538960 NM_024018 NP_076923 A/G N300S plus 24367652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,submitter,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 23198 rs2896399 METTL2 55798 7 127713330 NM_018396 NP_060866 C/T C59R plus 5250439 1303 SEQUENOM CEPH CEPH (92) 92 0.47 108 by freq 7q32.2 methyltransferase like 2 23199 rs2899642 RNF111 54778 15 57110340 NM_017610 NP_060080 C/G N9K plus 24718526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,submitter,freq,cluster" 15q21 ring finger protein 111 23200 rs2899642 RNF111 54778 15 57110340 NM_017610 NP_060080 C/G N9K plus 24718526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "by doubleHit,submitter,freq,cluster" 15q21 ring finger protein 111 23201 rs2899642 RNF111 54778 15 57110340 NM_017610 NP_060080 C/G N9K plus 24718526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 "by doubleHit,submitter,freq,cluster" 15q21 ring finger protein 111 23202 rs2899849 MBIP 51562 14 35859526 NM_016586 NP_057670 A/T L7H plus 4093971 901 AFFY AfAm 12 0.42 121 "by doubleHit,submitter,freq" 14q13.2 MAP3K12 binding inhibitory protein 1 23203 rs2899849 MBIP 51562 14 35859526 NM_016586 NP_057670 A/T L7H plus 4093971 902 AFFY Caucasian 24 0.04 121 "by doubleHit,submitter,freq" 14q13.2 MAP3K12 binding inhibitory protein 1 23204 rs2899849 MBIP 51562 14 35859526 NM_016586 NP_057670 A/T L7H plus 4093971 903 AFFY Asian 12 0.08 121 "by doubleHit,submitter,freq" 14q13.2 MAP3K12 binding inhibitory protein 1 23205 rs2899849 MBIP 51562 14 35859526 NM_016586 NP_057670 A/T L7H plus 4093971 904 AFFY CEPH 12 0.17 121 "by doubleHit,submitter,freq" 14q13.2 MAP3K12 binding inhibitory protein 1 23206 rs2899849 MBIP 51562 14 35859526 NM_016586 NP_057670 A/T L7H plus 4093971 905 AFFY PDpanel 44 0.2 121 "by doubleHit,submitter,freq" 14q13.2 MAP3K12 binding inhibitory protein 1 23207 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23208 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 901 AFFY AfAm 12 0.42 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23209 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 902 AFFY Caucasian 24 0.17 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23210 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 903 AFFY Asian 12 0.42 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23211 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 904 AFFY CEPH 12 0.33 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23212 rs2900373 OR13C9 286362 9 104459969 XM_210752 XP_210752 A/C E24D plus 4094559 905 AFFY PDpanel 48 0.38 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 9" 23213 rs2903250 IGSF11 152404 3 120131750 NM_152538 NP_689751 G/T P38T plus 4097786 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 123 "HapMap,doubleHit,submitter,freq,cluster" 3q13.33 "immunoglobulin superfamily, member 11" 23214 rs2903250 IGSF11 152404 3 120131750 NM_152538 NP_689751 G/T P38T plus 24288729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 3q13.33 "immunoglobulin superfamily, member 11" 23215 rs2903250 IGSF11 152404 3 120131750 NM_152538 NP_689751 G/T P38T plus 24288729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,submitter,freq,cluster" 3q13.33 "immunoglobulin superfamily, member 11" 23216 rs2903250 IGSF11 152404 3 120131750 NM_152538 NP_689751 G/T P38T plus 24288729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 3q13.33 "immunoglobulin superfamily, member 11" 23217 rs2903566 OR1S1 219959 11 57739472 XM_166917 XP_166917 A/C S227I minus 24558586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 23218 rs2903566 OR1S1 219959 11 57739472 XM_166917 XP_166917 A/C S227I minus 24558586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 23219 rs2903566 OR1S1 219959 11 57739472 XM_166917 XP_166917 A/C S227I minus 24558586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,submitter,freq,cluster" 11q12.1 "olfactory receptor, family 1, subfamily S, member 1" 23220 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 4098392 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23221 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 4098392 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.29 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23222 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 4098392 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.38 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23223 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 4098392 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.47 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23224 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 8430291 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.39 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23225 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 24083677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23226 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 24083677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23227 rs2903808 ZSWIM3 140831 20 43939380 NM_080752 NP_542790 C/T V259A plus 24083677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 20q13.12 "zinc finger, SWIM domain containing 3" 23228 rs2907373 FAM20A 54757 17 64045250 NM_017565 NP_060035 A/G L530S plus 4102509 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 23229 rs2907373 FAM20A 54757 17 64045250 NM_017565 NP_060035 A/G L530S plus 24594460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 23230 rs2907373 FAM20A 54757 17 64045250 NM_017565 NP_060035 A/G L530S plus 24594460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 23231 rs2907373 FAM20A 54757 17 64045250 NM_017565 NP_060035 A/G L530S plus 24594460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,submitter,freq,cluster" 17q24.3 "family with sequence similarity 20, member A" 23232 rs2908004 WNT16 51384 7 120563720 NM_016087 NP_057171 C/T G72R minus 28447370 914 HG_BONN_CNS_SNPS EURO96 European 184 0.44 123 "by cluster,freq" 7q31 "wingless-type MMTV integration site family, member 16" 23233 rs2908004 WNT16 51384 7 120563720 NM_057168 NP_476509 C/T G82R minus 28447370 914 HG_BONN_CNS_SNPS EURO96 European 184 0.44 123 "by cluster,freq" 7q31 "wingless-type MMTV integration site family, member 16" 23234 rs2910313 PCDHB7 56129 5 140533765 NM_018940 NP_061763 C/G V389L plus 4106385 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.44 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 23235 rs2910313 PCDHB7 56129 5 140533765 NM_018940 NP_061763 C/G V389L plus 4919691 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 23236 rs2910313 PCDHB7 56129 5 140533765 NM_018940 NP_061763 C/G V389L plus 24621856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 23237 rs2910313 PCDHB7 56129 5 140533765 NM_018940 NP_061763 C/G V389L plus 24621856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.36 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 23238 rs2910313 PCDHB7 56129 5 140533765 NM_018940 NP_061763 C/G V389L plus 24621856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "HapMap,doubleHit,submitter,freq,cluster" 5q31 protocadherin beta 7 23239 rs2912444 ZNF529 57711 19 41730909 NM_020951 NP_066002 A/C L26V plus 4109075 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 121 "HapMap,submitter,freq,cluster" 19q13.13 zinc finger protein 529 23240 rs2913783 GMCL1L 64396 5 177546789 NM_022471 NP_071916 C/T S40G plus 4998495 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.11 123 "by cluster,freq" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23241 rs2913783 GMCL1L 64396 5 177546789 NM_022471 NP_071916 C/T S40G plus 23945130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by cluster,freq" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23242 rs2913783 GMCL1L 64396 5 177546789 NM_022471 NP_071916 C/T S40G plus 23945130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23243 rs2913783 GMCL1L 64396 5 177546789 NM_022471 NP_071916 C/T S40G plus 23945130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23244 rs2917782 STARD6 147323 18 50109719 NM_139171 NP_631910 A/G E159K minus 5180962 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 108 "HapMap,doubleHit,freq" 18q21.2 START domain containing 6 23245 rs2920048 ZFPM2 23414 8 106883832 NM_012082 NP_036214 C/G E782D plus 24524275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by submitter,freq" 8q23 "zinc finger protein, multitype 2" 23246 rs2920048 ZFPM2 23414 8 106883832 NM_012082 NP_036214 C/G E782D plus 24524275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq" 8q23 "zinc finger protein, multitype 2" 23247 rs2920048 ZFPM2 23414 8 106883832 NM_012082 NP_036214 C/G E782D plus 24524275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq" 8q23 "zinc finger protein, multitype 2" 23248 rs2920217 ZNF509 166793 4 4422594 NM_145291 NP_660334 G/T Y320S minus 4119325 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2 zinc finger protein 509 23249 rs2920217 ZNF509 166793 4 4422594 NM_145291 NP_660334 G/T Y320S minus 24383050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2 zinc finger protein 509 23250 rs2920217 ZNF509 166793 4 4422594 NM_145291 NP_660334 G/T Y320S minus 24383050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2 zinc finger protein 509 23251 rs2920217 ZNF509 166793 4 4422594 NM_145291 NP_660334 G/T Y320S minus 24383050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,doubleHit,submitter,freq,cluster" 4p16.2 zinc finger protein 509 23252 rs2921563 HKR1 284459 19 42545880 NM_181786 NP_861451 A/G R448H plus 4931786 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.09 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 23253 rs2921563 HKR1 284459 19 42545880 NM_181786 NP_861451 A/G R448H plus 23613514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 23254 rs2921563 HKR1 284459 19 42545880 NM_181786 NP_861451 A/G R448H plus 23613514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 23255 rs2921563 HKR1 284459 19 42545880 NM_181786 NP_861451 A/G R448H plus 23613514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 23256 rs2929516 MYO9A 4649 15 70125477 NM_006901 NP_008832 C/T T161I minus 4131370 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 101 HapMap 15q22-q23 myosin IXA 23257 rs2941256 RRN3 54700 16 15074392 NM_018427 NP_060897 A/G I348M minus 4146849 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 101 "HapMap,freq" 16p12 RNA polymerase I transcription factor RRN3 23258 rs2942194 MSCP 51312 8 23479614 NM_018579 NP_061049 C/T I87V minus 4922029 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.16 123 "by doubleHit,submitter,freq,cluster" 8p21.2 mitochondrial solute carrier protein 23259 rs2942194 MSCP 51312 8 23479614 NM_018579 NP_061049 C/T I87V minus 24494493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 8p21.2 mitochondrial solute carrier protein 23260 rs2942194 MSCP 51312 8 23479614 NM_018579 NP_061049 C/T I87V minus 24494493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,submitter,freq,cluster" 8p21.2 mitochondrial solute carrier protein 23261 rs2942194 MSCP 51312 8 23479614 NM_018579 NP_061049 C/T I87V minus 24494493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,submitter,freq,cluster" 8p21.2 mitochondrial solute carrier protein 23262 rs2946994 CTBP2 1488 10 126704704 NM_022802 NP_073713 C/G Q539E minus 24583930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,submitter,freq,cluster" 10q26.2 C-terminal binding protein 2 23263 rs2946994 CTBP2 1488 10 126704704 NM_022802 NP_073713 C/G Q539E minus 24583930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 10q26.2 C-terminal binding protein 2 23264 rs2946994 CTBP2 1488 10 126704704 NM_022802 NP_073713 C/G Q539E minus 24583930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,submitter,freq,cluster" 10q26.2 C-terminal binding protein 2 23265 rs2950845 PCDHB8 56128 5 140538396 NM_019120 NP_061993 G/T K199N minus 5008789 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.09 108 "by cluster,freq" 5q31 protocadherin beta 8 23266 rs2956114 MMRP19 51074 11 34894389 NM_015957 NP_057041 C/T R7W minus 24541916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.33 123 "by doubleHit,freq" 11p13 likely ortholog of mouse monocyte macrophage 19 23267 rs2956114 MMRP19 51074 11 34894389 NM_015957 NP_057041 C/T R7W minus 24541916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.25 123 "by doubleHit,freq" 11p13 likely ortholog of mouse monocyte macrophage 19 23268 rs2956114 MMRP19 51074 11 34894389 NM_015957 NP_057041 C/T R7W minus 24541916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "by doubleHit,freq" 11p13 likely ortholog of mouse monocyte macrophage 19 23269 rs2958720 IREB2 3658 15 76545732 NM_004136 NP_004127 C/G V159L plus 23439630 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q24.1 iron-responsive element binding protein 2 23270 rs2958720 IREB2 3658 15 76545732 NM_004136 NP_004127 C/G V159L plus 23439630 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 15q24.1 iron-responsive element binding protein 2 23271 rs2958720 IREB2 3658 15 76545732 NM_004136 NP_004127 C/G V159L plus 23439630 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q24.1 iron-responsive element binding protein 2 23272 rs2960306 GRK4 2868 4 3027504 NM_005307 NP_005298 G/T R33L plus 23248272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23273 rs2960306 GRK4 2868 4 3027504 NM_005307 NP_005298 G/T R33L plus 23248272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23274 rs2960306 GRK4 2868 4 3027504 NM_005307 NP_005298 G/T R33L plus 23248272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23275 rs2960306 GRK4 2868 4 3027504 NM_182982 NP_892027 G/T R65L plus 23248272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23276 rs2960306 GRK4 2868 4 3027504 NM_182982 NP_892027 G/T R65L plus 23248272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23277 rs2960306 GRK4 2868 4 3027504 NM_182982 NP_892027 G/T R65L plus 23248272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 4p16.3 G protein-coupled receptor kinase 4 23278 rs2961135 OR2A25 392138 7 143209585 XM_373210 XP_373210 C/G A209P plus 4172529 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily A, member 25" 23279 rs2961135 OR2A25 392138 7 143209585 XM_373210 XP_373210 C/G A209P plus 24687404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily A, member 25" 23280 rs2961135 OR2A25 392138 7 143209585 XM_373210 XP_373210 C/G A209P plus 24687404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily A, member 25" 23281 rs2961135 OR2A25 392138 7 143209585 XM_373210 XP_373210 C/G A209P plus 24687404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 7q35 "olfactory receptor, family 2, subfamily A, member 25" 23282 rs2961663 GMCL1L 64396 5 177546150 NM_022471 NP_071916 C/T G253S plus 23340529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq,cluster" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23283 rs2961663 GMCL1L 64396 5 177546150 NM_022471 NP_071916 C/T G253S plus 23340529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by submitter,freq,cluster" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23284 rs2961663 GMCL1L 64396 5 177546150 NM_022471 NP_071916 C/T G253S plus 23340529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by submitter,freq,cluster" 5q35.3 germ cell-less homolog 1 (Drosophila)-like 23285 rs2968557 ADCK2 90956 7 139827233 NM_052853 NP_443085 A/G S307P minus 4181255 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,doubleHit,freq,cluster" 7q32-q34 aarF domain containing kinase 2 23286 rs2972588 MBD3L1 85509 19 8814922 NM_145208 NP_660209 C/T R190C plus 24090848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,submitter,freq,cluster" 19p13.2 methyl-CpG binding domain protein 3-like 1 23287 rs2972588 MBD3L1 85509 19 8814922 NM_145208 NP_660209 C/T R190C plus 24090848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,submitter,freq,cluster" 19p13.2 methyl-CpG binding domain protein 3-like 1 23288 rs2972588 MBD3L1 85509 19 8814922 NM_145208 NP_660209 C/T R190C plus 24090848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 19p13.2 methyl-CpG binding domain protein 3-like 1 23289 rs2973571 RGNEF 64283 5 73178052 XM_371755 XP_371755 A/G S544L minus 24671671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by submitter,freq" 5q13.3 Rho-guanine nucleotide exchange factor 23290 rs2973571 RGNEF 64283 5 73178052 XM_371755 XP_371755 A/G S544L minus 24671671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by submitter,freq" 5q13.3 Rho-guanine nucleotide exchange factor 23291 rs2973571 RGNEF 64283 5 73178052 XM_371755 XP_371755 A/G S544L minus 24671671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by submitter,freq" 5q13.3 Rho-guanine nucleotide exchange factor 23292 rs2974617 TRIM36 55521 5 114490254 NM_018700 NP_061170 C/T D678N plus 23754940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5q23.1 tripartite motif-containing 36 23293 rs2974617 TRIM36 55521 5 114490254 NM_018700 NP_061170 C/T D678N plus 23754940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 5q23.1 tripartite motif-containing 36 23294 rs2974617 TRIM36 55521 5 114490254 NM_018700 NP_061170 C/T D678N plus 23754940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 5q23.1 tripartite motif-containing 36 23295 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 7987185 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.1 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23296 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 7987185 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23297 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 7987185 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23298 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 23453617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23299 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 23453617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23300 rs2975634 CARD4 10392 7 30264933 NM_006092 NP_006083 A/G R447H minus 23453617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7p15-p14 "caspase recruitment domain family, member 4" 23301 rs2976189 SLC7A13 157724 8 87304389 NM_138817 NP_620172 A/G V249M minus 4190080 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,submitter,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 23302 rs2976189 SLC7A13 157724 8 87304389 NM_138817 NP_620172 A/G V249M minus 24478027 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,submitter,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 23303 rs2976189 SLC7A13 157724 8 87304389 NM_138817 NP_620172 A/G V249M minus 24478027 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,submitter,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 23304 rs2976189 SLC7A13 157724 8 87304389 NM_138817 NP_620172 A/G V249M minus 24478027 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 23305 rs2980618 CML66 84955 8 110371174 NM_032869 NP_116258 C/T I269V plus 24543236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23306 rs2980618 CML66 84955 8 110371174 NM_032869 NP_116258 C/T I269V plus 24543236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23307 rs2980618 CML66 84955 8 110371174 NM_032869 NP_116258 C/T I269V plus 24543236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23308 rs2980619 CML66 84955 8 110371223 NM_032869 NP_116258 G/T L252F plus 11966953 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23309 rs2980619 CML66 84955 8 110371223 NM_032869 NP_116258 G/T L252F plus 24082893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23310 rs2980619 CML66 84955 8 110371223 NM_032869 NP_116258 G/T L252F plus 24082893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23311 rs2980619 CML66 84955 8 110371223 NM_032869 NP_116258 G/T L252F plus 24082893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,submitter,freq,cluster" 8q23 chronic myelogenous leukemia tumor antigen 66 23312 rs2981546 HEG 57493 3 126228739 XM_087386 XP_087386 C/T S418P minus 24325240 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,submitter,freq,cluster" 3q21.2 HEG homolog 23313 rs2981546 HEG 57493 3 126228739 XM_087386 XP_087386 C/T S418P minus 24325240 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,submitter,freq,cluster" 3q21.2 HEG homolog 23314 rs2981546 HEG 57493 3 126228739 XM_087386 XP_087386 C/T S418P minus 24325240 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 3q21.2 HEG homolog 23315 rs3012075 CTBP2 1488 10 126704956 NM_022802 NP_073713 A/G Y455H plus 24583936 1371 PERLEGEN AFD_EUR_PANEL European American (24) 23 0.5 123 "by doubleHit,freq,cluster" 10q26.2 C-terminal binding protein 2 23316 rs3012075 CTBP2 1488 10 126704956 NM_022802 NP_073713 A/G Y455H plus 24583936 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.34 123 "by doubleHit,freq,cluster" 10q26.2 C-terminal binding protein 2 23317 rs3012075 CTBP2 1488 10 126704956 NM_022802 NP_073713 A/G Y455H plus 24583936 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by doubleHit,freq,cluster" 10q26.2 C-terminal binding protein 2 23318 rs3014626 PPP1R15B 84919 1 201111274 NM_032833 NP_116222 C/T N308S plus 4241349 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 15B" 23319 rs3024477 F13A1 2162 6 6196119 NM_000129 NP_000120 A/T Y205F minus 4250362 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 102 by freq 6p25.3-p24.3 "coagulation factor XIII, A1 polypeptide" 23320 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 4250599 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.11 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23321 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 5586689 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23322 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 5586689 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23323 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 5586689 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23324 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 5586689 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23325 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 5586689 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23326 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 23444676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23327 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 23444676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23328 rs3024677 IL4R 3566 16 27281909 NM_000418 NP_000409 A/G V579I plus 23444676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23329 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 4250600 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23330 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 4250600 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23331 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 5586682 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23332 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 5586682 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23333 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 5586682 776 SNP500CANCER AFR1 African / African-American (24) 46 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23334 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 5586682 777 SNP500CANCER HISP1 Hispanic (23) 42 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23335 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 5586682 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23336 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 23444688 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23337 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 23444688 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23338 rs3024678 IL4R 3566 16 27282197 NM_000418 NP_000409 C/T P675S plus 23444688 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p11.2-12.1 interleukin 4 receptor 23339 rs3024772 PROZ 8858 13 112874101 NM_003891 NP_003882 A/G R295H plus 4250711 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 102 by freq 13q34 "protein Z, vitamin K-dependent plasma glycoprotein" 23340 rs3024772 PROZ 8858 13 112874101 NM_003891 NP_003882 A/G R295H plus 4250711 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 102 by freq 13q34 "protein Z, vitamin K-dependent plasma glycoprotein" 23341 rs3024801 SFTPB 6439 2 85804443 NM_000542 NP_000533 C/T L176F minus 4250742 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 102 by freq 2p12-p11.2 "surfactant, pulmonary-associated protein B" 23342 rs3024801 SFTPB 6439 2 85804443 NM_198843 NP_942140 C/T L176F minus 4250742 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 102 by freq 2p12-p11.2 "surfactant, pulmonary-associated protein B" 23343 rs3024809 SFTPB 6439 2 85802486 NM_000542 NP_000533 A/G R272H minus 4250750 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 102 by freq 2p12-p11.2 "surfactant, pulmonary-associated protein B" 23344 rs3024809 SFTPB 6439 2 85802486 NM_198843 NP_942140 A/G R272H minus 4250750 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 102 by freq 2p12-p11.2 "surfactant, pulmonary-associated protein B" 23345 rs3024839 STAT4 6775 2 191766488 NM_003151 NP_003142 A/G I115V minus 4250788 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 102 "HapMap,freq" 2q32.2-q32.3 signal transducer and activator of transcription 4 23346 rs3024839 STAT4 6775 2 191766488 NM_003151 NP_003142 A/G I115V minus 4250788 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 102 "HapMap,freq" 2q32.2-q32.3 signal transducer and activator of transcription 4 23347 rs3027956 SLC1A5 6510 19 51983014 NM_005628 NP_005619 C/G P17A minus 4258971 662 NUNES SPAIN_1 Spanish (general population and cystic fibrosis patients) 146 0.29 123 "by cluster,freq" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23348 rs3027956 SLC1A5 6510 19 51983014 NM_005628 NP_005619 C/G P17A minus 23991299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.21 123 "by cluster,freq" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23349 rs3027956 SLC1A5 6510 19 51983014 NM_005628 NP_005619 C/G P17A minus 23991299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23350 rs3027956 SLC1A5 6510 19 51983014 NM_005628 NP_005619 C/G P17A minus 23991299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.48 123 "by cluster,freq" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23351 rs3027961 SLC1A5 6510 19 51970699 NM_005628 NP_005619 C/G V512L minus 4258977 662 NUNES SPAIN_1 Spanish (general population and cystic fibrosis patients) 138 0.2 120 "HapMap,freq,cluster" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23352 rs3027961 SLC1A5 6510 19 51970699 NM_005628 NP_005619 C/G V512L minus 4258977 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,freq,cluster" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23353 rs3027961 SLC1A5 6510 19 51970699 NM_005628 NP_005619 C/G V512L minus 16790225 1303 SEQUENOM CEPH CEPH (92) 92 0.33 120 "HapMap,freq,cluster" 19q13.3 "solute carrier family 1 (neutral amino acid transporter), member 5" 23354 rs3087335 CDK2 1017 12 54647103 NM_001798 NP_001789 A/C Y15S plus 4318859 506 NCBI NIHPDR NIHPDR 166 0.01 102 HapMap 12q13 cyclin-dependent kinase 2 23355 rs3087335 CDK2 1017 12 54647103 NM_001798 NP_001789 A/C Y15S plus 4318859 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 102 HapMap 12q13 cyclin-dependent kinase 2 23356 rs3087335 CDK2 1017 12 54647103 NM_052827 NP_439892 A/C Y15S plus 4318859 506 NCBI NIHPDR NIHPDR 166 0.01 102 HapMap 12q13 cyclin-dependent kinase 2 23357 rs3087335 CDK2 1017 12 54647103 NM_052827 NP_439892 A/C Y15S plus 4318859 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 102 HapMap 12q13 cyclin-dependent kinase 2 23358 rs3087366 POLD2 5425 7 43929065 NM_006230 NP_006221 A/G N303S minus 4318902 506 NCBI NIHPDR NIHPDR 164 0.01 106 "HapMap,freq,cluster" 7p13 "polymerase (DNA directed), delta 2, regulatory subunit 50kDa" 23359 rs3087366 POLD2 5425 7 43929065 NM_006230 NP_006221 A/G N303S minus 4479012 693 EGP_SNPS PDR90 NIHPDR 178 0.01 106 "HapMap,freq,cluster" 7p13 "polymerase (DNA directed), delta 2, regulatory subunit 50kDa" 23360 rs3087366 POLD2 5425 7 43929065 NM_006230 NP_006221 A/G N303S minus 4479012 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 "HapMap,freq,cluster" 7p13 "polymerase (DNA directed), delta 2, regulatory subunit 50kDa" 23361 rs3087374 POLG 5428 15 87660998 NM_002693 NP_002684 G/T Q1236H minus 4318910 506 NCBI NIHPDR NIHPDR 176 0.04 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 23362 rs3087374 POLG 5428 15 87660998 NM_002693 NP_002684 G/T Q1236H minus 4388391 693 EGP_SNPS PDR90 NIHPDR 172 0.04 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 23363 rs3087374 POLG 5428 15 87660998 NM_002693 NP_002684 G/T Q1236H minus 24511209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 23364 rs3087374 POLG 5428 15 87660998 NM_002693 NP_002684 G/T Q1236H minus 24511209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 23365 rs3087374 POLG 5428 15 87660998 NM_002693 NP_002684 G/T Q1236H minus 24511209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q25 "polymerase (DNA directed), gamma" 23366 rs3087386 REV1L 51455 2 99514024 NM_016316 NP_057400 C/T F257S minus 4318922 506 NCBI NIHPDR NIHPDR 176 0.42 119 "by doubleHit,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23367 rs3087386 REV1L 51455 2 99514024 NM_016316 NP_057400 C/T F257S minus 4935109 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.32 119 "by doubleHit,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23368 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 506 NCBI NIHPDR NIHPDR 174 0.11 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23369 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23370 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 901 AFFY AfAm 10 0.4 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23371 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 902 AFFY Caucasian 22 1 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23372 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 903 AFFY Asian 12 1 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23373 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 904 AFFY CEPH 6 1 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23374 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 4318938 905 AFFY PDpanel 42 0.02 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23375 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 23232246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.12 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23376 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 23232246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23377 rs3087399 REV1L 51455 2 99513676 NM_016316 NP_057400 A/G N373S minus 23232246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,submitter,freq,cluster" 2q11.1-q11.2 REV1-like (yeast) 23378 rs3087401 REV1L 51455 2 99479463 NM_016316 NP_057400 A/G A1003T minus 4318940 506 NCBI NIHPDR NIHPDR 174 0.08 102 by freq 2q11.1-q11.2 REV1-like (yeast) 23379 rs3087403 REV1L 51455 2 99517388 NM_016316 NP_057400 A/G V138M minus 4318942 506 NCBI NIHPDR NIHPDR 178 0.26 123 "HapMap,submitter,freq" 2q11.1-q11.2 REV1-like (yeast) 23380 rs3087403 REV1L 51455 2 99517388 NM_016316 NP_057400 A/G V138M minus 4318942 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,submitter,freq" 2q11.1-q11.2 REV1-like (yeast) 23381 rs3087403 REV1L 51455 2 99517388 NM_016316 NP_057400 A/G V138M minus 24295357 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,submitter,freq" 2q11.1-q11.2 REV1-like (yeast) 23382 rs3087403 REV1L 51455 2 99517388 NM_016316 NP_057400 A/G V138M minus 24295357 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,submitter,freq" 2q11.1-q11.2 REV1-like (yeast) 23383 rs3087403 REV1L 51455 2 99517388 NM_016316 NP_057400 A/G V138M minus 24295357 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,submitter,freq" 2q11.1-q11.2 REV1-like (yeast) 23384 rs3087414 WRN 7486 8 31119686 NM_000553 NP_000544 C/T S1079L plus 4318962 506 NCBI NIHPDR NIHPDR 178 0.02 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23385 rs3087414 WRN 7486 8 31119686 NM_000553 NP_000544 C/T S1079L plus 16359568 693 EGP_SNPS PDR90 NIHPDR 176 0.02 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23386 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 4318975 506 NCBI NIHPDR NIHPDR 176 0.01 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23387 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 5586964 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 1 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23388 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 5586964 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23389 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 5586964 776 SNP500CANCER AFR1 African / African-American (24) 48 1 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23390 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 5586964 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23391 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 5586964 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23392 rs3087425 WRN 7486 8 31097352 NM_000553 NP_000544 C/T R834C plus 16359516 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 "by cluster,freq" 8p12-p11.2 Werner syndrome 23393 rs3087469 NTHL1 4913 16 2037789 NM_002528 NP_002519 C/T R21W minus 4319036 506 NCBI NIHPDR NIHPDR 166 0.01 106 "by cluster,freq" 16p13.3 nth endonuclease III-like 1 (E. coli) 23394 rs3087469 NTHL1 4913 16 2037789 NM_002528 NP_002519 C/T R21W minus 4442835 693 EGP_SNPS PDR90 NIHPDR 150 0.01 106 "by cluster,freq" 16p13.3 nth endonuclease III-like 1 (E. coli) 23395 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 4474409 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.08 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23396 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 4474409 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23397 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 4474409 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23398 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 24478259 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23399 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 24478259 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23400 rs3087615 PMPCB 9512 7 102546074 NM_004279 NP_004270 A/C E396D minus 24478259 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,submitter,freq,cluster" 7q22-q32 peptidase (mitochondrial processing) beta 23401 rs3088113 CKAP4 10970 12 105136036 NM_006825 NP_006816 A/G A348T minus 16204030 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 by freq 12q24.11 cytoskeleton-associated protein 4 23402 rs3088142 DUSP13 51207 10 76524570 NM_016364 NP_057448 C/T C156Y plus 4926323 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.08 123 "by doubleHit,freq,cluster" 10q22.3 dual specificity phosphatase 13 23403 rs3088142 DUSP13 51207 10 76524570 NM_016364 NP_057448 C/T C156Y plus 19160101 1303 SEQUENOM CEPH CEPH (92) 92 0.36 123 "by doubleHit,freq,cluster" 10q22.3 dual specificity phosphatase 13 23404 rs3088142 DUSP13 51207 10 76524570 NM_016364 NP_057448 C/T C156Y plus 24591929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q22.3 dual specificity phosphatase 13 23405 rs3088142 DUSP13 51207 10 76524570 NM_016364 NP_057448 C/T C156Y plus 24591929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 10q22.3 dual specificity phosphatase 13 23406 rs3088142 DUSP13 51207 10 76524570 NM_016364 NP_057448 C/T C156Y plus 24591929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 10q22.3 dual specificity phosphatase 13 23407 rs3088190 DO 420 12 14873619 NM_021071 NP_066549 C/G L300V plus 4322659 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 102 "HapMap,freq" 12q13.2-q13.3 Dombrock blood group 23408 rs3088190 DO 420 12 14873619 NM_021071 NP_066549 C/G L300V plus 4322659 1303 SEQUENOM CEPH CEPH (92) 92 0.11 102 "HapMap,freq" 12q13.2-q13.3 Dombrock blood group 23409 rs3088235 BSPRY 54836 9 113211888 NM_017688 NP_060158 C/T T273I plus 20376862 1303 SEQUENOM CEPH CEPH (92) 92 0.33 120 "by doubleHit,freq,cluster" 9q33.1 B-box and SPRY domain containing 23410 rs3092856 ATM 472 11 107664942 NM_000051 NP_000042 C/T H1380Y plus 4325144 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23411 rs3092856 ATM 472 11 107664942 NM_000051 NP_000042 C/T H1380Y plus 4479902 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23412 rs3092856 ATM 472 11 107664942 NM_000051 NP_000042 C/T H1380Y plus 6904955 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23413 rs3092856 ATM 472 11 107664942 NM_138292 NP_612149 C/T H32Y plus 4325144 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23414 rs3092856 ATM 472 11 107664942 NM_138292 NP_612149 C/T H32Y plus 4479902 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23415 rs3092856 ATM 472 11 107664942 NM_138292 NP_612149 C/T H32Y plus 6904955 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23416 rs3092856 ATM 472 11 107664942 NM_138293 NP_612150 C/T H32Y plus 4325144 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23417 rs3092856 ATM 472 11 107664942 NM_138293 NP_612150 C/T H32Y plus 4479902 506 NCBI NIHPDR NIHPDR 170 0.04 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23418 rs3092856 ATM 472 11 107664942 NM_138293 NP_612150 C/T H32Y plus 6904955 693 EGP_SNPS PDR90 NIHPDR 178 0.03 116 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23419 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 4325146 527 OEFNER AUTOSOME Stanford Autosome Collection 194 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23420 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 4479922 506 NCBI NIHPDR NIHPDR 168 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23421 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 5586264 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23422 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 5586264 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23423 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 5586264 776 SNP500CANCER AFR1 African / African-American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23424 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 5586264 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23425 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 5586264 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23426 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 6904921 693 EGP_SNPS PDR90 NIHPDR 178 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23427 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 23582791 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23428 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 23582791 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23429 rs3092857 ATM 472 11 107648509 NM_000051 NP_000042 A/G M1040V plus 23582791 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 23430 rs3093105 CYP4F2 8529 19 15869388 NM_001082 NP_001073 G/T W12G minus 4328282 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.21 111 by freq 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23431 rs3093105 CYP4F2 8529 19 15869388 NM_001082 NP_001073 G/T W12G minus 4328282 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 111 by freq 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23432 rs3093153 CYP4F2 8529 19 15862215 NM_001082 NP_001073 G/T G185V minus 4328337 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 "by cluster,freq" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23433 rs3093153 CYP4F2 8529 19 15862215 NM_001082 NP_001073 G/T G185V minus 4328337 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23434 rs3093153 CYP4F2 8529 19 15862215 NM_001082 NP_001073 G/T G185V minus 24690346 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23435 rs3093153 CYP4F2 8529 19 15862215 NM_001082 NP_001073 G/T G185V minus 24690346 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23436 rs3093153 CYP4F2 8529 19 15862215 NM_001082 NP_001073 G/T G185V minus 24690346 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23437 rs3093200 CYP4F2 8529 19 15850589 NM_001082 NP_001073 A/C L519M minus 4328386 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.17 103 by freq 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23438 rs3093200 CYP4F2 8529 19 15850589 NM_001082 NP_001073 A/C L519M minus 4328386 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.07 103 by freq 19pter-p13.11 "cytochrome P450, family 4, subfamily F, polypeptide 2" 23439 rs3093248 F7 2155 13 112821255 NM_000131 NP_000122 A/G E445K plus 4328444 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 119 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 23440 rs3093248 F7 2155 13 112821255 NM_000131 NP_000122 A/G E445K plus 14866747 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 119 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 23441 rs3093248 F7 2155 13 112821255 NM_019616 NP_062562 A/G E423K plus 4328444 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 119 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 23442 rs3093248 F7 2155 13 112821255 NM_019616 NP_062562 A/G E423K plus 14866747 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 119 "by cluster,freq" 13q34 coagulation factor VII (serum prothrombin conversion accelerator) 23443 rs3093385 IL21R 50615 16 27367442 NM_021798 NP_068570 C/G S318R plus 4328592 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 103 by freq 16p11 interleukin 21 receptor 23444 rs3093385 IL21R 50615 16 27367442 NM_181078 NP_851564 C/G S318R plus 4328592 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 103 by freq 16p11 interleukin 21 receptor 23445 rs3093385 IL21R 50615 16 27367442 NM_181079 NP_851565 C/G S318R plus 4328592 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 103 by freq 16p11 interleukin 21 receptor 23446 rs3093386 IL21R 50615 16 27367938 NM_021798 NP_068570 A/G G484S plus 4328593 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.15 123 "by cluster,freq" 16p11 interleukin 21 receptor 23447 rs3093386 IL21R 50615 16 27367938 NM_021798 NP_068570 A/G G484S plus 23384612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23448 rs3093386 IL21R 50615 16 27367938 NM_021798 NP_068570 A/G G484S plus 23384612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by cluster,freq" 16p11 interleukin 21 receptor 23449 rs3093386 IL21R 50615 16 27367938 NM_021798 NP_068570 A/G G484S plus 23384612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23450 rs3093386 IL21R 50615 16 27367938 NM_181078 NP_851564 A/G G484S plus 4328593 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.15 123 "by cluster,freq" 16p11 interleukin 21 receptor 23451 rs3093386 IL21R 50615 16 27367938 NM_181078 NP_851564 A/G G484S plus 23384612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23452 rs3093386 IL21R 50615 16 27367938 NM_181078 NP_851564 A/G G484S plus 23384612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by cluster,freq" 16p11 interleukin 21 receptor 23453 rs3093386 IL21R 50615 16 27367938 NM_181078 NP_851564 A/G G484S plus 23384612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23454 rs3093386 IL21R 50615 16 27367938 NM_181079 NP_851565 A/G G484S plus 4328593 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.15 123 "by cluster,freq" 16p11 interleukin 21 receptor 23455 rs3093386 IL21R 50615 16 27367938 NM_181079 NP_851565 A/G G484S plus 23384612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23456 rs3093386 IL21R 50615 16 27367938 NM_181079 NP_851565 A/G G484S plus 23384612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.16 123 "by cluster,freq" 16p11 interleukin 21 receptor 23457 rs3093386 IL21R 50615 16 27367938 NM_181079 NP_851565 A/G G484S plus 23384612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 16p11 interleukin 21 receptor 23458 rs3093431 IL24 11009 1 203463304 NM_006850 NP_006841 A/G H125R plus 4328650 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 "by cluster,freq" 1q32 interleukin 24 23459 rs3093431 IL24 11009 1 203463304 NM_006850 NP_006841 A/G H125R plus 23703907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 "by cluster,freq" 1q32 interleukin 24 23460 rs3093431 IL24 11009 1 203463304 NM_006850 NP_006841 A/G H125R plus 23703907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "by cluster,freq" 1q32 interleukin 24 23461 rs3093431 IL24 11009 1 203463304 NM_006850 NP_006841 A/G H125R plus 23703907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1q32 interleukin 24 23462 rs3093543 LTA 4049 6 31648736 NM_000595 NP_000586 A/C H51P plus 4328794 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 120 "by cluster,freq" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23463 rs3093543 LTA 4049 6 31648736 NM_000595 NP_000586 A/C H51P plus 4328794 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.15 120 "by cluster,freq" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23464 rs3093543 LTA 4049 6 31648736 NM_000595 NP_000586 A/C H51P plus 6312882 693 EGP_SNPS PDR90 NIHPDR 178 0.03 120 "by cluster,freq" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23465 rs3093543 LTA 4049 6 31648736 NM_000595 NP_000586 A/C H51P plus 16360681 649 FHCRC POPU1 USA (20) 40 0.1 120 "by cluster,freq" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23466 rs3093543 LTA 4049 6 31648736 NM_000595 NP_000586 A/C H51P plus 16360731 649 FHCRC POPU1 USA (20) 40 0.1 120 "by cluster,freq" 6p21.3 "lymphotoxin alpha (TNF superfamily, member 1)" 23467 rs3093554 LTB 4050 6 31657386 NM_002341 NP_002332 A/G G70E minus 4328810 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23468 rs3093554 LTB 4050 6 31657386 NM_002341 NP_002332 A/G G70E minus 23323285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23469 rs3093554 LTB 4050 6 31657386 NM_002341 NP_002332 A/G G70E minus 23323285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23470 rs3093554 LTB 4050 6 31657386 NM_002341 NP_002332 A/G G70E minus 23323285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23471 rs3093554 LTB 4050 6 31657386 NM_009588 NP_033666 A/G G55S minus 4328810 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23472 rs3093554 LTB 4050 6 31657386 NM_009588 NP_033666 A/G G55S minus 23323285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23473 rs3093554 LTB 4050 6 31657386 NM_009588 NP_033666 A/G G55S minus 23323285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23474 rs3093554 LTB 4050 6 31657386 NM_009588 NP_033666 A/G G55S minus 23323285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 "lymphotoxin beta (TNF superfamily, member 3)" 23475 rs3093647 SMP1 23585 1 25414847 NM_014313 NP_055128 C/T A58V plus 4328916 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 103 by freq 1p36.11 small membrane protein 1 23476 rs3093905 ADPRTL2 10038 14 19889067 NM_005484 NP_005475 A/G S112N plus 4329216 693 EGP_SNPS PDR90 NIHPDR 168 0.02 103 by freq 14q11.2-q12 ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2 23477 rs3093906 ADPRTL2 10038 14 19889088 NM_005484 NP_005475 A/G N119S plus 4329217 693 EGP_SNPS PDR90 NIHPDR 168 0.01 103 by freq 14q11.2-q12 ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2 23478 rs3093921 ADPRTL2 10038 14 19892148 NM_005484 NP_005475 A/G D186G plus 4329237 693 EGP_SNPS PDR90 NIHPDR 174 0.01 103 by freq 14q11.2-q12 ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2 23479 rs3096697 EGFL8 80864 6 32242488 NM_030652 NP_085155 C/T R86K minus 24650297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 23480 rs3096697 EGFL8 80864 6 32242488 NM_030652 NP_085155 C/T R86K minus 24650297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 23481 rs3096697 EGFL8 80864 6 32242488 NM_030652 NP_085155 C/T R86K minus 24650297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21.31 "EGF-like-domain, multiple 8" 23482 rs3097675 HLA-DPB1 3115 6 33161618 NM_002121 NP_002112 C/T I244T plus 23718888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 23483 rs3097675 HLA-DPB1 3115 6 33161618 NM_002121 NP_002112 C/T I244T plus 23718888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 23484 rs3097675 HLA-DPB1 3115 6 33161618 NM_002121 NP_002112 C/T I244T plus 23718888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by submitter,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DP beta 1" 23485 rs3098927 WDFY3 23001 4 86033668 NM_014991 NP_055806 A/G S1830F plus 4336188 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 103 HapMap 4q22.1 WD repeat and FYVE domain containing 3 23486 rs3100898 ARF6 382 14 49430511 NM_001663 NP_001654 G/T L103M minus 4338790 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 103 HapMap 7q22.1 ADP-ribosylation factor 6 23487 rs3100906 SDCCAG1 9147 14 49368712 NM_004713 NP_004704 A/T S257C minus 23665705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 14q22 serologically defined colon cancer antigen 1 23488 rs3100906 SDCCAG1 9147 14 49368712 NM_004713 NP_004704 A/T S257C minus 23665705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 14q22 serologically defined colon cancer antigen 1 23489 rs3100906 SDCCAG1 9147 14 49368712 NM_004713 NP_004704 A/T S257C minus 23665705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 14q22 serologically defined colon cancer antigen 1 23490 rs3104233 GZMA 3001 5 54439714 NM_006144 NP_006135 A/G M121T minus 23349387 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5q11-q12 "granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)" 23491 rs3104233 GZMA 3001 5 54439714 NM_006144 NP_006135 A/G M121T minus 23349387 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 5q11-q12 "granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)" 23492 rs3104233 GZMA 3001 5 54439714 NM_006144 NP_006135 A/G M121T minus 23349387 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q11-q12 "granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)" 23493 rs3107275 PHACS 84680 11 44061557 NM_032592 NP_115981 C/T P421L plus 24597866 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,submitter,freq,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 23494 rs3107275 PHACS 84680 11 44061557 NM_032592 NP_115981 C/T P421L plus 24597866 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 23495 rs3107275 PHACS 84680 11 44061557 NM_032592 NP_115981 C/T P421L plus 24597866 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 11p11 1-aminocyclopropane-1-carboxylate synthase 23496 rs3112831 ABCA4 24 1 94256255 NM_000350 NP_000341 A/G H423R minus 24254888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 23497 rs3112831 ABCA4 24 1 94256255 NM_000350 NP_000341 A/G H423R minus 24254888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 23498 rs3112831 ABCA4 24 1 94256255 NM_000350 NP_000341 A/G H423R minus 24254888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,submitter,freq,cluster" 1p22.1-p21 "ATP-binding cassette, sub-family A (ABC1), member 4" 23499 rs3116392 MACF1 23499 1 39459465 NM_012090 NP_036222 A/G T1487A plus 4359080 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 103 HapMap 1p32-p31 microtubule-actin crosslinking factor 1 23500 rs3118635 CRAT 1384 9 128940455 NM_000755 NP_000746 G/T L372M plus 22860627 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 HapMap 9q34.1 carnitine acetyltransferase 23501 rs3118635 CRAT 1384 9 128940455 NM_004003 NP_003994 G/T L351M plus 22860627 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 HapMap 9q34.1 carnitine acetyltransferase 23502 rs3118635 CRAT 1384 9 128940455 NM_144782 NP_659006 G/T L290M plus 22860627 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 HapMap 9q34.1 carnitine acetyltransferase 23503 rs3121478 NRAP 4892 10 115395654 NM_006175 NP_006166 C/T A344T plus 24123425 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23504 rs3121478 NRAP 4892 10 115395654 NM_006175 NP_006166 C/T A344T plus 24123425 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23505 rs3121478 NRAP 4892 10 115395654 NM_006175 NP_006166 C/T A344T plus 24123425 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23506 rs3121478 NRAP 4892 10 115395654 NM_198060 NP_932326 C/T A344T plus 24123425 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23507 rs3121478 NRAP 4892 10 115395654 NM_198060 NP_932326 C/T A344T plus 24123425 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.26 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23508 rs3121478 NRAP 4892 10 115395654 NM_198060 NP_932326 C/T A344T plus 24123425 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23509 rs3123101 SYTL3 94120 6 159155972 XM_087804 XP_087804 A/T L587Q plus 23459163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 23510 rs3123101 SYTL3 94120 6 159155972 XM_087804 XP_087804 A/T L587Q plus 23459163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 23511 rs3123101 SYTL3 94120 6 159155972 XM_087804 XP_087804 A/T L587Q plus 23459163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,submitter,freq,cluster" 6q25.3 synaptotagmin-like 3 23512 rs3125001 NOTCH1 4851 9 136681098 NM_017617 NP_060087 C/T A863T plus 16360575 649 FHCRC POPU1 USA (20) 40 0.4 121 "by doubleHit,freq,cluster" 9q34.3 "Notch homolog 1, translocation-associated (Drosophila)" 23513 rs3125001 NOTCH1 4851 9 136681098 NM_017617 NP_060087 C/T A863T plus 16360576 649 FHCRC POPU1 USA (20) 40 0.4 121 "by doubleHit,freq,cluster" 9q34.3 "Notch homolog 1, translocation-associated (Drosophila)" 23514 rs3125630 SIL 6491 1 47479934 NM_003035 NP_003026 A/G A86V plus 24246172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.47 123 "by doubleHit,submitter,freq,cluster" 1p32 TAL1 (SCL) interrupting locus 23515 rs3125630 SIL 6491 1 47479934 NM_003035 NP_003026 A/G A86V plus 24246172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "by doubleHit,submitter,freq,cluster" 1p32 TAL1 (SCL) interrupting locus 23516 rs3125630 SIL 6491 1 47479934 NM_003035 NP_003026 A/G A86V plus 24246172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.43 123 "by doubleHit,submitter,freq,cluster" 1p32 TAL1 (SCL) interrupting locus 23517 rs3125734 PLEKHK1 219790 10 63628118 NM_145307 NP_660350 C/T H462R plus 24658740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq" 10q21.3 "pleckstrin homology domain containing, family K member 1" 23518 rs3125734 PLEKHK1 219790 10 63628118 NM_145307 NP_660350 C/T H462R plus 24658740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq" 10q21.3 "pleckstrin homology domain containing, family K member 1" 23519 rs3125734 PLEKHK1 219790 10 63628118 NM_145307 NP_660350 C/T H462R plus 24658740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq" 10q21.3 "pleckstrin homology domain containing, family K member 1" 23520 rs3127106 NRAP 4892 10 115395605 NM_006175 NP_006166 C/T Q360R plus 24123421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23521 rs3127106 NRAP 4892 10 115395605 NM_006175 NP_006166 C/T Q360R plus 24123421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23522 rs3127106 NRAP 4892 10 115395605 NM_006175 NP_006166 C/T Q360R plus 24123421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23523 rs3127106 NRAP 4892 10 115395605 NM_198060 NP_932326 C/T Q360R plus 24123421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23524 rs3127106 NRAP 4892 10 115395605 NM_198060 NP_932326 C/T Q360R plus 24123421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23525 rs3127106 NRAP 4892 10 115395605 NM_198060 NP_932326 C/T Q360R plus 24123421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 10q24-q26 nebulin-related anchoring protein 23526 rs3127328 T 6862 6 166542456 NM_003181 NP_003172 C/T G356S plus 23676534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 6q27 "T, brachyury homolog (mouse)" 23527 rs3127328 T 6862 6 166542456 NM_003181 NP_003172 C/T G356S plus 23676534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6q27 "T, brachyury homolog (mouse)" 23528 rs3127328 T 6862 6 166542456 NM_003181 NP_003172 C/T G356S plus 23676534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q27 "T, brachyury homolog (mouse)" 23529 rs3130618 BAT4 7918 6 31740113 NM_033177 NP_149417 A/C R41L plus 23324092 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 4 23530 rs3130618 BAT4 7918 6 31740113 NM_033177 NP_149417 A/C R41L plus 23324092 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 4 23531 rs3130618 BAT4 7918 6 31740113 NM_033177 NP_149417 A/C R41L plus 23324092 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 4 23532 rs3131787 UNQ541 389376 6 31007503 NM_205854 NP_995326 A/G N37S minus 23247607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 6p21.32 GSGL541 23533 rs3131787 UNQ541 389376 6 31007503 NM_205854 NP_995326 A/G N37S minus 23247607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 6p21.32 GSGL541 23534 rs3131787 UNQ541 389376 6 31007503 NM_205854 NP_995326 A/G N37S minus 23247607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.32 GSGL541 23535 rs3132589 MDC1 9656 6 30780412 XM_376479 XP_376479 G/T E1509D minus 4380153 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 6pter-p21.31 mediator of DNA damage checkpoint 1 23536 rs3133166 SCYE1 9255 4 107606848 NM_004757 NP_004748 C/G P79A plus 23911795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q25 "small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)" 23537 rs3133166 SCYE1 9255 4 107606848 NM_004757 NP_004748 C/G P79A plus 23911795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 4q25 "small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)" 23538 rs3133166 SCYE1 9255 4 107606848 NM_004757 NP_004748 C/G P79A plus 23911795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 4q25 "small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)" 23539 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 4384251 693 EGP_SNPS PDR90 NIHPDR 178 0.03 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23540 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 4384251 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23541 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 5586736 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23542 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 5586736 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23543 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 5586736 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23544 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 5586736 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23545 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 5586736 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23546 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 23615691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23547 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 23615691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23548 rs3136025 LIG3 3980 17 30353162 NM_002311 NP_002302 A/G R780H plus 23615691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23549 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 4384251 693 EGP_SNPS PDR90 NIHPDR 178 0.03 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23550 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 4384251 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23551 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 5586736 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23552 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 5586736 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23553 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 5586736 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23554 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 5586736 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23555 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 5586736 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23556 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 23615691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23557 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 23615691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23558 rs3136025 LIG3 3980 17 30353162 NM_013975 NP_039269 A/G R780H plus 23615691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 23559 rs3136422 FSBP 10646 8 95513758 NM_006550 NP_006541 A/G R226K minus 4384703 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.02 103 "HapMap,freq" 8q22.1 fibrinogen silencer binding protein 23560 rs3136422 FSBP 10646 8 95513758 NM_006550 NP_006541 A/G R226K minus 4384703 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 103 "HapMap,freq" 8q22.1 fibrinogen silencer binding protein 23561 rs3136422 FSBP 10646 8 95513758 NM_006550 NP_006541 A/G R226K minus 4384703 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 103 "HapMap,freq" 8q22.1 fibrinogen silencer binding protein 23562 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 649 FHCRC POPU1 USA (20) 40 0.05 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23563 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 901 AFFY AfAm 8 0.13 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23564 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 902 AFFY Caucasian 22 1 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23565 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 903 AFFY Asian 12 1 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23566 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 904 AFFY CEPH 12 1 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23567 rs3136677 CCL13 6357 17 29707671 NM_005408 NP_005399 G/T A5S plus 4385030 905 AFFY PDpanel 48 0.04 103 by freq 17q11.2 chemokine (C-C motif) ligand 13 23568 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 4385180 693 EGP_SNPS PDR90 NIHPDR 168 0.01 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23569 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23570 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23571 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23572 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23573 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23574 rs3136797 POLB 5423 8 42345962 NM_002690 NP_002681 C/G P242R plus 5586843 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 "by cluster,freq" 8p11.2 "polymerase (DNA directed), beta" 23575 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 4385211 693 EGP_SNPS PDR90 NIHPDR 142 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23576 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 4385211 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23577 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 4385211 1303 SEQUENOM CEPH CEPH (92) 93 0.47 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23578 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 5586242 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23579 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 5586242 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23580 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 5586242 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23581 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 5586242 777 SNP500CANCER HISP1 Hispanic (23) 44 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23582 rs3136820 APEX1 328 14 19994994 NM_001641 NP_001632 G/T D148E plus 5586242 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23583 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 4385211 693 EGP_SNPS PDR90 NIHPDR 142 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23584 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 4385211 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23585 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 4385211 1303 SEQUENOM CEPH CEPH (92) 93 0.47 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23586 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 5586242 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23587 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 5586242 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23588 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 5586242 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23589 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 5586242 777 SNP500CANCER HISP1 Hispanic (23) 44 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23590 rs3136820 APEX1 328 14 19994994 NM_080648 NP_542379 G/T D148E plus 5586242 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23591 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 4385211 693 EGP_SNPS PDR90 NIHPDR 142 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23592 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 4385211 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23593 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 4385211 1303 SEQUENOM CEPH CEPH (92) 93 0.47 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23594 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 5586242 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.49 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23595 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 5586242 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23596 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 5586242 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23597 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 5586242 777 SNP500CANCER HISP1 Hispanic (23) 44 0.43 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23598 rs3136820 APEX1 328 14 19994994 NM_080649 NP_542380 G/T D148E plus 5586242 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.46 116 "HapMap,doubleHit,freq,cluster" 14q11.2-q12 APEX nuclease (multifunctional DNA repair enzyme) 1 23599 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 4385231 649 FHCRC POPU1 USA (20) 6 0.05 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23600 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 4385231 649 FHCRC POPU1 USA (20) 38 0.1 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23601 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 4385231 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.19 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23602 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 24139959 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23603 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 24139959 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23604 rs3138038 CCL8 6355 17 29671944 NM_005623 NP_005614 A/C K69Q plus 24139959 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 17q11.2 chemokine (C-C motif) ligand 8 23605 rs3138105 CD1C 911 1 155076084 NM_001765 NP_001756 C/T F300S plus 4385317 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 104 HapMap 1q22-q23 "CD1C antigen, c polypeptide" 23606 rs3138268 DCN 1634 12 90047981 NM_001920 NP_001911 C/T T268M minus 4385508 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 12q13.2 decorin 23607 rs3138268 DCN 1634 12 90047981 NM_001920 NP_001911 C/T T268M minus 22970143 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 123 "by cluster,freq" 12q13.2 decorin 23608 rs3138268 DCN 1634 12 90047981 NM_001920 NP_001911 C/T T268M minus 23356485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23609 rs3138268 DCN 1634 12 90047981 NM_001920 NP_001911 C/T T268M minus 23356485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 12q13.2 decorin 23610 rs3138268 DCN 1634 12 90047981 NM_001920 NP_001911 C/T T268M minus 23356485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23611 rs3138268 DCN 1634 12 90047981 NM_133503 NP_598010 C/T T268M minus 4385508 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 12q13.2 decorin 23612 rs3138268 DCN 1634 12 90047981 NM_133503 NP_598010 C/T T268M minus 22970143 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 123 "by cluster,freq" 12q13.2 decorin 23613 rs3138268 DCN 1634 12 90047981 NM_133503 NP_598010 C/T T268M minus 23356485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23614 rs3138268 DCN 1634 12 90047981 NM_133503 NP_598010 C/T T268M minus 23356485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 12q13.2 decorin 23615 rs3138268 DCN 1634 12 90047981 NM_133503 NP_598010 C/T T268M minus 23356485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23616 rs3138268 DCN 1634 12 90047981 NM_133504 NP_598011 C/T T159M minus 4385508 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 12q13.2 decorin 23617 rs3138268 DCN 1634 12 90047981 NM_133504 NP_598011 C/T T159M minus 22970143 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 123 "by cluster,freq" 12q13.2 decorin 23618 rs3138268 DCN 1634 12 90047981 NM_133504 NP_598011 C/T T159M minus 23356485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23619 rs3138268 DCN 1634 12 90047981 NM_133504 NP_598011 C/T T159M minus 23356485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 12q13.2 decorin 23620 rs3138268 DCN 1634 12 90047981 NM_133504 NP_598011 C/T T159M minus 23356485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23621 rs3138268 DCN 1634 12 90047981 NM_133505 NP_598012 C/T T121M minus 4385508 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "by cluster,freq" 12q13.2 decorin 23622 rs3138268 DCN 1634 12 90047981 NM_133505 NP_598012 C/T T121M minus 22970143 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.1 123 "by cluster,freq" 12q13.2 decorin 23623 rs3138268 DCN 1634 12 90047981 NM_133505 NP_598012 C/T T121M minus 23356485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23624 rs3138268 DCN 1634 12 90047981 NM_133505 NP_598012 C/T T121M minus 23356485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 12q13.2 decorin 23625 rs3138268 DCN 1634 12 90047981 NM_133505 NP_598012 C/T T121M minus 23356485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12q13.2 decorin 23626 rs3138505 GADD45G 10912 9 89450314 NM_006705 NP_006696 A/G G112S plus 4387007 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 "by cluster,freq" 9q22.1-q22.2 "growth arrest and DNA-damage-inducible, gamma" 23627 rs3138505 GADD45G 10912 9 89450314 NM_006705 NP_006696 A/G G112S plus 23448561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 1 123 "by cluster,freq" 9q22.1-q22.2 "growth arrest and DNA-damage-inducible, gamma" 23628 rs3138505 GADD45G 10912 9 89450314 NM_006705 NP_006696 A/G G112S plus 23448561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 9q22.1-q22.2 "growth arrest and DNA-damage-inducible, gamma" 23629 rs3138505 GADD45G 10912 9 89450314 NM_006705 NP_006696 A/G G112S plus 23448561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 9q22.1-q22.2 "growth arrest and DNA-damage-inducible, gamma" 23630 rs3169983 SERPINB8 5271 18 59805277 NM_002640 NP_002631 A/G T304A plus 4930965 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23631 rs3169983 SERPINB8 5271 18 59805277 NM_002640 NP_002631 A/G T304A plus 4930965 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23632 rs3169983 SERPINB8 5271 18 59805277 NM_002640 NP_002631 A/G T304A plus 23532862 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23633 rs3169983 SERPINB8 5271 18 59805277 NM_002640 NP_002631 A/G T304A plus 23532862 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23634 rs3169983 SERPINB8 5271 18 59805277 NM_002640 NP_002631 A/G T304A plus 23532862 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23635 rs3169983 SERPINB8 5271 18 59805277 NM_198833 NP_942130 A/G T304A plus 4930965 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23636 rs3169983 SERPINB8 5271 18 59805277 NM_198833 NP_942130 A/G T304A plus 4930965 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23637 rs3169983 SERPINB8 5271 18 59805277 NM_198833 NP_942130 A/G T304A plus 23532862 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23638 rs3169983 SERPINB8 5271 18 59805277 NM_198833 NP_942130 A/G T304A plus 23532862 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23639 rs3169983 SERPINB8 5271 18 59805277 NM_198833 NP_942130 A/G T304A plus 23532862 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,submitter,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 23640 rs3170216 PSG4 5672 19 48400085 NM_002780 NP_002771 C/G L75V minus 16805714 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 19q13.2 pregnancy specific beta-1-glycoprotein 4 23641 rs3170216 PSG4 5672 19 48400085 NM_213633 NP_998798 C/G L75V minus 16805714 1303 SEQUENOM CEPH CEPH (92) 92 0.08 121 "by doubleHit,freq,cluster" 19q13.2 pregnancy specific beta-1-glycoprotein 4 23642 rs3173833 LR8 28959 7 149928732 NM_014020 NP_054739 A/C S94R minus 20309077 1303 SEQUENOM CEPH CEPH (92) 92 0.42 121 "by doubleHit,freq,cluster" 7q36.1 LR8 protein 23643 rs3174720 TRIM16 10626 17 15472872 NM_006470 NP_006461 C/T R493W minus 24820442 1303 SEQUENOM CEPH CEPH (92) 184 0.31 123 by freq 17p11.2 tripartite motif-containing 16 23644 rs3176311 TAF10 6881 11 6589583 NM_006284 NP_006275 C/T I92T minus 4388458 693 EGP_SNPS PDR90 NIHPDR 168 0.01 105 by freq 11p15.3 "TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa" 23645 rs3176750 XPA 7507 9 97517344 NM_000380 NP_000371 C/G L252V minus 4390360 693 EGP_SNPS PDR90 NIHPDR 174 0.01 105 "HapMap,freq" 9q22.3 "xeroderma pigmentosum, complementation group A" 23646 rs3176750 XPA 7507 9 97517344 NM_000380 NP_000371 C/G L252V minus 4390360 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 105 "HapMap,freq" 9q22.3 "xeroderma pigmentosum, complementation group A" 23647 rs3176798 CD69 969 12 9799053 NM_001781 NP_001772 A/G E87K minus 4390409 649 FHCRC POPU1 USA (20) 40 0.03 105 HapMap 12p13-p12 "CD69 antigen (p60, early T-cell activation antigen)" 23648 rs3176798 CD69 969 12 9799053 NM_001781 NP_001772 A/G E87K minus 4390409 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 105 HapMap 12p13-p12 "CD69 antigen (p60, early T-cell activation antigen)" 23649 rs3176975 APOH 350 17 61641219 NM_000042 NP_000033 G/T V266L minus 9807040 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 23 0.5 123 "by submitter,freq,cluster" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 23650 rs3176975 APOH 350 17 61641219 NM_000042 NP_000033 G/T V266L minus 9807040 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.26 123 "by submitter,freq,cluster" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 23651 rs3176975 APOH 350 17 61641219 NM_000042 NP_000033 G/T V266L minus 23636032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by submitter,freq,cluster" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 23652 rs3176975 APOH 350 17 61641219 NM_000042 NP_000033 G/T V266L minus 23636032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by submitter,freq,cluster" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 23653 rs3176975 APOH 350 17 61641219 NM_000042 NP_000033 G/T V266L minus 23636032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by submitter,freq,cluster" 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 23654 rs3177168 MRPS35 60488 12 27758994 NM_021821 NP_068593 A/G G43R plus 4391502 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 12p11 mitochondrial ribosomal protein S35 23655 rs3177168 MRPS35 60488 12 27758994 NM_021821 NP_068593 A/G G43R plus 24137408 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 12p11 mitochondrial ribosomal protein S35 23656 rs3177168 MRPS35 60488 12 27758994 NM_021821 NP_068593 A/G G43R plus 24137408 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 12p11 mitochondrial ribosomal protein S35 23657 rs3177168 MRPS35 60488 12 27758994 NM_021821 NP_068593 A/G G43R plus 24137408 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 12p11 mitochondrial ribosomal protein S35 23658 rs3177253 PECI 10455 6 4078854 NM_006117 NP_006108 A/G M17I minus 22454455 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 by freq 6p24.3 "peroxisomal D3,D2-enoyl-CoA isomerase" 23659 rs3177427 GSTZ1 2954 14 76862960 NM_145870 NP_665877 A/G E32K plus 8830027 693 EGP_SNPS PDR90 NIHPDR 166 0.3 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23660 rs3177427 GSTZ1 2954 14 76862960 NM_145870 NP_665877 A/G E32K plus 24129594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23661 rs3177427 GSTZ1 2954 14 76862960 NM_145870 NP_665877 A/G E32K plus 24129594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23662 rs3177427 GSTZ1 2954 14 76862960 NM_145870 NP_665877 A/G E32K plus 24129594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23663 rs3177427 GSTZ1 2954 14 76862960 NM_145871 NP_665878 A/G E32K plus 8830027 693 EGP_SNPS PDR90 NIHPDR 166 0.3 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23664 rs3177427 GSTZ1 2954 14 76862960 NM_145871 NP_665878 A/G E32K plus 24129594 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23665 rs3177427 GSTZ1 2954 14 76862960 NM_145871 NP_665878 A/G E32K plus 24129594 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23666 rs3177427 GSTZ1 2954 14 76862960 NM_145871 NP_665878 A/G E32K plus 24129594 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23667 rs3177429 GSTZ1 2954 14 76862990 NM_145870 NP_665877 A/G G42R plus 8830028 693 EGP_SNPS PDR90 NIHPDR 166 0.05 117 "by submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23668 rs3177429 GSTZ1 2954 14 76862990 NM_145871 NP_665878 A/G G42R plus 8830028 693 EGP_SNPS PDR90 NIHPDR 166 0.05 117 "by submitter,freq,cluster" 14q24.3 glutathione transferase zeta 1 (maleylacetoacetate isomerase) 23669 rs3177459 SLC2A4RG 56731 20 61844151 NM_020062 NP_064446 G/T E233D plus 8309960 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,freq,cluster" 20q13.33 SLC2A4 regulator 23670 rs3177459 SLC2A4RG 56731 20 61844151 NM_020062 NP_064446 G/T E233D plus 24796618 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 "HapMap,doubleHit,freq,cluster" 20q13.33 SLC2A4 regulator 23671 rs3177483 THUMPD3 25917 3 9401224 NM_015453 NP_056268 A/G R459Q plus 5002820 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.1 108 "by submitter,freq,cluster" 3p25.3 THUMP domain containing 3 23672 rs3177483 THUMPD3 25917 3 9401224 NM_015453 NP_056268 A/G R459Q plus 5002820 1303 SEQUENOM CEPH CEPH (92) 92 0.29 108 "by submitter,freq,cluster" 3p25.3 THUMP domain containing 3 23673 rs3177751 ETFB 2109 19 56542102 NM_001985 NP_001976 C/T T154M minus 12470968 1303 SEQUENOM CEPH CEPH (92) 92 0.21 121 "by doubleHit,freq,cluster" 19q13.3 "electron-transfer-flavoprotein, beta polypeptide" 23674 rs3177979 OAS1 4938 12 111819929 NM_016816 NP_058132 A/G A352T plus 24415240 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,submitter,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 23675 rs3177979 OAS1 4938 12 111819929 NM_016816 NP_058132 A/G A352T plus 24415240 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,submitter,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 23676 rs3177979 OAS1 4938 12 111819929 NM_016816 NP_058132 A/G A352T plus 24415240 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 23677 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 6904124 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.19 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23678 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 6904124 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.26 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23679 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 6904124 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23680 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 24266135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23681 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 24266135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23682 rs3177980 SELL 6402 1 166408144 NM_000655 NP_000646 C/T F193L minus 24266135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 23683 rs3178010 IRF7 3665 11 603208 NM_001572 NP_001563 A/G Q412R minus 19191115 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 11p15.5 interferon regulatory factor 7 23684 rs3178010 IRF7 3665 11 603208 NM_004029 NP_004020 A/G Q383R minus 19191115 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 11p15.5 interferon regulatory factor 7 23685 rs3178010 IRF7 3665 11 603208 NM_004031 NP_004022 A/G Q425R minus 19191115 1303 SEQUENOM CEPH CEPH (92) 92 0.3 121 "by doubleHit,freq,cluster" 11p15.5 interferon regulatory factor 7 23686 rs3178152 TNFAIP2 7127 14 102663703 NM_006291 NP_006282 C/G Q282E plus 4969457 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.5 120 "HapMap,freq,cluster" 14q32 "tumor necrosis factor, alpha-induced protein 2" 23687 rs3178152 TNFAIP2 7127 14 102663703 NM_006291 NP_006282 C/G Q282E plus 8486517 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 16 0.5 120 "HapMap,freq,cluster" 14q32 "tumor necrosis factor, alpha-induced protein 2" 23688 rs3178152 TNFAIP2 7127 14 102663703 NM_006291 NP_006282 C/G Q282E plus 8486517 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.48 120 "HapMap,freq,cluster" 14q32 "tumor necrosis factor, alpha-induced protein 2" 23689 rs3178152 TNFAIP2 7127 14 102663703 NM_006291 NP_006282 C/G Q282E plus 8486517 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 120 "HapMap,freq,cluster" 14q32 "tumor necrosis factor, alpha-induced protein 2" 23690 rs3178259 FBXO5 26271 6 153384423 NM_012177 NP_036309 C/T R445X minus 24812254 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 6q25-q26 F-box protein 5 23691 rs3179861 DDX5 1655 17 59927132 NM_004396 NP_004387 G/T S480A minus 4400893 1303 SEQUENOM CEPH CEPH (92) 92 0.07 105 by freq 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 23692 rs3179969 SPATA7 55812 14 87932282 NM_018418 NP_060888 A/G V74M plus 23645632 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 23693 rs3179969 SPATA7 55812 14 87932282 NM_018418 NP_060888 A/G V74M plus 23645632 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 23694 rs3179969 SPATA7 55812 14 87932282 NM_018418 NP_060888 A/G V74M plus 23645632 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 23695 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 11011551 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23696 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 11011551 1303 SEQUENOM CEPH CEPH (92) 91 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23697 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 24130529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23698 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 24130529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23699 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 24130529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23700 rs3180098 KDELR3 11015 22 37201961 NM_006855 NP_006846 G/T V199G plus 28447194 914 HG_BONN_CNS_SNPS EURO96 European 122 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23701 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 11011551 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23702 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 11011551 1303 SEQUENOM CEPH CEPH (92) 91 0.35 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23703 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 24130529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23704 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 24130529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23705 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 24130529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23706 rs3180098 KDELR3 11015 22 37201961 NM_016657 NP_057839 G/T V199G plus 28447194 914 HG_BONN_CNS_SNPS EURO96 European 122 0.45 123 "HapMap,doubleHit,submitter,freq,cluster" 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 23707 rs3180227 SERPINB3 6317 18 59473992 NM_006919 NP_008850 C/G G351A minus 4401666 1303 SEQUENOM CEPH CEPH (92) 92 0.13 105 "by doubleHit,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3" 23708 rs3180408 USP18 11274 22 17025236 NM_017414 NP_059110 C/T T169M plus 8286364 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 22q11.21 ubiquitin specific protease 18 23709 rs3180408 USP18 11274 22 17025236 NM_017414 NP_059110 C/T T169M plus 23787905 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 22q11.21 ubiquitin specific protease 18 23710 rs3180408 USP18 11274 22 17025236 NM_017414 NP_059110 C/T T169M plus 23787905 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 22q11.21 ubiquitin specific protease 18 23711 rs3180408 USP18 11274 22 17025236 NM_017414 NP_059110 C/T T169M plus 23787905 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 22q11.21 ubiquitin specific protease 18 23712 rs3181179 CASP5 838 11 104379251 NM_004347 NP_004338 A/G R152H minus 4402959 649 FHCRC POPU1 USA (20) 40 0.05 123 "HapMap,submitter,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23713 rs3181179 CASP5 838 11 104379251 NM_004347 NP_004338 A/G R152H minus 4402959 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,submitter,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23714 rs3181179 CASP5 838 11 104379251 NM_004347 NP_004338 A/G R152H minus 23573591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,submitter,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23715 rs3181179 CASP5 838 11 104379251 NM_004347 NP_004338 A/G R152H minus 23573591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,submitter,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23716 rs3181179 CASP5 838 11 104379251 NM_004347 NP_004338 A/G R152H minus 23573591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,submitter,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23717 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 4403101 649 FHCRC POPU1 USA (20) 40 0.08 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23718 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 12165670 901 AFFY AfAm 12 0.42 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23719 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 12165670 902 AFFY Caucasian 24 1 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23720 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 12165670 903 AFFY Asian 12 1 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23721 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 12165670 904 AFFY CEPH 12 1 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23722 rs3181320 CASP5 838 11 104384838 NM_004347 NP_004338 C/G F13L minus 12165670 905 AFFY PDpanel 48 0.04 116 "by doubleHit,freq,cluster" 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23723 rs3181326 CASP5 838 11 104378033 NM_004347 NP_004338 C/G V201L minus 4403108 649 FHCRC POPU1 USA (20) 38 0.05 105 by freq 11q22.2-q22.3 "caspase 5, apoptosis-related cysteine protease" 23724 rs3182535 PITRM1 10531 10 3190292 NM_014889 NP_055704 C/T A397V minus 5374954 1303 SEQUENOM CEPH CEPH (92) 92 0.25 123 "by doubleHit,submitter,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 23725 rs3182535 PITRM1 10531 10 3190292 NM_014889 NP_055704 C/T A397V minus 23542079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,submitter,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 23726 rs3182535 PITRM1 10531 10 3190292 NM_014889 NP_055704 C/T A397V minus 23542079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 23727 rs3182535 PITRM1 10531 10 3190292 NM_014889 NP_055704 C/T A397V minus 23542079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,submitter,freq,cluster" 10p15.3 pitrilysin metalloproteinase 1 23728 rs3184504 LNK 10019 12 110347328 NM_005475 NP_005466 C/T W262R plus 6574914 1303 SEQUENOM CEPH CEPH (92) 92 0.34 123 "by doubleHit,freq,cluster" 12q24 lymphocyte adaptor protein 23729 rs3184504 LNK 10019 12 110347328 NM_005475 NP_005466 C/T W262R plus 24356019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 12q24 lymphocyte adaptor protein 23730 rs3184504 LNK 10019 12 110347328 NM_005475 NP_005466 C/T W262R plus 24356019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 12q24 lymphocyte adaptor protein 23731 rs3184504 LNK 10019 12 110347328 NM_005475 NP_005466 C/T W262R plus 24356019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 12q24 lymphocyte adaptor protein 23732 rs3188055 INPP5F 22876 10 121576872 NM_014937 NP_055752 A/G N997D plus 5011309 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.18 121 "by cluster,freq" 10q26.13 inositol polyphosphate-5-phosphatase F 23733 rs3188055 INPP5F 22876 10 121576872 NM_014937 NP_055752 A/G N997D plus 20716435 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 "by cluster,freq" 10q26.13 inositol polyphosphate-5-phosphatase F 23734 rs3188322 CST1 1469 20 23676474 NM_001898 NP_001889 A/T K135N minus 4412787 1303 SEQUENOM CEPH CEPH (92) 92 0.25 105 by freq 20p11.21 cystatin SN 23735 rs3189030 NRAP 4892 10 115383919 NM_006175 NP_006166 C/T S455L minus 15784753 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 23736 rs3189030 NRAP 4892 10 115383919 NM_198060 NP_932326 C/T S490L minus 15784753 1303 SEQUENOM CEPH CEPH (92) 92 0.19 120 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 23737 rs3190103 HCCR1 25875 12 49729211 NM_015416 NP_056231 A/G V84I plus 11046295 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 cervical cancer 1 protooncogene 23738 rs3190103 HCCR1 25875 12 49729211 NM_015416 NP_056231 A/G V84I plus 23404206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 cervical cancer 1 protooncogene 23739 rs3190103 HCCR1 25875 12 49729211 NM_015416 NP_056231 A/G V84I plus 23404206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 cervical cancer 1 protooncogene 23740 rs3190103 HCCR1 25875 12 49729211 NM_015416 NP_056231 A/G V84I plus 23404206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,submitter,freq,cluster" 12q13.13 cervical cancer 1 protooncogene 23741 rs3192149 TOPBP1 11073 3 134851060 NM_007027 NP_008958 A/C K370Q minus 10069328 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,submitter,freq,cluster" 3q22.1 topoisomerase (DNA) II binding protein 23742 rs3192149 TOPBP1 11073 3 134851060 NM_007027 NP_008958 A/C K370Q minus 23915201 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,submitter,freq,cluster" 3q22.1 topoisomerase (DNA) II binding protein 23743 rs3192149 TOPBP1 11073 3 134851060 NM_007027 NP_008958 A/C K370Q minus 23915201 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,submitter,freq,cluster" 3q22.1 topoisomerase (DNA) II binding protein 23744 rs3192149 TOPBP1 11073 3 134851060 NM_007027 NP_008958 A/C K370Q minus 23915201 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,submitter,freq,cluster" 3q22.1 topoisomerase (DNA) II binding protein 23745 rs3192151 TOPBP1 11073 3 134818781 NM_007027 NP_008958 A/C H1140P minus 4417612 1303 SEQUENOM CEPH CEPH (92) 92 0.04 105 by freq 3q22.1 topoisomerase (DNA) II binding protein 23746 rs3192723 MTRF1L 54516 6 153407809 NM_019041 NP_061914 A/G V214I minus 4985516 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.14 120 "by doubleHit,freq,cluster" 6q25-q26 mitochondrial translational release factor 1-like 23747 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 16336738 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.39 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23748 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 16336738 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.32 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23749 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 16336738 1303 SEQUENOM CEPH CEPH (92) 92 0.29 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23750 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 23289765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23751 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 23289765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23752 rs3194051 IL7R 3575 5 35912031 NM_002185 NP_002176 A/G I356V plus 23289765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by submitter,freq,cluster" 5p13 interleukin 7 receptor 23753 rs3195676 AMACR 23600 5 34043857 NM_014324 NP_055139 A/G V9M minus 10213712 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23754 rs3195676 AMACR 23600 5 34043857 NM_203382 NP_976316 A/G V9M minus 10213712 1303 SEQUENOM CEPH CEPH (92) 92 0.43 121 "by doubleHit,freq,cluster" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23755 rs3195678 AMACR 23600 5 34025322 NM_014324 NP_055139 C/T M261T minus 12675259 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 "by cluster,freq" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23756 rs3195678 AMACR 23600 5 34025322 NM_014324 NP_055139 C/T M261T minus 12675259 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 "by cluster,freq" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23757 rs3195678 AMACR 23600 5 34025322 NM_014324 NP_055139 C/T M261T minus 12675259 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 118 "by cluster,freq" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23758 rs3195678 AMACR 23600 5 34025322 NM_014324 NP_055139 C/T M261T minus 12675259 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23759 rs3195678 AMACR 23600 5 34025322 NM_014324 NP_055139 C/T M261T minus 12675259 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 5p13.2-q11.1 alpha-methylacyl-CoA racemase 23760 rs3197999 MST1 4485 3 49696536 NM_020998 NP_066278 C/T R689C minus 21974381 1303 SEQUENOM CEPH CEPH (92) 92 0.19 121 by freq 3p21 macrophage stimulating 1 (hepatocyte growth factor-like) 23761 rs3198831 PSG6 5675 19 48112291 NM_002782 NP_002773 C/G H85D minus 4426952 1303 SEQUENOM CEPH CEPH (92) 92 0.25 105 "by doubleHit,freq" 19q13.2 pregnancy specific beta-1-glycoprotein 6 23762 rs3200107 HLA-A 3105 6 30018560 NM_002116 NP_002107 A/C R41S plus 24797195 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 6p21.3 "major histocompatibility complex, class I, A" 23763 rs3200156 HLA-A 3105 6 30018740 NM_002116 NP_002107 A/G D101N plus 24798360 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class I, A" 23764 rs3204145 IKBKAP 8518 9 108731175 NM_003640 NP_003631 A/T C1072S minus 14367338 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 23765 rs3204145 IKBKAP 8518 9 108731175 NM_003640 NP_003631 A/T C1072S minus 23784430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 23766 rs3204145 IKBKAP 8518 9 108731175 NM_003640 NP_003631 A/T C1072S minus 23784430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 23767 rs3204145 IKBKAP 8518 9 108731175 NM_003640 NP_003631 A/T C1072S minus 23784430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "HapMap,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 23768 rs3204504 ALB 213 4 74641092 NM_000477 NP_000468 C/T A215V plus 4434276 1303 SEQUENOM CEPH CEPH (92) 92 0.03 105 by freq 4q11-q13 albumin 23769 rs3204853 NDUFAF1 51103 15 39476458 NM_016013 NP_057097 G/T R31L minus 17538163 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,freq,cluster" 15q11.2-q21.3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" 23770 rs3204853 NDUFAF1 51103 15 39476458 NM_016013 NP_057097 G/T R31L minus 17538163 1303 SEQUENOM CEPH CEPH (92) 92 0.1 120 "HapMap,freq,cluster" 15q11.2-q21.3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" 23771 rs3204953 REV3L 5980 6 111735319 NM_002912 NP_002903 A/G V2986I minus 4434794 1303 SEQUENOM CEPH CEPH (92) 92 1 106 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23772 rs3204953 REV3L 5980 6 111735319 NM_002912 NP_002903 A/G V2986I minus 4479756 506 NCBI NIHPDR NIHPDR 158 0.04 106 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23773 rs3205421 CHPT1 56994 12 100610813 NM_020244 NP_064629 C/T F162S plus 16596920 1303 SEQUENOM CEPH CEPH (92) 92 0.28 120 "by doubleHit,freq,cluster" 12q choline phosphotransferase 1 23774 rs3205537 PDZRN3 23024 3 73516059 XM_041363 XP_041363 C/T A880V minus 21887288 1303 SEQUENOM CEPH CEPH (92) 92 0.17 121 "by cluster,freq" 3p14.1 PDZ domain containing RING finger 3 23775 rs3206824 DKK3 27122 11 11942637 NM_013253 NP_037385 A/G R335G minus 10681889 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23776 rs3206824 DKK3 27122 11 11942637 NM_013253 NP_037385 A/G R335G minus 23574960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23777 rs3206824 DKK3 27122 11 11942637 NM_013253 NP_037385 A/G R335G minus 23574960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23778 rs3206824 DKK3 27122 11 11942637 NM_013253 NP_037385 A/G R335G minus 23574960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23779 rs3206824 DKK3 27122 11 11942637 NM_015881 NP_056965 A/G R335G minus 10681889 1303 SEQUENOM CEPH CEPH (92) 92 0.21 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23780 rs3206824 DKK3 27122 11 11942637 NM_015881 NP_056965 A/G R335G minus 23574960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23781 rs3206824 DKK3 27122 11 11942637 NM_015881 NP_056965 A/G R335G minus 23574960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23782 rs3206824 DKK3 27122 11 11942637 NM_015881 NP_056965 A/G R335G minus 23574960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 11p15.2 dickkopf homolog 3 (Xenopus laevis) 23783 rs3207090 FLVCR 28982 1 209456990 NM_014053 NP_054772 C/T T544M plus 15720718 1303 SEQUENOM CEPH CEPH (92) 92 0.44 121 "by doubleHit,freq,cluster" 1q32.3 feline leukemia virus subgroup C cellular receptor 23784 rs3208212 ZNF224 7767 19 49303306 NM_013398 NP_037530 A/G S385P minus 4438577 1303 SEQUENOM CEPH CEPH (92) 92 0.06 105 by freq 19q13.2 zinc finger protein 224 23785 rs3208856 CBLC 23624 19 49988646 NM_012116 NP_036248 C/T H405Y plus 4439298 1303 SEQUENOM CEPH CEPH (92) 92 0.07 105 by freq 19q13.2 Cas-Br-M (murine) ecotropic retroviral transforming sequence c 23786 rs3209058 ZNF626 199777 19 20620354 NM_145297 NP_660340 A/C N68H minus 4439537 1303 SEQUENOM CEPH CEPH (92) 92 0.12 105 by freq 19p13.11 zinc finger protein 626 23787 rs3210400 SCLY 51540 2 238772388 NM_016510 NP_057594 A/G A175T plus 4925052 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.28 120 "HapMap,freq,cluster" 2q37.3 selenocysteine lyase 23788 rs3210400 SCLY 51540 2 238772388 NM_016510 NP_057594 A/G A175T plus 16863111 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 120 "HapMap,freq,cluster" 2q37.3 selenocysteine lyase 23789 rs3210583 SH3GLB2 56904 9 128850566 NM_020145 NP_064530 A/G G380D minus 4441278 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 105 HapMap 9q34 SH3-domain GRB2-like endophilin B2 23790 rs3210584 SH3GLB2 56904 9 128850564 NM_020145 NP_064530 A/G N381D minus 4441279 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 105 HapMap 9q34 SH3-domain GRB2-like endophilin B2 23791 rs3210584 SH3GLB2 56904 9 128850564 NM_020145 NP_064530 A/G N381D minus 4441279 1303 SEQUENOM CEPH CEPH (92) 92 1 105 HapMap 9q34 SH3-domain GRB2-like endophilin B2 23792 rs3210908 SIGIRR 59307 11 396483 NM_021805 NP_068577 A/G Q312R minus 10686963 1303 SEQUENOM CEPH CEPH (92) 92 0.44 116 "by doubleHit,freq,cluster" 11p15.5 single Ig IL-1R-related molecule 23793 rs3211371 CYP2B6 1555 19 46214555 NM_000767 NP_000758 C/T R487C plus 16339935 1150 PHARMGKB_SERM PA128770054 200 0.18 123 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 23794 rs3211371 CYP2B6 1555 19 46214555 NM_000767 NP_000758 C/T R487C plus 16339936 1151 PHARMGKB_SERM PA128770358 200 0.02 123 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 23795 rs3211371 CYP2B6 1555 19 46214555 NM_000767 NP_000758 C/T R487C plus 20421520 1244 PHARMGKB_PAAR-SJCRH PA130240278 166 0.1 123 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 23796 rs3211371 CYP2B6 1555 19 46214555 NM_000767 NP_000758 C/T R487C plus 24815467 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 23797 rs3211612 CDK4 1019 12 56431366 NM_000075 NP_000066 A/G R82Q minus 4442433 693 EGP_SNPS PDR90 NIHPDR 180 0.01 105 HapMap 12q14 cyclin-dependent kinase 4 23798 rs3211612 CDK4 1019 12 56431366 NM_000075 NP_000066 A/G R82Q minus 4442433 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 105 HapMap 12q14 cyclin-dependent kinase 4 23799 rs3211772 F10 2159 13 112843317 NM_000504 NP_000495 A/G A152T plus 4442594 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 105 by freq 13q34 coagulation factor X 23800 rs3211772 F10 2159 13 112843317 NM_000504 NP_000495 A/G A152T plus 4442594 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.05 105 by freq 13q34 coagulation factor X 23801 rs3211783 F10 2159 13 112846237 NM_000504 NP_000495 A/G G192R plus 4442605 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 105 by freq 13q34 coagulation factor X 23802 rs3212057 XRCC3 7517 14 103243218 NM_005432 NP_005423 A/G R94H minus 4472428 693 EGP_SNPS PDR90 NIHPDR 156 0.03 105 "HapMap,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 23803 rs3212057 XRCC3 7517 14 103243218 NM_005432 NP_005423 A/G R94H minus 4472428 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 105 "HapMap,freq" 14q32.3 X-ray repair complementing defective repair in Chinese hamster cells 3 23804 rs3212254 RIPK3 11035 14 23875303 NM_006871 NP_006862 A/C P492Q minus 4472638 649 FHCRC POPU1 USA (20) 40 0.05 119 "by doubleHit,freq,cluster" 14q11.2 receptor-interacting serine-threonine kinase 3 23805 rs3212298 PODXL 5420 7 130650994 NM_005397 NP_005388 A/G V326I minus 4472682 713 POLLAK MASTERPLATE1 "North American, South American, European, Asian, African (individuals diagnosed with focal segmental glomerulosclerosis)" 180 0.01 123 "by submitter,freq,cluster" 7q32-q33 podocalyxin-like 23806 rs3212298 PODXL 5420 7 130650994 NM_005397 NP_005388 A/G V326I minus 24048080 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by submitter,freq,cluster" 7q32-q33 podocalyxin-like 23807 rs3212298 PODXL 5420 7 130650994 NM_005397 NP_005388 A/G V326I minus 24048080 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by submitter,freq,cluster" 7q32-q33 podocalyxin-like 23808 rs3212298 PODXL 5420 7 130650994 NM_005397 NP_005388 A/G V326I minus 24048080 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by submitter,freq,cluster" 7q32-q33 podocalyxin-like 23809 rs3212366 MC1R 4157 16 88513753 NM_002386 NP_002377 C/T F196L plus 4472739 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.07 106 by freq 16q24.3 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) 23810 rs3212645 ITGA2 3673 5 52421563 NM_002203 NP_002194 A/C K1127Q plus 4473096 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 106 by freq 5q23-q31 "integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)" 23811 rs3212723 JAK3 3718 19 17815215 NM_000215 NP_000206 A/C P132T minus 4473180 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.13 123 "HapMap,freq,cluster" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23812 rs3212723 JAK3 3718 19 17815215 NM_000215 NP_000206 A/C P132T minus 4473180 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23813 rs3212723 JAK3 3718 19 17815215 NM_000215 NP_000206 A/C P132T minus 23773916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23814 rs3212723 JAK3 3718 19 17815215 NM_000215 NP_000206 A/C P132T minus 23773916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq,cluster" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23815 rs3212723 JAK3 3718 19 17815215 NM_000215 NP_000206 A/C P132T minus 23773916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23816 rs3212805 KLK15 55554 19 56022026 NM_017509 NP_059979 C/T P134L minus 4473268 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 106 by freq 19q13.41 kallikrein 15 23817 rs3212805 KLK15 55554 19 56022026 NM_138563 NP_612630 C/T P134L minus 4473268 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 106 by freq 19q13.41 kallikrein 15 23818 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 4473478 693 EGP_SNPS PDR90 NIHPDR 146 0.27 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23819 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 4473478 1303 SEQUENOM CEPH CEPH (92) 92 0.4 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23820 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 5586501 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.35 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23821 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 5586501 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.23 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23822 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 5586501 776 SNP500CANCER AFR1 African / African-American (24) 48 0.4 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23823 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 5586501 777 SNP500CANCER HISP1 Hispanic (23) 46 0.39 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23824 rs3212986 ASE-1 10849 19 50604576 NM_012099 NP_036231 G/T Q504K minus 5586501 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.41 113 "by cluster,freq" 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23825 rs3212989 ASE-1 10849 19 50603910 NM_012099 NP_036231 C/T T282A minus 4473483 693 EGP_SNPS PDR90 NIHPDR 168 0.02 106 by freq 19q13.3 CD3-epsilon-associated protein; antisense to ERCC-1 23826 rs3213096 IL12B 3593 5 158682907 NM_002187 NP_002178 A/G V33I minus 4473627 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 by freq 5q31.1-q33.1 "interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)" 23827 rs3213096 IL12B 3593 5 158682907 NM_002187 NP_002178 A/G V33I minus 4473627 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 by freq 5q31.1-q33.1 "interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)" 23828 rs3213096 IL12B 3593 5 158682907 NM_002187 NP_002178 A/G V33I minus 23489583 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 5q31.1-q33.1 "interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)" 23829 rs3213096 IL12B 3593 5 158682907 NM_002187 NP_002178 A/G V33I minus 23489583 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 5q31.1-q33.1 "interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)" 23830 rs3213096 IL12B 3593 5 158682907 NM_002187 NP_002178 A/G V33I minus 23489583 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q31.1-q33.1 "interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)" 23831 rs3213173 E2F1 1869 20 31728907 NM_005225 NP_005216 A/G V276M minus 4473742 693 EGP_SNPS PDR90 NIHPDR 176 0.02 106 by freq 20q11.2 E2F transcription factor 1 23832 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 4473760 717 CTC-USP-BRAZIL POP-1 "Brazilian (50 whites, 50 blacks and 50 Asians) (150)" 300 0.4 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23833 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 4954123 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.34 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23834 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 6414337 885 TSC-CSHL HapMap-CEPH-30-trios 106 0.17 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23835 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 23863110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23836 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 23863110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23837 rs3213190 NID 4811 1 232467215 NM_002508 NP_002499 A/G Q1246R minus 23863110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 1q43 nidogen (enactin) 23838 rs3213409 JAK3 3718 19 17806696 NM_000215 NP_000206 A/G V722I minus 4474050 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 40 0.05 106 "HapMap,freq" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23839 rs3213409 JAK3 3718 19 17806696 NM_000215 NP_000206 A/G V722I minus 4474050 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 "HapMap,freq" 19p13.1 "Janus kinase 3 (a protein tyrosine kinase, leukocyte)" 23840 rs3213422 DHODH 1723 16 70600183 NM_001361 NP_001352 A/C K7Q plus 4474067 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.31 123 "HapMap,doubleHit,freq,cluster" 16q22 dihydroorotate dehydrogenase 23841 rs3213422 DHODH 1723 16 70600183 NM_001361 NP_001352 A/C K7Q plus 6607932 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 16q22 dihydroorotate dehydrogenase 23842 rs3213422 DHODH 1723 16 70600183 NM_001361 NP_001352 A/C K7Q plus 24576205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 16q22 dihydroorotate dehydrogenase 23843 rs3213422 DHODH 1723 16 70600183 NM_001361 NP_001352 A/C K7Q plus 24576205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 16q22 dihydroorotate dehydrogenase 23844 rs3213422 DHODH 1723 16 70600183 NM_001361 NP_001352 A/C K7Q plus 24576205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 16q22 dihydroorotate dehydrogenase 23845 rs3213445 CPT1B 1375 22 49305982 NM_004377 NP_004368 A/G I66V minus 4474093 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.34 120 "by cluster,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 23846 rs3213445 CPT1B 1375 22 49305982 NM_152245 NP_689451 A/G I66V minus 4474093 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.34 120 "by cluster,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 23847 rs3213445 CPT1B 1375 22 49305982 NM_152246 NP_689452 A/G I66V minus 4474093 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.34 120 "by cluster,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 23848 rs3213445 CHKB-CPT1B 386593 22 49305982 NM_152247 NP_689453 A/G I66V minus 4474093 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.34 120 "by cluster,freq" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 23849 rs3213502 GRK4 2868 4 3058388 NM_005307 NP_005298 C/T A221T minus 4474181 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 HapMap 4p16.3 G protein-coupled receptor kinase 4 23850 rs3213502 GRK4 2868 4 3058388 NM_182982 NP_892027 C/T A253T minus 4474181 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 HapMap 4p16.3 G protein-coupled receptor kinase 4 23851 rs3213511 RHBDF1 64285 16 52775 NM_022450 NP_071895 A/G R265W plus 4474194 738 YUSUKE JBIC-ALLELE Japanese (752) 730 0.02 106 HapMap 16p13.3 rhomboid family 1 (Drosophila) 23852 rs3213511 RHBDF1 64285 16 52775 NM_022450 NP_071895 A/G R265W plus 4474194 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 16p13.3 rhomboid family 1 (Drosophila) 23853 rs3213542 HELIC1 10973 6 101072727 NM_006828 NP_006819 C/T V1930M plus 4474244 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 120 "by doubleHit,freq,cluster" 6q16 "helicase, ATP binding 1" 23854 rs3213542 HELIC1 10973 6 101072727 NM_006828 NP_006819 C/T V1930M plus 17895515 1303 SEQUENOM CEPH CEPH (92) 92 0.11 120 "by doubleHit,freq,cluster" 6q16 "helicase, ATP binding 1" 23855 rs3213633 MCFP 55972 7 87120990 NM_018843 NP_061331 A/C K186Q minus 4474380 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.07 123 "by cluster,freq" 7q21.13 mitochondrial carrier family protein 23856 rs3213633 MCFP 55972 7 87120990 NM_018843 NP_061331 A/C K186Q minus 24069343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q21.13 mitochondrial carrier family protein 23857 rs3213633 MCFP 55972 7 87120990 NM_018843 NP_061331 A/C K186Q minus 24069343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q21.13 mitochondrial carrier family protein 23858 rs3213633 MCFP 55972 7 87120990 NM_018843 NP_061331 A/C K186Q minus 24069343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 7q21.13 mitochondrial carrier family protein 23859 rs3213746 CEBPZ 10153 2 37370319 NM_005760 NP_005751 C/T P15S minus 4474529 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.37 106 by freq 2p22.3 CCAAT/enhancer binding protein zeta 23860 rs3213760 LRP2 4036 2 169864268 NM_004525 NP_004516 A/G R3305H minus 4474547 738 YUSUKE JBIC-ALLELE Japanese (752) 752 0.01 106 by freq 2q24-q31 low density lipoprotein-related protein 2 23861 rs3213764 ATF7IP 55729 12 14478568 NM_018179 NP_060649 A/G K530R plus 4474554 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.36 123 "by doubleHit,freq,cluster" 12p13.2 activating transcription factor 7 interacting protein 23862 rs3213764 ATF7IP 55729 12 14478568 NM_018179 NP_060649 A/G K530R plus 24339064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 12p13.2 activating transcription factor 7 interacting protein 23863 rs3213764 ATF7IP 55729 12 14478568 NM_018179 NP_060649 A/G K530R plus 24339064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12p13.2 activating transcription factor 7 interacting protein 23864 rs3213764 ATF7IP 55729 12 14478568 NM_018179 NP_060649 A/G K530R plus 24339064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 12p13.2 activating transcription factor 7 interacting protein 23865 rs3213770 DGKG 1608 3 187469300 NM_001346 NP_001337 C/T R370W minus 4474561 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 106 by freq 3q27-q28 "diacylglycerol kinase, gamma 90kDa" 23866 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.07 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23867 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 901 AFFY AfAm 12 0.17 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23868 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 902 AFFY Caucasian 22 0.09 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23869 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 903 AFFY Asian 12 0.17 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23870 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 904 AFFY CEPH 10 0.1 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23871 rs3213790 BAZ2B 29994 2 160120349 NM_013450 NP_038478 C/T L226S minus 4474586 905 AFFY PDpanel 46 0.07 106 by freq 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 23872 rs3213826 MRPL32 64983 7 42747854 NM_031903 NP_114109 G/T G64V plus 4474644 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 106 HapMap 7p14 mitochondrial ribosomal protein L32 23873 rs3213826 MRPL32 64983 7 42747854 NM_031903 NP_114109 G/T G64V plus 4474644 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 106 HapMap 7p14 mitochondrial ribosomal protein L32 23874 rs3213831 PZP 5858 12 9208040 NM_002864 NP_002855 C/T N857S plus 4474652 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.47 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23875 rs3213831 PZP 5858 12 9208040 NM_002864 NP_002855 C/T N857S plus 10712467 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23876 rs3213831 PZP 5858 12 9208040 NM_002864 NP_002855 C/T N857S plus 23785253 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23877 rs3213831 PZP 5858 12 9208040 NM_002864 NP_002855 C/T N857S plus 23785253 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23878 rs3213831 PZP 5858 12 9208040 NM_002864 NP_002855 C/T N857S plus 23785253 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23879 rs3213832 PZP 5858 12 9212768 NM_002864 NP_002855 C/T V691M plus 4474654 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.05 120 "HapMap,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23880 rs3213832 PZP 5858 12 9212768 NM_002864 NP_002855 C/T V691M plus 4474654 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 120 "HapMap,freq,cluster" 12p13-p12.2 pregnancy-zone protein 23881 rs3213837 ERBB2IP 55914 5 65357067 NM_018695 NP_061165 A/G S274L minus 4474659 738 YUSUKE JBIC-ALLELE Japanese (752) 1440 0.08 123 by freq 5q13.1 erbb2 interacting protein 23882 rs3213837 ERBB2IP 55914 5 65357067 NM_018695 NP_061165 A/G S274L minus 24316604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 5q13.1 erbb2 interacting protein 23883 rs3213837 ERBB2IP 55914 5 65357067 NM_018695 NP_061165 A/G S274L minus 24316604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5q13.1 erbb2 interacting protein 23884 rs3213837 ERBB2IP 55914 5 65357067 NM_018695 NP_061165 A/G S274L minus 24316604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 5q13.1 erbb2 interacting protein 23885 rs3213971 NCOA6IP 96764 8 56861489 NM_024831 NP_079107 C/T I160V minus 4474851 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.03 123 "HapMap,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 23886 rs3213971 NCOA6IP 96764 8 56861489 NM_024831 NP_079107 C/T I160V minus 4474851 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 23887 rs3213971 NCOA6IP 96764 8 56861489 NM_024831 NP_079107 C/T I160V minus 23573185 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 23888 rs3213971 NCOA6IP 96764 8 56861489 NM_024831 NP_079107 C/T I160V minus 23573185 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 23889 rs3213971 NCOA6IP 96764 8 56861489 NM_024831 NP_079107 C/T I160V minus 23573185 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 23890 rs3214033 TBCD 6904 17 78480352 NM_005993 NP_005984 C/T S923N minus 4474947 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.02 106 by freq 17q25.3 tubulin-specific chaperone d 23891 rs3217921 CCND2 894 12 4279368 NM_001759 NP_001750 A/G G268R plus 4478949 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 HapMap 12p13 cyclin D2 23892 rs3217921 CCND2 894 12 4279368 NM_001759 NP_001750 A/G G268R plus 4478949 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 HapMap 12p13 cyclin D2 23893 rs3218089 CCND3 896 6 42016100 NM_001760 NP_001751 C/T P134S minus 4479154 693 EGP_SNPS PDR90 NIHPDR 176 0.01 106 by freq 6p21 cyclin D3 23894 rs3218170 E2F2 1870 1 23592835 NM_004091 NP_004082 A/G G205R minus 4479249 693 EGP_SNPS PDR90 NIHPDR 174 0.01 106 by freq 1p36 E2F transcription factor 2 23895 rs3218171 E2F2 1870 1 23592770 NM_004091 NP_004082 G/T Q226H minus 4479250 693 EGP_SNPS PDR90 NIHPDR 170 0.4 121 "by doubleHit,freq,cluster" 1p36 E2F transcription factor 2 23896 rs3218273 IL2RB 3560 22 35863008 NM_000878 NP_000869 C/T S83F minus 4479392 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.12 123 "by cluster,freq" 22q13.1 "interleukin 2 receptor, beta" 23897 rs3218273 IL2RB 3560 22 35863008 NM_000878 NP_000869 C/T S83F minus 23665369 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q13.1 "interleukin 2 receptor, beta" 23898 rs3218273 IL2RB 3560 22 35863008 NM_000878 NP_000869 C/T S83F minus 23665369 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 22q13.1 "interleukin 2 receptor, beta" 23899 rs3218273 IL2RB 3560 22 35863008 NM_000878 NP_000869 C/T S83F minus 23665369 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q13.1 "interleukin 2 receptor, beta" 23900 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 4479697 693 EGP_SNPS PDR90 NIHPDR 178 0.05 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23901 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23902 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23903 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23904 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23905 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23906 rs3218536 XRCC2 7516 7 151783655 NM_005431 NP_005422 A/G R188H minus 5586982 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by cluster,freq" 7q36.1 X-ray repair complementing defective repair in Chinese hamster cells 2 23907 rs3218578 REV3L 5980 6 111802401 NM_002912 NP_002903 A/C T1206P minus 4479741 506 NCBI NIHPDR NIHPDR 148 0.02 106 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23908 rs3218595 REV3L 5980 6 111802324 NM_002912 NP_002903 G/T Q1231H minus 4479765 506 NCBI NIHPDR NIHPDR 148 0.03 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23909 rs3218595 REV3L 5980 6 111802324 NM_002912 NP_002903 G/T Q1231H minus 23497071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23910 rs3218595 REV3L 5980 6 111802324 NM_002912 NP_002903 G/T Q1231H minus 23497071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23911 rs3218595 REV3L 5980 6 111802324 NM_002912 NP_002903 G/T Q1231H minus 23497071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23912 rs3218599 REV3L 5980 6 111800817 NM_002912 NP_002903 C/G D1734H minus 4479769 506 NCBI NIHPDR NIHPDR 178 0.02 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23913 rs3218599 REV3L 5980 6 111800817 NM_002912 NP_002903 C/G D1734H minus 24491669 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23914 rs3218599 REV3L 5980 6 111800817 NM_002912 NP_002903 C/G D1734H minus 24491669 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23915 rs3218599 REV3L 5980 6 111800817 NM_002912 NP_002903 C/G D1734H minus 24491669 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23916 rs3218600 REV3L 5980 6 111802592 NM_002912 NP_002903 C/T S1142L minus 4479770 506 NCBI NIHPDR NIHPDR 142 0.05 123 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23917 rs3218600 REV3L 5980 6 111802592 NM_002912 NP_002903 C/T S1142L minus 23497114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23918 rs3218600 REV3L 5980 6 111802592 NM_002912 NP_002903 C/T S1142L minus 23497114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23919 rs3218600 REV3L 5980 6 111802592 NM_002912 NP_002903 C/T S1142L minus 23497114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23920 rs3218606 REV3L 5980 6 111795775 NM_002912 NP_002903 A/G R1892H minus 4479777 506 NCBI NIHPDR NIHPDR 154 0.03 106 by freq 6q21 "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" 23921 rs3218611 TNFRSF6 355 10 90764093 NM_000043 NP_000034 C/T T305I plus 4479784 506 NCBI NIHPDR NIHPDR 174 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23922 rs3218611 TNFRSF6 355 10 90764093 NM_000043 NP_000034 C/T T305I plus 4479784 720 UWGC LupusClinical 94 0.02 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23923 rs3218611 TNFRSF6 355 10 90764093 NM_000043 NP_000034 C/T T305I plus 13453260 693 EGP_SNPS PDR90 NIHPDR 162 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23924 rs3218611 TNFRSF6 355 10 90764093 NM_152871 NP_690610 C/T T284I plus 4479784 506 NCBI NIHPDR NIHPDR 174 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23925 rs3218611 TNFRSF6 355 10 90764093 NM_152871 NP_690610 C/T T284I plus 4479784 720 UWGC LupusClinical 94 0.02 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23926 rs3218611 TNFRSF6 355 10 90764093 NM_152871 NP_690610 C/T T284I plus 13453260 693 EGP_SNPS PDR90 NIHPDR 162 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23927 rs3218614 TNFRSF6 355 10 90758656 NM_000043 NP_000034 C/T T122I plus 4479787 506 NCBI NIHPDR NIHPDR 170 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23928 rs3218614 TNFRSF6 355 10 90758656 NM_000043 NP_000034 C/T T122I plus 4479787 720 UWGC LupusClinical 62 1 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23929 rs3218614 TNFRSF6 355 10 90758656 NM_000043 NP_000034 C/T T122I plus 13453226 693 EGP_SNPS PDR90 NIHPDR 176 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23930 rs3218614 TNFRSF6 355 10 90758656 NM_152871 NP_690610 C/T T122I plus 4479787 506 NCBI NIHPDR NIHPDR 170 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23931 rs3218614 TNFRSF6 355 10 90758656 NM_152871 NP_690610 C/T T122I plus 4479787 720 UWGC LupusClinical 62 1 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23932 rs3218614 TNFRSF6 355 10 90758656 NM_152871 NP_690610 C/T T122I plus 13453226 693 EGP_SNPS PDR90 NIHPDR 176 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23933 rs3218614 TNFRSF6 355 10 90758656 NM_152872 NP_690611 C/T T122I plus 4479787 506 NCBI NIHPDR NIHPDR 170 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23934 rs3218614 TNFRSF6 355 10 90758656 NM_152872 NP_690611 C/T T122I plus 4479787 720 UWGC LupusClinical 62 1 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23935 rs3218614 TNFRSF6 355 10 90758656 NM_152872 NP_690611 C/T T122I plus 13453226 693 EGP_SNPS PDR90 NIHPDR 176 0.01 119 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23936 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23937 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23938 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23939 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23940 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23941 rs3218619 TNFRSF6 355 10 90752781 NM_000043 NP_000034 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23942 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23943 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23944 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23945 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23946 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23947 rs3218619 TNFRSF6 355 10 90752781 NM_152871 NP_690610 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23948 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23949 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23950 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23951 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23952 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23953 rs3218619 TNFRSF6 355 10 90752781 NM_152872 NP_690611 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23954 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23955 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23956 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23957 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23958 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23959 rs3218619 TNFRSF6 355 10 90752781 NM_152873 NP_690612 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23960 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23961 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23962 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23963 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23964 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23965 rs3218619 TNFRSF6 355 10 90752781 NM_152874 NP_690613 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23966 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23967 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23968 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23969 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23970 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23971 rs3218619 TNFRSF6 355 10 90752781 NM_152875 NP_690614 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23972 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23973 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23974 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23975 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23976 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23977 rs3218619 TNFRSF6 355 10 90752781 NM_152876 NP_690615 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23978 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 4479793 506 NCBI NIHPDR NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23979 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 4479793 720 UWGC LupusClinical 88 0.05 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23980 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 13453192 693 EGP_SNPS PDR90 NIHPDR 166 0.06 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23981 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 23574187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23982 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 23574187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23983 rs3218619 TNFRSF6 355 10 90752781 NM_152877 NP_690616 A/G A16T plus 23574187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "tumor necrosis factor receptor superfamily, member 6" 23984 rs3218622 PTGS2 5743 1 183377662 NM_000963 NP_000954 A/G R228H minus 4479797 506 NCBI NIHPDR NIHPDR 66 0.02 121 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23985 rs3218622 PTGS2 5743 1 183377662 NM_000963 NP_000954 A/G R228H minus 6396180 693 EGP_SNPS PDR90 NIHPDR 168 0.01 121 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23986 rs3218625 PTGS2 5743 1 183375198 NM_000963 NP_000954 A/G G587R minus 4479800 506 NCBI NIHPDR NIHPDR 148 0.01 123 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23987 rs3218625 PTGS2 5743 1 183375198 NM_000963 NP_000954 A/G G587R minus 6396202 693 EGP_SNPS PDR90 NIHPDR 170 0.01 123 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23988 rs3218625 PTGS2 5743 1 183375198 NM_000963 NP_000954 A/G G587R minus 23859724 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23989 rs3218625 PTGS2 5743 1 183375198 NM_000963 NP_000954 A/G G587R minus 23859724 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23990 rs3218625 PTGS2 5743 1 183375198 NM_000963 NP_000954 A/G G587R minus 23859724 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 1q25.2-q25.3 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 23991 rs3218632 POLQ 10721 3 122690573 NM_006596 NP_006587 A/G T1434A minus 4479811 506 NCBI NIHPDR NIHPDR 178 0.03 106 by freq 3q13.33 "polymerase (DNA directed), theta" 23992 rs3218632 POLQ 10721 3 122690573 NM_199420 NP_955452 A/G T1301A minus 4479811 506 NCBI NIHPDR NIHPDR 178 0.03 106 by freq 3q13.33 "polymerase (DNA directed), theta" 23993 rs3218634 POLQ 10721 3 122634502 NM_006596 NP_006587 C/G L2673V minus 4479813 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23994 rs3218634 POLQ 10721 3 122634502 NM_006596 NP_006587 C/G L2673V minus 23322088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23995 rs3218634 POLQ 10721 3 122634502 NM_006596 NP_006587 C/G L2673V minus 23322088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23996 rs3218634 POLQ 10721 3 122634502 NM_006596 NP_006587 C/G L2673V minus 23322088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23997 rs3218634 POLQ 10721 3 122634502 NM_199420 NP_955452 C/G L2540V minus 4479813 506 NCBI NIHPDR NIHPDR 178 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23998 rs3218634 POLQ 10721 3 122634502 NM_199420 NP_955452 C/G L2540V minus 23322088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 23999 rs3218634 POLQ 10721 3 122634502 NM_199420 NP_955452 C/G L2540V minus 23322088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24000 rs3218634 POLQ 10721 3 122634502 NM_199420 NP_955452 C/G L2540V minus 23322088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24001 rs3218636 POLQ 10721 3 122691584 NM_006596 NP_006587 A/G S1097G minus 4479815 506 NCBI NIHPDR NIHPDR 158 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24002 rs3218636 POLQ 10721 3 122691584 NM_006596 NP_006587 A/G S1097G minus 24289416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24003 rs3218636 POLQ 10721 3 122691584 NM_006596 NP_006587 A/G S1097G minus 24289416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24004 rs3218636 POLQ 10721 3 122691584 NM_006596 NP_006587 A/G S1097G minus 24289416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24005 rs3218636 POLQ 10721 3 122691584 NM_199420 NP_955452 A/G S964G minus 4479815 506 NCBI NIHPDR NIHPDR 158 0.06 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24006 rs3218636 POLQ 10721 3 122691584 NM_199420 NP_955452 A/G S964G minus 24289416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24007 rs3218636 POLQ 10721 3 122691584 NM_199420 NP_955452 A/G S964G minus 24289416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24008 rs3218636 POLQ 10721 3 122691584 NM_199420 NP_955452 A/G S964G minus 24289416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.33 "polymerase (DNA directed), theta" 24009 rs3218637 POLQ 10721 3 122685035 NM_006596 NP_006587 A/G R2088Q minus 4479816 506 NCBI NIHPDR NIHPDR 178 0.02 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24010 rs3218637 POLQ 10721 3 122685035 NM_199420 NP_955452 A/G R1955Q minus 4479816 506 NCBI NIHPDR NIHPDR 178 0.02 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24011 rs3218640 POLQ 10721 3 122690701 NM_006596 NP_006587 A/G G1391E minus 4479820 506 NCBI NIHPDR NIHPDR 178 0.02 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24012 rs3218640 POLQ 10721 3 122690701 NM_199420 NP_955452 A/G G1258E minus 4479820 506 NCBI NIHPDR NIHPDR 178 0.02 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24013 rs3218642 POLQ 10721 3 122690327 NM_006596 NP_006587 A/C P1516T minus 4479822 506 NCBI NIHPDR NIHPDR 168 0.02 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24014 rs3218642 POLQ 10721 3 122690327 NM_006596 NP_006587 A/C P1516T minus 24289359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24015 rs3218642 POLQ 10721 3 122690327 NM_006596 NP_006587 A/C P1516T minus 24289359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24016 rs3218642 POLQ 10721 3 122690327 NM_006596 NP_006587 A/C P1516T minus 24289359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24017 rs3218642 POLQ 10721 3 122690327 NM_199420 NP_955452 A/C P1383T minus 4479822 506 NCBI NIHPDR NIHPDR 168 0.02 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24018 rs3218642 POLQ 10721 3 122690327 NM_199420 NP_955452 A/C P1383T minus 24289359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24019 rs3218642 POLQ 10721 3 122690327 NM_199420 NP_955452 A/C P1383T minus 24289359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24020 rs3218642 POLQ 10721 3 122690327 NM_199420 NP_955452 A/C P1383T minus 24289359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q13.33 "polymerase (DNA directed), theta" 24021 rs3218643 POLQ 10721 3 122689784 NM_006596 NP_006587 G/T D1697Y minus 4479824 506 NCBI NIHPDR NIHPDR 180 0.01 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24022 rs3218643 POLQ 10721 3 122689784 NM_199420 NP_955452 G/T D1564Y minus 4479824 506 NCBI NIHPDR NIHPDR 180 0.01 106 by freq 3q13.33 "polymerase (DNA directed), theta" 24023 rs3218644 POLQ 10721 3 122690698 NM_006596 NP_006587 A/G D1392G minus 4479825 506 NCBI NIHPDR NIHPDR 178 0.02 106 "HapMap,freq" 3q13.33 "polymerase (DNA directed), theta" 24024 rs3218644 POLQ 10721 3 122690698 NM_006596 NP_006587 A/G D1392G minus 4479825 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 "HapMap,freq" 3q13.33 "polymerase (DNA directed), theta" 24025 rs3218644 POLQ 10721 3 122690698 NM_199420 NP_955452 A/G D1259G minus 4479825 506 NCBI NIHPDR NIHPDR 178 0.02 106 "HapMap,freq" 3q13.33 "polymerase (DNA directed), theta" 24026 rs3218644 POLQ 10721 3 122690698 NM_199420 NP_955452 A/G D1259G minus 4479825 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 "HapMap,freq" 3q13.33 "polymerase (DNA directed), theta" 24027 rs3218649 POLQ 10721 3 122691523 NM_006596 NP_006587 C/G T1117R minus 4479830 506 NCBI NIHPDR NIHPDR 156 0.37 121 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24028 rs3218649 POLQ 10721 3 122691523 NM_006596 NP_006587 C/G T1117R minus 4958186 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.12 121 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24029 rs3218649 POLQ 10721 3 122691523 NM_199420 NP_955452 C/G T984R minus 4479830 506 NCBI NIHPDR NIHPDR 156 0.37 121 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24030 rs3218649 POLQ 10721 3 122691523 NM_199420 NP_955452 C/G T984R minus 4958186 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.12 121 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24031 rs3218651 POLQ 10721 3 122690866 NM_006596 NP_006587 A/G H1336R minus 4479832 506 NCBI NIHPDR NIHPDR 176 0.31 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24032 rs3218651 POLQ 10721 3 122690866 NM_006596 NP_006587 A/G H1336R minus 23878960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24033 rs3218651 POLQ 10721 3 122690866 NM_006596 NP_006587 A/G H1336R minus 23878960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24034 rs3218651 POLQ 10721 3 122690866 NM_006596 NP_006587 A/G H1336R minus 23878960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24035 rs3218651 POLQ 10721 3 122690866 NM_199420 NP_955452 A/G H1203R minus 4479832 506 NCBI NIHPDR NIHPDR 176 0.31 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24036 rs3218651 POLQ 10721 3 122690866 NM_199420 NP_955452 A/G H1203R minus 23878960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24037 rs3218651 POLQ 10721 3 122690866 NM_199420 NP_955452 A/G H1203R minus 23878960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24038 rs3218651 POLQ 10721 3 122690866 NM_199420 NP_955452 A/G H1203R minus 23878960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 3q13.33 "polymerase (DNA directed), theta" 24039 rs3218670 ATM 472 11 107691953 NM_000051 NP_000042 A/G R2034Q plus 4479859 506 NCBI NIHPDR NIHPDR 166 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24040 rs3218670 ATM 472 11 107691953 NM_000051 NP_000042 A/G R2034Q plus 6905068 693 EGP_SNPS PDR90 NIHPDR 148 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24041 rs3218670 ATM 472 11 107691953 NM_138292 NP_612149 A/G R686Q plus 4479859 506 NCBI NIHPDR NIHPDR 166 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24042 rs3218670 ATM 472 11 107691953 NM_138292 NP_612149 A/G R686Q plus 6905068 693 EGP_SNPS PDR90 NIHPDR 148 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24043 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 4479863 506 NCBI NIHPDR NIHPDR 176 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24044 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6903670 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24045 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6903670 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24046 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6903670 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24047 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6903670 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24048 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6903670 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24049 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 6904893 693 EGP_SNPS PDR90 NIHPDR 172 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24050 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 23582746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24051 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 23582746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24052 rs3218673 ATM 472 11 107643255 NM_000051 NP_000042 C/T P872S plus 23582746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24053 rs3218680 ATM 472 11 107711020 NM_000051 NP_000042 A/G G2709S plus 4479872 506 NCBI NIHPDR NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24054 rs3218680 ATM 472 11 107711020 NM_000051 NP_000042 A/G G2709S plus 6905136 693 EGP_SNPS PDR90 NIHPDR 178 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24055 rs3218680 ATM 472 11 107711020 NM_138292 NP_612149 A/G G1361S plus 4479872 506 NCBI NIHPDR NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24056 rs3218680 ATM 472 11 107711020 NM_138292 NP_612149 A/G G1361S plus 6905136 693 EGP_SNPS PDR90 NIHPDR 178 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24057 rs3218684 ATM 472 11 107603773 NM_000051 NP_000042 C/T R45W plus 4479877 506 NCBI NIHPDR NIHPDR 174 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24058 rs3218684 ATM 472 11 107603773 NM_000051 NP_000042 C/T R45W plus 6904782 693 EGP_SNPS PDR90 NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24059 rs3218688 ATM 472 11 107644532 NM_000051 NP_000042 C/T L942F plus 4479883 506 NCBI NIHPDR NIHPDR 174 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24060 rs3218688 ATM 472 11 107644532 NM_000051 NP_000042 C/T L942F plus 6904901 693 EGP_SNPS PDR90 NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24061 rs3218695 ATM 472 11 107634988 NM_000051 NP_000042 A/C D814E plus 4479895 506 NCBI NIHPDR NIHPDR 170 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24062 rs3218695 ATM 472 11 107634988 NM_000051 NP_000042 A/C D814E plus 6904886 693 EGP_SNPS PDR90 NIHPDR 166 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24063 rs3218695 ATM 472 11 107634988 NM_000051 NP_000042 A/C D814E plus 23582718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24064 rs3218695 ATM 472 11 107634988 NM_000051 NP_000042 A/C D814E plus 23582718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24065 rs3218695 ATM 472 11 107634988 NM_000051 NP_000042 A/C D814E plus 23582718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24066 rs3218707 ATM 472 11 107619937 NM_000051 NP_000042 C/G V182L plus 4479916 506 NCBI NIHPDR NIHPDR 178 0.01 106 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24067 rs3218708 ATM 472 11 107644512 NM_000051 NP_000042 C/T T935M plus 4479919 506 NCBI NIHPDR NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24068 rs3218708 ATM 472 11 107644512 NM_000051 NP_000042 C/T T935M plus 6904900 693 EGP_SNPS PDR90 NIHPDR 172 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 24069 rs3218721 CDT1 81620 16 87402156 NM_030928 NP_112190 C/T A537V plus 4479969 506 NCBI NIHPDR NIHPDR 178 0.01 123 "by cluster,freq" 16q24.3 DNA replication factor 24070 rs3218721 CDT1 81620 16 87402156 NM_030928 NP_112190 C/T A537V plus 23779466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16q24.3 DNA replication factor 24071 rs3218721 CDT1 81620 16 87402156 NM_030928 NP_112190 C/T A537V plus 23779466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 16q24.3 DNA replication factor 24072 rs3218721 CDT1 81620 16 87402156 NM_030928 NP_112190 C/T A537V plus 23779466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 16q24.3 DNA replication factor 24073 rs3218750 POLD1 5424 19 55597134 NM_002691 NP_002682 A/G R177H plus 4480017 506 NCBI NIHPDR NIHPDR 158 0.01 108 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24074 rs3218750 POLD1 5424 19 55597134 NM_002691 NP_002682 A/G R177H plus 4480824 693 EGP_SNPS PDR90 NIHPDR 170 0.01 108 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24075 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 4480058 506 NCBI NIHPDR NIHPDR 158 0.01 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24076 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 4480809 693 EGP_SNPS PDR90 NIHPDR 180 0.01 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24077 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 12675596 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24078 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 12675596 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24079 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 12675596 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24080 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 12675596 777 SNP500CANCER HISP1 Hispanic (23) 42 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24081 rs3218772 POLD1 5424 19 55594008 NM_002691 NP_002682 C/T R30W plus 12675596 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24082 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 4480059 506 NCBI NIHPDR NIHPDR 160 0.04 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24083 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 4480808 693 EGP_SNPS PDR90 NIHPDR 180 0.03 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24084 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 12675589 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.02 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24085 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 12675589 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24086 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 12675589 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24087 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 12675589 777 SNP500CANCER HISP1 Hispanic (23) 42 1 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24088 rs3218773 POLD1 5424 19 55593976 NM_002691 NP_002682 A/G R19H plus 12675589 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 118 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24089 rs3218775 POLD1 5424 19 55610041 NM_002691 NP_002682 A/G R849H plus 4480062 506 NCBI NIHPDR NIHPDR 176 0.01 108 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24090 rs3218775 POLD1 5424 19 55610041 NM_002691 NP_002682 A/G R849H plus 4480892 693 EGP_SNPS PDR90 NIHPDR 180 0.02 108 "by cluster,freq" 19q13.3 "polymerase (DNA directed), delta 1, catalytic subunit 125kDa" 24091 rs3218778 POLI 11201 18 50054338 NM_007195 NP_009126 A/G R71G plus 4480070 506 NCBI NIHPDR NIHPDR 172 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24092 rs3218778 POLI 11201 18 50054338 NM_007195 NP_009126 A/G R71G plus 4916669 693 EGP_SNPS PDR90 NIHPDR 156 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24093 rs3218783 POLI 11201 18 50063234 NM_007195 NP_009126 A/G E251K plus 4480076 506 NCBI NIHPDR NIHPDR 178 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24094 rs3218783 POLI 11201 18 50063234 NM_007195 NP_009126 A/G E251K plus 4916708 693 EGP_SNPS PDR90 NIHPDR 160 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24095 rs3218784 POLI 11201 18 50061258 NM_007195 NP_009126 A/G I236M plus 4480078 506 NCBI NIHPDR NIHPDR 180 0.02 108 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24096 rs3218784 POLI 11201 18 50061258 NM_007195 NP_009126 A/G I236M plus 4916703 693 EGP_SNPS PDR90 NIHPDR 174 0.02 108 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24097 rs3218784 POLI 11201 18 50061258 NM_007195 NP_009126 A/G I236M plus 4916703 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 108 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24098 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 4480080 506 NCBI NIHPDR NIHPDR 156 0.01 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24099 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 4916787 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24100 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 4916787 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24101 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 24531260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24102 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 24531260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24103 rs3218786 POLI 11201 18 50074207 NM_007195 NP_009126 C/T F507S plus 24531260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 18q21.1 polymerase (DNA directed) iota 24104 rs3218787 POLI 11201 18 50074290 NM_007195 NP_009126 C/T C535R plus 4480081 506 NCBI NIHPDR NIHPDR 156 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24105 rs3218787 POLI 11201 18 50074290 NM_007195 NP_009126 C/T C535R plus 4916788 693 EGP_SNPS PDR90 NIHPDR 178 0.01 108 "by cluster,freq" 18q21.1 polymerase (DNA directed) iota 24106 rs3218790 POLE2 5427 14 49186903 NM_002692 NP_002683 A/T K443X minus 4480085 506 NCBI NIHPDR NIHPDR 170 0.01 106 "HapMap,freq" 14q21-q22 "polymerase (DNA directed), epsilon 2 (p59 subunit)" 24107 rs3218790 POLE2 5427 14 49186903 NM_002692 NP_002683 A/T K443X minus 4480085 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 106 "HapMap,freq" 14q21-q22 "polymerase (DNA directed), epsilon 2 (p59 subunit)" 24108 rs3219012 OGG1 4968 3 9773270 NM_002542 NP_002533 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24109 rs3219012 OGG1 4968 3 9773270 NM_002542 NP_002533 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24110 rs3219012 OGG1 4968 3 9773270 NM_016819 NP_058212 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24111 rs3219012 OGG1 4968 3 9773270 NM_016819 NP_058212 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24112 rs3219012 OGG1 4968 3 9773270 NM_016820 NP_058213 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24113 rs3219012 OGG1 4968 3 9773270 NM_016820 NP_058213 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24114 rs3219012 OGG1 4968 3 9773270 NM_016821 NP_058214 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24115 rs3219012 OGG1 4968 3 9773270 NM_016821 NP_058214 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24116 rs3219012 OGG1 4968 3 9773270 NM_016828 NP_058437 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24117 rs3219012 OGG1 4968 3 9773270 NM_016828 NP_058437 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24118 rs3219012 OGG1 4968 3 9773270 NM_016829 NP_058438 C/T A288V plus 4480376 693 EGP_SNPS PDR90 NIHPDR 180 0.01 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24119 rs3219012 OGG1 4968 3 9773270 NM_016829 NP_058438 C/T A288V plus 4480376 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 106 "HapMap,freq" 3p26.2 8-oxoguanine DNA glycosylase 24120 rs3219057 ADPRT 142 1 222879951 NM_001618 NP_001609 A/G V334I minus 4480443 693 EGP_SNPS PDR90 NIHPDR 176 0.01 106 by freq 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24121 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 4480554 693 EGP_SNPS PDR90 NIHPDR 176 0.01 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24122 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 7986194 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24123 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 7986194 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24124 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 7986194 776 SNP500CANCER AFR1 African / African-American (24) 48 1 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24125 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 7986194 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24126 rs3219145 ADPRT 142 1 222857564 NM_001618 NP_001609 A/G K940R minus 7986194 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 121 "by cluster,freq" 1q41-q42 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 24127 rs3219156 ALS2 57679 2 202451121 NM_020919 NP_065970 A/G V368M minus 23710214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 2q33.2 amyotrophic lateral sclerosis 2 (juvenile) 24128 rs3219156 ALS2 57679 2 202451121 NM_020919 NP_065970 A/G V368M minus 23710214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 2q33.2 amyotrophic lateral sclerosis 2 (juvenile) 24129 rs3219156 ALS2 57679 2 202451121 NM_020919 NP_065970 A/G V368M minus 23710214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q33.2 amyotrophic lateral sclerosis 2 (juvenile) 24130 rs3219484 MUTYH 4595 1 45469249 NM_012222 NP_036354 A/G V22M minus 4911242 693 EGP_SNPS PDR90 NIHPDR 180 0.02 123 by freq 1p34.3-p32.1 mutY homolog (E. coli) 24131 rs3219484 MUTYH 4595 1 45469249 NM_012222 NP_036354 A/G V22M minus 24607457 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p34.3-p32.1 mutY homolog (E. coli) 24132 rs3219484 MUTYH 4595 1 45469249 NM_012222 NP_036354 A/G V22M minus 24607457 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p34.3-p32.1 mutY homolog (E. coli) 24133 rs3219484 MUTYH 4595 1 45469249 NM_012222 NP_036354 A/G V22M minus 24607457 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1p34.3-p32.1 mutY homolog (E. coli) 24134 rs3219489 MUTYH 4595 1 45466598 NM_012222 NP_036354 C/G Q335H minus 4911247 693 EGP_SNPS PDR90 NIHPDR 180 0.41 120 "by doubleHit,freq,cluster" 1p34.3-p32.1 mutY homolog (E. coli) 24135 rs3219489 MUTYH 4595 1 45466598 NM_012222 NP_036354 C/G Q335H minus 4997837 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.44 120 "by doubleHit,freq,cluster" 1p34.3-p32.1 mutY homolog (E. coli) 24136 rs3729961 IL6ST 3572 5 55287688 NM_002184 NP_002175 C/G L397V minus 16360316 649 FHCRC POPU1 USA (20) 40 0.18 120 "by cluster,freq" 5q11 "interleukin 6 signal transducer (gp130, oncostatin M receptor)" 24137 rs3729986 MYBPC3 4607 11 47328174 NM_000256 NP_000247 A/G V158M minus 16341813 693 EGP_SNPS PDR90 NIHPDR 178 0.03 120 "by cluster,freq" 11p11.2 "myosin binding protein C, cardiac" 24138 rs3729989 MYBPC3 4607 11 47326617 NM_000256 NP_000247 A/G S236G minus 16341824 693 EGP_SNPS PDR90 NIHPDR 164 0.09 120 "by cluster,freq" 11p11.2 "myosin binding protein C, cardiac" 24139 rs3730017 NOS2A 4843 17 23133229 NM_000625 NP_000616 C/T R221W minus 23641045 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24140 rs3730017 NOS2A 4843 17 23133229 NM_000625 NP_000616 C/T R221W minus 23641045 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24141 rs3730017 NOS2A 4843 17 23133229 NM_000625 NP_000616 C/T R221W minus 23641045 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24142 rs3730017 NOS2A 4843 17 23133229 NM_153292 NP_695024 C/T R221W minus 23641045 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24143 rs3730017 NOS2A 4843 17 23133229 NM_153292 NP_695024 C/T R221W minus 23641045 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24144 rs3730017 NOS2A 4843 17 23133229 NM_153292 NP_695024 C/T R221W minus 23641045 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 17q11.2-q12 "nitric oxide synthase 2A (inducible, hepatocytes)" 24145 rs3730043 ACE 1636 17 58922309 NM_000789 NP_000780 C/T T916M plus 20418768 889 PHARMGKB_PARC PA128275074 92 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24146 rs3730043 ACE 1636 17 58922309 NM_000789 NP_000780 C/T T916M plus 20418785 889 PHARMGKB_PARC PA128275074 94 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24147 rs3730043 ACE 1636 17 58922309 NM_152830 NP_690043 C/T T342M plus 20418768 889 PHARMGKB_PARC PA128275074 92 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24148 rs3730043 ACE 1636 17 58922309 NM_152830 NP_690043 C/T T342M plus 20418785 889 PHARMGKB_PARC PA128275074 94 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24149 rs3730043 ACE 1636 17 58922309 NM_152831 NP_690044 C/T T342M plus 20418768 889 PHARMGKB_PARC PA128275074 92 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24150 rs3730043 ACE 1636 17 58922309 NM_152831 NP_690044 C/T T342M plus 20418785 889 PHARMGKB_PARC PA128275074 94 0.01 123 by freq 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 24151 rs3730463 POLL 27343 10 103334579 NM_013274 NP_037406 A/C T221P minus 4916425 693 EGP_SNPS PDR90 NIHPDR 180 0.07 111 "by cluster,freq" 10q23 "polymerase (DNA directed), lambda" 24152 rs3730477 POLL 27343 10 103330046 NM_013274 NP_037406 C/T R438W minus 4916439 693 EGP_SNPS PDR90 NIHPDR 168 0.13 123 "by doubleHit,freq,cluster" 10q23 "polymerase (DNA directed), lambda" 24153 rs3730477 POLL 27343 10 103330046 NM_013274 NP_037406 C/T R438W minus 24493023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 10q23 "polymerase (DNA directed), lambda" 24154 rs3730477 POLL 27343 10 103330046 NM_013274 NP_037406 C/T R438W minus 24493023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 10q23 "polymerase (DNA directed), lambda" 24155 rs3730477 POLL 27343 10 103330046 NM_013274 NP_037406 C/T R438W minus 24493023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q23 "polymerase (DNA directed), lambda" 24156 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 4916883 693 EGP_SNPS PDR90 NIHPDR 180 0.01 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24157 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 4916883 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24158 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 5606319 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24159 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 5606319 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24160 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 5606319 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24161 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 5606319 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24162 rs3730911 LIG1 3978 19 53344862 NM_000234 NP_000225 A/G G249E minus 5606319 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24163 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 4916905 693 EGP_SNPS PDR90 NIHPDR 160 0.02 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24164 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 4916905 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24165 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 4916905 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24166 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 5606320 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24167 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 5606320 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24168 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 5606320 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24169 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 5606320 777 SNP500CANCER HISP1 Hispanic (23) 44 0.02 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24170 rs3730933 LIG1 3978 19 53339009 NM_000234 NP_000225 A/G N267S minus 5606320 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,freq,cluster" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24171 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 4916952 693 EGP_SNPS PDR90 NIHPDR 176 0.01 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24172 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 4916952 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24173 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 5606322 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24174 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 5606322 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24175 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 5606322 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24176 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 5606322 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24177 rs3730980 LIG1 3978 19 53330834 NM_000234 NP_000225 A/G M480V minus 5606322 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24178 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 4916978 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24179 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24180 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24181 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24182 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24183 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24184 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 5606323 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24185 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 23614332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24186 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 23614332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24187 rs3731003 LIG1 3978 19 53323070 NM_000234 NP_000225 C/T T614I minus 23614332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24188 rs3731008 LIG1 3978 19 53318362 NM_000234 NP_000225 G/T R677L minus 4916985 693 EGP_SNPS PDR90 NIHPDR 180 0.01 107 HapMap 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24189 rs3731008 LIG1 3978 19 53318362 NM_000234 NP_000225 G/T R677L minus 4916985 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24190 rs3731008 LIG1 3978 19 53318362 NM_000234 NP_000225 G/T R677L minus 4916985 1303 SEQUENOM CEPH CEPH (92) 92 1 107 HapMap 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 24191 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 4917238 693 EGP_SNPS PDR90 NIHPDR 172 0.03 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24192 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 4917238 1303 SEQUENOM CEPH CEPH (92) 92 0.06 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24193 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 8819697 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24194 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 8819697 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24195 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 8819697 776 SNP500CANCER AFR1 African / African-American (24) 46 1 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24196 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 8819697 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24197 rs3731249 CDKN2A 1029 9 21960916 NM_000077 NP_000068 A/G A148T minus 8819697 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "by cluster,freq" 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 24198 rs3731594 IRS1 3667 2 227485551 NM_005544 NP_005535 C/T D1137N plus 4917585 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.05 121 "HapMap,cluster" 2q36 insulin receptor substrate 1 24199 rs3731594 IRS1 3667 2 227485551 NM_005544 NP_005535 C/T D1137N plus 22887348 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 2q36 insulin receptor substrate 1 24200 rs3731625 ITSN2 50618 2 24350699 NM_006277 NP_006268 C/T I1286T minus 4917616 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.08 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24201 rs3731625 ITSN2 50618 2 24350699 NM_006277 NP_006268 C/T I1286T minus 23222610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24202 rs3731625 ITSN2 50618 2 24350699 NM_006277 NP_006268 C/T I1286T minus 23222610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24203 rs3731625 ITSN2 50618 2 24350699 NM_006277 NP_006268 C/T I1286T minus 23222610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24204 rs3731625 ITSN2 50618 2 24350699 NM_019595 NP_062541 C/T I1259T minus 4917616 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.08 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24205 rs3731625 ITSN2 50618 2 24350699 NM_019595 NP_062541 C/T I1259T minus 23222610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24206 rs3731625 ITSN2 50618 2 24350699 NM_019595 NP_062541 C/T I1259T minus 23222610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24207 rs3731625 ITSN2 50618 2 24350699 NM_019595 NP_062541 C/T I1259T minus 23222610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 2pter-p25.1 intersectin 2 24208 rs3731644 SH3BP4 23677 2 235731877 NM_014521 NP_055336 C/T M155T plus 4917635 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.47 123 "HapMap,doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24209 rs3731644 SH3BP4 23677 2 235731877 NM_014521 NP_055336 C/T M155T plus 11482682 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24210 rs3731644 SH3BP4 23677 2 235731877 NM_014521 NP_055336 C/T M155T plus 23213589 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24211 rs3731644 SH3BP4 23677 2 235731877 NM_014521 NP_055336 C/T M155T plus 23213589 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24212 rs3731644 SH3BP4 23677 2 235731877 NM_014521 NP_055336 C/T M155T plus 23213589 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24213 rs3731646 SH3BP4 23677 2 235732002 NM_014521 NP_055336 A/G A197T plus 4917637 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.48 123 "by doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24214 rs3731646 SH3BP4 23677 2 235732002 NM_014521 NP_055336 A/G A197T plus 23873901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24215 rs3731646 SH3BP4 23677 2 235732002 NM_014521 NP_055336 A/G A197T plus 23873901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24216 rs3731646 SH3BP4 23677 2 235732002 NM_014521 NP_055336 A/G A197T plus 23873901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 2q37.1-q37.2 SH3-domain binding protein 4 24217 rs3731722 AOX1 316 2 201359895 NM_001159 NP_001150 C/T H1297R minus 4917713 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.06 107 by freq 2q33 aldehyde oxidase 1 24218 rs3731824 SIAT9 8869 2 85999969 NM_003896 NP_003887 A/G H48R minus 4917815 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.24 123 "by cluster,freq" 2p11.2 "sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)" 24219 rs3731824 SIAT9 8869 2 85999969 NM_003896 NP_003887 A/G H48R minus 23859100 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 2p11.2 "sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)" 24220 rs3731824 SIAT9 8869 2 85999969 NM_003896 NP_003887 A/G H48R minus 23859100 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 2p11.2 "sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)" 24221 rs3731824 SIAT9 8869 2 85999969 NM_003896 NP_003887 A/G H48R minus 23859100 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 2p11.2 "sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)" 24222 rs3731875 TTLL4 9654 2 219428995 NM_014640 NP_055455 A/G L364P minus 4917866 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.01 107 HapMap 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24223 rs3731875 TTLL4 9654 2 219428995 NM_014640 NP_055455 A/G L364P minus 4917866 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24224 rs3731877 TTLL4 9654 2 219428004 NM_014640 NP_055455 C/G E34Q minus 4917868 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.13 123 "by cluster,freq" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24225 rs3731877 TTLL4 9654 2 219428004 NM_014640 NP_055455 C/G E34Q minus 23727607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24226 rs3731877 TTLL4 9654 2 219428004 NM_014640 NP_055455 C/G E34Q minus 23727607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24227 rs3731877 TTLL4 9654 2 219428004 NM_014640 NP_055455 C/G E34Q minus 23727607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by cluster,freq" 2p24.3-p24.1 "tubulin tyrosine ligase-like family, member 4" 24228 rs3731891 TUBA4 80086 2 219961744 NM_025019 NP_079295 C/T R182C plus 4917882 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.1 107 by freq 2q36.1 "tubulin, alpha 4" 24229 rs3731892 TUBA4 80086 2 219961856 NM_025019 NP_079295 A/G R219K plus 4917883 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 2q36.1 "tubulin, alpha 4" 24230 rs3731892 TUBA4 80086 2 219961856 NM_025019 NP_079295 A/G R219K plus 23192887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 2q36.1 "tubulin, alpha 4" 24231 rs3731892 TUBA4 80086 2 219961856 NM_025019 NP_079295 A/G R219K plus 23192887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "HapMap,doubleHit,freq,cluster" 2q36.1 "tubulin, alpha 4" 24232 rs3731892 TUBA4 80086 2 219961856 NM_025019 NP_079295 A/G R219K plus 23192887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2q36.1 "tubulin, alpha 4" 24233 rs3731958 GTDC1 79712 2 144733291 NM_024659 NP_078935 A/C M137I plus 4917949 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,freq,cluster" 2q22.3-q23.1 glycosyltransferase-like 1 24234 rs3731958 GTDC1 79712 2 144733291 NM_024659 NP_078935 A/C M137I plus 24289474 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 2q22.3-q23.1 glycosyltransferase-like 1 24235 rs3731958 GTDC1 79712 2 144733291 NM_024659 NP_078935 A/C M137I plus 24289474 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 2q22.3-q23.1 glycosyltransferase-like 1 24236 rs3731958 GTDC1 79712 2 144733291 NM_024659 NP_078935 A/C M137I plus 24289474 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 2q22.3-q23.1 glycosyltransferase-like 1 24237 rs3731969 GPR75 10936 2 53992248 NM_006794 NP_006785 G/T L433V minus 4917960 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p16 G protein-coupled receptor 75 24238 rs3732083 GPR1 2825 2 206866559 NM_005279 NP_005270 A/G I307V minus 4918074 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.24 119 "by doubleHit,freq,cluster" 2q33.3 G protein-coupled receptor 1 24239 rs3732235 ZFML 27332 2 71542764 NM_014497 NP_055312 C/T N980S minus 23216673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 2p13.2-p13.1 NP220 nuclear protein 24240 rs3732235 ZFML 27332 2 71542764 NM_014497 NP_055312 C/T N980S minus 23216673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by cluster,freq" 2p13.2-p13.1 NP220 nuclear protein 24241 rs3732235 ZFML 27332 2 71542764 NM_014497 NP_055312 C/T N980S minus 23216673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 2p13.2-p13.1 NP220 nuclear protein 24242 rs3732240 MPHOSPH10 10199 2 71278612 NM_005791 NP_005782 G/T L425M minus 4918231 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.35 107 by freq 2p13.2 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) 24243 rs3732287 BAZ2B 29994 2 160115086 NM_013450 NP_038478 A/G P334L plus 4918278 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.12 123 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 24244 rs3732287 BAZ2B 29994 2 160115086 NM_013450 NP_038478 A/G P334L plus 4918278 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 24245 rs3732287 BAZ2B 29994 2 160115086 NM_013450 NP_038478 A/G P334L plus 24167666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 24246 rs3732287 BAZ2B 29994 2 160115086 NM_013450 NP_038478 A/G P334L plus 24167666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 24247 rs3732287 BAZ2B 29994 2 160115086 NM_013450 NP_038478 A/G P334L plus 24167666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq" 2q23-q24 "bromodomain adjacent to zinc finger domain, 2B" 24248 rs3732299 HK2 3099 2 75011132 NM_000189 NP_000180 A/T Q142H minus 4918290 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.24 107 "HapMap,freq" 2p13 hexokinase 2 24249 rs3732299 HK2 3099 2 75011132 NM_000189 NP_000180 A/T Q142H minus 4918290 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 107 "HapMap,freq" 2p13 hexokinase 2 24250 rs3732305 Rif1 55183 2 152146598 NM_018151 NP_060621 C/G R1686G plus 4918296 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.02 123 "by cluster,freq" 2q24.1 telomere-associated protein RIF1 homolog 24251 rs3732305 Rif1 55183 2 152146598 NM_018151 NP_060621 C/G R1686G plus 24143148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q24.1 telomere-associated protein RIF1 homolog 24252 rs3732305 Rif1 55183 2 152146598 NM_018151 NP_060621 C/G R1686G plus 24143148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q24.1 telomere-associated protein RIF1 homolog 24253 rs3732305 Rif1 55183 2 152146598 NM_018151 NP_060621 C/G R1686G plus 24143148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 2q24.1 telomere-associated protein RIF1 homolog 24254 rs3732309 NEB 4703 2 152198482 NM_004543 NP_004534 C/T G5934E plus 4918300 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.02 123 "HapMap,freq,cluster" 2q22 nebulin 24255 rs3732309 NEB 4703 2 152198482 NM_004543 NP_004534 C/T G5934E plus 4918300 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q22 nebulin 24256 rs3732309 NEB 4703 2 152198482 NM_004543 NP_004534 C/T G5934E plus 24143168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2q22 nebulin 24257 rs3732309 NEB 4703 2 152198482 NM_004543 NP_004534 C/T G5934E plus 24143168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 2q22 nebulin 24258 rs3732309 NEB 4703 2 152198482 NM_004543 NP_004534 C/T G5934E plus 24143168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2q22 nebulin 24259 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 4918369 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.05 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24260 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 5586363 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.1 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24261 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 5586363 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.15 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24262 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 5586363 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24263 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 5586363 777 SNP500CANCER HISP1 Hispanic (23) 46 0.09 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24264 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 5586363 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.15 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24265 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 24299415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24266 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 24299415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24267 rs3732378 CX3CR1 1524 3 39282166 NM_001337 NP_001328 A/G T280M plus 24299415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24268 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 4918370 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.05 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24269 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 5586362 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.16 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24270 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 5586362 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24271 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 5586362 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24272 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 5586362 777 SNP500CANCER HISP1 Hispanic (23) 46 0.13 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24273 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 5586362 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.17 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24274 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 24299422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24275 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 24299422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24276 rs3732379 CX3CR1 1524 3 39282260 NM_001337 NP_001328 C/T V249I plus 24299422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 3p21.3 chemokine (C-X3-C motif) receptor 1 24277 rs3732380 CX3CR1 1524 3 39282566 NM_001337 NP_001328 C/T V147I plus 4918371 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.03 123 "HapMap,freq,cluster" 3p21.3 chemokine (C-X3-C motif) receptor 1 24278 rs3732380 CX3CR1 1524 3 39282566 NM_001337 NP_001328 C/T V147I plus 4918371 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 3p21.3 chemokine (C-X3-C motif) receptor 1 24279 rs3732380 CX3CR1 1524 3 39282566 NM_001337 NP_001328 C/T V147I plus 23886856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 3p21.3 chemokine (C-X3-C motif) receptor 1 24280 rs3732380 CX3CR1 1524 3 39282566 NM_001337 NP_001328 C/T V147I plus 23886856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 3p21.3 chemokine (C-X3-C motif) receptor 1 24281 rs3732380 CX3CR1 1524 3 39282566 NM_001337 NP_001328 C/T V147I plus 23886856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 3p21.3 chemokine (C-X3-C motif) receptor 1 24282 rs3732383 CMYA1 165904 3 39201131 NM_194293 NP_919269 C/T G1604R plus 4918374 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.17 107 by freq 3p21.33 cardiomyopathy associated 1 24283 rs3732401 GTF2E1 2960 3 121982783 NM_005513 NP_005504 C/T P366S plus 4918392 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 123 "by doubleHit,freq,cluster" 3q21-q24 "general transcription factor IIE, polypeptide 1, alpha 56kDa" 24284 rs3732401 GTF2E1 2960 3 121982783 NM_005513 NP_005504 C/T P366S plus 23900015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 3q21-q24 "general transcription factor IIE, polypeptide 1, alpha 56kDa" 24285 rs3732401 GTF2E1 2960 3 121982783 NM_005513 NP_005504 C/T P366S plus 23900015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,freq,cluster" 3q21-q24 "general transcription factor IIE, polypeptide 1, alpha 56kDa" 24286 rs3732401 GTF2E1 2960 3 121982783 NM_005513 NP_005504 C/T P366S plus 23900015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 3q21-q24 "general transcription factor IIE, polypeptide 1, alpha 56kDa" 24287 rs3732407 GOLGB1 2804 3 122899313 NM_004487 NP_004478 C/G T911S plus 4918398 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.03 123 by freq 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24288 rs3732407 GOLGB1 2804 3 122899313 NM_004487 NP_004478 C/G T911S plus 24359222 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24289 rs3732407 GOLGB1 2804 3 122899313 NM_004487 NP_004478 C/G T911S plus 24359222 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24290 rs3732407 GOLGB1 2804 3 122899313 NM_004487 NP_004478 C/G T911S plus 24359222 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24291 rs3732410 GOLGB1 2804 3 122898410 NM_004487 NP_004478 A/G Y1212C minus 4918401 738 YUSUKE JBIC-ALLELE Japanese (752) 1262 0.36 123 "by cluster,freq" 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24292 rs3732410 GOLGB1 2804 3 122898410 NM_004487 NP_004478 A/G Y1212C minus 23934640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24293 rs3732410 GOLGB1 2804 3 122898410 NM_004487 NP_004478 A/G Y1212C minus 23934640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24294 rs3732410 GOLGB1 2804 3 122898410 NM_004487 NP_004478 A/G Y1212C minus 23934640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 3q13 "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1" 24295 rs3732485 MYLK 4638 3 124902472 NM_053025 NP_444253 C/T R845C minus 4918476 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 HapMap 3q21 "myosin, light polypeptide kinase" 24296 rs3732485 MYLK 4638 3 124902472 NM_053025 NP_444253 C/T R845C minus 4918476 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q21 "myosin, light polypeptide kinase" 24297 rs3732485 MYLK 4638 3 124902472 NM_053026 NP_444254 C/T R776C minus 4918476 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 HapMap 3q21 "myosin, light polypeptide kinase" 24298 rs3732485 MYLK 4638 3 124902472 NM_053026 NP_444254 C/T R776C minus 4918476 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q21 "myosin, light polypeptide kinase" 24299 rs3732485 MYLK 4638 3 124902472 NM_053027 NP_444255 C/T R845C minus 4918476 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 HapMap 3q21 "myosin, light polypeptide kinase" 24300 rs3732485 MYLK 4638 3 124902472 NM_053027 NP_444255 C/T R845C minus 4918476 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q21 "myosin, light polypeptide kinase" 24301 rs3732485 MYLK 4638 3 124902472 NM_053028 NP_444256 C/T R776C minus 4918476 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 HapMap 3q21 "myosin, light polypeptide kinase" 24302 rs3732485 MYLK 4638 3 124902472 NM_053028 NP_444256 C/T R776C minus 4918476 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q21 "myosin, light polypeptide kinase" 24303 rs3732485 MYLK 4638 3 124902472 NM_053029 NP_444257 C/T R845C minus 4918476 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 HapMap 3q21 "myosin, light polypeptide kinase" 24304 rs3732485 MYLK 4638 3 124902472 NM_053029 NP_444257 C/T R845C minus 4918476 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q21 "myosin, light polypeptide kinase" 24305 rs3732486 MYLK 4638 3 124902423 NM_053025 NP_444253 C/T L861P minus 4918477 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 107 by freq 3q21 "myosin, light polypeptide kinase" 24306 rs3732486 MYLK 4638 3 124902423 NM_053026 NP_444254 C/T L792P minus 4918477 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 107 by freq 3q21 "myosin, light polypeptide kinase" 24307 rs3732486 MYLK 4638 3 124902423 NM_053027 NP_444255 C/T L861P minus 4918477 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 107 by freq 3q21 "myosin, light polypeptide kinase" 24308 rs3732486 MYLK 4638 3 124902423 NM_053028 NP_444256 C/T L792P minus 4918477 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 107 by freq 3q21 "myosin, light polypeptide kinase" 24309 rs3732486 MYLK 4638 3 124902423 NM_053029 NP_444257 C/T L861P minus 4918477 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.4 107 by freq 3q21 "myosin, light polypeptide kinase" 24310 rs3732507 ARHGEF3 50650 3 56810829 NM_019555 NP_062455 A/G K13R minus 4918498 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 107 by freq 3p21-p13 Rho guanine nucleotide exchange factor (GEF) 3 24311 rs3732518 ZNF35 7584 3 44675385 NM_003420 NP_003411 A/G Q168X minus 4918509 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 3p22-p21 zinc finger protein 35 (clone HF.10) 24312 rs3732530 CSPG5 10675 3 47593957 NM_006574 NP_006565 A/C G188V plus 4918521 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.37 121 "by doubleHit,freq,cluster" 3p21.3 chondroitin sulfate proteoglycan 5 (neuroglycan C) 24313 rs3732576 MAP3K13 9175 3 186680964 NM_004721 NP_004712 C/T R915H minus 4918567 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.01 107 HapMap 3q27 mitogen-activated protein kinase kinase kinase 13 24314 rs3732576 MAP3K13 9175 3 186680964 NM_004721 NP_004712 C/T R915H minus 4918567 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q27 mitogen-activated protein kinase kinase kinase 13 24315 rs3732581 PSARL 55486 3 185041104 NM_018622 NP_061092 C/G V262L minus 4918572 738 YUSUKE JBIC-ALLELE Japanese (752) 1274 0.48 116 "HapMap,doubleHit,freq,cluster" 3q27.3 "presenilin associated, rhomboid-like" 24316 rs3732581 PSARL 55486 3 185041104 NM_018622 NP_061092 C/G V262L minus 10040218 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.49 116 "HapMap,doubleHit,freq,cluster" 3q27.3 "presenilin associated, rhomboid-like" 24317 rs3732671 NUP210 23225 3 13382556 NM_024923 NP_079199 A/G I608V minus 4918662 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.49 123 "HapMap,freq,cluster" 3p25.2-p25.1 nucleoporin 210 24318 rs3732671 NUP210 23225 3 13382556 NM_024923 NP_079199 A/G I608V minus 11539704 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.44 123 "HapMap,freq,cluster" 3p25.2-p25.1 nucleoporin 210 24319 rs3732671 NUP210 23225 3 13382556 NM_024923 NP_079199 A/G I608V minus 24306733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,freq,cluster" 3p25.2-p25.1 nucleoporin 210 24320 rs3732671 NUP210 23225 3 13382556 NM_024923 NP_079199 A/G I608V minus 24306733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 3p25.2-p25.1 nucleoporin 210 24321 rs3732671 NUP210 23225 3 13382556 NM_024923 NP_079199 A/G I608V minus 24306733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,freq,cluster" 3p25.2-p25.1 nucleoporin 210 24322 rs3732675 TIP120B 23066 3 12833028 XM_371617 XP_371617 C/T S440P plus 4918666 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.47 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 24323 rs3732675 TIP120B 23066 3 12833028 XM_371617 XP_371617 C/T S440P plus 24304654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 24324 rs3732675 TIP120B 23066 3 12833028 XM_371617 XP_371617 C/T S440P plus 24304654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 24325 rs3732675 TIP120B 23066 3 12833028 XM_371617 XP_371617 C/T S440P plus 24304654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 24326 rs3732756 GPR171 29909 3 152399025 NM_013308 NP_037440 C/T I283V plus 4918747 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.12 107 HapMap 3q25.1 platelet activating receptor homolog 24327 rs3732756 GPR171 29909 3 152399025 NM_013308 NP_037440 C/T I283V plus 4918747 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3q25.1 platelet activating receptor homolog 24328 rs3732781 ZNF80 7634 3 115437877 NM_007136 NP_009067 G/T Y245X minus 24377860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 by freq 3p12-qter zinc finger protein 80 (pT17) 24329 rs3732781 ZNF80 7634 3 115437877 NM_007136 NP_009067 G/T Y245X minus 24377860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.12 123 by freq 3p12-qter zinc finger protein 80 (pT17) 24330 rs3732781 ZNF80 7634 3 115437877 NM_007136 NP_009067 G/T Y245X minus 24377860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 by freq 3p12-qter zinc finger protein 80 (pT17) 24331 rs3732782 ZNF80 7634 3 115437854 NM_007136 NP_009067 A/C D253A minus 4918773 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.4 121 "by doubleHit,freq,cluster" 3p12-qter zinc finger protein 80 (pT17) 24332 rs3732851 SCHIP1 29970 3 160965171 NM_014575 NP_055390 A/G E101K plus 4918842 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 107 by freq 3q25.33 schwannomin interacting protein 1 24333 rs3732895 TARSH 25890 3 102194939 NM_015429 NP_056244 A/G M1V minus 23294101 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 3q12 target of Nesh-SH3 24334 rs3732895 TARSH 25890 3 102194939 NM_015429 NP_056244 A/G M1V minus 23294101 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by cluster,freq" 3q12 target of Nesh-SH3 24335 rs3732895 TARSH 25890 3 102194939 NM_015429 NP_056244 A/G M1V minus 23294101 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 3q12 target of Nesh-SH3 24336 rs3732978 SRGAP2 9901 3 9002262 NM_014850 NP_055665 A/G V1081M minus 4918969 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 107 HapMap 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 24337 rs3732978 SRGAP2 9901 3 9002262 NM_014850 NP_055665 A/G V1081M minus 4918969 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 3p25.3 SLIT-ROBO Rho GTPase activating protein 2 24338 rs3733011 HRG 3273 3 187872261 NM_000412 NP_000403 C/T I180T plus 4919002 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.1 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 24339 rs3733011 HRG 3273 3 187872261 NM_000412 NP_000403 C/T I180T plus 23914231 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 24340 rs3733011 HRG 3273 3 187872261 NM_000412 NP_000403 C/T I180T plus 23914231 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 24341 rs3733011 HRG 3273 3 187872261 NM_000412 NP_000403 C/T I180T plus 23914231 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by doubleHit,freq,cluster" 3q27 histidine-rich glycoprotein 24342 rs3733055 VIPR1 7433 3 42552737 NM_004624 NP_004615 G/T R445L plus 4919046 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 107 by freq 3p22 vasoactive intestinal peptide receptor 1 24343 rs3733082 ACTR8 93973 3 53889133 NM_022899 NP_075050 A/G T56I plus 10027441 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.01 120 "HapMap,doubleHit,cluster" 3p21.31 ARP8 actin-related protein 8 homolog (yeast) 24344 rs3733085 CELSR3 1951 3 48674603 NM_001407 NP_001398 C/G A157P minus 4919076 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 107 by freq 3p24.1-p21.2 "cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)" 24345 rs3733100 FYCO1 79443 3 45984868 NM_024513 NP_078789 C/G G321A minus 4919091 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 121 "by doubleHit,freq,cluster" 3p21.32 FYVE and coiled-coil domain containing 1 24346 rs3733101 FYCO1 79443 3 45984688 NM_024513 NP_078789 C/T T381M minus 4919092 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 107 by freq 3p21.32 FYVE and coiled-coil domain containing 1 24347 rs3733113 LIMD1 8994 3 45612618 NM_014240 NP_055055 C/T G415R minus 4919104 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.04 107 by freq 3p21.3 LIM domains containing 1 24348 rs3733124 SCA7 6314 3 63956255 NM_000333 NP_000324 A/G I573V plus 4919115 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.04 107 HapMap 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 24349 rs3733124 SCA7 6314 3 63956255 NM_000333 NP_000324 A/G I573V plus 4919115 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 107 HapMap 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 24350 rs3733182 STK32B 55351 4 5566501 NM_018401 NP_060871 C/T R198G minus 4919177 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.47 123 "HapMap,freq,cluster" 4p16.2 serine/threonine kinase 32B 24351 rs3733182 STK32B 55351 4 5566501 NM_018401 NP_060871 C/T R198G minus 4919177 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 4p16.2 serine/threonine kinase 32B 24352 rs3733182 STK32B 55351 4 5566501 NM_018401 NP_060871 C/T R198G minus 24163530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.05 123 "HapMap,freq,cluster" 4p16.2 serine/threonine kinase 32B 24353 rs3733182 STK32B 55351 4 5566501 NM_018401 NP_060871 C/T R198G minus 24163530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "HapMap,freq,cluster" 4p16.2 serine/threonine kinase 32B 24354 rs3733182 STK32B 55351 4 5566501 NM_018401 NP_060871 C/T R198G minus 24163530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 34 0.41 123 "HapMap,freq,cluster" 4p16.2 serine/threonine kinase 32B 24355 rs3733197 BANK1 55024 4 103196465 NM_017935 NP_060405 A/G A383T plus 4919192 738 YUSUKE JBIC-ALLELE Japanese (752) 730 0.15 107 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 24356 rs3733227 SCD4 79966 4 83939390 NM_024906 NP_079182 C/G E197Q minus 4919222 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24357 rs3733227 SCD4 79966 4 83939390 NM_024906 NP_079182 C/G E197Q minus 23836003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24358 rs3733227 SCD4 79966 4 83939390 NM_024906 NP_079182 C/G E197Q minus 23836003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24359 rs3733227 SCD4 79966 4 83939390 NM_024906 NP_079182 C/G E197Q minus 23836003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24360 rs3733228 SCD4 79966 4 83939243 NM_024906 NP_079182 A/C L246M minus 4919223 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.46 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24361 rs3733228 SCD4 79966 4 83939243 NM_024906 NP_079182 A/C L246M minus 23836000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24362 rs3733228 SCD4 79966 4 83939243 NM_024906 NP_079182 A/C L246M minus 23836000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24363 rs3733228 SCD4 79966 4 83939243 NM_024906 NP_079182 A/C L246M minus 23836000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 4q21.3 stearoyl-CoA desaturase 4 24364 rs3733242 ShrmL 57619 4 78032684 NM_020859 NP_065910 A/G P1289L minus 4919237 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.44 121 "by cluster,freq" 4q21.22 Shroom-related protein 24365 rs3733378 MLLT2 4299 4 88325512 NM_005935 NP_005926 C/G P209A minus 4919373 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 by freq 4q21 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 2" 24366 rs3733526 PDE5A 8654 4 120885930 NM_001083 NP_001074 A/G A93V plus 4919521 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24367 rs3733526 PDE5A 8654 4 120885930 NM_001083 NP_001074 A/G A93V plus 24331847 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24368 rs3733526 PDE5A 8654 4 120885930 NM_001083 NP_001074 A/G A93V plus 24331847 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24369 rs3733526 PDE5A 8654 4 120885930 NM_001083 NP_001074 A/G A93V plus 24331847 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24370 rs3733526 PDE5A 8654 4 120885930 NM_033431 NP_237223 A/G A93V plus 4919521 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24371 rs3733526 PDE5A 8654 4 120885930 NM_033431 NP_237223 A/G A93V plus 24331847 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24372 rs3733526 PDE5A 8654 4 120885930 NM_033431 NP_237223 A/G A93V plus 24331847 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24373 rs3733526 PDE5A 8654 4 120885930 NM_033431 NP_237223 A/G A93V plus 24331847 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24374 rs3733526 PDE5A 8654 4 120885930 NM_033437 NP_246273 A/G A41V plus 4919521 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.11 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24375 rs3733526 PDE5A 8654 4 120885930 NM_033437 NP_246273 A/G A41V plus 24331847 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24376 rs3733526 PDE5A 8654 4 120885930 NM_033437 NP_246273 A/G A41V plus 24331847 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24377 rs3733526 PDE5A 8654 4 120885930 NM_033437 NP_246273 A/G A41V plus 24331847 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 24378 rs3733549 BMP3 651 4 82324329 NM_001201 NP_001192 A/G R192Q plus 4919544 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.18 123 by freq 4p14-q21 bone morphogenetic protein 3 (osteogenic) 24379 rs3733549 BMP3 651 4 82324329 NM_001201 NP_001192 A/G R192Q plus 23835816 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4p14-q21 bone morphogenetic protein 3 (osteogenic) 24380 rs3733549 BMP3 651 4 82324329 NM_001201 NP_001192 A/G R192Q plus 23835816 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4p14-q21 bone morphogenetic protein 3 (osteogenic) 24381 rs3733549 BMP3 651 4 82324329 NM_001201 NP_001192 A/G R192Q plus 23835816 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.2 123 by freq 4p14-q21 bone morphogenetic protein 3 (osteogenic) 24382 rs3733591 SLC2A9 56606 4 9598399 NM_001001290 NP_001001290 A/G R265H minus 4919586 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.28 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24383 rs3733591 SLC2A9 56606 4 9598399 NM_001001290 NP_001001290 A/G R265H minus 23900144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24384 rs3733591 SLC2A9 56606 4 9598399 NM_001001290 NP_001001290 A/G R265H minus 23900144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24385 rs3733591 SLC2A9 56606 4 9598399 NM_001001290 NP_001001290 A/G R265H minus 23900144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24386 rs3733591 SLC2A9 56606 4 9598399 NM_020041 NP_064425 A/G R294H minus 4919586 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.28 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24387 rs3733591 SLC2A9 56606 4 9598399 NM_020041 NP_064425 A/G R294H minus 23900144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24388 rs3733591 SLC2A9 56606 4 9598399 NM_020041 NP_064425 A/G R294H minus 23900144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24389 rs3733591 SLC2A9 56606 4 9598399 NM_020041 NP_064425 A/G R294H minus 23900144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by cluster,freq" 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 24390 rs3733616 ANK2 287 4 114634645 NM_001148 NP_001139 A/G A2423T plus 4919611 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 107 by freq 4q25-q27 "ankyrin 2, neuronal" 24391 rs3733617 ANK2 287 4 114635881 NM_001148 NP_001139 C/T P2835S plus 4919612 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.13 123 "HapMap,freq,cluster" 4q25-q27 "ankyrin 2, neuronal" 24392 rs3733617 ANK2 287 4 114635881 NM_001148 NP_001139 C/T P2835S plus 4919612 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 4q25-q27 "ankyrin 2, neuronal" 24393 rs3733617 ANK2 287 4 114635881 NM_001148 NP_001139 C/T P2835S plus 23730944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 4q25-q27 "ankyrin 2, neuronal" 24394 rs3733617 ANK2 287 4 114635881 NM_001148 NP_001139 C/T P2835S plus 23730944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,freq,cluster" 4q25-q27 "ankyrin 2, neuronal" 24395 rs3733617 ANK2 287 4 114635881 NM_001148 NP_001139 C/T P2835S plus 23730944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 4q25-q27 "ankyrin 2, neuronal" 24396 rs3733689 PCDHB10 56126 5 140552340 NM_018930 NP_061753 A/G Q11X minus 4919684 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q31 protocadherin beta 10 24397 rs3733694 PCDHB8 56128 5 140538712 NM_019120 NP_061993 C/T K305E minus 4919689 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.07 123 "HapMap,freq" 5q31 protocadherin beta 8 24398 rs3733694 PCDHB8 56128 5 140538712 NM_019120 NP_061993 C/T K305E minus 4919689 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,freq" 5q31 protocadherin beta 8 24399 rs3733694 PCDHB8 56128 5 140538712 NM_019120 NP_061993 C/T K305E minus 23351119 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 5q31 protocadherin beta 8 24400 rs3733694 PCDHB8 56128 5 140538712 NM_019120 NP_061993 C/T K305E minus 23351119 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,freq" 5q31 protocadherin beta 8 24401 rs3733694 PCDHB8 56128 5 140538712 NM_019120 NP_061993 C/T K305E minus 23351119 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,freq" 5q31 protocadherin beta 8 24402 rs3733699 PCDHB3 56132 5 140461659 NM_018937 NP_061760 A/T R414S minus 4919694 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.11 120 "HapMap,freq,cluster" 5q31 protocadherin beta 3 24403 rs3733699 PCDHB3 56132 5 140461659 NM_018937 NP_061760 A/T R414S minus 19610355 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 120 "HapMap,freq,cluster" 5q31 protocadherin beta 3 24404 rs3733706 PCDHA8 56140 5 140202298 NM_018911 NP_061734 G/T N403T minus 4919701 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 5q31 protocadherin alpha 8 24405 rs3733706 PCDHA8 56140 5 140202298 NM_031856 NP_114062 G/T N403T minus 4919701 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 5q31 protocadherin alpha 8 24406 rs3733708 PCDHA3 56145 5 140161918 NM_018906 NP_061729 C/T I318V minus 4919703 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24407 rs3733708 PCDHA3 56145 5 140161918 NM_018906 NP_061729 C/T I318V minus 24621818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 23 0.5 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24408 rs3733708 PCDHA3 56145 5 140161918 NM_018906 NP_061729 C/T I318V minus 24621818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24409 rs3733708 PCDHA3 56145 5 140161918 NM_018906 NP_061729 C/T I318V minus 24621818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24410 rs3733708 PCDHA3 56145 5 140161918 NM_031497 NP_113685 C/T I318V minus 4919703 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24411 rs3733708 PCDHA3 56145 5 140161918 NM_031497 NP_113685 C/T I318V minus 24621818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 23 0.5 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24412 rs3733708 PCDHA3 56145 5 140161918 NM_031497 NP_113685 C/T I318V minus 24621818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24413 rs3733708 PCDHA3 56145 5 140161918 NM_031497 NP_113685 C/T I318V minus 24621818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 3 24414 rs3733709 PCDHA3 56145 5 140161832 NM_018906 NP_061729 A/G I289T minus 24621817 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 5q31 protocadherin alpha 3 24415 rs3733709 PCDHA3 56145 5 140161832 NM_018906 NP_061729 A/G I289T minus 24621817 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 5q31 protocadherin alpha 3 24416 rs3733709 PCDHA3 56145 5 140161832 NM_018906 NP_061729 A/G I289T minus 24621817 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q31 protocadherin alpha 3 24417 rs3733709 PCDHA3 56145 5 140161832 NM_031497 NP_113685 A/G I289T minus 24621817 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 5q31 protocadherin alpha 3 24418 rs3733709 PCDHA3 56145 5 140161832 NM_031497 NP_113685 A/G I289T minus 24621817 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 5q31 protocadherin alpha 3 24419 rs3733709 PCDHA3 56145 5 140161832 NM_031497 NP_113685 A/G I289T minus 24621817 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q31 protocadherin alpha 3 24420 rs3733712 PCDHA1 56147 5 140147404 NM_018900 NP_061723 G/T N449H minus 4919707 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 "HapMap,freq" 5q31 protocadherin alpha 1 24421 rs3733712 PCDHA1 56147 5 140147404 NM_018900 NP_061723 G/T N449H minus 4919707 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 5q31 protocadherin alpha 1 24422 rs3733712 PCDHA1 56147 5 140147404 NM_031410 NP_113598 G/T N449H minus 4919707 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 "HapMap,freq" 5q31 protocadherin alpha 1 24423 rs3733712 PCDHA1 56147 5 140147404 NM_031410 NP_113598 G/T N449H minus 4919707 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 5q31 protocadherin alpha 1 24424 rs3733712 PCDHA1 56147 5 140147404 NM_031411 NP_113599 G/T N449H minus 4919707 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 "HapMap,freq" 5q31 protocadherin alpha 1 24425 rs3733712 PCDHA1 56147 5 140147404 NM_031411 NP_113599 G/T N449H minus 4919707 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 5q31 protocadherin alpha 1 24426 rs3733748 BASP1 10409 5 17328552 NM_006317 NP_006308 A/G A76V minus 4919744 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.03 107 by freq 5p15.1-p14 "brain abundant, membrane attached signal protein 1" 24427 rs3733808 MATP 51151 5 33980584 NM_016180 NP_057264 C/G V507L minus 4919804 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 5p13.3 membrane associated transporter 24428 rs3733875 NSD1 64324 5 176569846 NM_022455 NP_071900 G/T V614L plus 4919871 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.48 107 by freq 5q35.3 nuclear receptor binding SET domain protein 1 24429 rs3733875 NSD1 64324 5 176569846 NM_172349 NP_758859 G/T V345L plus 4919871 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.48 107 by freq 5q35.3 nuclear receptor binding SET domain protein 1 24430 rs3733876 RAP80 51720 5 176315601 NM_016290 NP_057374 A/G P435L plus 4919872 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.19 120 "HapMap,freq,cluster" 5q35.3 receptor associated protein 80 24431 rs3733876 RAP80 51720 5 176315601 NM_016290 NP_057374 A/G P435L plus 4919872 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.19 120 "HapMap,freq,cluster" 5q35.3 receptor associated protein 80 24432 rs3733890 BHMT 635 5 78457715 NM_001713 NP_001704 A/G R239Q plus 4919886 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.23 123 "HapMap,doubleHit,freq,cluster" 5q13.1-q15 betaine-homocysteine methyltransferase 24433 rs3733890 BHMT 635 5 78457715 NM_001713 NP_001704 A/G R239Q plus 10251468 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 5q13.1-q15 betaine-homocysteine methyltransferase 24434 rs3733890 BHMT 635 5 78457715 NM_001713 NP_001704 A/G R239Q plus 23976493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "HapMap,doubleHit,freq,cluster" 5q13.1-q15 betaine-homocysteine methyltransferase 24435 rs3733890 BHMT 635 5 78457715 NM_001713 NP_001704 A/G R239Q plus 23976493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "HapMap,doubleHit,freq,cluster" 5q13.1-q15 betaine-homocysteine methyltransferase 24436 rs3733890 BHMT 635 5 78457715 NM_001713 NP_001704 A/G R239Q plus 23976493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.36 123 "HapMap,doubleHit,freq,cluster" 5q13.1-q15 betaine-homocysteine methyltransferase 24437 rs3733905 LRAP 64167 5 96245317 NM_022350 NP_071745 C/T P214L plus 4919901 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.13 120 "by cluster,freq" 16 leukocyte-derived arginine aminopeptidase 24438 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 4919916 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.21 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24439 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 7988794 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24440 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 7988794 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24441 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 7988794 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24442 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 23905613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24443 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 23905613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24444 rs3733920 LY64 4064 5 66516130 NM_005582 NP_005573 C/G S99R plus 23905613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 24445 rs3733923 DCTN4 51164 5 150070974 NM_016221 NP_057305 A/G S438N minus 4919919 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.09 120 "by cluster,freq" 5q31-q32 dynactin 4 (p62) 24446 rs3734016 ARTS-1 51752 5 96165220 NM_016442 NP_057526 A/G E56K minus 4920012 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 107 "HapMap,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 24447 rs3734016 ARTS-1 51752 5 96165220 NM_016442 NP_057526 A/G E56K minus 4920012 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 107 "HapMap,freq" 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 24448 rs3734053 FAT2 2196 5 150902162 NM_001447 NP_001438 C/T A2907T plus 4920049 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.02 107 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24449 rs3734055 FAT2 2196 5 150925676 NM_001447 NP_001438 C/T G1004S plus 4920051 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.3 121 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24450 rs3734056 FAT2 2196 5 150925711 NM_001447 NP_001438 C/T R992Q plus 4920052 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24451 rs3734056 FAT2 2196 5 150925711 NM_001447 NP_001438 C/T R992Q plus 24198530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24452 rs3734056 FAT2 2196 5 150925711 NM_001447 NP_001438 C/T R992Q plus 24198530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24453 rs3734056 FAT2 2196 5 150925711 NM_001447 NP_001438 C/T R992Q plus 24198530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24454 rs3734061 FAT2 2196 5 150927944 NM_001447 NP_001438 A/G P248S plus 4920057 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 107 by freq 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 24455 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 4920087 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.08 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24456 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24457 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24458 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24459 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24460 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24461 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 12675691 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24462 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 24144777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24463 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 24144777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24464 rs3734091 XRCC4 7518 5 82536490 NM_003401 NP_003392 A/C A247S minus 24144777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24465 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 4920087 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.08 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24466 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24467 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24468 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24469 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24470 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24471 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 12675691 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24472 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 24144777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24473 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 24144777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24474 rs3734091 XRCC4 7518 5 82536490 NM_022406 NP_071801 A/C A247S minus 24144777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24475 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 4920087 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.08 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24476 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24477 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24478 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24479 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24480 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24481 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 12675691 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24482 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 24144777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24483 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 24144777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24484 rs3734091 XRCC4 7518 5 82536490 NM_022550 NP_072044 A/C A247S minus 24144777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 5q13-q14 X-ray repair complementing defective repair in Chinese hamster cells 4 24485 rs3734094 CSPG2 1462 5 82871521 NM_004385 NP_004376 C/G V2315L minus 4920090 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.04 107 by freq 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 24486 rs3734114 APG10L 83734 5 81390145 NM_031482 NP_113670 C/T S62P plus 4920110 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.12 123 "HapMap,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 24487 rs3734114 APG10L 83734 5 81390145 NM_031482 NP_113670 C/T S62P plus 4920110 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.16 123 "HapMap,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 24488 rs3734114 APG10L 83734 5 81390145 NM_031482 NP_113670 C/T S62P plus 23985758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 24489 rs3734114 APG10L 83734 5 81390145 NM_031482 NP_113670 C/T S62P plus 23985758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 24490 rs3734114 APG10L 83734 5 81390145 NM_031482 NP_113670 C/T S62P plus 23985758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 5q14.1 APG10 autophagy 10-like (S. cerevisiae) 24491 rs3734116 KIF20A 10112 5 137545031 NM_005733 NP_005724 C/T E63K minus 4920112 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 107 HapMap 5q31 kinesin family member 20A 24492 rs3734166 CDC25C 995 5 137693222 NM_001790 NP_001781 A/G R70C plus 4920163 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.44 123 "by cluster,freq" 5q31 cell division cycle 25C 24493 rs3734166 CDC25C 995 5 137693222 NM_001790 NP_001781 A/G R70C plus 16338848 693 EGP_SNPS PDR90 NIHPDR 180 0.34 123 "by cluster,freq" 5q31 cell division cycle 25C 24494 rs3734166 CDC25C 995 5 137693222 NM_001790 NP_001781 A/G R70C plus 23675035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 5q31 cell division cycle 25C 24495 rs3734166 CDC25C 995 5 137693222 NM_001790 NP_001781 A/G R70C plus 23675035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.47 123 "by cluster,freq" 5q31 cell division cycle 25C 24496 rs3734166 CDC25C 995 5 137693222 NM_001790 NP_001781 A/G R70C plus 23675035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 5q31 cell division cycle 25C 24497 rs3734173 PHAX 84137 5 125967308 NM_032177 NP_115553 A/G R82C minus 4920170 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.31 120 "HapMap,freq,cluster" 5q23.3 likely ortholog of mouse phosphorylated adaptor for RNA export 24498 rs3734173 PHAX 84137 5 125967308 NM_032177 NP_115553 A/G R82C minus 6025991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,freq,cluster" 5q23.3 likely ortholog of mouse phosphorylated adaptor for RNA export 24499 rs3734311 IMPG1 3617 6 76717271 NM_001563 NP_001554 C/G H518D minus 4920308 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 121 "by doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24500 rs3734312 IMPG1 3617 6 76717117 NM_001563 NP_001554 A/G K569R minus 4920309 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.21 107 by freq 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24501 rs3734313 IMPG1 3617 6 76697501 NM_001563 NP_001554 A/G R711H minus 4920310 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.29 123 "by cluster,freq" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24502 rs3734313 IMPG1 3617 6 76697501 NM_001563 NP_001554 A/G R711H minus 23973202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24503 rs3734313 IMPG1 3617 6 76697501 NM_001563 NP_001554 A/G R711H minus 23973202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24504 rs3734313 IMPG1 3617 6 76697501 NM_001563 NP_001554 A/G R711H minus 23973202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 24505 rs3734334 CPNE5 57699 6 36898850 NM_020939 NP_065990 A/G N33S minus 4920331 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 by freq 6p21.1 copine V 24506 rs3734354 SIM1 6492 6 100975500 NM_005068 NP_005059 A/C P352T minus 4920351 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.48 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24507 rs3734354 SIM1 6492 6 100975500 NM_005068 NP_005059 A/C P352T minus 23985113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24508 rs3734354 SIM1 6492 6 100975500 NM_005068 NP_005059 A/C P352T minus 23985113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24509 rs3734354 SIM1 6492 6 100975500 NM_005068 NP_005059 A/C P352T minus 23985113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24510 rs3734355 SIM1 6492 6 100975442 NM_005068 NP_005059 C/T A371V minus 4920352 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.48 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24511 rs3734355 SIM1 6492 6 100975442 NM_005068 NP_005059 C/T A371V minus 23985102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24512 rs3734355 SIM1 6492 6 100975442 NM_005068 NP_005059 C/T A371V minus 23985102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24513 rs3734355 SIM1 6492 6 100975442 NM_005068 NP_005059 C/T A371V minus 23985102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 6q16.3-q21 single-minded homolog 1 (Drosophila) 24514 rs3734401 NEDD9 4739 6 11298358 NM_006403 NP_006394 A/G T577M plus 4920398 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 107 by freq 6p25-p24 "neural precursor cell expressed, developmentally down-regulated 9" 24515 rs3734543 BTN2A1 11120 6 26576524 NM_007049 NP_008980 C/G G451A plus 4920540 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.03 107 by freq 6p22.1 "butyrophilin, subfamily 2, member A1" 24516 rs3734559 LRFN2 57497 6 40467722 XM_166372 XP_166372 A/G D770N minus 4920556 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0 107 by freq 6p21.1 leucine rich repeat and fibronectin type III domain containing 2 24517 rs3734638 HEY2 23493 6 126122045 NM_012259 NP_036391 C/T V140M minus 4920635 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 107 by freq 6q22.2-q22.33 hairy/enhancer-of-split related with YRPW motif 2 24518 rs3734707 SLC35B2 347734 6 44330696 NM_178148 NP_835361 C/G L342V plus 4920704 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.04 107 by freq 6p12.1-p11.2 "solute carrier family 35, member B2" 24519 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 4920793 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.1 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24520 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 6728931 901 AFFY AfAm 12 0.42 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24521 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 6728931 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24522 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 6728931 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24523 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 6728931 904 AFFY CEPH 12 0.08 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24524 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 6728931 905 AFFY PDpanel 48 0.17 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24525 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 23808506 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24526 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 23808506 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24527 rs3734795 AKAP12 9590 6 151766707 NM_005100 NP_005091 A/C E1689D minus 23808506 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24528 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 4920793 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.1 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24529 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 6728931 901 AFFY AfAm 12 0.42 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24530 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 6728931 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24531 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 6728931 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24532 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 6728931 904 AFFY CEPH 12 0.08 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24533 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 6728931 905 AFFY PDpanel 48 0.17 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24534 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 23808506 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24535 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 23808506 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24536 rs3734795 AKAP12 9590 6 151766707 NM_144497 NP_653080 A/C E1591D minus 23808506 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24537 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 4920795 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24538 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 6729339 901 AFFY AfAm 12 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24539 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 6729339 902 AFFY Caucasian 24 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24540 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 6729339 903 AFFY Asian 12 0.08 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24541 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 6729339 904 AFFY CEPH 12 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24542 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 6729339 905 AFFY PDpanel 48 0.06 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24543 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 24716316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24544 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 24716316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24545 rs3734797 AKAP12 9590 6 151764926 NM_005100 NP_005091 C/T V1096I minus 24716316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24546 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 4920795 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24547 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 6729339 901 AFFY AfAm 12 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24548 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 6729339 902 AFFY Caucasian 24 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24549 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 6729339 903 AFFY Asian 12 0.08 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24550 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 6729339 904 AFFY CEPH 12 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24551 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 6729339 905 AFFY PDpanel 48 0.06 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24552 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 24716316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24553 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 24716316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24554 rs3734797 AKAP12 9590 6 151764926 NM_144497 NP_653080 C/T V998I minus 24716316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24555 rs3734799 AKAP12 9590 6 151762286 NM_005100 NP_005091 G/T K216Q minus 4920797 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.37 121 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24556 rs3734799 AKAP12 9590 6 151762286 NM_144497 NP_653080 G/T K118Q minus 4920797 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.37 121 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 24557 rs3734838 TRIM31 11074 6 30188210 NM_007028 NP_008959 A/G R118C plus 4920836 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24558 rs3734838 TRIM31 11074 6 30188210 NM_007028 NP_008959 A/G R118C plus 23924315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24559 rs3734838 TRIM31 11074 6 30188210 NM_007028 NP_008959 A/G R118C plus 23924315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24560 rs3734838 TRIM31 11074 6 30188210 NM_007028 NP_008959 A/G R118C plus 23924315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24561 rs3734838 TRIM31 11074 6 30188210 NM_052816 NP_438111 A/G R118C plus 4920836 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.06 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24562 rs3734838 TRIM31 11074 6 30188210 NM_052816 NP_438111 A/G R118C plus 23924315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.09 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24563 rs3734838 TRIM31 11074 6 30188210 NM_052816 NP_438111 A/G R118C plus 23924315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24564 rs3734838 TRIM31 11074 6 30188210 NM_052816 NP_438111 A/G R118C plus 23924315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 6p21.3 tripartite motif-containing 31 24565 rs3734990 PLXNA4 57671 7 131321662 XM_039393 XP_039393 C/T R951C minus 4920988 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.03 107 by freq 7q32.3 plexin A4 24566 rs3735007 ZC3HAV1 56829 7 138189752 NM_020119 NP_064504 C/T T851I minus 4921005 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.33 123 "HapMap,doubleHit,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 24567 rs3735007 ZC3HAV1 56829 7 138189752 NM_020119 NP_064504 C/T T851I minus 14566264 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,doubleHit,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 24568 rs3735007 ZC3HAV1 56829 7 138189752 NM_020119 NP_064504 C/T T851I minus 24478660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 24569 rs3735007 ZC3HAV1 56829 7 138189752 NM_020119 NP_064504 C/T T851I minus 24478660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.3 123 "HapMap,doubleHit,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 24570 rs3735007 ZC3HAV1 56829 7 138189752 NM_020119 NP_064504 C/T T851I minus 24478660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 7q34 "zinc finger CCCH type, antiviral 1" 24571 rs3735035 PODXL 5420 7 130653214 NM_005397 NP_005388 C/T G112S plus 4921033 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.44 121 "by doubleHit,freq,cluster" 7q32-q33 podocalyxin-like 24572 rs3735042 AKR1B10 57016 7 133680973 NM_020299 NP_064695 C/T M286T plus 4921040 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 107 by freq 7q33 "aldo-keto reductase family 1, member B10 (aldose reductase)" 24573 rs3735051 CPA4 51200 7 129538353 NM_016352 NP_057436 A/C P157T plus 4921049 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 123 "by cluster,freq" 7q32 carboxypeptidase A4 24574 rs3735051 CPA4 51200 7 129538353 NM_016352 NP_057436 A/C P157T plus 23994165 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q32 carboxypeptidase A4 24575 rs3735051 CPA4 51200 7 129538353 NM_016352 NP_057436 A/C P157T plus 23994165 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q32 carboxypeptidase A4 24576 rs3735051 CPA4 51200 7 129538353 NM_016352 NP_057436 A/C P157T plus 23994165 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 7q32 carboxypeptidase A4 24577 rs3735080 hIAN7 168537 7 149654957 NM_153236 NP_694968 A/G R83C minus 4921078 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.17 123 "by cluster,freq" 7q36.1 immune associated nucleotide 24578 rs3735080 hIAN7 168537 7 149654957 NM_153236 NP_694968 A/G R83C minus 24346977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7q36.1 immune associated nucleotide 24579 rs3735080 hIAN7 168537 7 149654957 NM_153236 NP_694968 A/G R83C minus 24346977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q36.1 immune associated nucleotide 24580 rs3735080 hIAN7 168537 7 149654957 NM_153236 NP_694968 A/G R83C minus 24346977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 7q36.1 immune associated nucleotide 24581 rs3735099 CHST12 55501 7 2245670 NM_018641 NP_061111 A/C P52H plus 4921097 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.18 123 "by cluster,freq" 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 24582 rs3735099 CHST12 55501 7 2245670 NM_018641 NP_061111 A/C P52H plus 23918419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 24583 rs3735099 CHST12 55501 7 2245670 NM_018641 NP_061111 A/C P52H plus 23918419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 24584 rs3735099 CHST12 55501 7 2245670 NM_018641 NP_061111 A/C P52H plus 23918419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 24585 rs3735100 CHST12 55501 7 2245696 NM_018641 NP_061111 A/T T61S plus 4921098 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.18 121 "by doubleHit,freq,cluster" 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 24586 rs3735133 CARD11 84433 7 2736068 NM_032415 NP_115791 A/G S687L plus 4921131 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0 107 by freq 7p22 "caspase recruitment domain family, member 11" 24587 rs3735134 CARD11 84433 7 2736140 NM_032415 NP_115791 A/G T663M plus 4921132 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 107 by freq 7p22 "caspase recruitment domain family, member 11" 24588 rs3735135 CDC2L5 8621 7 39800724 NM_003718 NP_003709 C/T T500A minus 4921133 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.31 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24589 rs3735135 CDC2L5 8621 7 39800724 NM_003718 NP_003709 C/T T500A minus 19715663 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24590 rs3735135 CDC2L5 8621 7 39800724 NM_003718 NP_003709 C/T T500A minus 24009604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24591 rs3735135 CDC2L5 8621 7 39800724 NM_003718 NP_003709 C/T T500A minus 24009604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24592 rs3735135 CDC2L5 8621 7 39800724 NM_003718 NP_003709 C/T T500A minus 24009604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24593 rs3735135 CDC2L5 8621 7 39800724 NM_031267 NP_112557 C/T T500A minus 4921133 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.31 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24594 rs3735135 CDC2L5 8621 7 39800724 NM_031267 NP_112557 C/T T500A minus 19715663 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24595 rs3735135 CDC2L5 8621 7 39800724 NM_031267 NP_112557 C/T T500A minus 24009604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24596 rs3735135 CDC2L5 8621 7 39800724 NM_031267 NP_112557 C/T T500A minus 24009604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24597 rs3735135 CDC2L5 8621 7 39800724 NM_031267 NP_112557 C/T T500A minus 24009604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24598 rs3735137 CDC2L5 8621 7 39764687 NM_003718 NP_003709 A/G L403F minus 4921135 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.02 107 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24599 rs3735137 CDC2L5 8621 7 39764687 NM_031267 NP_112557 A/G L403F minus 4921135 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.02 107 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 24600 rs3735156 MLL3 58508 7 151386716 NM_170606 NP_733751 C/G R526P minus 4921154 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.09 120 "HapMap,doubleHit,freq,cluster" 7q34-q36 myeloid/lymphoid or mixed-lineage leukemia 3 24601 rs3735156 MLL3 58508 7 151386716 NM_170606 NP_733751 C/G R526P minus 14582202 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,doubleHit,freq,cluster" 7q34-q36 myeloid/lymphoid or mixed-lineage leukemia 3 24602 rs3735252 LMTK2 22853 7 97381228 NM_014916 NP_055731 C/G P30A plus 4921250 738 YUSUKE JBIC-ALLELE Japanese (752) 918 0.1 123 "by doubleHit,freq,cluster" 7q22.1 lemur tyrosine kinase 2 24603 rs3735252 LMTK2 22853 7 97381228 NM_014916 NP_055731 C/G P30A plus 23911891 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 7q22.1 lemur tyrosine kinase 2 24604 rs3735252 LMTK2 22853 7 97381228 NM_014916 NP_055731 C/G P30A plus 23911891 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 7q22.1 lemur tyrosine kinase 2 24605 rs3735252 LMTK2 22853 7 97381228 NM_014916 NP_055731 C/G P30A plus 23911891 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 7q22.1 lemur tyrosine kinase 2 24606 rs3735354 TBXAS1 6916 7 139160099 NM_001061 NP_001052 C/T E388K minus 4921352 738 YUSUKE JBIC-ALLELE Japanese (752) 1122 0.01 121 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 24607 rs3735354 TBXAS1 6916 7 139160099 NM_030984 NP_112246 C/T E388K minus 4921352 738 YUSUKE JBIC-ALLELE Japanese (752) 1122 0.01 121 "by cluster,freq" 7q34-q35 "thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A)" 24608 rs3735384 AOAH 313 7 36444907 NM_001637 NP_001628 A/G A166T minus 4921382 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 123 "by cluster,freq" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 24609 rs3735384 AOAH 313 7 36444907 NM_001637 NP_001628 A/G A166T minus 24004794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 24610 rs3735384 AOAH 313 7 36444907 NM_001637 NP_001628 A/G A166T minus 24004794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 24611 rs3735384 AOAH 313 7 36444907 NM_001637 NP_001628 A/G A166T minus 24004794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.05 123 "by cluster,freq" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 24612 rs3735615 7A5 346389 7 19953957 NM_182762 NP_877439 C/G R804T minus 23706081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 24613 rs3735615 7A5 346389 7 19953957 NM_182762 NP_877439 C/G R804T minus 23706081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 24614 rs3735615 7A5 346389 7 19953957 NM_182762 NP_877439 C/G R804T minus 23706081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 24615 rs3735653 EN2 2020 7 154750909 NM_001427 NP_001418 A/G L121F minus 4921651 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.38 121 "by doubleHit,freq,cluster" 7q36 engrailed homolog 2 24616 rs3735754 SCARA3 51435 8 27572874 NM_016240 NP_057324 C/T R423Q minus 4921752 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.11 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24617 rs3735754 SCARA3 51435 8 27572874 NM_016240 NP_057324 C/T R423Q minus 4921752 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24618 rs3735754 SCARA3 51435 8 27572874 NM_016240 NP_057324 C/T R423Q minus 24085961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24619 rs3735754 SCARA3 51435 8 27572874 NM_016240 NP_057324 C/T R423Q minus 24085961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24620 rs3735754 SCARA3 51435 8 27572874 NM_016240 NP_057324 C/T R423Q minus 24085961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24621 rs3735754 SCARA3 51435 8 27572874 NM_182826 NP_878185 C/T R423Q minus 4921752 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.11 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24622 rs3735754 SCARA3 51435 8 27572874 NM_182826 NP_878185 C/T R423Q minus 4921752 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24623 rs3735754 SCARA3 51435 8 27572874 NM_182826 NP_878185 C/T R423Q minus 24085961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24624 rs3735754 SCARA3 51435 8 27572874 NM_182826 NP_878185 C/T R423Q minus 24085961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24625 rs3735754 SCARA3 51435 8 27572874 NM_182826 NP_878185 C/T R423Q minus 24085961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 8p21 "scavenger receptor class A, member 3" 24626 rs3735774 NRG1 3084 8 32624914 NM_013959 NP_039253 A/G G46R plus 4921772 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 123 "by cluster,freq" 8p21-p12 neuregulin 1 24627 rs3735774 NRG1 3084 8 32624914 NM_013959 NP_039253 A/G G46R plus 24035158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p21-p12 neuregulin 1 24628 rs3735774 NRG1 3084 8 32624914 NM_013959 NP_039253 A/G G46R plus 24035158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8p21-p12 neuregulin 1 24629 rs3735774 NRG1 3084 8 32624914 NM_013959 NP_039253 A/G G46R plus 24035158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 8p21-p12 neuregulin 1 24630 rs3735784 ZNF16 7564 8 146128664 NM_006958 NP_008889 A/G E105K minus 4921782 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.02 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24631 rs3735784 ZNF16 7564 8 146128664 NM_006958 NP_008889 A/G E105K minus 4921782 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24632 rs3735784 ZNF16 7564 8 146128664 NM_006958 NP_008889 A/G E105K minus 23530114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24633 rs3735784 ZNF16 7564 8 146128664 NM_006958 NP_008889 A/G E105K minus 23530114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24634 rs3735784 ZNF16 7564 8 146128664 NM_006958 NP_008889 A/G E105K minus 23530114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24635 rs3735786 ZNF16 7564 8 146128297 NM_006958 NP_008889 A/G R227H minus 4921784 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24636 rs3735786 ZNF16 7564 8 146128297 NM_006958 NP_008889 A/G R227H minus 4921784 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24637 rs3735786 ZNF16 7564 8 146128297 NM_006958 NP_008889 A/G R227H minus 23530105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24638 rs3735786 ZNF16 7564 8 146128297 NM_006958 NP_008889 A/G R227H minus 23530105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24639 rs3735786 ZNF16 7564 8 146128297 NM_006958 NP_008889 A/G R227H minus 23530105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 8q24 zinc finger protein 16 (KOX 9) 24640 rs3735854 LRRC14 9684 8 145717498 NM_014665 NP_055480 C/T G437D minus 4921852 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 107 HapMap 8q24.3 leucine rich repeat containing 14 24641 rs3735854 LRRC14 9684 8 145717498 NM_014665 NP_055480 C/T G437D minus 4921852 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 107 HapMap 8q24.3 leucine rich repeat containing 14 24642 rs3735971 CNGB3 54714 8 87657330 NM_019098 NP_061971 C/T P750S minus 4921969 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q21-q22 cyclic nucleotide gated channel beta 3 24643 rs3736001 PSCA 8000 8 143759809 NM_005672 NP_005663 A/G E39K plus 4921999 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.11 123 "by cluster,freq" 8q24.2 prostate stem cell antigen 24644 rs3736001 PSCA 8000 8 143759809 NM_005672 NP_005663 A/G E39K plus 23962047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8q24.2 prostate stem cell antigen 24645 rs3736001 PSCA 8000 8 143759809 NM_005672 NP_005663 A/G E39K plus 23962047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8q24.2 prostate stem cell antigen 24646 rs3736001 PSCA 8000 8 143759809 NM_005672 NP_005663 A/G E39K plus 23962047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 8q24.2 prostate stem cell antigen 24647 rs3736032 MSCP 51312 8 23479642 NM_018579 NP_061049 A/G R96Q plus 4922030 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.18 123 "HapMap,doubleHit,freq,cluster" 8p21.2 mitochondrial solute carrier protein 24648 rs3736032 MSCP 51312 8 23479642 NM_018579 NP_061049 A/G R96Q plus 10457488 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 123 "HapMap,doubleHit,freq,cluster" 8p21.2 mitochondrial solute carrier protein 24649 rs3736032 MSCP 51312 8 23479642 NM_018579 NP_061049 A/G R96Q plus 24041353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 8p21.2 mitochondrial solute carrier protein 24650 rs3736032 MSCP 51312 8 23479642 NM_018579 NP_061049 A/G R96Q plus 24041353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 8p21.2 mitochondrial solute carrier protein 24651 rs3736032 MSCP 51312 8 23479642 NM_018579 NP_061049 A/G R96Q plus 24041353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21.2 mitochondrial solute carrier protein 24652 rs3736228 LRP5 4041 11 67957871 NM_002335 NP_002326 C/T A1330V plus 4922226 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.27 113 "HapMap,freq,cluster" 11q13.4 low density lipoprotein receptor-related protein 5 24653 rs3736228 LRP5 4041 11 67957871 NM_002335 NP_002326 C/T A1330V plus 6905351 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.12 113 "HapMap,freq,cluster" 11q13.4 low density lipoprotein receptor-related protein 5 24654 rs3736252 COL27A1 85301 9 114151298 NM_032888 NP_116277 C/T M1808V minus 4922250 738 YUSUKE JBIC-ALLELE Japanese (752) 1450 0.25 123 "HapMap,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 24655 rs3736252 COL27A1 85301 9 114151298 NM_032888 NP_116277 C/T M1808V minus 4922250 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 24656 rs3736252 COL27A1 85301 9 114151298 NM_032888 NP_116277 C/T M1808V minus 24055424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 24657 rs3736252 COL27A1 85301 9 114151298 NM_032888 NP_116277 C/T M1808V minus 24055424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 24658 rs3736252 COL27A1 85301 9 114151298 NM_032888 NP_116277 C/T M1808V minus 24055424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 24659 rs3736265 PPARGC1A 10891 4 23490976 NM_013261 NP_037393 A/G T612M plus 4922263 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.21 107 by freq 4p15.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, alpha" 24660 rs3736422 TMF1 7110 3 69170511 NM_007114 NP_009045 C/T Q682R plus 4922420 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.02 107 HapMap 3p21-p12 TATA element modulatory factor 1 24661 rs3736422 TMF1 7110 3 69170511 NM_007114 NP_009045 C/T Q682R plus 4922420 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 107 HapMap 3p21-p12 TATA element modulatory factor 1 24662 rs3736433 HSXIAPAF1 54739 17 6614834 NM_017523 NP_059993 A/C R219I minus 4922431 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 107 by freq 17p13.2 XIAP associated factor-1 24663 rs3736433 HSXIAPAF1 54739 17 6614834 NM_199139 NP_954590 A/C R200I minus 4922431 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 107 by freq 17p13.2 XIAP associated factor-1 24664 rs3736508 BHC80 51317 11 45931706 NM_016621 NP_057705 C/T R348H plus 4922506 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.29 123 "HapMap,freq" 11p11.2 BRAF35/HDAC2 complex (80 kDa) 24665 rs3736508 BHC80 51317 11 45931706 NM_016621 NP_057705 C/T R348H plus 4922506 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,freq" 11p11.2 BRAF35/HDAC2 complex (80 kDa) 24666 rs3736508 BHC80 51317 11 45931706 NM_016621 NP_057705 C/T R348H plus 24207338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq" 11p11.2 BRAF35/HDAC2 complex (80 kDa) 24667 rs3736508 BHC80 51317 11 45931706 NM_016621 NP_057705 C/T R348H plus 24207338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "HapMap,freq" 11p11.2 BRAF35/HDAC2 complex (80 kDa) 24668 rs3736508 BHC80 51317 11 45931706 NM_016621 NP_057705 C/T R348H plus 24207338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "HapMap,freq" 11p11.2 BRAF35/HDAC2 complex (80 kDa) 24669 rs3736518 HSGT1 11319 10 74569140 NM_007265 NP_009196 C/G E452Q plus 4922516 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.24 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 24670 rs3736518 HSGT1 11319 10 74569140 NM_007265 NP_009196 C/G E452Q plus 23970135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 24671 rs3736518 HSGT1 11319 10 74569140 NM_007265 NP_009196 C/G E452Q plus 23970135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 24672 rs3736518 HSGT1 11319 10 74569140 NM_007265 NP_009196 C/G E452Q plus 23970135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 10q22.3 suppressor of S. cerevisiae gcr2 24673 rs3736563 UBP1 7342 3 33433270 NM_014517 NP_055332 C/T N109S plus 23873858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 3p22.3 upstream binding protein 1 (LBP-1a) 24674 rs3736563 UBP1 7342 3 33433270 NM_014517 NP_055332 C/T N109S plus 23873858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 3p22.3 upstream binding protein 1 (LBP-1a) 24675 rs3736563 UBP1 7342 3 33433270 NM_014517 NP_055332 C/T N109S plus 23873858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 3p22.3 upstream binding protein 1 (LBP-1a) 24676 rs3736633 COL4A4 1286 2 227780104 NM_000092 NP_000083 A/G P482S plus 4922631 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 123 "HapMap,doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 24677 rs3736633 COL4A4 1286 2 227780104 NM_000092 NP_000083 A/G P482S plus 14500944 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 24678 rs3736633 COL4A4 1286 2 227780104 NM_000092 NP_000083 A/G P482S plus 24273559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 24679 rs3736633 COL4A4 1286 2 227780104 NM_000092 NP_000083 A/G P482S plus 24273559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 24680 rs3736633 COL4A4 1286 2 227780104 NM_000092 NP_000083 A/G P482S plus 24273559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 24681 rs3736689 MOV10L1 54456 22 48875493 NM_018995 NP_061868 A/G S683G plus 4922687 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.01 107 HapMap 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 24682 rs3736689 MOV10L1 54456 22 48875493 NM_018995 NP_061868 A/G S683G plus 4922687 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 24683 rs3736781 BTN1A1 696 6 26613341 NM_001732 NP_001723 A/G A213T plus 4922780 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.29 121 "by doubleHit,freq,cluster" 6p22.1 "butyrophilin, subfamily 1, member A1" 24684 rs3736930 ATP6V1G3 127124 1 195237487 NM_133326 NP_579872 C/T R36Q plus 4922929 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.05 123 "by cluster,freq" 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 24685 rs3736930 ATP6V1G3 127124 1 195237487 NM_133326 NP_579872 C/T R36Q plus 23868951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 24686 rs3736930 ATP6V1G3 127124 1 195237487 NM_133326 NP_579872 C/T R36Q plus 23868951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 24687 rs3736930 ATP6V1G3 127124 1 195237487 NM_133326 NP_579872 C/T R36Q plus 23868951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 24688 rs3736946 ACSL5 51703 10 114159266 NM_016234 NP_057318 C/T M238V minus 4922945 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.17 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24689 rs3736946 ACSL5 51703 10 114159266 NM_016234 NP_057318 C/T M238V minus 24589071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24690 rs3736946 ACSL5 51703 10 114159266 NM_016234 NP_057318 C/T M238V minus 24589071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24691 rs3736946 ACSL5 51703 10 114159266 NM_016234 NP_057318 C/T M238V minus 24589071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24692 rs3736946 ACSL5 51703 10 114159266 NM_203379 NP_976313 C/T M182V minus 4922945 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.17 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24693 rs3736946 ACSL5 51703 10 114159266 NM_203379 NP_976313 C/T M182V minus 24589071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24694 rs3736946 ACSL5 51703 10 114159266 NM_203379 NP_976313 C/T M182V minus 24589071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24695 rs3736946 ACSL5 51703 10 114159266 NM_203379 NP_976313 C/T M182V minus 24589071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24696 rs3736946 ACSL5 51703 10 114159266 NM_203380 NP_976314 C/T M182V minus 4922945 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.17 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24697 rs3736946 ACSL5 51703 10 114159266 NM_203380 NP_976314 C/T M182V minus 24589071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24698 rs3736946 ACSL5 51703 10 114159266 NM_203380 NP_976314 C/T M182V minus 24589071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24699 rs3736946 ACSL5 51703 10 114159266 NM_203380 NP_976314 C/T M182V minus 24589071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 10q25.1-q25.2 acyl-CoA synthetase long-chain family member 5 24700 rs3737002 CR1 1378 1 204149168 NM_000573 NP_000564 C/T T1408M plus 4923001 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24701 rs3737002 CR1 1378 1 204149168 NM_000573 NP_000564 C/T T1408M plus 24141999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24702 rs3737002 CR1 1378 1 204149168 NM_000573 NP_000564 C/T T1408M plus 24141999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24703 rs3737002 CR1 1378 1 204149168 NM_000573 NP_000564 C/T T1408M plus 24141999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24704 rs3737002 CR1 1378 1 204149168 NM_000651 NP_000642 C/T T1858M plus 4923001 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.38 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24705 rs3737002 CR1 1378 1 204149168 NM_000651 NP_000642 C/T T1858M plus 24141999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24706 rs3737002 CR1 1378 1 204149168 NM_000651 NP_000642 C/T T1858M plus 24141999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24707 rs3737002 CR1 1378 1 204149168 NM_000651 NP_000642 C/T T1858M plus 24141999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 24708 rs3737084 PANK2 80025 20 3818124 NM_153638 NP_705902 C/G G3A plus 4923083 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.22 116 "by cluster,freq" 20p13 pantothenate kinase 2 (Hallervorden-Spatz syndrome) 24709 rs3737084 PANK2 80025 20 3818124 NM_153639 NP_705903 C/G G3A plus 4923083 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.22 116 "by cluster,freq" 20p13 pantothenate kinase 2 (Hallervorden-Spatz syndrome) 24710 rs3737137 LAMA5 3911 20 60331116 NM_005560 NP_005551 A/G R2053H minus 4923136 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1382 0.18 114 "by cluster,freq" 20q13.2-q13.3 "laminin, alpha 5" 24711 rs3737184 ARMC4 55130 10 28141461 NM_018076 NP_060546 A/C A1041S plus 4923183 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.28 123 "by cluster,freq" 10p12.1-p11.23 armadillo repeat containing 4 24712 rs3737184 ARMC4 55130 10 28141461 NM_018076 NP_060546 A/C A1041S plus 24202072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10p12.1-p11.23 armadillo repeat containing 4 24713 rs3737184 ARMC4 55130 10 28141461 NM_018076 NP_060546 A/C A1041S plus 24202072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10p12.1-p11.23 armadillo repeat containing 4 24714 rs3737184 ARMC4 55130 10 28141461 NM_018076 NP_060546 A/C A1041S plus 24202072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 10p12.1-p11.23 armadillo repeat containing 4 24715 rs3737240 ECM1 1893 1 147296428 NM_004425 NP_004416 C/T T130M plus 4923239 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.29 107 "by doubleHit,freq" 1q21 extracellular matrix protein 1 24716 rs3737240 ECM1 1893 1 147296428 NM_022664 NP_073155 C/T T130M plus 4923239 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.29 107 "by doubleHit,freq" 1q21 extracellular matrix protein 1 24717 rs3737274 MYO3A 53904 10 26350462 NM_017433 NP_059129 C/T D204N minus 4923273 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 107 by freq 10p11.1 myosin IIIA 24718 rs3737311 IKBKAP 8518 9 108771699 NM_003640 NP_003631 A/G R70C plus 4923310 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 24719 rs3737392 LMAN1 3998 18 55157057 NM_005570 NP_005561 A/G I355T plus 4923391 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 18q21.3-q22 "lectin, mannose-binding, 1" 24720 rs3737553 GC 2638 4 72983332 NM_000583 NP_000574 C/T H445Y minus 6903805 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 24721 rs3737553 GC 2638 4 72983332 NM_000583 NP_000574 C/T H445Y minus 6903805 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 24722 rs3737553 GC 2638 4 72983332 NM_000583 NP_000574 C/T H445Y minus 6903805 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 24723 rs3737553 GC 2638 4 72983332 NM_000583 NP_000574 C/T H445Y minus 6903805 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 24724 rs3737553 GC 2638 4 72983332 NM_000583 NP_000574 C/T H445Y minus 6903805 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 116 "by cluster,freq" 4q12-q13 group-specific component (vitamin D binding protein) 24725 rs3737564 TNNI3K 51086 1 74641191 NM_015978 NP_057062 C/T I686T plus 4923563 738 YUSUKE JBIC-ALLELE Japanese (752) 1284 0.04 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 24726 rs3737564 TNNI3K 51086 1 74641191 NM_015978 NP_057062 C/T I686T plus 23192123 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 24727 rs3737564 TNNI3K 51086 1 74641191 NM_015978 NP_057062 C/T I686T plus 23192123 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 24728 rs3737564 TNNI3K 51086 1 74641191 NM_015978 NP_057062 C/T I686T plus 23192123 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p31.1 TNNI3 interacting kinase 24729 rs3737657 ETNK2 55224 1 200842204 NM_018208 NP_060678 A/G R227Q minus 4923656 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by cluster,freq" 1q32.1 putative ethanolamine kinase 24730 rs3737657 ETNK2 55224 1 200842204 NM_018208 NP_060678 A/G R227Q minus 24158552 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q32.1 putative ethanolamine kinase 24731 rs3737657 ETNK2 55224 1 200842204 NM_018208 NP_060678 A/G R227Q minus 24158552 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32.1 putative ethanolamine kinase 24732 rs3737657 ETNK2 55224 1 200842204 NM_018208 NP_060678 A/G R227Q minus 24158552 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1q32.1 putative ethanolamine kinase 24733 rs3737703 ELA2B 51032 1 15559149 NM_015849 NP_056933 A/G G235S plus 4923702 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.01 107 by freq 1p36.13 pancreatic elastase IIB 24734 rs3737786 PVRL4 81607 1 157862735 NM_030916 NP_112178 A/G F53L plus 4923785 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 107 by freq 1q22-q23.2 poliovirus receptor-related 4 24735 rs3737821 COL9A2 1298 1 40437437 NM_001852 NP_001843 A/G V581I minus 4923820 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.04 116 "by cluster,freq" 1p33-p32 "collagen, type IX, alpha 2" 24736 rs3737925 FMO4 2329 1 168035302 NM_002022 NP_002013 A/T T308S minus 4923924 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 by freq 1q23-q25 flavin containing monooxygenase 4 24737 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.48 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24738 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 901 AFFY AfAm 12 0.08 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24739 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 902 AFFY Caucasian 24 0.21 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24740 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 903 AFFY Asian 12 0.42 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24741 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 904 AFFY CEPH 12 0.42 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24742 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 4923999 905 AFFY PDpanel 42 0.43 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24743 rs3738000 NEK11 79858 3 132430133 NM_024800 NP_079076 A/T E488V plus 21905951 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 121 "HapMap,freq,cluster" 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 24744 rs3738053 GBP2 2634 1 89291962 NM_004120 NP_004111 A/G S303G minus 4924052 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.23 107 by freq 1p22.2 "guanylate binding protein 2, interferon-inducible" 24745 rs3738099 ALPL 249 1 21640041 NM_000478 NP_000469 A/G Y263H minus 4924098 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.45 123 "by cluster,freq" 1p36.1-p34 "alkaline phosphatase, liver/bone/kidney" 24746 rs3738099 ALPL 249 1 21640041 NM_000478 NP_000469 A/G Y263H minus 23844815 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1p36.1-p34 "alkaline phosphatase, liver/bone/kidney" 24747 rs3738099 ALPL 249 1 21640041 NM_000478 NP_000469 A/G Y263H minus 23844815 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 1p36.1-p34 "alkaline phosphatase, liver/bone/kidney" 24748 rs3738099 ALPL 249 1 21640041 NM_000478 NP_000469 A/G Y263H minus 23844815 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 1p36.1-p34 "alkaline phosphatase, liver/bone/kidney" 24749 rs3738115 QSCN6 5768 1 176897356 NM_002826 NP_002817 G/T N591H minus 4924114 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.3 120 "by cluster,freq" 1q24 quiescin Q6 24750 rs3738136 PINK1 65018 1 20717417 NM_032409 NP_115785 A/G A340T plus 4924135 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.24 120 "by cluster,freq" 1p36 PTEN induced putative kinase 1 24751 rs3738270 DKFZp434B1231 91156 1 197926776 NM_178275 NP_840059 C/T H712Y plus 4924269 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.16 123 "by doubleHit,freq,cluster" 1q32.1 eEF1A2 binding protein 24752 rs3738270 DKFZp434B1231 91156 1 197926776 NM_178275 NP_840059 C/T H712Y plus 24247821 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q32.1 eEF1A2 binding protein 24753 rs3738270 DKFZp434B1231 91156 1 197926776 NM_178275 NP_840059 C/T H712Y plus 24247821 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1q32.1 eEF1A2 binding protein 24754 rs3738270 DKFZp434B1231 91156 1 197926776 NM_178275 NP_840059 C/T H712Y plus 24247821 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q32.1 eEF1A2 binding protein 24755 rs3738281 LAD1 3898 1 198089961 NM_005558 NP_005549 A/C A56S plus 4924280 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.11 107 by freq 1q25.1-q32.3 ladinin 1 24756 rs3738283 CSRP1 1465 1 198189728 NM_004078 NP_004069 A/T K108I minus 4924282 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.07 120 "by cluster,freq" 1q32 cysteine and glycine-rich protein 1 24757 rs3738346 GJB4 127534 1 34896559 NM_153212 NP_694944 A/C E204A plus 4924346 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.16 107 by freq 1p34.3 "gap junction protein, beta 4 (connexin 30.3)" 24758 rs3738372 CAPN2 824 1 220260815 NM_001748 NP_001739 G/T K568Q minus 24635280 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q41-q42 "calpain 2, (m/II) large subunit" 24759 rs3738372 CAPN2 824 1 220260815 NM_001748 NP_001739 G/T K568Q minus 24635280 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1q41-q42 "calpain 2, (m/II) large subunit" 24760 rs3738372 CAPN2 824 1 220260815 NM_001748 NP_001739 G/T K568Q minus 24635280 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q41-q42 "calpain 2, (m/II) large subunit" 24761 rs3738401 DISC1 27185 1 228137030 NM_018662 NP_061132 A/G R264Q plus 4924401 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.27 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 24762 rs3738401 DISC1 27185 1 228137030 NM_018662 NP_061132 A/G R264Q plus 23888549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 24763 rs3738401 DISC1 27185 1 228137030 NM_018662 NP_061132 A/G R264Q plus 23888549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 24764 rs3738401 DISC1 27185 1 228137030 NM_018662 NP_061132 A/G R264Q plus 23888549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 24765 rs3738413 TRIM45 80263 1 117371394 NM_025188 NP_079464 C/T R413Q plus 4924413 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.11 121 "by doubleHit,freq,cluster" 1p12 tripartite motif-containing 45 24766 rs3738496 LEPRE1 64175 1 42881962 NM_022356 NP_071751 A/T F710Y plus 4924496 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.24 123 "by cluster,freq" 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24767 rs3738496 LEPRE1 64175 1 42881962 NM_022356 NP_071751 A/T F710Y plus 23839483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24768 rs3738496 LEPRE1 64175 1 42881962 NM_022356 NP_071751 A/T F710Y plus 23839483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24769 rs3738496 LEPRE1 64175 1 42881962 NM_022356 NP_071751 A/T F710Y plus 23839483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24770 rs3738497 LEPRE1 64175 1 42882161 NM_022356 NP_071751 G/T Q644K plus 4924497 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24771 rs3738501 LEPRE1 64175 1 42887090 NM_022356 NP_071751 C/G P506R plus 4924501 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0 107 by freq 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 24772 rs3738534 NID 4811 1 232513533 NM_002508 NP_002499 C/T Q669R plus 4924534 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 107 by freq 1q43 nidogen (enactin) 24773 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.35 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24774 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 901 AFFY AfAm 12 0.25 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24775 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 902 AFFY Caucasian 24 0.04 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24776 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 903 AFFY Asian 12 0.08 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24777 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 904 AFFY CEPH 10 0.3 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24778 rs3738671 TRIT1 54802 1 39984981 NM_017646 NP_060116 A/T F202L minus 4924671 905 AFFY PDpanel 46 0.13 107 by freq 1p35.3-p34.1 tRNA isopentenyltransferase 1 24779 rs3738766 GNAT2 2780 1 109863437 NM_005272 NP_005263 A/C L107I minus 4924766 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.28 123 "by cluster,freq" 1p13.1 "guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2" 24780 rs3738766 GNAT2 2780 1 109863437 NM_005272 NP_005263 A/C L107I minus 23867670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 1p13.1 "guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2" 24781 rs3738766 GNAT2 2780 1 109863437 NM_005272 NP_005263 A/C L107I minus 23867670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1p13.1 "guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2" 24782 rs3738766 GNAT2 2780 1 109863437 NM_005272 NP_005263 A/C L107I minus 23867670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 1p13.1 "guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2" 24783 rs3738880 GLI2 2736 2 121463186 NM_030379 NP_084655 A/C A828S minus 4924880 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 121 "by doubleHit,freq,cluster" 2q14 GLI-Kruppel family member GLI2 24784 rs3738880 GLI2 2736 2 121463186 NM_030379 NP_084655 A/C A828S minus 5445581 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,freq,cluster" 2q14 GLI-Kruppel family member GLI2 24785 rs3738880 GLI2 2736 2 121463186 NM_030380 NP_084656 A/C A811S minus 4924880 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 121 "by doubleHit,freq,cluster" 2q14 GLI-Kruppel family member GLI2 24786 rs3738880 GLI2 2736 2 121463186 NM_030380 NP_084656 A/C A811S minus 5445581 1303 SEQUENOM CEPH CEPH (92) 92 1 121 "by doubleHit,freq,cluster" 2q14 GLI-Kruppel family member GLI2 24787 rs3738885 BARD1 580 2 215471382 NM_000465 NP_000456 C/G S241C minus 4924885 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 107 by freq 2q34-q35 BRCA1 associated RING domain 1 24788 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24789 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24790 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24791 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24792 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24793 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 5586279 1303 SEQUENOM CEPH CEPH (92) 92 0.01 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24794 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 24349914 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24795 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 24349914 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24796 rs3738888 BARD1 580 2 215420670 NM_000465 NP_000456 C/T R658C minus 24349914 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 2q34-q35 BRCA1 associated RING domain 1 24797 rs3738918 ITGAV 3685 2 187336972 NM_002210 NP_002201 A/G I405V plus 4924918 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q31-q32 "integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)" 24798 rs3738918 ITGAV 3685 2 187336972 NM_002210 NP_002201 A/G I405V plus 23699420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2q31-q32 "integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)" 24799 rs3738918 ITGAV 3685 2 187336972 NM_002210 NP_002201 A/G I405V plus 23699420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 2q31-q32 "integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)" 24800 rs3738918 ITGAV 3685 2 187336972 NM_002210 NP_002201 A/G I405V plus 23699420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 2q31-q32 "integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)" 24801 rs3738952 CUL3 8452 2 225187983 NM_003590 NP_003581 A/G V567I minus 4924952 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.31 123 "by doubleHit,freq,cluster" 2q36.3 cullin 3 24802 rs3738952 CUL3 8452 2 225187983 NM_003590 NP_003581 A/G V567I minus 24165575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q36.3 cullin 3 24803 rs3738952 CUL3 8452 2 225187983 NM_003590 NP_003581 A/G V567I minus 24165575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 2q36.3 cullin 3 24804 rs3738952 CUL3 8452 2 225187983 NM_003590 NP_003581 A/G V567I minus 24165575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 2q36.3 cullin 3 24805 rs3739011 TBC1D8 11138 2 101082902 NM_007063 NP_008994 C/T M865V plus 4925011 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 123 "by cluster,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 24806 rs3739011 TBC1D8 11138 2 101082902 NM_007063 NP_008994 C/T M865V plus 23875919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 24807 rs3739011 TBC1D8 11138 2 101082902 NM_007063 NP_008994 C/T M865V plus 23875919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 24808 rs3739011 TBC1D8 11138 2 101082902 NM_007063 NP_008994 C/T M865V plus 23875919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 2q12.1 "TBC1 domain family, member 8 (with GRAM domain)" 24809 rs3739038 LRRFIP1 9208 2 238454703 NM_004735 NP_004726 C/G H759D minus 23887289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 2q37.3 leucine rich repeat (in FLII) interacting protein 1 24810 rs3739038 LRRFIP1 9208 2 238454703 NM_004735 NP_004726 C/G H759D minus 23887289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 2q37.3 leucine rich repeat (in FLII) interacting protein 1 24811 rs3739038 LRRFIP1 9208 2 238454703 NM_004735 NP_004726 C/G H759D minus 23887289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 2q37.3 leucine rich repeat (in FLII) interacting protein 1 24812 rs3739041 LRRFIP1 9208 2 238454253 NM_004735 NP_004726 C/T K609E minus 4925041 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.09 107 by freq 2q37.3 leucine rich repeat (in FLII) interacting protein 1 24813 rs3739061 HES6 55502 2 238929490 NM_018645 NP_061115 C/T R218Q plus 4925061 738 YUSUKE JBIC-ALLELE Japanese (752) 1088 0.13 107 by freq 2q37.3 hairy and enhancer of split 6 (Drosophila) 24814 rs3739070 TRAF3IP1 26146 2 239088268 NM_015650 NP_056465 A/C M620L plus 4925070 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 107 by freq 2q37.3 TNF receptor-associated factor 3 interacting protein 1 24815 rs3739112 GALNT5 11227 2 157940332 NM_014568 NP_055383 A/G P77L minus 4925112 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q24.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 24816 rs3739124 PTPN18 26469 2 130843881 NM_014369 NP_055184 C/T M193V minus 4925124 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.03 123 by freq 2q21.2 "protein tyrosine phosphatase, non-receptor type 18 (brain-derived)" 24817 rs3739124 PTPN18 26469 2 130843881 NM_014369 NP_055184 C/T M193V minus 24265289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 2q21.2 "protein tyrosine phosphatase, non-receptor type 18 (brain-derived)" 24818 rs3739124 PTPN18 26469 2 130843881 NM_014369 NP_055184 C/T M193V minus 24265289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2q21.2 "protein tyrosine phosphatase, non-receptor type 18 (brain-derived)" 24819 rs3739124 PTPN18 26469 2 130843881 NM_014369 NP_055184 C/T M193V minus 24265289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 2q21.2 "protein tyrosine phosphatase, non-receptor type 18 (brain-derived)" 24820 rs3739168 PNKP 11284 19 55062216 NM_007254 NP_009185 C/T P20S minus 4925169 693 EGP_SNPS PDR90 NIHPDR 180 0.02 107 by freq 19q13.3-q13.4 polynucleotide kinase 3'-phosphatase 24821 rs3739185 PNKP 11284 19 55059433 NM_007254 NP_009185 A/C R180S minus 4925187 693 EGP_SNPS PDR90 NIHPDR 178 0.01 107 by freq 19q13.3-q13.4 polynucleotide kinase 3'-phosphatase 24822 rs3739186 PNKP 11284 19 55059298 NM_007254 NP_009185 A/T Y196N minus 4925188 693 EGP_SNPS PDR90 NIHPDR 176 0.02 107 by freq 19q13.3-q13.4 polynucleotide kinase 3'-phosphatase 24823 rs3739335 RRS1 23212 8 67504297 NM_015169 NP_055984 A/G K126R plus 4925338 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.05 107 HapMap 8q12.3 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 24824 rs3739335 RRS1 23212 8 67504297 NM_015169 NP_055984 A/G K126R plus 4925338 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q12.3 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 24825 rs3739336 RRS1 23212 8 67504492 NM_015169 NP_055984 G/T R191L plus 4925339 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.18 107 by freq 8q12.3 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 24826 rs3739407 MTUS1 57509 8 17657155 XM_372031 XP_372031 C/T C148R minus 4925410 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.39 123 "by doubleHit,freq,cluster" 8p22 mitochondrial tumor suppressor 1 24827 rs3739407 MTUS1 57509 8 17657155 XM_372031 XP_372031 C/T C148R minus 23735805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 8p22 mitochondrial tumor suppressor 1 24828 rs3739407 MTUS1 57509 8 17657155 XM_372031 XP_372031 C/T C148R minus 23735805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 8p22 mitochondrial tumor suppressor 1 24829 rs3739407 MTUS1 57509 8 17657155 XM_372031 XP_372031 C/T C148R minus 23735805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 8p22 mitochondrial tumor suppressor 1 24830 rs3739510 LAMC3 10319 9 130966125 NM_006059 NP_006050 C/G R770G minus 4925513 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.42 123 "HapMap,freq,cluster" 9q31-q34 "laminin, gamma 3" 24831 rs3739510 LAMC3 10319 9 130966125 NM_006059 NP_006050 C/G R770G minus 6245797 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,freq,cluster" 9q31-q34 "laminin, gamma 3" 24832 rs3739510 LAMC3 10319 9 130966125 NM_006059 NP_006050 C/G R770G minus 23895341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 9q31-q34 "laminin, gamma 3" 24833 rs3739510 LAMC3 10319 9 130966125 NM_006059 NP_006050 C/G R770G minus 23895341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 9q31-q34 "laminin, gamma 3" 24834 rs3739510 LAMC3 10319 9 130966125 NM_006059 NP_006050 C/G R770G minus 23895341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "HapMap,freq,cluster" 9q31-q34 "laminin, gamma 3" 24835 rs3739602 BA526D8.4 83744 9 92689119 XM_046861 XP_046861 A/G G502D minus 4925605 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 107 HapMap 9q22.32 KRAB box containing C2H2 type zinc finger bA526D8.4 24836 rs3739602 BA526D8.4 83744 9 92689119 XM_046861 XP_046861 A/G G502D minus 4925605 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q22.32 KRAB box containing C2H2 type zinc finger bA526D8.4 24837 rs3739714 BNC2 54796 9 16425848 NM_017637 NP_060107 A/G T704A minus 4925717 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.1 123 "HapMap,freq,cluster" 9p22.2 basonuclin 2 24838 rs3739714 BNC2 54796 9 16425848 NM_017637 NP_060107 A/G T704A minus 4925717 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 9p22.2 basonuclin 2 24839 rs3739714 BNC2 54796 9 16425848 NM_017637 NP_060107 A/G T704A minus 24045582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9p22.2 basonuclin 2 24840 rs3739714 BNC2 54796 9 16425848 NM_017637 NP_060107 A/G T704A minus 24045582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 9p22.2 basonuclin 2 24841 rs3739714 BNC2 54796 9 16425848 NM_017637 NP_060107 A/G T704A minus 24045582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 9p22.2 basonuclin 2 24842 rs3739716 BNC2 54796 9 16409522 NM_017637 NP_060107 A/G G844D minus 4925719 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 9p22.2 basonuclin 2 24843 rs3739721 ALDOB 229 9 101268397 NM_000035 NP_000026 C/G E207Q plus 4925724 738 YUSUKE JBIC-ALLELE Japanese (752) 900 0.06 107 HapMap 9q21.3-q22.2 "aldolase B, fructose-bisphosphate" 24844 rs3739721 ALDOB 229 9 101268397 NM_000035 NP_000026 C/G E207Q plus 4925724 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q21.3-q22.2 "aldolase B, fructose-bisphosphate" 24845 rs3739722 GRIN3A 116443 9 101415237 NM_133445 NP_597702 A/G R1041Q minus 4925725 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.23 123 "by cluster,freq" 9q31.1 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A" 24846 rs3739722 GRIN3A 116443 9 101415237 NM_133445 NP_597702 A/G R1041Q minus 24052112 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 9q31.1 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A" 24847 rs3739722 GRIN3A 116443 9 101415237 NM_133445 NP_597702 A/G R1041Q minus 24052112 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 9q31.1 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A" 24848 rs3739722 GRIN3A 116443 9 101415237 NM_133445 NP_597702 A/G R1041Q minus 24052112 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 9q31.1 "glutamate receptor, ionotropic, N-methyl-D-aspartate 3A" 24849 rs3739914 TTF1 7270 9 132306855 NM_007344 NP_031370 C/T V303A minus 4925917 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.2 107 HapMap 9q34.3 "transcription termination factor, RNA polymerase I" 24850 rs3739914 TTF1 7270 9 132306855 NM_007344 NP_031370 C/T V303A minus 4925917 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q34.3 "transcription termination factor, RNA polymerase I" 24851 rs3739915 TTF1 7270 9 132306684 NM_007344 NP_031370 G/T G360V minus 4925918 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.2 120 "HapMap,doubleHit,freq,cluster" 9q34.3 "transcription termination factor, RNA polymerase I" 24852 rs3739915 TTF1 7270 9 132306684 NM_007344 NP_031370 G/T G360V minus 10513831 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,doubleHit,freq,cluster" 9q34.3 "transcription termination factor, RNA polymerase I" 24853 rs3739916 TTF1 7270 9 132306561 NM_007344 NP_031370 A/G R401Q minus 4925919 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 107 "HapMap,freq" 9q34.3 "transcription termination factor, RNA polymerase I" 24854 rs3739916 TTF1 7270 9 132306561 NM_007344 NP_031370 A/G R401Q minus 4925919 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 107 "HapMap,freq" 9q34.3 "transcription termination factor, RNA polymerase I" 24855 rs3739965 ANUBL1 93550 10 45442352 NM_174890 NP_777550 A/C I309L minus 4925968 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 10q11.22 "AN1, ubiquitin-like, homolog (Xenopus laevis)" 24856 rs3740015 DHTKD1 55526 10 12171087 NM_018706 NP_061176 G/T Y272D plus 4926018 738 YUSUKE JBIC-ALLELE Japanese (752) 1112 0.47 123 "by doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 24857 rs3740015 DHTKD1 55526 10 12171087 NM_018706 NP_061176 G/T Y272D plus 24302960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 23 0.5 123 "by doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 24858 rs3740015 DHTKD1 55526 10 12171087 NM_018706 NP_061176 G/T Y272D plus 24302960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.33 123 "by doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 24859 rs3740015 DHTKD1 55526 10 12171087 NM_018706 NP_061176 G/T Y272D plus 24302960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 10p14 dehydrogenase E1 and transketolase domain containing 1 24860 rs3740128 CHST3 9469 10 73437839 NM_004273 NP_004264 C/G I348M plus 4926131 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 10q22.2 carbohydrate (chondroitin 6) sulfotransferase 3 24861 rs3740168 CUBN 8029 10 16988396 NM_001081 NP_001072 C/G P2575R minus 4926171 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.13 120 "by cluster,freq" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 24862 rs3740199 ADAM12 8038 10 128009015 NM_003474 NP_003465 C/G G48R plus 24120978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24863 rs3740199 ADAM12 8038 10 128009015 NM_003474 NP_003465 C/G G48R plus 24120978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24864 rs3740199 ADAM12 8038 10 128009015 NM_003474 NP_003465 C/G G48R plus 24120978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24865 rs3740199 ADAM12 8038 10 128009015 NM_021641 NP_067673 C/G G48R plus 24120978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24866 rs3740199 ADAM12 8038 10 128009015 NM_021641 NP_067673 C/G G48R plus 24120978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24867 rs3740199 ADAM12 8038 10 128009015 NM_021641 NP_067673 C/G G48R plus 24120978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 10q26.3 a disintegrin and metalloproteinase domain 12 (meltrin alpha) 24868 rs3740203 USP6NL 9712 10 11544990 XM_374768 XP_374768 A/G T665I plus 4926206 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 107 by freq 10p13 USP6 N-terminal like 24869 rs3740212 SFMBT2 57713 10 7254590 XM_166140 XP_166140 C/G P675R plus 4926215 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0 107 by freq 10p15.1 Scm-like with four mbt domains 2 24870 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.21 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24871 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 901 AFFY AfAm 12 1 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24872 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 902 AFFY Caucasian 24 0.13 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24873 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 903 AFFY Asian 10 0.3 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24874 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 904 AFFY CEPH 8 0.13 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24875 rs3740217 ITIH2 3698 10 7820652 NM_002216 NP_002207 C/G P674A minus 4926220 905 AFFY PDpanel 48 0.02 107 by freq 10p15 inter-alpha (globulin) inhibitor H2 24876 rs3740231 MYO3A 53904 10 26503049 NM_017433 NP_059129 A/T T1284S minus 24688625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 10p11.1 myosin IIIA 24877 rs3740231 MYO3A 53904 10 26503049 NM_017433 NP_059129 A/T T1284S minus 24688625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10p11.1 myosin IIIA 24878 rs3740231 MYO3A 53904 10 26503049 NM_017433 NP_059129 A/T T1284S minus 24688625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 10p11.1 myosin IIIA 24879 rs3740296 RBP3 5949 10 48001948 NM_002900 NP_002891 C/T R1236K plus 4926299 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 10q11.2 "retinol binding protein 3, interstitial" 24880 rs3740321 MYST4 23522 10 76459083 NM_012330 NP_036462 C/T V1499I minus 4926324 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.05 107 by freq 10q22.2 MYST histone acetyltransferase (monocytic leukemia) 4 24881 rs3740343 LDB3 11155 10 88429173 NM_007078 NP_009009 A/G V55I plus 4926346 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.04 107 by freq 10q22.3-q23.2 LIM domain binding 3 24882 rs3740421 MGEA5 10724 10 103567633 NM_012215 NP_036347 A/G G46E minus 4926424 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 107 by freq 10q24.1-q24.3 meningioma expressed antigen 5 (hyaluronidase) 24883 rs3740447 PALD 27143 10 71977107 XM_166125 XP_166125 A/G R721C minus 4926450 738 YUSUKE JBIC-ALLELE Japanese (752) 1122 0.44 121 "by cluster,freq" 10q22.2 paladin 24884 rs3740469 SLK 9748 10 105753016 NM_014720 NP_055535 A/G T697I minus 4926472 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.12 123 "by cluster,freq" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 24885 rs3740469 SLK 9748 10 105753016 NM_014720 NP_055535 A/G T697I minus 23510995 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 24886 rs3740469 SLK 9748 10 105753016 NM_014720 NP_055535 A/G T697I minus 23510995 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 24887 rs3740469 SLK 9748 10 105753016 NM_014720 NP_055535 A/G T697I minus 23510995 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 10q25.1 SNF1 sucrose nonfermenting like kinase (yeast) 24888 rs3740526 MMS19L 64210 10 99210697 NM_022362 NP_071757 A/G G790D minus 4926529 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.4 123 "by doubleHit,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 24889 rs3740526 MMS19L 64210 10 99210697 NM_022362 NP_071757 A/G G790D minus 24090459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by doubleHit,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 24890 rs3740526 MMS19L 64210 10 99210697 NM_022362 NP_071757 A/G G790D minus 24090459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 24891 rs3740526 MMS19L 64210 10 99210697 NM_022362 NP_071757 A/G G790D minus 24090459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 24892 rs3740691 ZNF289 84364 11 47144987 NM_032389 NP_115765 A/G S411N minus 4926694 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.11 120 "by cluster,freq" 11p11.2-p11.12 "zinc finger protein 289, ID1 regulated" 24893 rs3740691 ZNF289 84364 11 47144987 NM_032389 NP_115765 A/G S411N minus 6554603 1303 SEQUENOM CEPH CEPH (92) 92 0.34 120 "by cluster,freq" 11p11.2-p11.12 "zinc finger protein 289, ID1 regulated" 24894 rs3740753 PGR 5241 11 100503981 NM_000926 NP_000917 C/G S344T plus 4926756 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0 120 "by cluster,freq" 11q22-q23 progesterone receptor 24895 rs3740753 PGR 5241 11 100503981 NM_000926 NP_000917 C/G S344T plus 16343360 693 EGP_SNPS PDR90 NIHPDR 174 0.09 120 "by cluster,freq" 11q22-q23 progesterone receptor 24896 rs3740853 JMJD2D 55693 11 94371407 NM_018039 NP_060509 A/G R408Q plus 4926857 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.43 123 "HapMap,freq,cluster" 11q21 jumonji domain containing 2D 24897 rs3740853 JMJD2D 55693 11 94371407 NM_018039 NP_060509 A/G R408Q plus 4926857 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 123 "HapMap,freq,cluster" 11q21 jumonji domain containing 2D 24898 rs3740853 JMJD2D 55693 11 94371407 NM_018039 NP_060509 A/G R408Q plus 24579304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,freq,cluster" 11q21 jumonji domain containing 2D 24899 rs3740853 JMJD2D 55693 11 94371407 NM_018039 NP_060509 A/G R408Q plus 24579304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 11q21 jumonji domain containing 2D 24900 rs3740853 JMJD2D 55693 11 94371407 NM_018039 NP_060509 A/G R408Q plus 24579304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 11q21 jumonji domain containing 2D 24901 rs3740868 GPR83 10888 11 93753114 NM_016540 NP_057624 G/T P374Q plus 4926872 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.11 123 "by cluster,freq" 11q21 G protein-coupled receptor 83 24902 rs3740868 GPR83 10888 11 93753114 NM_016540 NP_057624 G/T P374Q plus 24109938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q21 G protein-coupled receptor 83 24903 rs3740868 GPR83 10888 11 93753114 NM_016540 NP_057624 G/T P374Q plus 24109938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11q21 G protein-coupled receptor 83 24904 rs3740868 GPR83 10888 11 93753114 NM_016540 NP_057624 G/T P374Q plus 24109938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 11q21 G protein-coupled receptor 83 24905 rs3740881 APLP2 334 11 129515523 NM_001642 NP_001633 A/G D632N plus 4926885 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.05 107 HapMap 11q24 amyloid beta (A4) precursor-like protein 2 24906 rs3740881 APLP2 334 11 129515523 NM_001642 NP_001633 A/G D632N plus 4926885 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 11q24 amyloid beta (A4) precursor-like protein 2 24907 rs3740909 CDON 50937 11 125394736 NM_016952 NP_058648 C/T E162K plus 4926913 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.11 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24908 rs3740909 CDON 50937 11 125394736 NM_016952 NP_058648 C/T E162K plus 10699381 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24909 rs3740909 CDON 50937 11 125394736 NM_016952 NP_058648 C/T E162K plus 23329308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24910 rs3740909 CDON 50937 11 125394736 NM_016952 NP_058648 C/T E162K plus 23329308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24911 rs3740909 CDON 50937 11 125394736 NM_016952 NP_058648 C/T E162K plus 23329308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24912 rs3740912 CDON 50937 11 125396479 NM_016952 NP_058648 C/T V75I plus 24364299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24913 rs3740912 CDON 50937 11 125396479 NM_016952 NP_058648 C/T V75I plus 24364299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24914 rs3740912 CDON 50937 11 125396479 NM_016952 NP_058648 C/T V75I plus 24364299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q23-q24 cell adhesion molecule-related/down-regulated by oncogenes 24915 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 4926959 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.23 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24916 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 5606000 693 EGP_SNPS PDR90 NIHPDR 164 0.38 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24917 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 5606000 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24918 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 24569612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24919 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 24569612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24920 rs3740955 RAG1 5896 11 36552176 NM_000448 NP_000439 A/G H249R plus 24569612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 11p13 recombination activating gene 1 24921 rs3740996 TRIM5 85363 11 5657857 NM_033034 NP_149023 A/G H43Y plus 4927000 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24922 rs3740996 TRIM5 85363 11 5657857 NM_033034 NP_149023 A/G H43Y plus 24076139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24923 rs3740996 TRIM5 85363 11 5657857 NM_033034 NP_149023 A/G H43Y plus 24076139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24924 rs3740996 TRIM5 85363 11 5657857 NM_033034 NP_149023 A/G H43Y plus 24076139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24925 rs3740996 TRIM5 85363 11 5657857 NM_033092 NP_149083 A/G H43Y plus 4927000 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24926 rs3740996 TRIM5 85363 11 5657857 NM_033092 NP_149083 A/G H43Y plus 24076139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24927 rs3740996 TRIM5 85363 11 5657857 NM_033092 NP_149083 A/G H43Y plus 24076139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24928 rs3740996 TRIM5 85363 11 5657857 NM_033092 NP_149083 A/G H43Y plus 24076139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24929 rs3740996 TRIM5 85363 11 5657857 NM_033093 NP_149084 A/G H43Y plus 4927000 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24930 rs3740996 TRIM5 85363 11 5657857 NM_033093 NP_149084 A/G H43Y plus 24076139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24931 rs3740996 TRIM5 85363 11 5657857 NM_033093 NP_149084 A/G H43Y plus 24076139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24932 rs3740996 TRIM5 85363 11 5657857 NM_033093 NP_149084 A/G H43Y plus 24076139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by cluster,freq" 11p15 tripartite motif-containing 5 24933 rs3740997 TRIM34 53840 11 5620282 NM_021616 NP_067629 C/G D282H plus 4927001 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 120 "HapMap,freq,cluster" 11p15 tripartite motif-containing 34 24934 rs3740997 TRIM34 53840 11 5620282 NM_021616 NP_067629 C/G D282H plus 4927001 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 120 "HapMap,freq,cluster" 11p15 tripartite motif-containing 34 24935 rs3740997 TRIM34 53840 11 5620282 NM_130389 NP_569073 C/G D37H plus 4927001 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 120 "HapMap,freq,cluster" 11p15 tripartite motif-containing 34 24936 rs3740997 TRIM34 53840 11 5620282 NM_130389 NP_569073 C/G D37H plus 4927001 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 120 "HapMap,freq,cluster" 11p15 tripartite motif-containing 34 24937 rs3741040 AMPD3 272 11 10478368 NM_000480 NP_000471 A/G R582C minus 4927044 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 by freq 11p15 adenosine monophosphate deaminase (isoform E) 24938 rs3741056 ACAT1 38 11 107497556 NM_000019 NP_000010 C/G A5P plus 4927060 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.34 123 "by doubleHit,freq,cluster" 11q22.3-q23.1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 24939 rs3741056 ACAT1 38 11 107497556 NM_000019 NP_000010 C/G A5P plus 24610906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 "by doubleHit,freq,cluster" 11q22.3-q23.1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 24940 rs3741056 ACAT1 38 11 107497556 NM_000019 NP_000010 C/G A5P plus 24610906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 11q22.3-q23.1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 24941 rs3741056 ACAT1 38 11 107497556 NM_000019 NP_000010 C/G A5P plus 24610906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by doubleHit,freq,cluster" 11q22.3-q23.1 acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 24942 rs3741150 ARHGEF17 9828 11 72698680 NM_014786 NP_055601 C/T G450E minus 4927154 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 HapMap 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 24943 rs3741150 ARHGEF17 9828 11 72698680 NM_014786 NP_055601 C/T G450E minus 4927154 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 11q13.3 Rho guanine nucleotide exchange factor (GEF) 17 24944 rs3741178 ALDH3B2 222 11 67190624 NM_000695 NP_000686 C/T A50T plus 4927182 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.02 107 by freq 11q13 "aldehyde dehydrogenase 3 family, member B2" 24945 rs3741194 LRFN4 78999 11 66382810 NM_024036 NP_076941 A/G V340A minus 4927198 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.15 116 "by doubleHit,freq,cluster" 11q13.1 leucine rich repeat and fibronectin type III domain containing 4 24946 rs3741280 DSCAML1 57453 11 116908445 NM_020693 NP_065744 G/T H232N plus 4927284 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.44 120 "HapMap,doubleHit,freq,cluster" 11q23 Down syndrome cell adhesion molecule like 1 24947 rs3741280 DSCAML1 57453 11 116908445 NM_020693 NP_065744 G/T H232N plus 4927284 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.29 120 "HapMap,doubleHit,freq,cluster" 11q23 Down syndrome cell adhesion molecule like 1 24948 rs3741367 CD164L1 57124 11 65839705 NM_020404 NP_065137 C/T H457R plus 4927371 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.22 120 "HapMap,freq,cluster" 11q13 CD164 sialomucin-like 1 24949 rs3741367 CD164L1 57124 11 65839705 NM_020404 NP_065137 C/T H457R plus 4927371 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.41 120 "HapMap,freq,cluster" 11q13 CD164 sialomucin-like 1 24950 rs3741367 CD164L1 57124 11 65839705 NM_020404 NP_065137 C/T H457R plus 4927371 1303 SEQUENOM CEPH CEPH (92) 92 0.48 120 "HapMap,freq,cluster" 11q13 CD164 sialomucin-like 1 24951 rs3741378 SIPA1 6494 11 65165513 NM_006747 NP_006738 A/G S182F minus 4927382 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.4 116 "by cluster,freq" 11q13 signal-induced proliferation-associated gene 1 24952 rs3741378 SIPA1 6494 11 65165513 NM_153253 NP_694985 A/G S182F minus 4927382 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.4 116 "by cluster,freq" 11q13 signal-induced proliferation-associated gene 1 24953 rs3741379 SIPA1 6494 11 65165284 NM_006747 NP_006738 A/C A106S minus 4927383 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by cluster,freq" 11q13 signal-induced proliferation-associated gene 1 24954 rs3741379 SIPA1 6494 11 65165284 NM_153253 NP_694985 A/C A106S minus 4927383 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by cluster,freq" 11q13 signal-induced proliferation-associated gene 1 24955 rs3741380 DKFZp762C186 254102 11 65105639 XM_170658 XP_170658 A/G R307Q plus 4927384 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.43 107 "HapMap,freq" 11q13.1 tangerin 24956 rs3741380 DKFZp762C186 254102 11 65105639 XM_170658 XP_170658 A/G R307Q plus 4927384 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 107 "HapMap,freq" 11q13.1 tangerin 24957 rs3741395 HSMDPKIN 55561 11 64354082 XM_290516 XP_290516 A/G Q1091R minus 24507709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 11q13.1 myotonic dystrophy protein kinase like protein 24958 rs3741395 HSMDPKIN 55561 11 64354082 XM_290516 XP_290516 A/G Q1091R minus 24507709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 11q13.1 myotonic dystrophy protein kinase like protein 24959 rs3741395 HSMDPKIN 55561 11 64354082 XM_290516 XP_290516 A/G Q1091R minus 24507709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 11q13.1 myotonic dystrophy protein kinase like protein 24960 rs3741447 RSN 6249 12 121350293 NM_002956 NP_002947 A/G R769W plus 4927451 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 107 HapMap 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 24961 rs3741447 RSN 6249 12 121350293 NM_002956 NP_002947 A/G R769W plus 4927451 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 24962 rs3741447 RSN 6249 12 121350293 NM_198240 NP_937883 A/G R734W plus 4927451 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 107 HapMap 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 24963 rs3741447 RSN 6249 12 121350293 NM_198240 NP_937883 A/G R734W plus 4927451 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12q24.3 restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) 24964 rs3741457 KITLG 4254 12 87428718 NM_000899 NP_000890 C/T T54A plus 4927461 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12q22 KIT ligand 24965 rs3741457 KITLG 4254 12 87428718 NM_003994 NP_003985 C/T T54A plus 4927461 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12q22 KIT ligand 24966 rs3741466 FBXW8 26259 12 115927984 NM_012174 NP_036306 C/T T470M plus 4927470 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 107 HapMap 12q24.23 F-box and WD-40 domain protein 8 24967 rs3741466 FBXW8 26259 12 115927984 NM_012174 NP_036306 C/T T470M plus 4927470 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 107 HapMap 12q24.23 F-box and WD-40 domain protein 8 24968 rs3741466 FBXW8 26259 12 115927984 NM_153348 NP_699179 C/T T536M plus 4927470 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.07 107 HapMap 12q24.23 F-box and WD-40 domain protein 8 24969 rs3741466 FBXW8 26259 12 115927984 NM_153348 NP_699179 C/T T536M plus 4927470 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 107 HapMap 12q24.23 F-box and WD-40 domain protein 8 24970 rs3741486 GOLGA3 2802 12 131995214 NM_005895 NP_005886 A/G P264L plus 4927490 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.19 107 "HapMap,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 24971 rs3741486 GOLGA3 2802 12 131995214 NM_005895 NP_005886 A/G P264L plus 4927490 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 107 "HapMap,freq" 12q24.33 "golgi autoantigen, golgin subfamily a, 3" 24972 rs3741626 MLL2 8085 12 47720676 NM_003482 NP_003473 A/G P2107S plus 4927630 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 107 HapMap 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 24973 rs3741665 SP1 6667 12 52091142 NM_138473 NP_612482 A/G T737A plus 4927670 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 by freq 12q13.1 Sp1 transcription factor 24974 rs3741795 LOH12CR1 118426 12 12405470 NM_058169 NP_477517 C/G S41C minus 4927801 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.03 107 HapMap 12p12 "loss of heterozygosity, 12, chromosomal region 1" 24975 rs3741795 LOH12CR1 118426 12 12405470 NM_058169 NP_477517 C/G S41C minus 4927801 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 107 HapMap 12p12 "loss of heterozygosity, 12, chromosomal region 1" 24976 rs3741798 MANSC1 54682 12 12387353 NM_018050 NP_060520 A/G V55I minus 4927804 738 YUSUKE JBIC-ALLELE Japanese (752) 736 0.11 107 by freq 12p13.2 MANSC domain containing 1 24977 rs3741803 MANSC1 54682 12 12374401 NM_018050 NP_060520 A/T N375Y minus 4927809 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 123 "by cluster,freq" 12p13.2 MANSC domain containing 1 24978 rs3741803 MANSC1 54682 12 12374401 NM_018050 NP_060520 A/T N375Y minus 23915378 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13.2 MANSC domain containing 1 24979 rs3741803 MANSC1 54682 12 12374401 NM_018050 NP_060520 A/T N375Y minus 23915378 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 12p13.2 MANSC domain containing 1 24980 rs3741803 MANSC1 54682 12 12374401 NM_018050 NP_060520 A/T N375Y minus 23915378 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 12p13.2 MANSC domain containing 1 24981 rs3741822 GPRC5D 55507 12 12994533 NM_018654 NP_061124 A/C A18D minus 4927828 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.12 123 "HapMap,freq" 12p13.3 "G protein-coupled receptor, family C, group 5, member D" 24982 rs3741822 GPRC5D 55507 12 12994533 NM_018654 NP_061124 A/C A18D minus 4927828 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.07 123 "HapMap,freq" 12p13.3 "G protein-coupled receptor, family C, group 5, member D" 24983 rs3741822 GPRC5D 55507 12 12994533 NM_018654 NP_061124 A/C A18D minus 24211884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq" 12p13.3 "G protein-coupled receptor, family C, group 5, member D" 24984 rs3741822 GPRC5D 55507 12 12994533 NM_018654 NP_061124 A/C A18D minus 24211884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 12p13.3 "G protein-coupled receptor, family C, group 5, member D" 24985 rs3741822 GPRC5D 55507 12 12994533 NM_018654 NP_061124 A/C A18D minus 24211884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq" 12p13.3 "G protein-coupled receptor, family C, group 5, member D" 24986 rs3741883 ARK5 9891 12 104963405 XM_374996 XP_374996 C/G P543R plus 4927889 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.4 120 "by doubleHit,freq,cluster" 12q24.11 AMP-activated protein kinase family member 5 24987 rs3741903 TMEM16B 57101 12 5900666 NM_020373 NP_065106 A/G V108A plus 4927909 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 123 by freq 12p13.3 transmembrane protein 16B 24988 rs3741903 TMEM16B 57101 12 5900666 NM_020373 NP_065106 A/G V108A plus 24696979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 by freq 12p13.3 transmembrane protein 16B 24989 rs3741903 TMEM16B 57101 12 5900666 NM_020373 NP_065106 A/G V108A plus 24696979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 12p13.3 transmembrane protein 16B 24990 rs3741903 TMEM16B 57101 12 5900666 NM_020373 NP_065106 A/G V108A plus 24696979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 12p13.3 transmembrane protein 16B 24991 rs3741913 SCNN1A 6337 12 6327457 NM_001038 NP_001029 A/C C618F plus 4927919 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.03 121 "by cluster,freq" 12p13 "sodium channel, nonvoltage-gated 1 alpha" 24992 rs3741923 ACRBP 84519 12 6623037 NM_032489 NP_115878 C/T T336A plus 4927929 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 107 HapMap 12p13.31 acrosin binding protein 24993 rs3741923 ACRBP 84519 12 6623037 NM_032489 NP_115878 C/T T336A plus 4927929 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12p13.31 acrosin binding protein 24994 rs3741927 DYRK4 8798 12 4578460 NM_003845 NP_003836 A/G N189S plus 4927933 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "HapMap,freq,cluster" 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 24995 rs3741927 DYRK4 8798 12 4578460 NM_003845 NP_003836 A/G N189S plus 4927933 885 TSC-CSHL HapMap-CEPH-30-trios 104 1 123 "HapMap,freq,cluster" 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 24996 rs3741927 DYRK4 8798 12 4578460 NM_003845 NP_003836 A/G N189S plus 23779469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 24997 rs3741927 DYRK4 8798 12 4578460 NM_003845 NP_003836 A/G N189S plus 23779469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,freq,cluster" 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 24998 rs3741927 DYRK4 8798 12 4578460 NM_003845 NP_003836 A/G N189S plus 23779469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 12p13.32 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 24999 rs3741981 OAS1 4938 12 111811590 NM_002534 NP_002525 C/T G162S minus 4927987 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.37 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25000 rs3741981 OAS1 4938 12 111811590 NM_002534 NP_002525 C/T G162S minus 4927987 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25001 rs3741981 OAS1 4938 12 111811590 NM_002534 NP_002525 C/T G162S minus 24415187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25002 rs3741981 OAS1 4938 12 111811590 NM_002534 NP_002525 C/T G162S minus 24415187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25003 rs3741981 OAS1 4938 12 111811590 NM_002534 NP_002525 C/T G162S minus 24415187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25004 rs3741981 OAS1 4938 12 111811590 NM_016816 NP_058132 C/T G162S minus 4927987 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.37 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25005 rs3741981 OAS1 4938 12 111811590 NM_016816 NP_058132 C/T G162S minus 4927987 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25006 rs3741981 OAS1 4938 12 111811590 NM_016816 NP_058132 C/T G162S minus 24415187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25007 rs3741981 OAS1 4938 12 111811590 NM_016816 NP_058132 C/T G162S minus 24415187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25008 rs3741981 OAS1 4938 12 111811590 NM_016816 NP_058132 C/T G162S minus 24415187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 12q24.1 "2',5'-oligoadenylate synthetase 1, 40/46kDa" 25009 rs3742030 TRPV4 59341 12 108715267 NM_021625 NP_067638 C/T P19S minus 4928036 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.07 107 by freq 12q24.1 "transient receptor potential cation channel, subfamily V, member 4" 25010 rs3742030 TRPV4 59341 12 108715267 NM_147204 NP_671737 C/T P19S minus 4928036 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.07 107 by freq 12q24.1 "transient receptor potential cation channel, subfamily V, member 4" 25011 rs3742076 FOXM1 2305 12 2838430 NM_021953 NP_068772 C/T S643P minus 4928082 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by cluster,freq" 12p13 forkhead box M1 25012 rs3742076 FOXM1 2305 12 2838430 NM_021953 NP_068772 C/T S643P minus 23776465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 12p13 forkhead box M1 25013 rs3742076 FOXM1 2305 12 2838430 NM_021953 NP_068772 C/T S643P minus 23776465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 19 0.5 123 "by cluster,freq" 12p13 forkhead box M1 25014 rs3742076 FOXM1 2305 12 2838430 NM_021953 NP_068772 C/T S643P minus 23776465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by cluster,freq" 12p13 forkhead box M1 25015 rs3742076 FOXM1 2305 12 2838430 NM_202002 NP_973731 C/T S681P minus 4928082 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by cluster,freq" 12p13 forkhead box M1 25016 rs3742076 FOXM1 2305 12 2838430 NM_202002 NP_973731 C/T S681P minus 23776465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 12p13 forkhead box M1 25017 rs3742076 FOXM1 2305 12 2838430 NM_202002 NP_973731 C/T S681P minus 23776465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 19 0.5 123 "by cluster,freq" 12p13 forkhead box M1 25018 rs3742076 FOXM1 2305 12 2838430 NM_202002 NP_973731 C/T S681P minus 23776465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by cluster,freq" 12p13 forkhead box M1 25019 rs3742076 FOXM1 2305 12 2838430 NM_202003 NP_973732 C/T S628P minus 4928082 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by cluster,freq" 12p13 forkhead box M1 25020 rs3742076 FOXM1 2305 12 2838430 NM_202003 NP_973732 C/T S628P minus 23776465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 12p13 forkhead box M1 25021 rs3742076 FOXM1 2305 12 2838430 NM_202003 NP_973732 C/T S628P minus 23776465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 19 0.5 123 "by cluster,freq" 12p13 forkhead box M1 25022 rs3742076 FOXM1 2305 12 2838430 NM_202003 NP_973732 C/T S628P minus 23776465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by cluster,freq" 12p13 forkhead box M1 25023 rs3742089 C1RL 51279 12 7140740 NM_016546 NP_057630 A/G V285I minus 4928095 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.28 123 "HapMap,freq,cluster" 12p13.31 "complement component 1, r subcomponent-like" 25024 rs3742089 C1RL 51279 12 7140740 NM_016546 NP_057630 A/G V285I minus 4928095 885 TSC-CSHL HapMap-CEPH-30-trios 104 0.33 123 "HapMap,freq,cluster" 12p13.31 "complement component 1, r subcomponent-like" 25025 rs3742089 C1RL 51279 12 7140740 NM_016546 NP_057630 A/G V285I minus 24207858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "HapMap,freq,cluster" 12p13.31 "complement component 1, r subcomponent-like" 25026 rs3742089 C1RL 51279 12 7140740 NM_016546 NP_057630 A/G V285I minus 24207858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,freq,cluster" 12p13.31 "complement component 1, r subcomponent-like" 25027 rs3742089 C1RL 51279 12 7140740 NM_016546 NP_057630 A/G V285I minus 24207858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,freq,cluster" 12p13.31 "complement component 1, r subcomponent-like" 25028 rs3742185 ANKRD10 55608 13 110330289 NM_017664 NP_060134 C/T P320L minus 4928191 738 YUSUKE JBIC-ALLELE Japanese (752) 1448 0.17 123 "by cluster,freq" 13q34 ankyrin repeat domain 10 25029 rs3742185 ANKRD10 55608 13 110330289 NM_017664 NP_060134 C/T P320L minus 24097839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 13q34 ankyrin repeat domain 10 25030 rs3742185 ANKRD10 55608 13 110330289 NM_017664 NP_060134 C/T P320L minus 24097839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 13q34 ankyrin repeat domain 10 25031 rs3742185 ANKRD10 55608 13 110330289 NM_017664 NP_060134 C/T P320L minus 24097839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q34 ankyrin repeat domain 10 25032 rs3742207 COL4A1 1282 13 109616599 NM_001845 NP_001836 A/C Q1334H minus 4928213 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.27 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 1" 25033 rs3742207 COL4A1 1282 13 109616599 NM_001845 NP_001836 A/C Q1334H minus 24465158 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 1" 25034 rs3742207 COL4A1 1282 13 109616599 NM_001845 NP_001836 A/C Q1334H minus 24465158 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 1" 25035 rs3742207 COL4A1 1282 13 109616599 NM_001845 NP_001836 A/C Q1334H minus 24465158 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 1" 25036 rs3742212 LIG4 3981 13 107660001 NM_002312 NP_002303 A/T L539F minus 4928218 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0 107 by freq 13q33-q34 "ligase IV, DNA, ATP-dependent" 25037 rs3742212 LIG4 3981 13 107660001 NM_206937 NP_996820 A/T L539F minus 4928218 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0 107 by freq 13q33-q34 "ligase IV, DNA, ATP-dependent" 25038 rs3742289 UTP14C 9724 13 51501195 XM_375024 XP_375024 G/T G85V plus 4928295 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.45 120 "by doubleHit,freq,cluster" 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25039 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.04 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25040 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 901 AFFY AfAm 12 1 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25041 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 902 AFFY Caucasian 24 0.13 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25042 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 903 AFFY Asian 12 1 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25043 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 904 AFFY CEPH 12 1 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25044 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 4928296 905 AFFY PDpanel 48 1 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25045 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 24448445 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25046 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 24448445 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25047 rs3742290 UTP14C 9724 13 51501242 XM_375024 XP_375024 A/G T101A plus 24448445 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 25048 rs3742301 PCDH8 5100 13 52320554 NM_002590 NP_002581 A/G W7R plus 4928307 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 113 "by cluster,freq" 13q14.3-q21.1 protocadherin 8 25049 rs3742301 PCDH8 5100 13 52320554 NM_032949 NP_116567 A/G W7R plus 4928307 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.47 113 "by cluster,freq" 13q14.3-q21.1 protocadherin 8 25050 rs3742321 STARD13 90627 13 32602065 NM_052851 NP_443083 C/T K132R plus 4928327 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.23 121 "by cluster,freq" 13q12-q13 START domain containing 13 25051 rs3742321 STARD13 90627 13 32602065 NM_178006 NP_821074 C/T K250R plus 4928327 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.23 121 "by cluster,freq" 13q12-q13 START domain containing 13 25052 rs3742321 STARD13 90627 13 32602065 NM_178007 NP_821075 C/T K242R plus 4928327 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.23 121 "by cluster,freq" 13q12-q13 START domain containing 13 25053 rs3742424 PPP2R5C 5527 14 101461330 NM_002719 NP_002710 C/G A515P plus 4928430 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.33 120 "by cluster,freq" 14q32 "protein phosphatase 2, regulatory subunit B (B56), gamma isoform" 25054 rs3742424 PPP2R5C 5527 14 101461330 NM_178586 NP_848701 C/G A476P plus 4928430 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.33 120 "by cluster,freq" 14q32 "protein phosphatase 2, regulatory subunit B (B56), gamma isoform" 25055 rs3742489 ZNF409 22830 14 23072727 XM_375065 XP_375065 G/T P550T plus 4928495 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 123 "HapMap,freq" 14q11.2 zinc finger protein 409 25056 rs3742489 ZNF409 22830 14 23072727 XM_375065 XP_375065 G/T P550T plus 4928495 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq" 14q11.2 zinc finger protein 409 25057 rs3742489 ZNF409 22830 14 23072727 XM_375065 XP_375065 G/T P550T plus 24579515 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq" 14q11.2 zinc finger protein 409 25058 rs3742489 ZNF409 22830 14 23072727 XM_375065 XP_375065 G/T P550T plus 24579515 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 14q11.2 zinc finger protein 409 25059 rs3742489 ZNF409 22830 14 23072727 XM_375065 XP_375065 G/T P550T plus 24579515 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq" 14q11.2 zinc finger protein 409 25060 rs3742536 NID2 22795 14 51577179 NM_007361 NP_031387 C/T S656P minus 4928542 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.19 121 "HapMap,doubleHit,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 25061 rs3742536 NID2 22795 14 51577179 NM_007361 NP_031387 C/T S656P minus 10725227 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 121 "HapMap,doubleHit,freq,cluster" 14q21-q22 nidogen 2 (osteonidogen) 25062 rs3742569 FBXO34 55030 14 54888459 NM_017943 NP_060413 C/T L533P plus 4928575 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.38 123 "HapMap,doubleHit,freq,cluster" 14q22.2 F-box protein 34 25063 rs3742569 FBXO34 55030 14 54888459 NM_017943 NP_060413 C/T L533P plus 12293166 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.48 123 "HapMap,doubleHit,freq,cluster" 14q22.2 F-box protein 34 25064 rs3742569 FBXO34 55030 14 54888459 NM_017943 NP_060413 C/T L533P plus 24588903 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 14q22.2 F-box protein 34 25065 rs3742569 FBXO34 55030 14 54888459 NM_017943 NP_060413 C/T L533P plus 24588903 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 14q22.2 F-box protein 34 25066 rs3742569 FBXO34 55030 14 54888459 NM_017943 NP_060413 C/T L533P plus 24588903 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 14q22.2 F-box protein 34 25067 rs3742592 STELLAR 400206 14 35910401 XM_375075 XP_375075 A/T N11I plus 4928598 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.03 107 by freq 14q13.2 germ and embryonic stem cell enriched protein STELLA 25068 rs3742636 SIX4 51804 14 60250410 NM_017420 NP_059116 A/C H584P minus 4928642 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.49 123 "HapMap,doubleHit,freq,cluster" 14q23 sine oculis homeobox homolog 4 (Drosophila) 25069 rs3742636 SIX4 51804 14 60250410 NM_017420 NP_059116 A/C H584P minus 4928642 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 14q23 sine oculis homeobox homolog 4 (Drosophila) 25070 rs3742636 SIX4 51804 14 60250410 NM_017420 NP_059116 A/C H584P minus 23667451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 14q23 sine oculis homeobox homolog 4 (Drosophila) 25071 rs3742636 SIX4 51804 14 60250410 NM_017420 NP_059116 A/C H584P minus 23667451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 14q23 sine oculis homeobox homolog 4 (Drosophila) 25072 rs3742636 SIX4 51804 14 60250410 NM_017420 NP_059116 A/C H584P minus 23667451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 14q23 sine oculis homeobox homolog 4 (Drosophila) 25073 rs3742704 GPR65 8477 14 87547635 NM_003608 NP_003599 G/T I231L minus 4928710 738 YUSUKE JBIC-ALLELE Japanese (752) 1268 0.18 123 "HapMap,freq,cluster" 14q31-q32.1 G protein-coupled receptor 65 25074 rs3742704 GPR65 8477 14 87547635 NM_003608 NP_003599 G/T I231L minus 4928710 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq,cluster" 14q31-q32.1 G protein-coupled receptor 65 25075 rs3742704 GPR65 8477 14 87547635 NM_003608 NP_003599 G/T I231L minus 23800536 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "HapMap,freq,cluster" 14q31-q32.1 G protein-coupled receptor 65 25076 rs3742704 GPR65 8477 14 87547635 NM_003608 NP_003599 G/T I231L minus 23800536 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq,cluster" 14q31-q32.1 G protein-coupled receptor 65 25077 rs3742704 GPR65 8477 14 87547635 NM_003608 NP_003599 G/T I231L minus 23800536 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 14q31-q32.1 G protein-coupled receptor 65 25078 rs3742728 THSD3 145501 14 77020877 NM_182509 NP_872315 A/G A94T minus 4928734 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.05 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25079 rs3742728 THSD3 145501 14 77020877 NM_182509 NP_872315 A/G A94T minus 6770805 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25080 rs3742728 THSD3 145501 14 77020877 NM_199265 NP_954874 A/G A6T minus 4928734 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.05 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25081 rs3742728 THSD3 145501 14 77020877 NM_199265 NP_954874 A/G A6T minus 6770805 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25082 rs3742728 THSD3 145501 14 77020877 NM_199296 NP_954993 A/G A94T minus 4928734 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.05 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25083 rs3742728 THSD3 145501 14 77020877 NM_199296 NP_954993 A/G A94T minus 6770805 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.42 121 "HapMap,doubleHit,freq,cluster" 14q24.3 "thrombospondin, type I domain containing 3" 25084 rs3742801 ABCD4 5826 14 73828759 NM_005050 NP_005041 A/G E368K minus 4928807 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25085 rs3742801 ABCD4 5826 14 73828759 NM_005050 NP_005041 A/G E368K minus 4928807 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25086 rs3742801 ABCD4 5826 14 73828759 NM_005050 NP_005041 A/G E368K minus 24606660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25087 rs3742801 ABCD4 5826 14 73828759 NM_005050 NP_005041 A/G E368K minus 24606660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25088 rs3742801 ABCD4 5826 14 73828759 NM_005050 NP_005041 A/G E368K minus 24606660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25089 rs3742801 ABCD4 5826 14 73828759 NM_020324 NP_064720 A/G E209K minus 4928807 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25090 rs3742801 ABCD4 5826 14 73828759 NM_020324 NP_064720 A/G E209K minus 4928807 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25091 rs3742801 ABCD4 5826 14 73828759 NM_020324 NP_064720 A/G E209K minus 24606660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25092 rs3742801 ABCD4 5826 14 73828759 NM_020324 NP_064720 A/G E209K minus 24606660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25093 rs3742801 ABCD4 5826 14 73828759 NM_020324 NP_064720 A/G E209K minus 24606660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25094 rs3742801 ABCD4 5826 14 73828759 NM_020325 NP_064730 A/G E368K minus 4928807 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25095 rs3742801 ABCD4 5826 14 73828759 NM_020325 NP_064730 A/G E368K minus 4928807 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25096 rs3742801 ABCD4 5826 14 73828759 NM_020325 NP_064730 A/G E368K minus 24606660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25097 rs3742801 ABCD4 5826 14 73828759 NM_020325 NP_064730 A/G E368K minus 24606660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25098 rs3742801 ABCD4 5826 14 73828759 NM_020325 NP_064730 A/G E368K minus 24606660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25099 rs3742801 ABCD4 5826 14 73828759 NM_020326 NP_064731 A/G E368K minus 4928807 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.24 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25100 rs3742801 ABCD4 5826 14 73828759 NM_020326 NP_064731 A/G E368K minus 4928807 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25101 rs3742801 ABCD4 5826 14 73828759 NM_020326 NP_064731 A/G E368K minus 24606660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25102 rs3742801 ABCD4 5826 14 73828759 NM_020326 NP_064731 A/G E368K minus 24606660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25103 rs3742801 ABCD4 5826 14 73828759 NM_020326 NP_064731 A/G E368K minus 24606660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 14q24.3 "ATP-binding cassette, sub-family D (ALD), member 4" 25104 rs3742819 PTE2B 122970 14 73128585 NM_152331 NP_689544 A/G R57C minus 4928825 738 YUSUKE JBIC-ALLELE Japanese (752) 900 0.31 119 "by cluster,freq" 14q24.2 peroxisomal acyl-CoA thioesterase 2B 25105 rs3742883 ZFYVE26 23503 14 67304292 NM_015346 NP_056161 C/T N1891S plus 4928890 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.15 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25106 rs3742883 ZFYVE26 23503 14 67304292 NM_015346 NP_056161 C/T N1891S plus 4928890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25107 rs3742883 ZFYVE26 23503 14 67304292 NM_015346 NP_056161 C/T N1891S plus 23796081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25108 rs3742883 ZFYVE26 23503 14 67304292 NM_015346 NP_056161 C/T N1891S plus 23796081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25109 rs3742883 ZFYVE26 23503 14 67304292 NM_015346 NP_056161 C/T N1891S plus 23796081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25110 rs3742884 ZFYVE26 23503 14 67321687 NM_015346 NP_056161 A/G A1122V plus 4928891 738 YUSUKE JBIC-ALLELE Japanese (752) 1436 0.07 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25111 rs3742884 ZFYVE26 23503 14 67321687 NM_015346 NP_056161 A/G A1122V plus 4928891 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25112 rs3742884 ZFYVE26 23503 14 67321687 NM_015346 NP_056161 A/G A1122V plus 23796122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25113 rs3742884 ZFYVE26 23503 14 67321687 NM_015346 NP_056161 A/G A1122V plus 23796122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25114 rs3742884 ZFYVE26 23503 14 67321687 NM_015346 NP_056161 A/G A1122V plus 23796122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25115 rs3742885 ZFYVE26 23503 14 67321744 NM_015346 NP_056161 A/G P1103L plus 4928892 738 YUSUKE JBIC-ALLELE Japanese (752) 1102 0.14 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25116 rs3742885 ZFYVE26 23503 14 67321744 NM_015346 NP_056161 A/G P1103L plus 4928892 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25117 rs3742885 ZFYVE26 23503 14 67321744 NM_015346 NP_056161 A/G P1103L plus 23796124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25118 rs3742885 ZFYVE26 23503 14 67321744 NM_015346 NP_056161 A/G P1103L plus 23796124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25119 rs3742885 ZFYVE26 23503 14 67321744 NM_015346 NP_056161 A/G P1103L plus 23796124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 14q24.1 "zinc finger, FYVE domain containing 26" 25120 rs3742926 AKAP6 9472 14 32084620 NM_004274 NP_004265 C/T A337V plus 4928933 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.17 123 "HapMap,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 25121 rs3742926 AKAP6 9472 14 32084620 NM_004274 NP_004265 C/T A337V plus 4928933 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 25122 rs3742926 AKAP6 9472 14 32084620 NM_004274 NP_004265 C/T A337V plus 23583461 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 25123 rs3742926 AKAP6 9472 14 32084620 NM_004274 NP_004265 C/T A337V plus 23583461 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 25124 rs3742926 AKAP6 9472 14 32084620 NM_004274 NP_004265 C/T A337V plus 23583461 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 25125 rs3742945 TTC5 91875 14 19839876 NM_138376 NP_612385 A/G Q47R minus 4928952 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.2 120 "HapMap,doubleHit,freq,cluster" 14q11.2 tetratricopeptide repeat domain 5 25126 rs3742945 TTC5 91875 14 19839876 NM_138376 NP_612385 A/G Q47R minus 14387874 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 120 "HapMap,doubleHit,freq,cluster" 14q11.2 tetratricopeptide repeat domain 5 25127 rs3742946 KIF26A 26153 14 103712197 XM_050278 XP_050278 C/T G1087S minus 4928953 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.05 107 HapMap 14q32.33 kinesin family member 26A 25128 rs3742946 KIF26A 26153 14 103712197 XM_050278 XP_050278 C/T G1087S minus 4928953 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 14q32.33 kinesin family member 26A 25129 rs3742970 LCMT2 9836 15 41409557 NM_014793 NP_055608 A/C R141S plus 4928977 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.14 107 by freq 15q15.1 leucine carboxyl methyltransferase 2 25130 rs3743044 USP8 9101 15 48561079 NM_005154 NP_005145 A/G D443G plus 4929051 738 YUSUKE JBIC-ALLELE Japanese (752) 932 0.16 121 "by cluster,freq" 15q15.3 ubiquitin specific protease 8 25131 rs3743091 SPESP1 246777 15 67025326 NM_145658 NP_663633 G/T L133F plus 4929098 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 123 "by cluster,freq" 15q22.31 sperm equatorial segment protein 1 25132 rs3743091 SPESP1 246777 15 67025326 NM_145658 NP_663633 G/T L133F plus 23990002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 15q22.31 sperm equatorial segment protein 1 25133 rs3743091 SPESP1 246777 15 67025326 NM_145658 NP_663633 G/T L133F plus 23990002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 15q22.31 sperm equatorial segment protein 1 25134 rs3743091 SPESP1 246777 15 67025326 NM_145658 NP_663633 G/T L133F plus 23990002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 15q22.31 sperm equatorial segment protein 1 25135 rs3743093 SPESP1 246777 15 67025499 NM_145658 NP_663633 A/G G191E plus 4929100 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.42 123 "by doubleHit,freq,cluster" 15q22.31 sperm equatorial segment protein 1 25136 rs3743093 SPESP1 246777 15 67025499 NM_145658 NP_663633 A/G G191E plus 23990026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq,cluster" 15q22.31 sperm equatorial segment protein 1 25137 rs3743093 SPESP1 246777 15 67025499 NM_145658 NP_663633 A/G G191E plus 23990026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 15q22.31 sperm equatorial segment protein 1 25138 rs3743093 SPESP1 246777 15 67025499 NM_145658 NP_663633 A/G G191E plus 23990026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 15q22.31 sperm equatorial segment protein 1 25139 rs3743135 PAK6 56924 15 38345774 NM_020168 NP_064553 A/G H215R plus 4929142 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.17 123 "HapMap,doubleHit,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 25140 rs3743135 PAK6 56924 15 38345774 NM_020168 NP_064553 A/G H215R plus 6092636 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 25141 rs3743135 PAK6 56924 15 38345774 NM_020168 NP_064553 A/G H215R plus 23491720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 25142 rs3743135 PAK6 56924 15 38345774 NM_020168 NP_064553 A/G H215R plus 23491720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 25143 rs3743135 PAK6 56924 15 38345774 NM_020168 NP_064553 A/G H215R plus 23491720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 15q14 p21(CDKN1A)-activated kinase 6 25144 rs3743137 PAK6 56924 15 38351868 NM_020168 NP_064553 C/T P337L plus 4929144 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.12 107 by freq 15q14 p21(CDKN1A)-activated kinase 6 25145 rs3743142 DISP2 85455 15 38449344 NM_033510 NP_277045 C/T R1247W plus 4929149 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.02 107 HapMap 15q14 dispatched homolog 2 (Drosophila) 25146 rs3743142 DISP2 85455 15 38449344 NM_033510 NP_277045 C/T R1247W plus 4929149 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 15q14 dispatched homolog 2 (Drosophila) 25147 rs3743143 BAHD1 22893 15 38538032 NM_014952 NP_055767 A/G E26G plus 4929150 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 107 by freq 15q14 bromo adjacent homology domain containing 1 25148 rs3743193 CHSY1 22856 15 99536450 NM_014918 NP_055733 C/T P359S minus 4929200 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.25 123 "HapMap,freq,cluster" 15q26.3 carbohydrate (chondroitin) synthase 1 25149 rs3743193 CHSY1 22856 15 99536450 NM_014918 NP_055733 C/T P359S minus 4929200 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.09 123 "HapMap,freq,cluster" 15q26.3 carbohydrate (chondroitin) synthase 1 25150 rs3743193 CHSY1 22856 15 99536450 NM_014918 NP_055733 C/T P359S minus 24126517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 15q26.3 carbohydrate (chondroitin) synthase 1 25151 rs3743193 CHSY1 22856 15 99536450 NM_014918 NP_055733 C/T P359S minus 24126517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 15q26.3 carbohydrate (chondroitin) synthase 1 25152 rs3743193 CHSY1 22856 15 99536450 NM_014918 NP_055733 C/T P359S minus 24126517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 15q26.3 carbohydrate (chondroitin) synthase 1 25153 rs3743279 SEMA6D 80031 15 45843511 NM_020858 NP_065909 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25154 rs3743279 SEMA6D 80031 15 45843511 NM_020858 NP_065909 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25155 rs3743279 SEMA6D 80031 15 45843511 NM_020858 NP_065909 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25156 rs3743279 SEMA6D 80031 15 45843511 NM_020858 NP_065909 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25157 rs3743279 SEMA6D 80031 15 45843511 NM_024966 NP_079242 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25158 rs3743279 SEMA6D 80031 15 45843511 NM_024966 NP_079242 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25159 rs3743279 SEMA6D 80031 15 45843511 NM_024966 NP_079242 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25160 rs3743279 SEMA6D 80031 15 45843511 NM_024966 NP_079242 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25161 rs3743279 SEMA6D 80031 15 45843511 NM_153616 NP_705869 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25162 rs3743279 SEMA6D 80031 15 45843511 NM_153616 NP_705869 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25163 rs3743279 SEMA6D 80031 15 45843511 NM_153616 NP_705869 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25164 rs3743279 SEMA6D 80031 15 45843511 NM_153616 NP_705869 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25165 rs3743279 SEMA6D 80031 15 45843511 NM_153617 NP_705870 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25166 rs3743279 SEMA6D 80031 15 45843511 NM_153617 NP_705870 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25167 rs3743279 SEMA6D 80031 15 45843511 NM_153617 NP_705870 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25168 rs3743279 SEMA6D 80031 15 45843511 NM_153617 NP_705870 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25169 rs3743279 SEMA6D 80031 15 45843511 NM_153618 NP_705871 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25170 rs3743279 SEMA6D 80031 15 45843511 NM_153618 NP_705871 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25171 rs3743279 SEMA6D 80031 15 45843511 NM_153618 NP_705871 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25172 rs3743279 SEMA6D 80031 15 45843511 NM_153618 NP_705871 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25173 rs3743279 SEMA6D 80031 15 45843511 NM_153619 NP_705872 A/G N307S plus 4929286 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.04 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25174 rs3743279 SEMA6D 80031 15 45843511 NM_153619 NP_705872 A/G N307S plus 23423486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25175 rs3743279 SEMA6D 80031 15 45843511 NM_153619 NP_705872 A/G N307S plus 23423486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25176 rs3743279 SEMA6D 80031 15 45843511 NM_153619 NP_705872 A/G N307S plus 23423486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 15q15.2 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D" 25177 rs3743315 UACA 55075 15 68747636 NM_018003 NP_060473 A/G I814T plus 4929322 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.05 107 HapMap 15q22-q24 uveal autoantigen with coiled-coil domains and ankyrin repeats 25178 rs3743315 UACA 55075 15 68747636 NM_018003 NP_060473 A/G I814T plus 4929322 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q22-q24 uveal autoantigen with coiled-coil domains and ankyrin repeats 25179 rs3743323 AKAP13 11214 15 84067346 NM_006738 NP_006729 A/G S2183N plus 4929330 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25180 rs3743323 AKAP13 11214 15 84067346 NM_006738 NP_006729 A/G S2183N plus 4929330 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25181 rs3743323 AKAP13 11214 15 84067346 NM_007200 NP_009131 A/G S2179N plus 4929330 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25182 rs3743323 AKAP13 11214 15 84067346 NM_007200 NP_009131 A/G S2179N plus 4929330 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25183 rs3743323 AKAP13 11214 15 84067346 NM_144767 NP_658913 A/G S424N plus 4929330 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25184 rs3743323 AKAP13 11214 15 84067346 NM_144767 NP_658913 A/G S424N plus 4929330 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 107 HapMap 15q24-q25 A kinase (PRKA) anchor protein 13 25185 rs3743373 PLIN 5346 15 88011923 NM_002666 NP_002657 C/T E293K plus 4929380 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 117 "HapMap,cluster" 15q26 perilipin 25186 rs3743373 PLIN 5346 15 88011923 NM_002666 NP_002657 C/T E293K plus 12535104 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,cluster" 15q26 perilipin 25187 rs3743503 BM039 55839 16 79613942 NM_018455 NP_060925 A/C *205E minus 4929510 738 YUSUKE JBIC-ALLELE Japanese (752) 714 0.19 107 "HapMap,freq" 16q23.2 uncharacterized bone marrow protein BM039 25188 rs3743503 BM039 55839 16 79613942 NM_018455 NP_060925 A/C *205E minus 4929510 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.16 107 "HapMap,freq" 16q23.2 uncharacterized bone marrow protein BM039 25189 rs3743563 MMP15 4324 16 56636666 NM_002428 NP_002419 A/G G609R plus 4929570 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.4 107 "HapMap,freq" 16q13-q21 matrix metalloproteinase 15 (membrane-inserted) 25190 rs3743563 MMP15 4324 16 56636666 NM_002428 NP_002419 A/G G609R plus 4929570 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.25 107 "HapMap,freq" 16q13-q21 matrix metalloproteinase 15 (membrane-inserted) 25191 rs3743598 ADAT1 23536 16 74204186 NM_012091 NP_036223 A/C H167N minus 4929605 738 YUSUKE JBIC-ALLELE Japanese (752) 1106 0.2 123 "HapMap,doubleHit,freq,cluster" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25192 rs3743598 ADAT1 23536 16 74204186 NM_012091 NP_036223 A/C H167N minus 16697754 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 123 "HapMap,doubleHit,freq,cluster" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25193 rs3743598 ADAT1 23536 16 74204186 NM_012091 NP_036223 A/C H167N minus 23756093 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25194 rs3743598 ADAT1 23536 16 74204186 NM_012091 NP_036223 A/C H167N minus 23756093 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25195 rs3743598 ADAT1 23536 16 74204186 NM_012091 NP_036223 A/C H167N minus 23756093 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25196 rs3743599 ADAT1 23536 16 74204077 NM_012091 NP_036223 A/C T203N minus 4929606 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.3 123 "HapMap,freq" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25197 rs3743599 ADAT1 23536 16 74204077 NM_012091 NP_036223 A/C T203N minus 4929606 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25198 rs3743599 ADAT1 23536 16 74204077 NM_012091 NP_036223 A/C T203N minus 24191180 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.08 123 "HapMap,freq" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25199 rs3743599 ADAT1 23536 16 74204077 NM_012091 NP_036223 A/C T203N minus 24191180 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.03 123 "HapMap,freq" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25200 rs3743599 ADAT1 23536 16 74204077 NM_012091 NP_036223 A/C T203N minus 24191180 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq" 16q23.1 "adenosine deaminase, tRNA-specific 1" 25201 rs3743640 TAF1C 9013 16 82770236 NM_005679 NP_005670 A/G P808S plus 4929647 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 107 HapMap 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 25202 rs3743640 TAF1C 9013 16 82770236 NM_005679 NP_005670 A/G P808S plus 4929647 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 25203 rs3743640 TAF1C 9013 16 82770236 NM_139353 NP_647610 A/G P714S plus 4929647 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 107 HapMap 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 25204 rs3743640 TAF1C 9013 16 82770236 NM_139353 NP_647610 A/G P714S plus 4929647 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 25205 rs3743695 DNAH3 55567 16 20882338 NM_017539 NP_060009 C/T E3457K plus 4929702 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 25206 rs3743695 DNAH3 55567 16 20882338 NM_017539 NP_060009 C/T E3457K plus 4929702 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 25207 rs3743715 TK2 7084 16 65141495 NM_004614 NP_004605 C/G P33A plus 28458631 549 KYUGEN CP CEPH (78) 156 0.01 123 "by cluster,freq" 16q22-q23.1 "thymidine kinase 2, mitochondrial" 25208 rs3743715 TK2 7084 16 65141495 NM_004614 NP_004605 C/G P33A plus 28458631 1335 KYUGEN JPK2 Japanese (100) 200 0.16 123 "by cluster,freq" 16q22-q23.1 "thymidine kinase 2, mitochondrial" 25209 rs3743716 TK2 7084 16 65141503 NM_004614 NP_004605 C/T K30R plus 28458630 549 KYUGEN CP CEPH (78) 156 0.12 123 "by doubleHit,freq,cluster" 16q22-q23.1 "thymidine kinase 2, mitochondrial" 25210 rs3743716 TK2 7084 16 65141503 NM_004614 NP_004605 C/T K30R plus 28458630 1335 KYUGEN JPK2 Japanese (100) 200 0.29 123 "by doubleHit,freq,cluster" 16q22-q23.1 "thymidine kinase 2, mitochondrial" 25211 rs3743728 FBXL9 26231 16 65799777 NM_012163 NP_036295 A/G R75Q minus 4929735 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.03 107 HapMap 16q22.1 F-box and leucine-rich repeat protein 9 25212 rs3743728 FBXL9 26231 16 65799777 NM_012163 NP_036295 A/G R75Q minus 4929735 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16q22.1 F-box and leucine-rich repeat protein 9 25213 rs3743736 NFATC3 4775 16 66713568 NM_004555 NP_004546 A/C E94A plus 4929743 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25214 rs3743736 NFATC3 4775 16 66713568 NM_004555 NP_004546 A/C E94A plus 4929743 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25215 rs3743736 NFATC3 4775 16 66713568 NM_173163 NP_775186 A/C E94A plus 4929743 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25216 rs3743736 NFATC3 4775 16 66713568 NM_173163 NP_775186 A/C E94A plus 4929743 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25217 rs3743736 NFATC3 4775 16 66713568 NM_173164 NP_775187 A/C E94A plus 4929743 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25218 rs3743736 NFATC3 4775 16 66713568 NM_173164 NP_775187 A/C E94A plus 4929743 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25219 rs3743736 NFATC3 4775 16 66713568 NM_173165 NP_775188 A/C E94A plus 4929743 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25220 rs3743736 NFATC3 4775 16 66713568 NM_173165 NP_775188 A/C E94A plus 4929743 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 25221 rs3743749 ADAMTS18 170692 16 75880736 NM_199355 NP_955387 C/G S1159T minus 4929756 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.2 123 "HapMap,freq" 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 25222 rs3743749 ADAMTS18 170692 16 75880736 NM_199355 NP_955387 C/G S1159T minus 4929756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq" 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 25223 rs3743749 ADAMTS18 170692 16 75880736 NM_199355 NP_955387 C/G S1159T minus 24680151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.18 123 "HapMap,freq" 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 25224 rs3743749 ADAMTS18 170692 16 75880736 NM_199355 NP_955387 C/G S1159T minus 24680151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "HapMap,freq" 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 25225 rs3743749 ADAMTS18 170692 16 75880736 NM_199355 NP_955387 C/G S1159T minus 24680151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "HapMap,freq" 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 25226 rs3743788 SLC6A2 6530 16 54291607 NM_001043 NP_001034 C/T I549T plus 4929795 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 123 "HapMap,freq,cluster" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 25227 rs3743788 SLC6A2 6530 16 54291607 NM_001043 NP_001034 C/T I549T plus 4929795 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 25228 rs3743788 SLC6A2 6530 16 54291607 NM_001043 NP_001034 C/T I549T plus 23986885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 25229 rs3743788 SLC6A2 6530 16 54291607 NM_001043 NP_001034 C/T I549T plus 23986885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 25230 rs3743788 SLC6A2 6530 16 54291607 NM_001043 NP_001034 C/T I549T plus 23986885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 25231 rs3743808 PMM2 5373 16 8814459 NM_000303 NP_000294 C/T M212V minus 4929815 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 107 by freq 16p13.3-p13.2 phosphomannomutase 2 25232 rs3743868 CASKIN1 57524 16 2171298 NM_020764 NP_065815 A/G R691Q minus 4929875 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 HapMap 16p13.3 CASK interacting protein 1 25233 rs3743868 CASKIN1 57524 16 2171298 NM_020764 NP_065815 A/G R691Q minus 4929875 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16p13.3 CASK interacting protein 1 25234 rs3743887 TMEM8 58986 16 364278 NM_021259 NP_067082 A/G R567W plus 4929894 738 YUSUKE JBIC-ALLELE Japanese (752) 1108 0.08 119 "HapMap,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 25235 rs3743887 TMEM8 58986 16 364278 NM_021259 NP_067082 A/G R567W plus 13399974 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 119 "HapMap,freq,cluster" 16p13.3 transmembrane protein 8 (five membrane-spanning domains) 25236 rs3743913 RHOT2 89941 16 660987 NM_138769 NP_620124 A/G R245Q plus 4929920 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.32 123 "by cluster,freq" 16p13.3 "ras homolog gene family, member T2" 25237 rs3743989 LONP 83752 16 46852848 NM_031490 NP_113678 A/G R246C minus 4929997 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16q12.1 peroxisomal lon protease 25238 rs3744013 FBF1 85302 17 71425850 XM_371079 XP_371079 A/G T731I plus 4930021 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 17q25.3 Fas (TNFRSF6) binding factor 1 25239 rs3744032 ACOX1 51 17 71481430 NM_007292 NP_009223 C/T G101S plus 4930040 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.15 123 "HapMap,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 25240 rs3744032 ACOX1 51 17 71481430 NM_007292 NP_009223 C/T G101S plus 4930040 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 25241 rs3744032 ACOX1 51 17 71481430 NM_007292 NP_009223 C/T G101S plus 24019961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 "HapMap,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 25242 rs3744032 ACOX1 51 17 71481430 NM_007292 NP_009223 C/T G101S plus 24019961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 25243 rs3744032 ACOX1 51 17 71481430 NM_007292 NP_009223 C/T G101S plus 24019961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq,cluster" 17q24-17q25 "acyl-Coenzyme A oxidase 1, palmitoyl" 25244 rs3744099 BZRAP1 9256 17 53743302 NM_004758 NP_004749 A/T H1118L minus 4930107 738 YUSUKE JBIC-ALLELE Japanese (752) 1310 0.12 120 "by cluster,freq" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 25245 rs3744099 BZRAP1 9256 17 53743302 NM_004758 NP_004749 A/T H1118L minus 20040348 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 25246 rs3744101 BZRAP1 9256 17 53742461 NM_004758 NP_004749 C/T R1253C minus 4930109 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 107 HapMap 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 25247 rs3744101 BZRAP1 9256 17 53742461 NM_004758 NP_004749 C/T R1253C minus 4930109 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 25248 rs3744108 MTMR4 9110 17 53940871 NM_004687 NP_004678 C/G L170V plus 4930116 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 111 "HapMap,freq,cluster" 17q22-q23 myotubularin related protein 4 25249 rs3744108 MTMR4 9110 17 53940871 NM_004687 NP_004678 C/G L170V plus 6615637 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 111 "HapMap,freq,cluster" 17q22-q23 myotubularin related protein 4 25250 rs3744124 BHD 201163 17 17065540 NM_144606 NP_653207 A/G G303R minus 4930132 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.18 119 "HapMap,doubleHit,freq,cluster" 17p11.2 folliculin 25251 rs3744124 BHD 201163 17 17065540 NM_144606 NP_653207 A/G G303R minus 14279451 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 119 "HapMap,doubleHit,freq,cluster" 17p11.2 folliculin 25252 rs3744241 RUNDC1 146923 17 38397113 NM_173079 NP_775102 A/G E566K plus 4930249 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 by freq 17q21.31 RUN domain containing 1 25253 rs3744307 SLC16A6 9120 17 63779245 NM_004694 NP_004685 A/C E217D minus 4930315 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.18 120 "by doubleHit,freq,cluster" 17q24.3 "solute carrier family 16 (monocarboxylic acid transporters), member 6" 25254 rs3744372 SLFN5 342615 17 30826269 XM_496206 XP_496206 G/T Y547S plus 4930380 738 YUSUKE JBIC-ALLELE Japanese (752) 1438 0.2 123 "by cluster,freq" 17q21.1 schlafen 5 25255 rs3744374 GAS2L2 246176 17 31096668 NM_139285 NP_644814 A/G A654V plus 4930382 738 YUSUKE JBIC-ALLELE Japanese (752) 1302 0.19 107 "HapMap,freq" 17q21.1 GAS2-related protein 25256 rs3744374 GAS2L2 246176 17 31096668 NM_139285 NP_644814 A/G A654V plus 4930382 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 107 "HapMap,freq" 17q21.1 GAS2-related protein 25257 rs3744376 ABC1 63897 17 55510846 NM_022070 NP_071353 A/G A71V plus 4930384 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.05 123 "HapMap,freq,cluster" 17q23.2-q23.3 amplified in breast cancer 1 25258 rs3744376 ABC1 63897 17 55510846 NM_022070 NP_071353 A/G A71V plus 4930384 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 17q23.2-q23.3 amplified in breast cancer 1 25259 rs3744376 ABC1 63897 17 55510846 NM_022070 NP_071353 A/G A71V plus 23598375 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,freq,cluster" 17q23.2-q23.3 amplified in breast cancer 1 25260 rs3744376 ABC1 63897 17 55510846 NM_022070 NP_071353 A/G A71V plus 23598375 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "HapMap,freq,cluster" 17q23.2-q23.3 amplified in breast cancer 1 25261 rs3744376 ABC1 63897 17 55510846 NM_022070 NP_071353 A/G A71V plus 23598375 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq,cluster" 17q23.2-q23.3 amplified in breast cancer 1 25262 rs3744395 TEKT1 83659 17 6656966 NM_053285 NP_444515 A/G R254C plus 4930403 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.45 121 "HapMap,doubleHit,freq,cluster" 17p13.2 tektin 1 25263 rs3744395 TEKT1 83659 17 6656966 NM_053285 NP_444515 A/G R254C plus 4930403 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.18 121 "HapMap,doubleHit,freq,cluster" 17p13.2 tektin 1 25264 rs3744438 TBX4 9496 17 56912382 NM_018488 NP_060958 A/G A314V minus 4930446 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.11 107 by freq 17q21-q22 T-box 4 25265 rs3744448 TBX4 9496 17 56888650 NM_018488 NP_060958 C/G G6A minus 4930456 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.38 119 "by doubleHit,freq,cluster" 17q21-q22 T-box 4 25266 rs3744508 CCL11 6356 17 29637007 NM_002986 NP_002977 C/T A23T minus 4930516 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.14 111 "HapMap,freq,cluster" 17q21.1-q21.2 chemokine (C-C motif) ligand 11 25267 rs3744508 CCL11 6356 17 29637007 NM_002986 NP_002977 C/T A23T minus 5968339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 111 "HapMap,freq,cluster" 17q21.1-q21.2 chemokine (C-C motif) ligand 11 25268 rs3744549 PLSCR3 57048 17 7234439 NM_020360 NP_065093 C/T V293I plus 4930557 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.29 121 "HapMap,doubleHit,freq,cluster" 17p13.2 phospholipid scramblase 3 25269 rs3744549 PLSCR3 57048 17 7234439 NM_020360 NP_065093 C/T V293I plus 17581354 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 121 "HapMap,doubleHit,freq,cluster" 17p13.2 phospholipid scramblase 3 25270 rs3744550 MYH13 8735 17 10147320 NM_003802 NP_003793 C/T H1862R plus 4930558 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.32 123 "HapMap,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 25271 rs3744550 MYH13 8735 17 10147320 NM_003802 NP_003793 C/T H1862R plus 4930558 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 25272 rs3744550 MYH13 8735 17 10147320 NM_003802 NP_003793 C/T H1862R plus 24122081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 25273 rs3744550 MYH13 8735 17 10147320 NM_003802 NP_003793 C/T H1862R plus 24122081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 25274 rs3744550 MYH13 8735 17 10147320 NM_003802 NP_003793 C/T H1862R plus 24122081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 25275 rs3744554 MYH4 4622 17 10287506 NM_017533 NP_060003 C/T K1911E plus 4930562 738 YUSUKE JBIC-ALLELE Japanese (752) 716 0.16 121 "HapMap,doubleHit,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25276 rs3744554 MYH4 4622 17 10287506 NM_017533 NP_060003 C/T K1911E plus 4930562 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,freq,cluster" 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25277 rs3744558 MYH4 4622 17 10298640 NM_017533 NP_060003 A/G T883M plus 4930566 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.09 123 by freq 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25278 rs3744558 MYH4 4622 17 10298640 NM_017533 NP_060003 A/G T883M plus 24210789 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25279 rs3744558 MYH4 4622 17 10298640 NM_017533 NP_060003 A/G T883M plus 24210789 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25280 rs3744558 MYH4 4622 17 10298640 NM_017533 NP_060003 A/G T883M plus 24210789 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 17p13.1 "myosin, heavy polypeptide 4, skeletal muscle" 25281 rs3744564 MYH1 4619 17 10342828 NM_005963 NP_005954 A/G R1341C plus 4930572 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.01 107 HapMap 17p13.1 "myosin, heavy polypeptide 1, skeletal muscle, adult" 25282 rs3744564 MYH1 4619 17 10342828 NM_005963 NP_005954 A/G R1341C plus 4930572 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.1 "myosin, heavy polypeptide 1, skeletal muscle, adult" 25283 rs3744574 DNAH9 1770 17 11461558 NM_001372 NP_001363 C/T P337L plus 4930582 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p12 "dynein, axonemal, heavy polypeptide 9" 25284 rs3744577 DNAH9 1770 17 11589025 NM_001372 NP_001363 A/G A2100T plus 4930585 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 107 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 25285 rs3744581 DNAH9 1770 17 11591782 NM_001372 NP_001363 A/G N2195S plus 4930589 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.37 121 "HapMap,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 25286 rs3744581 DNAH9 1770 17 11591782 NM_001372 NP_001363 A/G N2195S plus 4930589 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 121 "HapMap,freq,cluster" 17p12 "dynein, axonemal, heavy polypeptide 9" 25287 rs3744644 SCARF1 8578 17 1485378 NM_003693 NP_003684 C/G E639D minus 4930652 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 121 "by doubleHit,freq,cluster" 17p13.3 "scavenger receptor class F, member 1" 25288 rs3744644 SCARF1 8578 17 1485378 NM_145352 NP_663327 C/G E553D minus 4930652 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 121 "by doubleHit,freq,cluster" 17p13.3 "scavenger receptor class F, member 1" 25289 rs3744647 ARHGEF15 22899 17 8165001 NM_173728 NP_776089 C/T S831P plus 4930655 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.47 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 25290 rs3744647 ARHGEF15 22899 17 8165001 NM_173728 NP_776089 C/T S831P plus 24209688 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 25291 rs3744647 ARHGEF15 22899 17 8165001 NM_173728 NP_776089 C/T S831P plus 24209688 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 25292 rs3744647 ARHGEF15 22899 17 8165001 NM_173728 NP_776089 C/T S831P plus 24209688 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 17p13.1 Rho guanine nucleotide exchange factor (GEF) 15 25293 rs3744679 ITGAE 3682 17 3582489 NM_002208 NP_002199 C/G Q892H minus 4930687 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.03 123 "by cluster,freq" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 25294 rs3744679 ITGAE 3682 17 3582489 NM_002208 NP_002199 C/G Q892H minus 23792099 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 25295 rs3744679 ITGAE 3682 17 3582489 NM_002208 NP_002199 C/G Q892H minus 23792099 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 25296 rs3744679 ITGAE 3682 17 3582489 NM_002208 NP_002199 C/G Q892H minus 23792099 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 17p13 "integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)" 25297 rs3744692 ALDH3A1 218 17 19584264 NM_000691 NP_000682 A/G G309E minus 4930700 738 YUSUKE JBIC-ALLELE Japanese (752) 1300 0.04 107 by freq 17p11.2 "aldehyde dehydrogenase 3 family, memberA1" 25298 rs3744718 NALP1 22861 17 5403529 NM_014922 NP_055737 C/T R404Q plus 4930726 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25299 rs3744718 NALP1 22861 17 5403529 NM_014922 NP_055737 C/T R404Q plus 4930726 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25300 rs3744718 NALP1 22861 17 5403529 NM_033004 NP_127497 C/T R404Q plus 4930726 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25301 rs3744718 NALP1 22861 17 5403529 NM_033004 NP_127497 C/T R404Q plus 4930726 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25302 rs3744718 NALP1 22861 17 5403529 NM_033006 NP_127499 C/T R404Q plus 4930726 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25303 rs3744718 NALP1 22861 17 5403529 NM_033006 NP_127499 C/T R404Q plus 4930726 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25304 rs3744718 NALP1 22861 17 5403529 NM_033007 NP_127500 C/T R404Q plus 4930726 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.07 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25305 rs3744718 NALP1 22861 17 5403529 NM_033007 NP_127500 C/T R404Q plus 4930726 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13 "NACHT, leucine rich repeat and PYD containing 1" 25306 rs3744741 GEMIN4 50628 17 595982 NM_015721 NP_056536 C/T R684Q plus 4930749 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.2 107 "HapMap,freq" 17p13 gem (nuclear organelle) associated protein 4 25307 rs3744741 GEMIN4 50628 17 595982 NM_015721 NP_056536 C/T R684Q plus 4930749 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 107 "HapMap,freq" 17p13 gem (nuclear organelle) associated protein 4 25308 rs3744786 KRTHA2 3882 17 36876889 NM_002278 NP_002269 C/T Q72R plus 4930794 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.29 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 25309 rs3744786 KRTHA2 3882 17 36876889 NM_002278 NP_002269 C/T Q72R plus 24098689 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 25310 rs3744786 KRTHA2 3882 17 36876889 NM_002278 NP_002269 C/T Q72R plus 24098689 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 25311 rs3744786 KRTHA2 3882 17 36876889 NM_002278 NP_002269 C/T Q72R plus 24098689 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 "by cluster,freq" 17q12-q21 "keratin, hair, acidic, 2" 25312 rs3744807 PYCR1 5831 17 77484109 NM_153824 NP_722546 C/T G297R plus 4930815 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 107 by freq 17q25.3 pyrroline-5-carboxylate reductase 1 25313 rs3744825 SETBP1 26040 18 40786604 NM_015559 NP_056374 A/G V1047I plus 4930833 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.32 123 "HapMap,doubleHit,freq,cluster" 18q21.1 SET binding protein 1 25314 rs3744825 SETBP1 26040 18 40786604 NM_015559 NP_056374 A/G V1047I plus 4930833 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 18q21.1 SET binding protein 1 25315 rs3744825 SETBP1 26040 18 40786604 NM_015559 NP_056374 A/G V1047I plus 24044416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 18q21.1 SET binding protein 1 25316 rs3744825 SETBP1 26040 18 40786604 NM_015559 NP_056374 A/G V1047I plus 24044416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 18q21.1 SET binding protein 1 25317 rs3744825 SETBP1 26040 18 40786604 NM_015559 NP_056374 A/G V1047I plus 24044416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 18q21.1 SET binding protein 1 25318 rs3744900 MOCOS 55034 18 32033703 NM_017947 NP_060417 A/G S120N plus 4930908 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 116 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 25319 rs3744900 MOCOS 55034 18 32033703 NM_017947 NP_060417 A/G S120N plus 12443221 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 116 "HapMap,freq,cluster" 18q12 molybdenum cofactor sulfurase 25320 rs3745009 SLC14A2 8170 18 41516357 NM_007163 NP_009094 C/T A880T minus 4931017 738 YUSUKE JBIC-ALLELE Japanese (752) 1284 0.42 123 "HapMap,doubleHit,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 25321 rs3745009 SLC14A2 8170 18 41516357 NM_007163 NP_009094 C/T A880T minus 14829476 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 25322 rs3745009 SLC14A2 8170 18 41516357 NM_007163 NP_009094 C/T A880T minus 24036458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 25323 rs3745009 SLC14A2 8170 18 41516357 NM_007163 NP_009094 C/T A880T minus 24036458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "HapMap,doubleHit,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 25324 rs3745009 SLC14A2 8170 18 41516357 NM_007163 NP_009094 C/T A880T minus 24036458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 25325 rs3745060 SIAT8C 51046 18 53172723 NM_015879 NP_056963 A/C K91T plus 4931068 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.49 119 "HapMap,doubleHit,freq,cluster" 18q21.31 "sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)" 25326 rs3745060 SIAT8C 51046 18 53172723 NM_015879 NP_056963 A/C K91T plus 14418088 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 119 "HapMap,doubleHit,freq,cluster" 18q21.31 "sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)" 25327 rs3745073 ONECUT2 9480 18 53294922 NM_004852 NP_004843 A/G S476L minus 4931081 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 18q21.1-q21.2 "one cut domain, family member 2" 25328 rs3745078 ATP8B1 5205 18 53493154 NM_005603 NP_005594 C/T I577V plus 4931086 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.05 107 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 25329 rs3745078 ATP8B1 5205 18 53493154 NM_005603 NP_005594 C/T I577V plus 4931086 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 25330 rs3745079 ATP8B1 5205 18 53524765 NM_005603 NP_005594 C/G H78Q minus 4931087 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.05 107 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 25331 rs3745079 ATP8B1 5205 18 53524765 NM_005603 NP_005594 C/G H78Q minus 4931087 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 18q21 "ATPase, Class I, type 8B, member 1" 25332 rs3745145 PVR 5817 19 49849089 NM_006505 NP_006496 C/G R269G minus 4931153 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.2 poliovirus receptor 25333 rs3745193 GTPBP3 84705 19 17312981 NM_032620 NP_116009 A/G R368H plus 4931203 738 YUSUKE JBIC-ALLELE Japanese (752) 876 0.33 107 by freq 19p13.12 GTP binding protein 3 (mitochondrial) 25334 rs3745193 GTPBP3 84705 19 17312981 NM_133644 NP_598399 A/G R400H plus 4931203 738 YUSUKE JBIC-ALLELE Japanese (752) 876 0.33 107 by freq 19p13.12 GTP binding protein 3 (mitochondrial) 25335 rs3745202 PRX 57716 19 45592851 NM_181882 NP_870998 C/G P1083R plus 4931212 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 25336 rs3745202 PRX 57716 19 45592851 NM_181882 NP_870998 C/G P1083R plus 4931212 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.2 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 25337 rs3745202 PRX 57716 19 45592851 NM_181882 NP_870998 C/G P1083R plus 24595997 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 25338 rs3745202 PRX 57716 19 45592851 NM_181882 NP_870998 C/G P1083R plus 24595997 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 25339 rs3745202 PRX 57716 19 45592851 NM_181882 NP_870998 C/G P1083R plus 24595997 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 19q13.13-q13.2 periaxin 25340 rs3745207 BLVRB 645 19 45649203 NM_000713 NP_000704 C/T R124Q plus 4931217 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.1-q13.2 biliverdin reductase B (flavin reductase (NADPH)) 25341 rs3745226 ZNF574 64763 19 47275593 NM_022752 NP_073589 A/G R332Q plus 4931236 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.01 107 HapMap 19q13.31 zinc finger protein 574 25342 rs3745226 ZNF574 64763 19 47275593 NM_022752 NP_073589 A/G R332Q plus 4931236 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.31 zinc finger protein 574 25343 rs3745227 ZNF574 64763 19 47275854 NM_022752 NP_073589 C/T P419L plus 4931237 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.31 zinc finger protein 574 25344 rs3745228 ZNF574 64763 19 47276952 NM_022752 NP_073589 A/G R785Q plus 4931238 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.31 zinc finger protein 574 25345 rs3745238 LIPE 3991 19 47622492 NM_005357 NP_005348 A/C R217L plus 4931248 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.2 "lipase, hormone-sensitive" 25346 rs3745268 EDG5 9294 19 10196403 NM_004230 NP_004221 A/G R60Q minus 4931278 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.01 107 HapMap 19p13.2 "endothelial differentiation, sphingolipid G-protein-coupled receptor, 5" 25347 rs3745268 EDG5 9294 19 10196403 NM_004230 NP_004221 A/G R60Q minus 4931278 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 19p13.2 "endothelial differentiation, sphingolipid G-protein-coupled receptor, 5" 25348 rs3745274 CYP2B6 1555 19 46204681 NM_000767 NP_000758 G/T Q172H plus 20421518 1244 PHARMGKB_PAAR-SJCRH PA130240278 166 0.26 121 "by doubleHit,freq,cluster" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 25349 rs3745297 HRC 3270 19 54350021 NM_002152 NP_002143 A/C S96A plus 4931307 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.28 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25350 rs3745297 HRC 3270 19 54350021 NM_002152 NP_002143 A/C S96A plus 24719467 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25351 rs3745297 HRC 3270 19 54350021 NM_002152 NP_002143 A/C S96A plus 24719467 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25352 rs3745297 HRC 3270 19 54350021 NM_002152 NP_002143 A/C S96A plus 24719467 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25353 rs3745298 HRC 3270 19 54350179 NM_002152 NP_002143 C/T S43N plus 4931308 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.32 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25354 rs3745298 HRC 3270 19 54350179 NM_002152 NP_002143 C/T S43N plus 24719468 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25355 rs3745298 HRC 3270 19 54350179 NM_002152 NP_002143 C/T S43N plus 24719468 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25356 rs3745298 HRC 3270 19 54350179 NM_002152 NP_002143 C/T S43N plus 24719468 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 19q13.3 histidine rich calcium binding protein 25357 rs3745340 CPAMD8 27151 19 16969135 NM_015692 NP_056507 C/T R294Q plus 4931350 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.49 107 by freq 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 25358 rs3745340 CPAMD8 27151 19 16969135 NM_015692 NP_056507 C/T R294Q plus 4931350 1303 SEQUENOM CEPH CEPH (92) 92 0.33 107 by freq 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 25359 rs3745442 LAIR1 3903 19 59564510 NM_002287 NP_002278 C/G E63D minus 4931452 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 19q13.4 leukocyte-associated Ig-like receptor 1 25360 rs3745442 LAIR1 3903 19 59564510 NM_021706 NP_068352 C/G E63D minus 4931452 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 19q13.4 leukocyte-associated Ig-like receptor 1 25361 rs3745442 LAIR1 3903 19 59564510 NM_021708 NP_068354 C/G E63D minus 4931452 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 19q13.4 leukocyte-associated Ig-like receptor 1 25362 rs3745470 SR-A1 58506 19 54848141 NM_021228 NP_067051 C/T T895A minus 4931480 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.1 107 HapMap 19q13.3-q13.4 serine arginine-rich pre-mRNA splicing factor SR-A1 25363 rs3745470 SR-A1 58506 19 54848141 NM_021228 NP_067051 C/T T895A minus 4931480 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 19q13.3-q13.4 serine arginine-rich pre-mRNA splicing factor SR-A1 25364 rs3745486 TBC1D17 79735 19 55075448 NM_024682 NP_078958 C/T L99P plus 12468768 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 19q13.33 "TBC1 domain family, member 17" 25365 rs3745489 NUP62 23636 19 55104462 NM_012346 NP_036478 C/T G139S plus 4931499 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.1 107 by freq 19q13.33 nucleoporin 62kDa 25366 rs3745489 NUP62 23636 19 55104462 NM_016553 NP_057637 C/T G139S plus 4931499 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.1 107 by freq 19q13.33 nucleoporin 62kDa 25367 rs3745489 NUP62 23636 19 55104462 NM_153718 NP_714940 C/T G139S plus 4931499 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.1 107 by freq 19q13.33 nucleoporin 62kDa 25368 rs3745489 NUP62 23636 19 55104462 NM_153719 NP_714941 C/T G139S plus 4931499 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.1 107 by freq 19q13.33 nucleoporin 62kDa 25369 rs3745521 SHANK1 50944 19 55862518 NM_016148 NP_057232 A/G V1504A plus 4931531 738 YUSUKE JBIC-ALLELE Japanese (752) 678 0.34 107 by freq 19q13.3 SH3 and multiple ankyrin repeat domains 1 25370 rs3745535 KLK10 5655 19 56212299 NM_002776 NP_002767 A/C S50A plus 24197858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25371 rs3745535 KLK10 5655 19 56212299 NM_002776 NP_002767 A/C S50A plus 24197858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.09 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25372 rs3745535 KLK10 5655 19 56212299 NM_002776 NP_002767 A/C S50A plus 24197858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.42 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25373 rs3745535 KLK10 5655 19 56212299 NM_145888 NP_665895 A/C S50A plus 24197858 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.29 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25374 rs3745535 KLK10 5655 19 56212299 NM_145888 NP_665895 A/C S50A plus 24197858 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.09 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25375 rs3745535 KLK10 5655 19 56212299 NM_145888 NP_665895 A/C S50A plus 24197858 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.42 123 "by cluster,freq" 19q13.3-q13.4 kallikrein 10 25376 rs3745539 KLK11 11012 19 56219853 NM_006853 NP_006844 C/T G17E plus 4931549 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.15 107 by freq 19q13.3-q13.4 kallikrein 11 25377 rs3745539 KLK11 11012 19 56219853 NM_144947 NP_659196 C/T G49E plus 4931549 738 YUSUKE JBIC-ALLELE Japanese (752) 910 0.15 107 by freq 19q13.3-q13.4 kallikrein 11 25378 rs3745581 COL5A3 50509 19 9937990 NM_015719 NP_056534 C/G I1594M plus 4931591 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.07 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 25379 rs3745581 COL5A3 50509 19 9937990 NM_015719 NP_056534 C/G I1594M plus 23981742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 25380 rs3745581 COL5A3 50509 19 9937990 NM_015719 NP_056534 C/G I1594M plus 23981742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 25381 rs3745581 COL5A3 50509 19 9937990 NM_015719 NP_056534 C/G I1594M plus 23981742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 19p13.2 "collagen, type V, alpha 3" 25382 rs3745601 P2RY11 5032 19 10085548 NM_002566 NP_002557 A/G A87T plus 4931611 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.25 120 "by cluster,freq" 19p13.2 "purinergic receptor P2Y, G-protein coupled, 11" 25383 rs3745635 FUT3 2525 19 5795343 NM_000149 NP_000140 A/G G170S minus 4931647 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.23 107 by freq 19p13.3 "fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)" 25384 rs3745663 HSZFP36 55552 19 11693652 XM_375568 XP_375568 C/T R631H plus 4931675 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 107 by freq 19p13.2 ZFP-36 for a zinc finger protein 25385 rs3745674 DNM2 1785 19 10754735 NM_004945 NP_004936 C/T P263L plus 4931686 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.03 123 "HapMap,freq" 19p13.2 dynamin 2 25386 rs3745674 DNM2 1785 19 10754735 NM_004945 NP_004936 C/T P263L plus 4931686 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq" 19p13.2 dynamin 2 25387 rs3745674 DNM2 1785 19 10754735 NM_004945 NP_004936 C/T P263L plus 24191585 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 19p13.2 dynamin 2 25388 rs3745674 DNM2 1785 19 10754735 NM_004945 NP_004936 C/T P263L plus 24191585 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 19p13.2 dynamin 2 25389 rs3745674 DNM2 1785 19 10754735 NM_004945 NP_004936 C/T P263L plus 24191585 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 19p13.2 dynamin 2 25390 rs3745725 KCNJ14 3770 19 53659400 NM_013348 NP_037480 C/T R289C plus 4931738 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.07 107 HapMap 19q13 "potassium inwardly-rectifying channel, subfamily J, member 14" 25391 rs3745725 KCNJ14 3770 19 53659400 NM_013348 NP_037480 C/T R289C plus 4931738 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13 "potassium inwardly-rectifying channel, subfamily J, member 14" 25392 rs3745725 KCNJ14 3770 19 53659400 NM_170720 NP_733838 C/T R289C plus 4931738 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.07 107 HapMap 19q13 "potassium inwardly-rectifying channel, subfamily J, member 14" 25393 rs3745725 KCNJ14 3770 19 53659400 NM_170720 NP_733838 C/T R289C plus 4931738 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13 "potassium inwardly-rectifying channel, subfamily J, member 14" 25394 rs3745746 CABP5 56344 19 53229397 NM_019855 NP_062829 C/T V128A minus 4931766 738 YUSUKE JBIC-ALLELE Japanese (752) 1424 0.16 107 "HapMap,freq" 19q13.33 calcium binding protein 5 25395 rs3745746 CABP5 56344 19 53229397 NM_019855 NP_062829 C/T V128A minus 4931766 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.32 107 "HapMap,freq" 19q13.33 calcium binding protein 5 25396 rs3745751 ELSPBP1 64100 19 53211053 NM_022142 NP_071425 C/G C100W minus 4931771 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.1 107 by freq 19q13.33 epididymal sperm binding protein 1 25397 rs3745764 HKR1 284459 19 42546420 NM_181786 NP_861451 A/G T628I minus 4931784 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.16 123 "HapMap,freq" 19q13.13 GLI-Kruppel family member HKR1 25398 rs3745764 HKR1 284459 19 42546420 NM_181786 NP_861451 A/G T628I minus 4931784 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.26 123 "HapMap,freq" 19q13.13 GLI-Kruppel family member HKR1 25399 rs3745764 HKR1 284459 19 42546420 NM_181786 NP_861451 A/G T628I minus 24575192 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "HapMap,freq" 19q13.13 GLI-Kruppel family member HKR1 25400 rs3745764 HKR1 284459 19 42546420 NM_181786 NP_861451 A/G T628I minus 24575192 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq" 19q13.13 GLI-Kruppel family member HKR1 25401 rs3745764 HKR1 284459 19 42546420 NM_181786 NP_861451 A/G T628I minus 24575192 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq" 19q13.13 GLI-Kruppel family member HKR1 25402 rs3745765 HKR1 284459 19 42546075 NM_181786 NP_861451 A/C S513I minus 4931785 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.35 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 25403 rs3745765 HKR1 284459 19 42546075 NM_181786 NP_861451 A/C S513I minus 23613519 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 25404 rs3745765 HKR1 284459 19 42546075 NM_181786 NP_861451 A/C S513I minus 23613519 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 25405 rs3745765 HKR1 284459 19 42546075 NM_181786 NP_861451 A/C S513I minus 23613519 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q13.13 GLI-Kruppel family member HKR1 25406 rs3745833 GALP 85569 19 61385432 NM_033106 NP_149097 C/G I72M minus 4931853 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.25 123 "by cluster,freq" 19q13.43 galanin-like peptide precursor 25407 rs3745833 GALP 85569 19 61385432 NM_033106 NP_149097 C/G I72M minus 24689155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 19q13.43 galanin-like peptide precursor 25408 rs3745833 GALP 85569 19 61385432 NM_033106 NP_149097 C/G I72M minus 24689155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 19q13.43 galanin-like peptide precursor 25409 rs3745833 GALP 85569 19 61385432 NM_033106 NP_149097 C/G I72M minus 24689155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 19q13.43 galanin-like peptide precursor 25410 rs3745842 ABCA7 10347 19 1006191 NM_019112 NP_061985 C/T R1349Q minus 4931862 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.37 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25411 rs3745842 ABCA7 10347 19 1006191 NM_019112 NP_061985 C/T R1349Q minus 23550976 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25412 rs3745842 ABCA7 10347 19 1006191 NM_019112 NP_061985 C/T R1349Q minus 23550976 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25413 rs3745842 ABCA7 10347 19 1006191 NM_019112 NP_061985 C/T R1349Q minus 23550976 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25414 rs3745842 ABCA7 10347 19 1006191 NM_033308 NP_150651 C/T R1211Q minus 4931862 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.37 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25415 rs3745842 ABCA7 10347 19 1006191 NM_033308 NP_150651 C/T R1211Q minus 23550976 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25416 rs3745842 ABCA7 10347 19 1006191 NM_033308 NP_150651 C/T R1211Q minus 23550976 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25417 rs3745842 ABCA7 10347 19 1006191 NM_033308 NP_150651 C/T R1211Q minus 23550976 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25418 rs3745902 KIR3DL2 3812 19 60069820 NM_006737 NP_006728 C/T T397M plus 4931922 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 107 "HapMap,freq" 19q13.4 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2" 25419 rs3745902 KIR3DL2 3812 19 60069820 NM_006737 NP_006728 C/T T397M plus 4931922 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1466 0.35 107 "HapMap,freq" 19q13.4 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2" 25420 rs3745904 NALP2 55655 19 60185782 NM_017852 NP_060322 C/G E302Q plus 4931924 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 107 HapMap 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 25421 rs3745904 NALP2 55655 19 60185782 NM_017852 NP_060322 C/G E302Q plus 4931924 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 25422 rs3745925 MADCAM1 8174 19 452900 NM_130760 NP_570116 G/T P300H minus 4931945 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.32 107 "HapMap,freq" 19p13.3 mucosal vascular addressin cell adhesion molecule 1 25423 rs3745925 MADCAM1 8174 19 452900 NM_130760 NP_570116 G/T P300H minus 4931945 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 107 "HapMap,freq" 19p13.3 mucosal vascular addressin cell adhesion molecule 1 25424 rs3745945 SIPA1L3 23094 19 43365138 XM_032278 XP_032278 C/G P1377A plus 4931965 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.04 123 by freq 19q13.13 signal-induced proliferation-associated 1 like 3 25425 rs3745945 SIPA1L3 23094 19 43365138 XM_032278 XP_032278 C/G P1377A plus 24683353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 19q13.13 signal-induced proliferation-associated 1 like 3 25426 rs3745945 SIPA1L3 23094 19 43365138 XM_032278 XP_032278 C/G P1377A plus 24683353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19q13.13 signal-induced proliferation-associated 1 like 3 25427 rs3745945 SIPA1L3 23094 19 43365138 XM_032278 XP_032278 C/G P1377A plus 24683353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 19q13.13 signal-induced proliferation-associated 1 like 3 25428 rs3745985 ZBTB7 51341 19 4005702 NM_015898 NP_056982 C/T A177T plus 4932005 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19p13.3 zinc finger and BTB domain containing 7 25429 rs3746013 FCGBP 8857 19 45055766 NM_003890 NP_003881 C/G D4906H plus 4932033 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.45 107 "HapMap,freq" 19q13.1 Fc fragment of IgG binding protein 25430 rs3746013 FCGBP 8857 19 45055766 NM_003890 NP_003881 C/G D4906H plus 4932033 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 107 "HapMap,freq" 19q13.1 Fc fragment of IgG binding protein 25431 rs3746072 EDG6 8698 19 3130884 NM_003775 NP_003766 A/C R365L minus 4932094 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.03 107 HapMap 19p13.3 "endothelial differentiation, G-protein-coupled receptor 6" 25432 rs3746072 EDG6 8698 19 3130884 NM_003775 NP_003766 A/C R365L minus 4932094 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19p13.3 "endothelial differentiation, G-protein-coupled receptor 6" 25433 rs3746101 MKNK2 2872 19 2001823 NM_017572 NP_060042 G/T Q10K plus 4932123 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.2 107 by freq 19p13.3 MAP kinase-interacting serine/threonine kinase 2 25434 rs3746101 MKNK2 2872 19 2001823 NM_199054 NP_951009 G/T Q10K plus 4932123 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.2 107 by freq 19p13.3 MAP kinase-interacting serine/threonine kinase 2 25435 rs3746119 APBA3 9546 19 3705039 NM_004886 NP_004877 A/C K276T minus 4932141 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 by freq 19p13.3 "amyloid beta (A4) precursor protein-binding, family A, member 3 (X11-like 2)" 25436 rs3746204 ABHD9 79852 19 15199370 NM_024794 NP_079070 C/T R321C minus 4932226 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19p13.13 abhydrolase domain containing 9 25437 rs3746223 VN1R1 57191 19 62659358 NM_020633 NP_065684 A/G I103M minus 4932245 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 107 HapMap 19q13.4 vomeronasal 1 receptor 1 25438 rs3746223 VN1R1 57191 19 62659358 NM_020633 NP_065684 A/G I103M minus 4932245 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.4 vomeronasal 1 receptor 1 25439 rs3746319 ZNF224 7767 19 49304071 NM_013398 NP_037530 C/T K640E minus 4932341 738 YUSUKE JBIC-ALLELE Japanese (752) 1278 0.5 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 25440 rs3746319 ZNF224 7767 19 49304071 NM_013398 NP_037530 C/T K640E minus 24113180 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 25441 rs3746319 ZNF224 7767 19 49304071 NM_013398 NP_037530 C/T K640E minus 24113180 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 25442 rs3746319 ZNF224 7767 19 49304071 NM_013398 NP_037530 C/T K640E minus 24113180 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 19q13.2 zinc finger protein 224 25443 rs3746323 ZNF224 7767 19 49303669 NM_013398 NP_037530 C/G H506D minus 4932345 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 HapMap 19q13.2 zinc finger protein 224 25444 rs3746323 ZNF224 7767 19 49303669 NM_013398 NP_037530 C/G H506D minus 4932345 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 107 HapMap 19q13.2 zinc finger protein 224 25445 rs3746405 PPP4R1L 55370 20 56254533 XM_086650 XP_086650 C/T C379R minus 4932427 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.35 123 "HapMap,doubleHit,freq,cluster" 20q13.32 "protein phosphatase 4, regulatory subunit 1-like" 25446 rs3746405 PPP4R1L 55370 20 56254533 XM_086650 XP_086650 C/T C379R minus 8388598 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.44 123 "HapMap,doubleHit,freq,cluster" 20q13.32 "protein phosphatase 4, regulatory subunit 1-like" 25447 rs3746405 PPP4R1L 55370 20 56254533 XM_086650 XP_086650 C/T C379R minus 24456692 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 20q13.32 "protein phosphatase 4, regulatory subunit 1-like" 25448 rs3746405 PPP4R1L 55370 20 56254533 XM_086650 XP_086650 C/T C379R minus 24456692 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 20q13.32 "protein phosphatase 4, regulatory subunit 1-like" 25449 rs3746405 PPP4R1L 55370 20 56254533 XM_086650 XP_086650 C/T C379R minus 24456692 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 20q13.32 "protein phosphatase 4, regulatory subunit 1-like" 25450 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.13 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25451 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25452 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 902 AFFY Caucasian 22 0.18 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25453 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 903 AFFY Asian 12 1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25454 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 904 AFFY CEPH 4 0.5 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25455 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 4932436 905 AFFY PDpanel 40 0.1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25456 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 23785426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25457 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 23785426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25458 rs3746414 ZFP64 55734 20 50202786 NM_018197 NP_060667 A/G S451N minus 23785426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25459 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.13 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25460 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25461 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 902 AFFY Caucasian 22 0.18 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25462 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 903 AFFY Asian 12 1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25463 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 904 AFFY CEPH 4 0.5 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25464 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 4932436 905 AFFY PDpanel 40 0.1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25465 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 23785426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25466 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 23785426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25467 rs3746414 ZFP64 55734 20 50202786 NM_022088 NP_071371 A/G S397N minus 23785426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25468 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.13 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25469 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25470 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 902 AFFY Caucasian 22 0.18 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25471 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 903 AFFY Asian 12 1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25472 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 904 AFFY CEPH 4 0.5 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25473 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 4932436 905 AFFY PDpanel 40 0.1 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25474 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 23785426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25475 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 23785426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25476 rs3746414 ZFP64 55734 20 50202786 NM_199426 NP_955458 A/G S449N minus 23785426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 20q13.13 zinc finger protein 64 homolog (mouse) 25477 rs3746435 MYH7B 57644 20 33050859 XM_371398 XP_371398 C/G K1552N minus 4932457 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.12 114 "by cluster,freq" 20q11.23 "myosin, heavy polypeptide 7B, cardiac muscle, beta" 25478 rs3746500 ZSWIM1 90204 20 43944940 NM_080603 NP_542170 A/G R72Q plus 4932522 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.02 123 "by cluster,freq" 20q13.12 "zinc finger, SWIM domain containing 1" 25479 rs3746500 ZSWIM1 90204 20 43944940 NM_080603 NP_542170 A/G R72Q plus 24083765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 20q13.12 "zinc finger, SWIM domain containing 1" 25480 rs3746500 ZSWIM1 90204 20 43944940 NM_080603 NP_542170 A/G R72Q plus 24083765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 20q13.12 "zinc finger, SWIM domain containing 1" 25481 rs3746500 ZSWIM1 90204 20 43944940 NM_080603 NP_542170 A/G R72Q plus 24083765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 20q13.12 "zinc finger, SWIM domain containing 1" 25482 rs3746619 MC3R 4159 20 54257212 NM_019888 NP_063941 A/C T6K plus 4932641 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.26 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 25483 rs3746619 MC3R 4159 20 54257212 NM_019888 NP_063941 A/C T6K plus 23430170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 25484 rs3746619 MC3R 4159 20 54257212 NM_019888 NP_063941 A/C T6K plus 23430170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.35 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 25485 rs3746619 MC3R 4159 20 54257212 NM_019888 NP_063941 A/C T6K plus 23430170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 25486 rs3746636 SN 6614 20 3621194 NM_023068 NP_075556 G/T S1335Y plus 4932658 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 107 by freq 20p13 sialoadhesin 25487 rs3746638 SN 6614 20 3623333 NM_023068 NP_075556 A/G A974V plus 4932660 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.35 123 "by doubleHit,freq,cluster" 20p13 sialoadhesin 25488 rs3746638 SN 6614 20 3623333 NM_023068 NP_075556 A/G A974V plus 24496983 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 20p13 sialoadhesin 25489 rs3746638 SN 6614 20 3623333 NM_023068 NP_075556 A/G A974V plus 24496983 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 20p13 sialoadhesin 25490 rs3746638 SN 6614 20 3623333 NM_023068 NP_075556 A/G A974V plus 24496983 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 20p13 sialoadhesin 25491 rs3746726 SSTR4 6754 20 22964970 NM_001052 NP_001043 G/T F284V plus 4932748 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 116 "by doubleHit,freq,cluster" 20p11.2 somatostatin receptor 4 25492 rs3746731 C1QR1 22918 20 23013209 NM_012072 NP_036204 A/G P541S plus 24690182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 20p11.22 "complement component 1, q subcomponent, receptor 1" 25493 rs3746731 C1QR1 22918 20 23013209 NM_012072 NP_036204 A/G P541S plus 24690182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 20p11.22 "complement component 1, q subcomponent, receptor 1" 25494 rs3746731 C1QR1 22918 20 23013209 NM_012072 NP_036204 A/G P541S plus 24690182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 "by doubleHit,freq,cluster" 20p11.22 "complement component 1, q subcomponent, receptor 1" 25495 rs3746736 CSTL1 128817 20 23372613 NM_138283 NP_612140 C/T W88R plus 4932758 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.28 123 "by doubleHit,freq,cluster" 20p11.21 cystatin-like 1 25496 rs3746736 CSTL1 128817 20 23372613 NM_138283 NP_612140 C/T W88R plus 24690643 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 20p11.21 cystatin-like 1 25497 rs3746736 CSTL1 128817 20 23372613 NM_138283 NP_612140 C/T W88R plus 24690643 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20p11.21 cystatin-like 1 25498 rs3746736 CSTL1 128817 20 23372613 NM_138283 NP_612140 C/T W88R plus 24690643 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 20p11.21 cystatin-like 1 25499 rs3746737 CSTL1 128817 20 23372638 NM_138283 NP_612140 C/T T96M plus 4932759 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.23 123 "by cluster,freq" 20p11.21 cystatin-like 1 25500 rs3746737 CSTL1 128817 20 23372638 NM_138283 NP_612140 C/T T96M plus 24202155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 20p11.21 cystatin-like 1 25501 rs3746737 CSTL1 128817 20 23372638 NM_138283 NP_612140 C/T T96M plus 24202155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 20p11.21 cystatin-like 1 25502 rs3746737 CSTL1 128817 20 23372638 NM_138283 NP_612140 C/T T96M plus 24202155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 20p11.21 cystatin-like 1 25503 rs3746875 KCNJ15 3772 21 38593141 NM_002243 NP_002234 A/C M30L plus 4932897 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25504 rs3746875 KCNJ15 3772 21 38593141 NM_002243 NP_002234 A/C M30L plus 4932897 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25505 rs3746875 KCNJ15 3772 21 38593141 NM_170736 NP_733932 A/C M30L plus 4932897 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25506 rs3746875 KCNJ15 3772 21 38593141 NM_170736 NP_733932 A/C M30L plus 4932897 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25507 rs3746875 KCNJ15 3772 21 38593141 NM_170737 NP_733933 A/C M30L plus 4932897 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25508 rs3746875 KCNJ15 3772 21 38593141 NM_170737 NP_733933 A/C M30L plus 4932897 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 21q22.2 "potassium inwardly-rectifying channel, subfamily J, member 15" 25509 rs3746887 B3GALT5 10317 21 39954610 NM_006057 NP_006048 C/T M85T plus 4932909 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.37 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25510 rs3746887 B3GALT5 10317 21 39954610 NM_006057 NP_006048 C/T M85T plus 14434152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25511 rs3746887 B3GALT5 10317 21 39954610 NM_006057 NP_006048 C/T M85T plus 23648249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25512 rs3746887 B3GALT5 10317 21 39954610 NM_006057 NP_006048 C/T M85T plus 23648249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25513 rs3746887 B3GALT5 10317 21 39954610 NM_006057 NP_006048 C/T M85T plus 23648249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25514 rs3746887 B3GALT5 10317 21 39954610 NM_033170 NP_149360 C/T M85T plus 4932909 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.37 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25515 rs3746887 B3GALT5 10317 21 39954610 NM_033170 NP_149360 C/T M85T plus 14434152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25516 rs3746887 B3GALT5 10317 21 39954610 NM_033170 NP_149360 C/T M85T plus 23648249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25517 rs3746887 B3GALT5 10317 21 39954610 NM_033170 NP_149360 C/T M85T plus 23648249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25518 rs3746887 B3GALT5 10317 21 39954610 NM_033170 NP_149360 C/T M85T plus 23648249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25519 rs3746887 B3GALT5 10317 21 39954610 NM_033171 NP_149361 C/T M85T plus 4932909 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.37 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25520 rs3746887 B3GALT5 10317 21 39954610 NM_033171 NP_149361 C/T M85T plus 14434152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25521 rs3746887 B3GALT5 10317 21 39954610 NM_033171 NP_149361 C/T M85T plus 23648249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25522 rs3746887 B3GALT5 10317 21 39954610 NM_033171 NP_149361 C/T M85T plus 23648249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25523 rs3746887 B3GALT5 10317 21 39954610 NM_033171 NP_149361 C/T M85T plus 23648249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25524 rs3746887 B3GALT5 10317 21 39954610 NM_033172 NP_149362 C/T M85T plus 4932909 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.37 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25525 rs3746887 B3GALT5 10317 21 39954610 NM_033172 NP_149362 C/T M85T plus 14434152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25526 rs3746887 B3GALT5 10317 21 39954610 NM_033172 NP_149362 C/T M85T plus 23648249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25527 rs3746887 B3GALT5 10317 21 39954610 NM_033172 NP_149362 C/T M85T plus 23648249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25528 rs3746887 B3GALT5 10317 21 39954610 NM_033172 NP_149362 C/T M85T plus 23648249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25529 rs3746887 B3GALT5 10317 21 39954610 NM_033173 NP_149363 C/T M85T plus 4932909 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.37 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25530 rs3746887 B3GALT5 10317 21 39954610 NM_033173 NP_149363 C/T M85T plus 14434152 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25531 rs3746887 B3GALT5 10317 21 39954610 NM_033173 NP_149363 C/T M85T plus 23648249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25532 rs3746887 B3GALT5 10317 21 39954610 NM_033173 NP_149363 C/T M85T plus 23648249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25533 rs3746887 B3GALT5 10317 21 39954610 NM_033173 NP_149363 C/T M85T plus 23648249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5" 25534 rs3746891 RIPK4 54101 21 42034426 NM_020639 NP_065690 C/T M666V plus 4932913 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.11 123 "HapMap,freq,cluster" 21q22.3 ankyrin repeat domain 3 25535 rs3746891 RIPK4 54101 21 42034426 NM_020639 NP_065690 C/T M666V plus 10983985 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 123 "HapMap,freq,cluster" 21q22.3 ankyrin repeat domain 3 25536 rs3746891 RIPK4 54101 21 42034426 NM_020639 NP_065690 C/T M666V plus 24132507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "HapMap,freq,cluster" 21q22.3 ankyrin repeat domain 3 25537 rs3746891 RIPK4 54101 21 42034426 NM_020639 NP_065690 C/T M666V plus 24132507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 21q22.3 ankyrin repeat domain 3 25538 rs3746891 RIPK4 54101 21 42034426 NM_020639 NP_065690 C/T M666V plus 24132507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 21q22.3 ankyrin repeat domain 3 25539 rs3746951 SNF1LK 150094 21 43670444 NM_173354 NP_775490 C/T G15S plus 4932973 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.26 107 by freq 21q22.3 SNF1-like kinase 25540 rs3747052 STK22B 23617 22 17493546 NM_053006 NP_443732 A/G K27R plus 4933074 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.03 107 HapMap 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 25541 rs3747052 STK22B 23617 22 17493546 NM_053006 NP_443732 A/G K27R plus 4933074 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 25542 rs3747073 RTN4R 65078 22 18604435 NM_023004 NP_075380 C/T D259N plus 4933095 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 22q11.21 reticulon 4 receptor 25543 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.2 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25544 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25545 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 901 AFFY AfAm 12 1 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25546 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 902 AFFY Caucasian 24 0.33 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25547 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 903 AFFY Asian 12 0.33 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25548 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 904 AFFY CEPH 6 0.5 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25549 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 4933151 905 AFFY PDpanel 48 0.21 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25550 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 24077242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25551 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 24077242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25552 rs3747129 HPS4 89781 22 25186595 NM_152843 NP_690056 A/G R246X plus 24077242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 22cen-q12.3 Hermansky-Pudlak syndrome 4 25553 rs3747258 CERK 64781 22 45402542 NM_182661 NP_872602 A/G P159S plus 4933280 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.01 107 "HapMap,doubleHit,freq" 22q13.31 ceramide kinase 25554 rs3747258 CERK 64781 22 45402542 NM_182661 NP_872602 A/G P159S plus 4933280 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 107 "HapMap,doubleHit,freq" 22q13.31 ceramide kinase 25555 rs3747517 IFIH1 64135 2 162954331 NM_022168 NP_071451 A/G H843R minus 4933539 738 YUSUKE JBIC-ALLELE Japanese (752) 1454 0.38 123 "HapMap,doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 25556 rs3747517 IFIH1 64135 2 162954331 NM_022168 NP_071451 A/G H843R minus 6120212 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 25557 rs3747517 IFIH1 64135 2 162954331 NM_022168 NP_071451 A/G H843R minus 23232650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "HapMap,doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 25558 rs3747517 IFIH1 64135 2 162954331 NM_022168 NP_071451 A/G H843R minus 23232650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.43 123 "HapMap,doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 25559 rs3747517 IFIH1 64135 2 162954331 NM_022168 NP_071451 A/G H843R minus 23232650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 25560 rs3747532 CER1 9350 9 14712477 NM_005454 NP_005445 C/G A65G plus 4933554 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.06 123 "by doubleHit,freq,cluster" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 25561 rs3747532 CER1 9350 9 14712477 NM_005454 NP_005445 C/G A65G plus 24522596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 25562 rs3747532 CER1 9350 9 14712477 NM_005454 NP_005445 C/G A65G plus 24522596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 25563 rs3747532 CER1 9350 9 14712477 NM_005454 NP_005445 C/G A65G plus 24522596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 25564 rs3747539 FRMPD1 22844 9 37682654 NM_014907 NP_055722 A/C T6P plus 4933561 738 YUSUKE JBIC-ALLELE Japanese (752) 744 0.08 123 "HapMap,freq" 9p13.1 FERM and PDZ domain containing 1 25565 rs3747539 FRMPD1 22844 9 37682654 NM_014907 NP_055722 A/C T6P plus 4933561 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq" 9p13.1 FERM and PDZ domain containing 1 25566 rs3747539 FRMPD1 22844 9 37682654 NM_014907 NP_055722 A/C T6P plus 24552125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "HapMap,freq" 9p13.1 FERM and PDZ domain containing 1 25567 rs3747539 FRMPD1 22844 9 37682654 NM_014907 NP_055722 A/C T6P plus 24552125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq" 9p13.1 FERM and PDZ domain containing 1 25568 rs3747539 FRMPD1 22844 9 37682654 NM_014907 NP_055722 A/C T6P plus 24552125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq" 9p13.1 FERM and PDZ domain containing 1 25569 rs3747582 HSCARG 57407 16 4451927 NM_020677 NP_065728 A/G P252L plus 4933604 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.21 123 "HapMap,freq,cluster" 16p13.3 HSCARG protein 25570 rs3747582 HSCARG 57407 16 4451927 NM_020677 NP_065728 A/G P252L plus 4933604 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 16p13.3 HSCARG protein 25571 rs3747582 HSCARG 57407 16 4451927 NM_020677 NP_065728 A/G P252L plus 23968549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 16p13.3 HSCARG protein 25572 rs3747582 HSCARG 57407 16 4451927 NM_020677 NP_065728 A/G P252L plus 23968549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 16p13.3 HSCARG protein 25573 rs3747582 HSCARG 57407 16 4451927 NM_020677 NP_065728 A/G P252L plus 23968549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 16p13.3 HSCARG protein 25574 rs3747631 LRRN5 10446 1 201319226 NM_006338 NP_006329 C/G L518V minus 4933653 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.4 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25575 rs3747631 LRRN5 10446 1 201319226 NM_006338 NP_006329 C/G L518V minus 24159116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25576 rs3747631 LRRN5 10446 1 201319226 NM_006338 NP_006329 C/G L518V minus 24159116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25577 rs3747631 LRRN5 10446 1 201319226 NM_006338 NP_006329 C/G L518V minus 24159116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25578 rs3747631 LRRN5 10446 1 201319226 NM_201630 NP_963924 C/G L518V minus 4933653 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.4 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25579 rs3747631 LRRN5 10446 1 201319226 NM_201630 NP_963924 C/G L518V minus 24159116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25580 rs3747631 LRRN5 10446 1 201319226 NM_201630 NP_963924 C/G L518V minus 24159116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25581 rs3747631 LRRN5 10446 1 201319226 NM_201630 NP_963924 C/G L518V minus 24159116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by cluster,freq" 1q32.1 leucine rich repeat neuronal 5 25582 rs3747738 ZDHHC11 79844 5 872671 NM_024786 NP_079062 A/G R372H minus 4933760 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.08 123 "HapMap,freq" 5p15.33 "zinc finger, DHHC domain containing 11" 25583 rs3747738 ZDHHC11 79844 5 872671 NM_024786 NP_079062 A/G R372H minus 4933760 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq" 5p15.33 "zinc finger, DHHC domain containing 11" 25584 rs3747738 ZDHHC11 79844 5 872671 NM_024786 NP_079062 A/G R372H minus 24182153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 5p15.33 "zinc finger, DHHC domain containing 11" 25585 rs3747738 ZDHHC11 79844 5 872671 NM_024786 NP_079062 A/G R372H minus 24182153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5p15.33 "zinc finger, DHHC domain containing 11" 25586 rs3747738 ZDHHC11 79844 5 872671 NM_024786 NP_079062 A/G R372H minus 24182153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,freq" 5p15.33 "zinc finger, DHHC domain containing 11" 25587 rs3747742 TREML2 79865 6 41270496 NM_024807 NP_079083 C/T S203G plus 4933764 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.32 123 "by doubleHit,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells-like 2 25588 rs3747742 TREML2 79865 6 41270496 NM_024807 NP_079083 C/T S203G plus 23994520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells-like 2 25589 rs3747742 TREML2 79865 6 41270496 NM_024807 NP_079083 C/T S203G plus 23994520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells-like 2 25590 rs3747742 TREML2 79865 6 41270496 NM_024807 NP_079083 C/T S203G plus 23994520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.1 triggering receptor expressed on myeloid cells-like 2 25591 rs3747747 FRS3 10817 6 41847152 NM_006653 NP_006644 C/T P221L minus 4933769 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 107 by freq 6p21.1 fibroblast growth factor receptor substrate 3 25592 rs3747787 AIM1 202 6 107074471 XM_166300 XP_166300 C/T C1114R plus 4933809 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.11 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 25593 rs3747787 AIM1 202 6 107074471 XM_166300 XP_166300 C/T C1114R plus 24360629 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 25594 rs3747787 AIM1 202 6 107074471 XM_166300 XP_166300 C/T C1114R plus 24360629 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 25595 rs3747787 AIM1 202 6 107074471 XM_166300 XP_166300 C/T C1114R plus 24360629 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q21 absent in melanoma 1 25596 rs3747834 TRIM32 22954 9 116540345 NM_012210 NP_036342 C/G T257R plus 4933856 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 107 HapMap 9q33.2 tripartite motif-containing 32 25597 rs3747834 TRIM32 22954 9 116540345 NM_012210 NP_036342 C/G T257R plus 4933856 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q33.2 tripartite motif-containing 32 25598 rs3747835 TRIM32 22954 9 116540797 NM_012210 NP_036342 C/T R408C plus 4933857 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 9q33.2 tripartite motif-containing 32 25599 rs3747835 TRIM32 22954 9 116540797 NM_012210 NP_036342 C/T R408C plus 4933857 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 752 0 107 HapMap 9q33.2 tripartite motif-containing 32 25600 rs3747849 GSN 2934 9 121144778 NM_000177 NP_000168 C/T A129T minus 4933871 738 YUSUKE JBIC-ALLELE Japanese (752) 1278 0.14 120 "HapMap,cluster" 9q33 "gelsolin (amyloidosis, Finnish type)" 25601 rs3747849 GSN 2934 9 121144778 NM_000177 NP_000168 C/T A129T minus 4933871 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 9q33 "gelsolin (amyloidosis, Finnish type)" 25602 rs3747849 GSN 2934 9 121144778 NM_198252 NP_937895 C/T A78T minus 4933871 738 YUSUKE JBIC-ALLELE Japanese (752) 1278 0.14 120 "HapMap,cluster" 9q33 "gelsolin (amyloidosis, Finnish type)" 25603 rs3747849 GSN 2934 9 121144778 NM_198252 NP_937895 C/T A78T minus 4933871 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 9q33 "gelsolin (amyloidosis, Finnish type)" 25604 rs3747853 ARHGAP22 58504 10 49328344 NM_021226 NP_067049 A/G R612C plus 4933875 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.02 107 by freq 10q11.23 Rho GTPase activating protein 22 25605 rs3747879 PAOX 196743 10 135086561 NM_152911 NP_690875 A/G R362Q plus 4933901 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.06 107 by freq 10q26.3 polyamine oxidase (exo-N4-amino) 25606 rs3747879 PAOX 196743 10 135086561 NM_207128 NP_997011 A/G R362Q plus 4933901 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.06 107 by freq 10q26.3 polyamine oxidase (exo-N4-amino) 25607 rs3747954 IER5 51278 1 177790197 NM_016545 NP_057629 C/T V168I minus 4933976 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1038 0.04 107 by freq 1q25.1 immediate early response 5 25608 rs3748022 IKBKE 9641 1 203057860 XM_375834 XP_375834 C/T P713L plus 4934044 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.18 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 25609 rs3748022 IKBKE 9641 1 203057860 XM_375834 XP_375834 C/T P713L plus 24642261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 25610 rs3748022 IKBKE 9641 1 203057860 XM_375834 XP_375834 C/T P713L plus 24642261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 25611 rs3748022 IKBKE 9641 1 203057860 XM_375834 XP_375834 C/T P713L plus 24642261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 25612 rs3748034 HGFAC 3083 4 3483060 NM_001528 NP_001519 A/C A218S minus 23895565 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4p16 HGF activator 25613 rs3748034 HGFAC 3083 4 3483060 NM_001528 NP_001519 A/C A218S minus 23895565 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 4p16 HGF activator 25614 rs3748034 HGFAC 3083 4 3483060 NM_001528 NP_001519 A/C A218S minus 23895565 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by cluster,freq" 4p16 HGF activator 25615 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.36 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25616 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25617 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 901 AFFY AfAm 12 0.25 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25618 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 902 AFFY Caucasian 24 0.46 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25619 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 903 AFFY Asian 6 0.5 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25620 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 904 AFFY CEPH 12 0.08 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25621 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 4934064 905 AFFY PDpanel 48 0.38 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25622 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 24330364 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25623 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 24330364 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25624 rs3748041 BDP1 55814 5 70844925 NM_018429 NP_060899 A/G K1469E plus 24330364 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25625 rs3748042 BDP1 55814 5 70787537 NM_018429 NP_060899 A/G N26S plus 4934065 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.02 107 by freq 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25626 rs3748043 BDP1 55814 5 70787574 NM_018429 NP_060899 G/T D38E plus 4934066 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "by cluster,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25627 rs3748043 BDP1 55814 5 70787574 NM_018429 NP_060899 G/T D38E plus 23283148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25628 rs3748043 BDP1 55814 5 70787574 NM_018429 NP_060899 G/T D38E plus 23283148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25629 rs3748043 BDP1 55814 5 70787574 NM_018429 NP_060899 G/T D38E plus 23283148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 25630 rs3748085 ANKRD6 22881 6 90372508 XM_376519 XP_376519 C/T I128V minus 4934108 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.05 123 "by doubleHit,freq,cluster" 6q14.2-q16.1 ankyrin repeat domain 6 25631 rs3748085 ANKRD6 22881 6 90372508 XM_376519 XP_376519 C/T I128V minus 23458265 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q14.2-q16.1 ankyrin repeat domain 6 25632 rs3748085 ANKRD6 22881 6 90372508 XM_376519 XP_376519 C/T I128V minus 23458265 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 6q14.2-q16.1 ankyrin repeat domain 6 25633 rs3748085 ANKRD6 22881 6 90372508 XM_376519 XP_376519 C/T I128V minus 23458265 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 6q14.2-q16.1 ankyrin repeat domain 6 25634 rs3748140 PPP1R3B 79660 8 9036429 NM_024607 NP_078883 A/G G48E minus 4934163 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.09 123 "by cluster,freq" 8p23.1 "protein phosphatase 1, regulatory (inhibitor) subunit 3B" 25635 rs3748140 PPP1R3B 79660 8 9036429 NM_024607 NP_078883 A/G G48E minus 23953336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p23.1 "protein phosphatase 1, regulatory (inhibitor) subunit 3B" 25636 rs3748140 PPP1R3B 79660 8 9036429 NM_024607 NP_078883 A/G G48E minus 23953336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 8p23.1 "protein phosphatase 1, regulatory (inhibitor) subunit 3B" 25637 rs3748140 PPP1R3B 79660 8 9036429 NM_024607 NP_078883 A/G G48E minus 23953336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 8p23.1 "protein phosphatase 1, regulatory (inhibitor) subunit 3B" 25638 rs3748169 TNC 3371 9 114919902 NM_002160 NP_002151 C/G D850H minus 4934192 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 9q33 tenascin C (hexabrachion) 25639 rs3748170 TNC 3371 9 114919899 NM_002160 NP_002151 C/G L851V minus 4934193 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 9q33 tenascin C (hexabrachion) 25640 rs3748176 AKNA 80709 9 114204285 NM_030767 NP_110394 C/T P624L minus 4934199 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.42 121 "by doubleHit,freq,cluster" 9q32 AT-hook transcription factor 25641 rs3748178 AKNA 80709 9 114189600 NM_030767 NP_110394 A/G R1119Q minus 4934201 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.03 123 "by cluster,freq" 9q32 AT-hook transcription factor 25642 rs3748178 AKNA 80709 9 114189600 NM_030767 NP_110394 A/G R1119Q minus 24511196 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 9q32 AT-hook transcription factor 25643 rs3748178 AKNA 80709 9 114189600 NM_030767 NP_110394 A/G R1119Q minus 24511196 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 9q32 AT-hook transcription factor 25644 rs3748178 AKNA 80709 9 114189600 NM_030767 NP_110394 A/G R1119Q minus 24511196 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 9q32 AT-hook transcription factor 25645 rs3748199 MRPS2 51116 9 135621914 NM_016034 NP_057118 A/G H294R plus 4934222 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.04 123 "HapMap,freq,cluster" 9q34 mitochondrial ribosomal protein S2 25646 rs3748199 MRPS2 51116 9 135621914 NM_016034 NP_057118 A/G H294R plus 4934222 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 9q34 mitochondrial ribosomal protein S2 25647 rs3748199 MRPS2 51116 9 135621914 NM_016034 NP_057118 A/G H294R plus 23599460 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 9q34 mitochondrial ribosomal protein S2 25648 rs3748199 MRPS2 51116 9 135621914 NM_016034 NP_057118 A/G H294R plus 23599460 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,freq,cluster" 9q34 mitochondrial ribosomal protein S2 25649 rs3748199 MRPS2 51116 9 135621914 NM_016034 NP_057118 A/G H294R plus 23599460 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 9q34 mitochondrial ribosomal protein S2 25650 rs3748210 PAEP 5047 9 135682100 NM_002571 NP_002562 A/C Q108K plus 4934233 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.44 107 "by doubleHit,freq" 9q34 "progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uterine protein)" 25651 rs3748222 ARHGAP21 57584 10 24948692 NM_020824 NP_065875 C/T N712S plus 4934245 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.31 120 "by doubleHit,freq,cluster" 10p12.31 Rho GTPase activating protein 21 25652 rs3748229 PIK3AP1 118788 10 98459497 NM_152309 NP_689522 G/T A83S minus 4934252 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.22 120 "by cluster,freq" 10q24.2 phosphoinositide-3-kinase adaptor protein 1 25653 rs3748233 PIK3AP1 118788 10 98376473 NM_152309 NP_689522 A/G E551K minus 4934256 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.06 107 by freq 10q24.2 phosphoinositide-3-kinase adaptor protein 1 25654 rs3748338 RNASE4 6038 14 20237416 NM_002937 NP_002928 A/T T16S plus 24226655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25655 rs3748338 RNASE4 6038 14 20237416 NM_002937 NP_002928 A/T T16S plus 24226655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25656 rs3748338 RNASE4 6038 14 20237416 NM_002937 NP_002928 A/T T16S plus 24226655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25657 rs3748338 RNASE4 6038 14 20237416 NM_194430 NP_919411 A/T T16S plus 24226655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25658 rs3748338 RNASE4 6038 14 20237416 NM_194430 NP_919411 A/T T16S plus 24226655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25659 rs3748338 RNASE4 6038 14 20237416 NM_194430 NP_919411 A/T T16S plus 24226655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25660 rs3748338 RNASE4 6038 14 20237416 NM_194431 NP_919412 A/T T16S plus 24226655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25661 rs3748338 RNASE4 6038 14 20237416 NM_194431 NP_919412 A/T T16S plus 24226655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25662 rs3748338 RNASE4 6038 14 20237416 NM_194431 NP_919412 A/T T16S plus 24226655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 14q11.1 "ribonuclease, RNase A family, 4" 25663 rs3748360 RPGRIP1 57096 14 20862656 NM_020366 NP_065099 C/T S601L plus 4934383 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 by freq 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25664 rs3748361 RPGRIP1 57096 14 20866624 NM_020366 NP_065099 C/G E1033Q plus 4934384 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.36 123 "HapMap,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25665 rs3748361 RPGRIP1 57096 14 20866624 NM_020366 NP_065099 C/G E1033Q plus 4934384 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25666 rs3748361 RPGRIP1 57096 14 20866624 NM_020366 NP_065099 C/G E1033Q plus 24216698 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25667 rs3748361 RPGRIP1 57096 14 20866624 NM_020366 NP_065099 C/G E1033Q plus 24216698 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25668 rs3748361 RPGRIP1 57096 14 20866624 NM_020366 NP_065099 C/G E1033Q plus 24216698 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 25669 rs3748400 ZCCHC14 23174 16 86003340 NM_015144 NP_055959 C/T V693M plus 4934423 738 YUSUKE JBIC-ALLELE Japanese (752) 1096 0.31 121 "HapMap,doubleHit,freq,cluster" 16q24.2 BDG-29 proten 25670 rs3748400 ZCCHC14 23174 16 86003340 NM_015144 NP_055959 C/T V693M plus 10820982 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.22 121 "HapMap,doubleHit,freq,cluster" 16q24.2 BDG-29 proten 25671 rs3748415 APCDD1 147495 18 10461732 NM_153000 NP_694545 C/T V150I minus 4934438 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.12 107 by freq 18p11.21 adenomatosis polyposis coli down-regulated 1 25672 rs3748428 FAM38B 63895 18 10671711 NM_022068 NP_071351 A/G V255I minus 4934451 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.27 123 by freq 18p11.21 "family with sequence similarity 38, member B" 25673 rs3748428 FAM38B 63895 18 10671711 NM_022068 NP_071351 A/G V255I minus 24459680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 18p11.21 "family with sequence similarity 38, member B" 25674 rs3748428 FAM38B 63895 18 10671711 NM_022068 NP_071351 A/G V255I minus 24459680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 18p11.21 "family with sequence similarity 38, member B" 25675 rs3748428 FAM38B 63895 18 10671711 NM_022068 NP_071351 A/G V255I minus 24459680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 18p11.21 "family with sequence similarity 38, member B" 25676 rs3748433 CEP2 11190 20 33553933 NM_007186 NP_009117 C/T R1441Q minus 4934456 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.11 123 "by doubleHit,freq,cluster" 20q11.22-q12 centrosomal protein 2 25677 rs3748433 CEP2 11190 20 33553933 NM_007186 NP_009117 C/T R1441Q minus 24079477 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 20q11.22-q12 centrosomal protein 2 25678 rs3748433 CEP2 11190 20 33553933 NM_007186 NP_009117 C/T R1441Q minus 24079477 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20q11.22-q12 centrosomal protein 2 25679 rs3748433 CEP2 11190 20 33553933 NM_007186 NP_009117 C/T R1441Q minus 24079477 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.22-q12 centrosomal protein 2 25680 rs3748729 KCNA10 3744 1 110772679 NM_005549 NP_005540 C/T S258N plus 4934752 738 YUSUKE JBIC-ALLELE Japanese (752) 730 0.01 107 by freq 1p13.1 "potassium voltage-gated channel, shaker-related subfamily, member 10" 25681 rs3748735 PLXNA2 5362 1 204778864 NM_025179 NP_079455 C/T A267T plus 4934758 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.13 123 "by cluster,freq" 1q32.2 plexin A2 25682 rs3748735 PLXNA2 5362 1 204778864 NM_025179 NP_079455 C/T A267T plus 23845546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 1q32.2 plexin A2 25683 rs3748735 PLXNA2 5362 1 204778864 NM_025179 NP_079455 C/T A267T plus 23845546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 1q32.2 plexin A2 25684 rs3748735 PLXNA2 5362 1 204778864 NM_025179 NP_079455 C/T A267T plus 23845546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 1q32.2 plexin A2 25685 rs3748796 PTPRF 5792 1 43726135 NM_002840 NP_002831 A/G Y440C plus 4934819 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.02 107 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 25686 rs3748796 PTPRF 5792 1 43726135 NM_130440 NP_569707 A/G Y440C plus 4934819 738 YUSUKE JBIC-ALLELE Japanese (752) 1446 0.02 107 by freq 1p34 "protein tyrosine phosphatase, receptor type, F" 25687 rs3748800 PTPRF 5792 1 43727236 NM_002840 NP_002831 A/G D552N plus 4934823 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.03 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25688 rs3748800 PTPRF 5792 1 43727236 NM_002840 NP_002831 A/G D552N plus 23839230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25689 rs3748800 PTPRF 5792 1 43727236 NM_002840 NP_002831 A/G D552N plus 23839230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25690 rs3748800 PTPRF 5792 1 43727236 NM_002840 NP_002831 A/G D552N plus 23839230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25691 rs3748800 PTPRF 5792 1 43727236 NM_130440 NP_569707 A/G D552N plus 4934823 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.03 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25692 rs3748800 PTPRF 5792 1 43727236 NM_130440 NP_569707 A/G D552N plus 23839230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25693 rs3748800 PTPRF 5792 1 43727236 NM_130440 NP_569707 A/G D552N plus 23839230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25694 rs3748800 PTPRF 5792 1 43727236 NM_130440 NP_569707 A/G D552N plus 23839230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p34 "protein tyrosine phosphatase, receptor type, F" 25695 rs3748811 FN3KRP 79672 17 78270099 NM_024619 NP_078895 C/T A57V plus 4934834 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.03 107 HapMap 17q25.3 fructosamine-3-kinase-related protein 25696 rs3748811 FN3KRP 79672 17 78270099 NM_024619 NP_078895 C/T A57V plus 4934834 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17q25.3 fructosamine-3-kinase-related protein 25697 rs3748816 MMEL2 79258 1 2558908 NM_033467 NP_258428 C/T M509T minus 4934839 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.49 123 "HapMap,doubleHit,freq,cluster" 1p36 membrane metallo-endopeptidase-like 2 25698 rs3748816 MMEL2 79258 1 2558908 NM_033467 NP_258428 C/T M509T minus 19854772 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 1p36 membrane metallo-endopeptidase-like 2 25699 rs3748816 MMEL2 79258 1 2558908 NM_033467 NP_258428 C/T M509T minus 23837896 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 1p36 membrane metallo-endopeptidase-like 2 25700 rs3748816 MMEL2 79258 1 2558908 NM_033467 NP_258428 C/T M509T minus 23837896 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 1p36 membrane metallo-endopeptidase-like 2 25701 rs3748816 MMEL2 79258 1 2558908 NM_033467 NP_258428 C/T M509T minus 23837896 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 1p36 membrane metallo-endopeptidase-like 2 25702 rs3748867 LRP1B 53353 2 140947690 NM_018557 NP_061027 C/G R3828P plus 4934890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 25703 rs3748932 CHST10 9486 2 100468524 NM_004854 NP_004845 A/G D258N minus 4934955 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1502 0 107 by freq 2q12.1 carbohydrate sulfotransferase 10 25704 rs3749003 CMYA3 129446 2 167932858 XM_496606 XP_496606 A/G Y3202C plus 4935026 738 YUSUKE JBIC-ALLELE Japanese (752) 1296 0.12 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 25705 rs3749003 CMYA3 129446 2 167932858 XM_496606 XP_496606 A/G Y3202C plus 23863897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 25706 rs3749003 CMYA3 129446 2 167932858 XM_496606 XP_496606 A/G Y3202C plus 23863897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 25707 rs3749003 CMYA3 129446 2 167932858 XM_496606 XP_496606 A/G Y3202C plus 23863897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 25708 rs3749029 SCN1A 6323 2 166673521 NM_006920 NP_008851 A/G R1913H minus 4935052 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q24.3 "sodium channel, voltage-gated, type I, alpha" 25709 rs3749036 SP5 389058 2 171398447 XM_371581 XP_371581 C/T A60T minus 4935059 738 YUSUKE JBIC-ALLELE Japanese (752) 1436 0.47 107 by freq 2q31.1 Sp5 transcription factor 25710 rs3749073 GPR55 9290 2 231600599 NM_005683 NP_005674 A/C G195V plus 4935096 738 YUSUKE JBIC-ALLELE Japanese (752) 1430 0.19 123 "by cluster,freq" 2q37 G protein-coupled receptor 55 25711 rs3749073 GPR55 9290 2 231600599 NM_005683 NP_005674 A/C G195V plus 23188732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2q37 G protein-coupled receptor 55 25712 rs3749073 GPR55 9290 2 231600599 NM_005683 NP_005674 A/C G195V plus 23188732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by cluster,freq" 2q37 G protein-coupled receptor 55 25713 rs3749073 GPR55 9290 2 231600599 NM_005683 NP_005674 A/C G195V plus 23188732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.1 123 "by cluster,freq" 2q37 G protein-coupled receptor 55 25714 rs3749081 RW1 23505 2 97841509 XM_371542 XP_371542 C/G P1443R plus 4935104 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.01 107 HapMap 2q11.2 RW1 protein 25715 rs3749081 RW1 23505 2 97841509 XM_371542 XP_371542 C/G P1443R plus 4935104 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q11.2 RW1 protein 25716 rs3749130 ARHGAP25 9938 2 68946166 XM_376060 XP_376060 A/G R186W minus 4935153 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.05 107 by freq 2p13.3 Rho GTPase activating protein 25 25717 rs3749131 ARHGAP25 9938 2 68964817 XM_376060 XP_376060 A/G N587S plus 4935154 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 HapMap 2p13.3 Rho GTPase activating protein 25 25718 rs3749131 ARHGAP25 9938 2 68964817 XM_376060 XP_376060 A/G N587S plus 4935154 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p13.3 Rho GTPase activating protein 25 25719 rs3749171 GPR35 2859 2 241289682 NM_005301 NP_005292 C/T T108M plus 4935194 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.06 120 "by cluster,freq" 2q37.3 G protein-coupled receptor 35 25720 rs3749191 CDCP1 64866 3 45109826 NM_022842 NP_073753 C/T Q525R plus 23338673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 3p21.32 CUB domain-containing protein 1 25721 rs3749191 CDCP1 64866 3 45109826 NM_022842 NP_073753 C/T Q525R plus 23338673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 3p21.32 CUB domain-containing protein 1 25722 rs3749191 CDCP1 64866 3 45109826 NM_022842 NP_073753 C/T Q525R plus 23338673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 3p21.32 CUB domain-containing protein 1 25723 rs3749195 TGM4 7047 3 44923483 NM_003241 NP_003232 A/G R372C minus 4935218 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.18 123 "HapMap,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 25724 rs3749195 TGM4 7047 3 44923483 NM_003241 NP_003232 A/G R372C minus 14238026 885 TSC-CSHL HapMap-CEPH-30-trios 102 0.49 123 "HapMap,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 25725 rs3749195 TGM4 7047 3 44923483 NM_003241 NP_003232 A/G R372C minus 24370786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 25726 rs3749195 TGM4 7047 3 44923483 NM_003241 NP_003232 A/G R372C minus 24370786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 25727 rs3749195 TGM4 7047 3 44923483 NM_003241 NP_003232 A/G R372C minus 24370786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 3p22-p21.33 transglutaminase 4 (prostate) 25728 rs3749298 PHLDB2 90102 3 113155515 NM_145753 NP_665696 C/T P898S plus 4935321 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.22 123 "by cluster,freq" 3q13.13 "pleckstrin homology-like domain, family B, member 2" 25729 rs3749298 PHLDB2 90102 3 113155515 NM_145753 NP_665696 C/T P898S plus 23928742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by cluster,freq" 3q13.13 "pleckstrin homology-like domain, family B, member 2" 25730 rs3749298 PHLDB2 90102 3 113155515 NM_145753 NP_665696 C/T P898S plus 23928742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q13.13 "pleckstrin homology-like domain, family B, member 2" 25731 rs3749298 PHLDB2 90102 3 113155515 NM_145753 NP_665696 C/T P898S plus 23928742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 3q13.13 "pleckstrin homology-like domain, family B, member 2" 25732 rs3749323 ZBTB11 27107 3 102878319 NM_014415 NP_055230 A/G G44S minus 4935346 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.05 107 by freq 3q12.3 zinc finger and BTB domain containing 11 25733 rs3749383 ITPR1 3708 3 4713837 NM_002222 NP_002213 A/G I1406V plus 4935406 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.03 123 "by cluster,freq" 3p26-p25 "inositol 1,4,5-triphosphate receptor, type 1" 25734 rs3749383 ITPR1 3708 3 4713837 NM_002222 NP_002213 A/G I1406V plus 23883111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p26-p25 "inositol 1,4,5-triphosphate receptor, type 1" 25735 rs3749383 ITPR1 3708 3 4713837 NM_002222 NP_002213 A/G I1406V plus 23883111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 3p26-p25 "inositol 1,4,5-triphosphate receptor, type 1" 25736 rs3749383 ITPR1 3708 3 4713837 NM_002222 NP_002213 A/G I1406V plus 23883111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 3p26-p25 "inositol 1,4,5-triphosphate receptor, type 1" 25737 rs3749574 LRBA 987 4 151564732 NM_006726 NP_006717 C/T A2704T plus 24662943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 25738 rs3749574 LRBA 987 4 151564732 NM_006726 NP_006717 C/T A2704T plus 24662943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 25739 rs3749574 LRBA 987 4 151564732 NM_006726 NP_006717 C/T A2704T plus 24662943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 4q31.23 "LPS-responsive vesicle trafficking, beach and anchor containing" 25740 rs3749591 USP53 54532 4 120571633 XM_052597 XP_052597 G/T S961R plus 4935615 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.34 123 "by cluster,freq" 4q27 ubiquitin specific protease 53 25741 rs3749591 USP53 54532 4 120571633 XM_052597 XP_052597 G/T S961R plus 24664958 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by cluster,freq" 4q27 ubiquitin specific protease 53 25742 rs3749591 USP53 54532 4 120571633 XM_052597 XP_052597 G/T S961R plus 24664958 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 4q27 ubiquitin specific protease 53 25743 rs3749591 USP53 54532 4 120571633 XM_052597 XP_052597 G/T S961R plus 24664958 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by cluster,freq" 4q27 ubiquitin specific protease 53 25744 rs3749598 FSTL5 56884 4 162664917 NM_020116 NP_064501 G/T D711Y minus 4935622 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.07 123 by freq 4q32.3 follistatin-like 5 25745 rs3749598 FSTL5 56884 4 162664917 NM_020116 NP_064501 G/T D711Y minus 24337106 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 4q32.3 follistatin-like 5 25746 rs3749598 FSTL5 56884 4 162664917 NM_020116 NP_064501 G/T D711Y minus 24337106 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4q32.3 follistatin-like 5 25747 rs3749598 FSTL5 56884 4 162664917 NM_020116 NP_064501 G/T D711Y minus 24337106 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 4q32.3 follistatin-like 5 25748 rs3749671 MRPL22 29093 5 154326489 NM_014180 NP_054899 C/T G154S minus 4935695 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.1 123 "HapMap,freq" 5q33.1-q33.3 mitochondrial ribosomal protein L22 25749 rs3749671 MRPL22 29093 5 154326489 NM_014180 NP_054899 C/T G154S minus 4935695 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq" 5q33.1-q33.3 mitochondrial ribosomal protein L22 25750 rs3749671 MRPL22 29093 5 154326489 NM_014180 NP_054899 C/T G154S minus 24472882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 5q33.1-q33.3 mitochondrial ribosomal protein L22 25751 rs3749671 MRPL22 29093 5 154326489 NM_014180 NP_054899 C/T G154S minus 24472882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 5q33.1-q33.3 mitochondrial ribosomal protein L22 25752 rs3749671 MRPL22 29093 5 154326489 NM_014180 NP_054899 C/T G154S minus 24472882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq" 5q33.1-q33.3 mitochondrial ribosomal protein L22 25753 rs3749728 DOK3 79930 5 176869425 NM_024872 NP_079148 C/G R12P minus 4935754 738 YUSUKE JBIC-ALLELE Japanese (752) 1106 0.19 107 by freq 5q35.3 Dok-like protein 25754 rs3749737 OSMR 9180 5 38969169 NM_003999 NP_003990 C/T P936S plus 4935763 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.05 107 by freq 5p13.2 oncostatin M receptor 25755 rs3749745 TRIM36 55521 5 114490113 NM_018700 NP_061170 C/G Q725E minus 4935771 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q23.1 tripartite motif-containing 36 25756 rs3749760 FCHSD1 89848 5 141006366 NM_033449 NP_258260 A/C N344K minus 4935786 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.02 107 by freq 5q31.3 FCH and double SH3 domains 1 25757 rs3749767 PCDHGB6 56100 5 140770117 NM_018926 NP_061749 C/T A722T minus 4935793 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.23 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25758 rs3749767 PCDHGB6 56100 5 140770117 NM_018926 NP_061749 C/T A722T minus 23675274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25759 rs3749767 PCDHGB6 56100 5 140770117 NM_018926 NP_061749 C/T A722T minus 23675274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25760 rs3749767 PCDHGB6 56100 5 140770117 NM_018926 NP_061749 C/T A722T minus 23675274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25761 rs3749767 PCDHGB6 56100 5 140770117 NM_032100 NP_115271 C/T A722T minus 4935793 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.23 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25762 rs3749767 PCDHGB6 56100 5 140770117 NM_032100 NP_115271 C/T A722T minus 23675274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25763 rs3749767 PCDHGB6 56100 5 140770117 NM_032100 NP_115271 C/T A722T minus 23675274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25764 rs3749767 PCDHGB6 56100 5 140770117 NM_032100 NP_115271 C/T A722T minus 23675274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 6" 25765 rs3749768 PCDHGB6 56100 5 140770003 NM_018926 NP_061749 A/G P684S minus 4935794 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.03 107 "HapMap,freq" 5q31 "protocadherin gamma subfamily B, 6" 25766 rs3749768 PCDHGB6 56100 5 140770003 NM_018926 NP_061749 A/G P684S minus 4935794 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 107 "HapMap,freq" 5q31 "protocadherin gamma subfamily B, 6" 25767 rs3749768 PCDHGB6 56100 5 140770003 NM_032100 NP_115271 A/G P684S minus 4935794 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.03 107 "HapMap,freq" 5q31 "protocadherin gamma subfamily B, 6" 25768 rs3749768 PCDHGB6 56100 5 140770003 NM_032100 NP_115271 A/G P684S minus 4935794 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 107 "HapMap,freq" 5q31 "protocadherin gamma subfamily B, 6" 25769 rs3749779 SLC25A2 83884 5 140663075 NM_031947 NP_114153 G/T V181G minus 4935805 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.08 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25770 rs3749779 SLC25A2 83884 5 140663075 NM_031947 NP_114153 G/T V181G minus 4935805 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25771 rs3749779 SLC25A2 83884 5 140663075 NM_031947 NP_114153 G/T V181G minus 24182078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25772 rs3749779 SLC25A2 83884 5 140663075 NM_031947 NP_114153 G/T V181G minus 24182078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25773 rs3749779 SLC25A2 83884 5 140663075 NM_031947 NP_114153 G/T V181G minus 24182078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25774 rs3749780 SLC25A2 83884 5 140662941 NM_031947 NP_114153 A/G V226I minus 4935806 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25775 rs3749780 SLC25A2 83884 5 140662941 NM_031947 NP_114153 A/G V226I minus 4935806 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25776 rs3749780 SLC25A2 83884 5 140662941 NM_031947 NP_114153 A/G V226I minus 24667026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25777 rs3749780 SLC25A2 83884 5 140662941 NM_031947 NP_114153 A/G V226I minus 24667026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25778 rs3749780 SLC25A2 83884 5 140662941 NM_031947 NP_114153 A/G V226I minus 24667026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 5q31 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 25779 rs3749817 FSTL4 23105 5 132562945 XM_048786 XP_048786 C/T T757M minus 4935843 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.49 123 "by doubleHit,freq,cluster" 5q31.1 follistatin-like 4 25780 rs3749817 FSTL4 23105 5 132562945 XM_048786 XP_048786 C/T T757M minus 23951378 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by doubleHit,freq,cluster" 5q31.1 follistatin-like 4 25781 rs3749817 FSTL4 23105 5 132562945 XM_048786 XP_048786 C/T T757M minus 23951378 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by doubleHit,freq,cluster" 5q31.1 follistatin-like 4 25782 rs3749817 FSTL4 23105 5 132562945 XM_048786 XP_048786 C/T T757M minus 23951378 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 5q31.1 follistatin-like 4 25783 rs3749894 TSPYL1 7259 6 116707146 XM_371844 XP_371844 C/T A181T plus 4935920 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.06 107 by freq 6q22-q23 TSPY-like 1 25784 rs3749895 TSPYL1 7259 6 116707467 XM_371844 XP_371844 C/G A74P plus 4935921 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.37 119 "by doubleHit,freq,cluster" 6q22-q23 TSPY-like 1 25785 rs3749930 NOX3 50508 6 155853359 NM_015718 NP_056533 G/T T171K plus 4935956 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.49 123 "by cluster,freq" 6q25.1-q26 NADPH oxidase 3 25786 rs3749930 NOX3 50508 6 155853359 NM_015718 NP_056533 G/T T171K plus 24047947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6q25.1-q26 NADPH oxidase 3 25787 rs3749930 NOX3 50508 6 155853359 NM_015718 NP_056533 G/T T171K plus 24047947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6q25.1-q26 NADPH oxidase 3 25788 rs3749930 NOX3 50508 6 155853359 NM_015718 NP_056533 G/T T171K plus 24047947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by cluster,freq" 6q25.1-q26 NADPH oxidase 3 25789 rs3749971 OR12D3 81797 6 29450754 NM_030959 NP_112221 C/T T97I minus 4935997 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 "by doubleHit,freq,cluster" 6p21.33 "olfactory receptor, family 12, subfamily D, member 3" 25790 rs3749971 OR12D3 81797 6 29450754 NM_030959 NP_112221 C/T T97I minus 24339648 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p21.33 "olfactory receptor, family 12, subfamily D, member 3" 25791 rs3749971 OR12D3 81797 6 29450754 NM_030959 NP_112221 C/T T97I minus 24339648 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 6p21.33 "olfactory receptor, family 12, subfamily D, member 3" 25792 rs3749971 OR12D3 81797 6 29450754 NM_030959 NP_112221 C/T T97I minus 24339648 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6p21.33 "olfactory receptor, family 12, subfamily D, member 3" 25793 rs3750009 PAPOLB 56903 7 4674626 NM_020144 NP_064529 G/T N19K minus 24050452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25794 rs3750009 PAPOLB 56903 7 4674626 NM_020144 NP_064529 G/T N19K minus 24050452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25795 rs3750009 PAPOLB 56903 7 4674626 NM_020144 NP_064529 G/T N19K minus 24050452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25796 rs3750010 PAPOLB 56903 7 4674432 NM_020144 NP_064529 A/G K84R minus 4936036 738 YUSUKE JBIC-ALLELE Japanese (752) 1276 0.08 123 "HapMap,doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25797 rs3750010 PAPOLB 56903 7 4674432 NM_020144 NP_064529 A/G K84R minus 10400843 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25798 rs3750010 PAPOLB 56903 7 4674432 NM_020144 NP_064529 A/G K84R minus 23516430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25799 rs3750010 PAPOLB 56903 7 4674432 NM_020144 NP_064529 A/G K84R minus 23516430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25800 rs3750010 PAPOLB 56903 7 4674432 NM_020144 NP_064529 A/G K84R minus 23516430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 25801 rs3750016 FOXK1 221937 7 4582244 XM_379771 XP_379771 C/T H2018R minus 4936042 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 123 "by cluster,freq" 7p22.2 forkhead box K1 25802 rs3750016 FOXK1 221937 7 4582244 XM_379771 XP_379771 C/T H2018R minus 23515514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 7p22.2 forkhead box K1 25803 rs3750016 FOXK1 221937 7 4582244 XM_379771 XP_379771 C/T H2018R minus 23515514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by cluster,freq" 7p22.2 forkhead box K1 25804 rs3750016 FOXK1 221937 7 4582244 XM_379771 XP_379771 C/T H2018R minus 23515514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 7p22.2 forkhead box K1 25805 rs3750050 PTPN12 5782 7 76901364 NM_002835 NP_002826 A/G T573A plus 4936076 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.31 123 "by cluster,freq" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 25806 rs3750050 PTPN12 5782 7 76901364 NM_002835 NP_002826 A/G T573A plus 24001266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 25807 rs3750050 PTPN12 5782 7 76901364 NM_002835 NP_002826 A/G T573A plus 24001266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 25808 rs3750050 PTPN12 5782 7 76901364 NM_002835 NP_002826 A/G T573A plus 24001266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 25809 rs3750103 CHN2 1124 7 29293169 NM_004067 NP_004058 C/T H204R minus 4936129 738 YUSUKE JBIC-ALLELE Japanese (752) 742 0.18 123 "by cluster,freq" 7p15.3 chimerin (chimaerin) 2 25810 rs3750103 CHN2 1124 7 29293169 NM_004067 NP_004058 C/T H204R minus 23376187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7p15.3 chimerin (chimaerin) 2 25811 rs3750103 CHN2 1124 7 29293169 NM_004067 NP_004058 C/T H204R minus 23376187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 7p15.3 chimerin (chimaerin) 2 25812 rs3750103 CHN2 1124 7 29293169 NM_004067 NP_004058 C/T H204R minus 23376187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 7p15.3 chimerin (chimaerin) 2 25813 rs3750146 FZD1 8321 7 90539873 NM_003505 NP_003496 C/T V343M minus 4936172 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.01 107 by freq 7q21 frizzled homolog 1 (Drosophila) 25814 rs3750208 ZC3HDC3 23144 8 144692178 NM_015117 NP_055932 C/T R168W minus 4936234 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 107 "HapMap,freq" 8q24.3 zinc finger CCCH type domain containing 3 25815 rs3750228 PRDM14 63978 8 71143292 NM_024504 NP_078780 C/T K244E plus 4936254 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.19 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 PR domain containing 14 25816 rs3750228 PRDM14 63978 8 71143292 NM_024504 NP_078780 C/T K244E plus 19765000 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 PR domain containing 14 25817 rs3750228 PRDM14 63978 8 71143292 NM_024504 NP_078780 C/T K244E plus 24036735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 PR domain containing 14 25818 rs3750228 PRDM14 63978 8 71143292 NM_024504 NP_078780 C/T K244E plus 24036735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 PR domain containing 14 25819 rs3750228 PRDM14 63978 8 71143292 NM_024504 NP_078780 C/T K244E plus 24036735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 PR domain containing 14 25820 rs3750266 SLCO5A1 81796 8 70907366 NM_030958 NP_112220 A/G L33F plus 4936292 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.34 107 "HapMap,freq" 8q13.2 "solute carrier organic anion transporter family, member 5A1" 25821 rs3750266 SLCO5A1 81796 8 70907366 NM_030958 NP_112220 A/G L33F plus 4936292 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 107 "HapMap,freq" 8q13.2 "solute carrier organic anion transporter family, member 5A1" 25822 rs3750300 PADI3 51702 1 17331440 NM_016233 NP_057317 A/G I52V plus 4936326 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.16 123 "by cluster,freq" 1p36.13 "peptidyl arginine deiminase, type III" 25823 rs3750300 PADI3 51702 1 17331440 NM_016233 NP_057317 A/G I52V plus 23845366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1p36.13 "peptidyl arginine deiminase, type III" 25824 rs3750300 PADI3 51702 1 17331440 NM_016233 NP_057317 A/G I52V plus 23845366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 1p36.13 "peptidyl arginine deiminase, type III" 25825 rs3750300 PADI3 51702 1 17331440 NM_016233 NP_057317 A/G I52V plus 23845366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 1p36.13 "peptidyl arginine deiminase, type III" 25826 rs3750425 TRPM6 140803 9 74606964 NM_017662 NP_060132 C/T V1393I plus 4936451 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.15 107 "HapMap,freq" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 25827 rs3750425 TRPM6 140803 9 74606964 NM_017662 NP_060132 C/T V1393I plus 4936451 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 107 "HapMap,freq" 9q21.13 "transient receptor potential cation channel, subfamily M, member 6" 25828 rs3750427 RUSC2 9853 9 35538479 XM_048462 XP_048462 A/G P654L minus 4936453 738 YUSUKE JBIC-ALLELE Japanese (752) 1114 0.01 107 by freq 9p13.2 RUN and SH3 domain containing 2 25829 rs3750428 RUSC2 9853 9 35537786 XM_048462 XP_048462 G/T E423A minus 4936454 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9p13.2 RUN and SH3 domain containing 2 25830 rs3750478 IFNA21 3452 9 21156077 NM_002175 NP_002166 C/T K179E plus 4936505 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.11 107 HapMap 9p22 "interferon, alpha 21" 25831 rs3750478 IFNA21 3452 9 21156077 NM_002175 NP_002166 C/T K179E plus 4936505 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9p22 "interferon, alpha 21" 25832 rs3750480 IFNA4 3441 9 21177121 NM_021068 NP_066546 A/T E137V plus 4936507 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.41 123 "by doubleHit,freq" 9p22 "interferon, alpha 4" 25833 rs3750575 ANXA7 310 10 74808697 NM_001156 NP_001147 A/G R419Q minus 4936602 738 YUSUKE JBIC-ALLELE Japanese (752) 926 0.05 120 "by cluster,freq" 10q21.1-q21.2 annexin A7 25834 rs3750575 ANXA7 310 10 74808697 NM_004034 NP_004025 A/G R441Q minus 4936602 738 YUSUKE JBIC-ALLELE Japanese (752) 926 0.05 120 "by cluster,freq" 10q21.1-q21.2 annexin A7 25835 rs3750784 DNAJB12 54788 10 73766384 NM_017626 NP_060096 C/T E304K plus 4936811 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 123 "by cluster,freq" 10q22.2 "DnaJ (Hsp40) homolog, subfamily B, member 12" 25836 rs3750784 DNAJB12 54788 10 73766384 NM_017626 NP_060096 C/T E304K plus 24117183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q22.2 "DnaJ (Hsp40) homolog, subfamily B, member 12" 25837 rs3750784 DNAJB12 54788 10 73766384 NM_017626 NP_060096 C/T E304K plus 24117183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q22.2 "DnaJ (Hsp40) homolog, subfamily B, member 12" 25838 rs3750784 DNAJB12 54788 10 73766384 NM_017626 NP_060096 C/T E304K plus 24117183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 10q22.2 "DnaJ (Hsp40) homolog, subfamily B, member 12" 25839 rs3750823 MMRN2 79812 10 88707134 NM_024756 NP_079032 C/T G49S plus 4936850 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.31 111 "by doubleHit,freq,cluster" 10q23.31 multimerin 2 25840 rs3750843 TACC2 10579 10 123960235 NM_006997 NP_008928 A/G N180S plus 4936870 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 25841 rs3750843 TACC2 10579 10 123960235 NM_206860 NP_996742 A/G N180S plus 4936870 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 25842 rs3750843 TACC2 10579 10 123960235 NM_206861 NP_996743 A/G N248S plus 4936870 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 25843 rs3750843 TACC2 10579 10 123960235 NM_206862 NP_996744 A/G N2102S plus 4936870 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 25844 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.25 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25845 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 901 AFFY AfAm 12 0.42 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25846 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 902 AFFY Caucasian 24 0.17 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25847 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 903 AFFY Asian 12 0.08 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25848 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 904 AFFY CEPH 12 0.17 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25849 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 4936925 905 AFFY PDpanel 46 0.33 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25850 rs3750898 DCLRE1A 9937 10 115599905 NM_014881 NP_055696 C/G D317H minus 15587118 1303 SEQUENOM CEPH CEPH (92) 92 0.17 121 "by doubleHit,freq,cluster" 10q25.1 "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" 25851 rs3750904 SCN9A 6335 2 166880900 NM_002977 NP_002968 C/T D1908G plus 23888381 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 25852 rs3750904 SCN9A 6335 2 166880900 NM_002977 NP_002968 C/T D1908G plus 23888381 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 25853 rs3750904 SCN9A 6335 2 166880900 NM_002977 NP_002968 C/T D1908G plus 23888381 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 25854 rs3750925 GRM5 2915 11 88420279 NM_000842 NP_000833 C/T F137S minus 4936952 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 11q14.2 "glutamate receptor, metabotropic 5" 25855 rs3750965 TPCN2 219931 11 68596736 NM_139075 NP_620714 A/G K376R plus 4936992 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.22 107 "HapMap,freq" 11q13.1-q13.2 two pore segment channel 2 25856 rs3750965 TPCN2 219931 11 68596736 NM_139075 NP_620714 A/G K376R plus 4936992 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 107 "HapMap,freq" 11q13.1-q13.2 two pore segment channel 2 25857 rs3751057 SCUBE2 57758 11 9008051 NM_020974 NP_066025 C/G T791S minus 4937084 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.09 123 "by cluster,freq" 11p15.3 "signal peptide, CUB domain, EGF-like 2" 25858 rs3751057 SCUBE2 57758 11 9008051 NM_020974 NP_066025 C/G T791S minus 23810144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 11p15.3 "signal peptide, CUB domain, EGF-like 2" 25859 rs3751057 SCUBE2 57758 11 9008051 NM_020974 NP_066025 C/G T791S minus 23810144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.3 "signal peptide, CUB domain, EGF-like 2" 25860 rs3751057 SCUBE2 57758 11 9008051 NM_020974 NP_066025 C/G T791S minus 23810144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 11p15.3 "signal peptide, CUB domain, EGF-like 2" 25861 rs3751059 SCUBE2 57758 11 9005573 NM_020974 NP_066025 C/G P843R minus 4937086 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0 107 by freq 11p15.3 "signal peptide, CUB domain, EGF-like 2" 25862 rs3751093 LGALS9 3965 17 22982431 NM_002308 NP_002299 A/G G5S plus 4937120 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 121 "HapMap,freq,cluster" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 25863 rs3751093 LGALS9 3965 17 22982431 NM_002308 NP_002299 A/G G5S plus 4937120 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 25864 rs3751093 LGALS9 3965 17 22982431 NM_009587 NP_033665 A/G G5S plus 4937120 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 121 "HapMap,freq,cluster" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 25865 rs3751093 LGALS9 3965 17 22982431 NM_009587 NP_033665 A/G G5S plus 4937120 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 17q11.2 "lectin, galactoside-binding, soluble, 9 (galectin 9)" 25866 rs3751107 MLPH 79083 2 238209251 NM_024101 NP_077006 C/T G172D minus 4937134 738 YUSUKE JBIC-ALLELE Japanese (752) 1470 0.07 120 "by cluster,freq" 2q37.3 melanophilin 25867 rs3751108 MLPH 79083 2 238209223 NM_024101 NP_077006 C/T D163N minus 4937135 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.04 107 by freq 2q37.3 melanophilin 25868 rs3751109 MLPH 79083 2 238209194 NM_024101 NP_077006 A/G L153P minus 4937136 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.07 107 "HapMap,freq" 2q37.3 melanophilin 25869 rs3751109 MLPH 79083 2 238209194 NM_024101 NP_077006 A/G L153P minus 4937136 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 107 "HapMap,freq" 2q37.3 melanophilin 25870 rs3751262 LOH12CR1 118426 12 12509957 NM_058169 NP_477517 A/G D191N plus 4937289 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.15 123 "HapMap,freq" 12p12 "loss of heterozygosity, 12, chromosomal region 1" 25871 rs3751262 LOH12CR1 118426 12 12509957 NM_058169 NP_477517 A/G D191N plus 4937289 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,freq" 12p12 "loss of heterozygosity, 12, chromosomal region 1" 25872 rs3751262 LOH12CR1 118426 12 12509957 NM_058169 NP_477517 A/G D191N plus 23916056 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq" 12p12 "loss of heterozygosity, 12, chromosomal region 1" 25873 rs3751262 LOH12CR1 118426 12 12509957 NM_058169 NP_477517 A/G D191N plus 23916056 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq" 12p12 "loss of heterozygosity, 12, chromosomal region 1" 25874 rs3751262 LOH12CR1 118426 12 12509957 NM_058169 NP_477517 A/G D191N plus 23916056 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq" 12p12 "loss of heterozygosity, 12, chromosomal region 1" 25875 rs3751325 KUB3 91419 12 56621893 NM_033276 NP_150592 A/T S48C minus 4937352 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.29 123 "HapMap,doubleHit,freq,cluster" 12q13.2 Ku70-binding protein 3 25876 rs3751325 KUB3 91419 12 56621893 NM_033276 NP_150592 A/T S48C minus 4937352 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 12q13.2 Ku70-binding protein 3 25877 rs3751325 KUB3 91419 12 56621893 NM_033276 NP_150592 A/T S48C minus 24460899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.37 123 "HapMap,doubleHit,freq,cluster" 12q13.2 Ku70-binding protein 3 25878 rs3751325 KUB3 91419 12 56621893 NM_033276 NP_150592 A/T S48C minus 24460899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 12q13.2 Ku70-binding protein 3 25879 rs3751325 KUB3 91419 12 56621893 NM_033276 NP_150592 A/T S48C minus 24460899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 12q13.2 Ku70-binding protein 3 25880 rs3751362 TNFRSF19 55504 13 23141204 NM_018647 NP_061117 C/T V405I minus 24045142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.03 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25881 rs3751362 TNFRSF19 55504 13 23141204 NM_018647 NP_061117 C/T V405I minus 24045142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.11 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25882 rs3751362 TNFRSF19 55504 13 23141204 NM_018647 NP_061117 C/T V405I minus 24045142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25883 rs3751362 TNFRSF19 55504 13 23141204 NM_148957 NP_683760 C/T V405I minus 24045142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.03 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25884 rs3751362 TNFRSF19 55504 13 23141204 NM_148957 NP_683760 C/T V405I minus 24045142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.11 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25885 rs3751362 TNFRSF19 55504 13 23141204 NM_148957 NP_683760 C/T V405I minus 24045142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 25886 rs3751449 MAP3K8 1326 10 30776822 NM_005204 NP_005195 C/T A148T minus 4937476 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1490 0 107 by freq 10p12.1 mitogen-activated protein kinase kinase kinase 8 25887 rs3751489 MMP14 4323 14 22383820 NM_004995 NP_004986 A/G R431H plus 4937516 738 YUSUKE JBIC-ALLELE Japanese (752) 1308 0.01 123 by freq 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 25888 rs3751489 MMP14 4323 14 22383820 NM_004995 NP_004986 A/G R431H plus 24226730 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 25889 rs3751489 MMP14 4323 14 22383820 NM_004995 NP_004986 A/G R431H plus 24226730 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 25890 rs3751489 MMP14 4323 14 22383820 NM_004995 NP_004986 A/G R431H plus 24226730 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 14q11-q12 matrix metalloproteinase 14 (membrane-inserted) 25891 rs3751501 ACIN1 22985 14 22619125 NM_014977 NP_055792 A/G S478F plus 4937528 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.1 107 by freq 14q11.2 apoptotic chromatin condensation inducer 1 25892 rs3751534 OAZ2 4947 15 62769771 NM_002537 NP_002528 C/T P70S minus 4937561 738 YUSUKE JBIC-ALLELE Japanese (752) 1268 0.02 107 HapMap 15q22.1 ornithine decarboxylase antizyme 2 25893 rs3751534 OAZ2 4947 15 62769771 NM_002537 NP_002528 C/T P70S minus 4937561 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 15q22.1 ornithine decarboxylase antizyme 2 25894 rs3751664 CACNA1H 8912 16 1194370 NM_021098 NP_066921 C/T R788C plus 4937691 738 YUSUKE JBIC-ALLELE Japanese (752) 1466 0.14 107 by freq 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 25895 rs3751682 CPNE7 27132 16 88190526 NM_014427 NP_055242 A/G P633L minus 4937709 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.08 107 by freq 16q24.3 copine VII 25896 rs3751682 CPNE7 27132 16 88190526 NM_153636 NP_705900 A/G P558L minus 4937709 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.08 107 by freq 16q24.3 copine VII 25897 rs3751886 CACNA1H 8912 16 1209004 NM_021098 NP_066921 A/G E1974G plus 4937913 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.08 120 "by cluster,freq" 16p13.3 "calcium channel, voltage-dependent, alpha 1H subunit" 25898 rs3751981 SMCR7 125170 17 18108499 NM_139162 NP_631901 A/G R354Q plus 4938009 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 7" 25899 rs3751981 SMCR7 125170 17 18108499 NM_148886 NP_683684 A/G R354Q plus 4938009 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 7" 25900 rs3752032 KCNJ12 3768 17 21259264 NM_021012 NP_066292 A/G R6Q plus 4938060 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.18 123 by freq 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 25901 rs3752032 KCNJ12 3768 17 21259264 NM_021012 NP_066292 A/G R6Q plus 24123765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 25902 rs3752032 KCNJ12 3768 17 21259264 NM_021012 NP_066292 A/G R6Q plus 24123765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 25903 rs3752032 KCNJ12 3768 17 21259264 NM_021012 NP_066292 A/G R6Q plus 24123765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 by freq 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 25904 rs3752094 DSG1 1828 18 27188639 NM_001942 NP_001933 A/G D828N plus 4938122 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 18q12.1 desmoglein 1 25905 rs3752094 DSG1 1828 18 27188639 NM_001942 NP_001933 A/G D828N plus 4938122 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 750 0 107 HapMap 18q12.1 desmoglein 1 25906 rs3752095 DSG1 1828 18 27188679 NM_001942 NP_001933 A/T Y841F plus 4938123 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.09 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 25907 rs3752095 DSG1 1828 18 27188679 NM_001942 NP_001933 A/T Y841F plus 24686132 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 25908 rs3752095 DSG1 1828 18 27188679 NM_001942 NP_001933 A/T Y841F plus 24686132 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 25909 rs3752095 DSG1 1828 18 27188679 NM_001942 NP_001933 A/T Y841F plus 24686132 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 25910 rs3752096 ZNF516 9658 18 72284048 XM_496278 XP_496278 C/T P77L minus 4938124 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.02 107 by freq 18q23 zinc finger protein 516 25911 rs3752097 ZNF516 9658 18 72283988 XM_496278 XP_496278 A/G N97S minus 4938125 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.03 107 "HapMap,freq" 18q23 zinc finger protein 516 25912 rs3752097 ZNF516 9658 18 72283988 XM_496278 XP_496278 A/G N97S minus 4938125 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 18q23 zinc finger protein 516 25913 rs3752109 ZNF42 7593 19 63774417 NM_003422 NP_003413 A/G R51H minus 4938137 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.3 107 "HapMap,freq" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25914 rs3752109 ZNF42 7593 19 63774417 NM_003422 NP_003413 A/G R51H minus 4938137 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 107 "HapMap,freq" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25915 rs3752109 ZNF42 7593 19 63774417 NM_198055 NP_932172 A/G R51H minus 4938137 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.3 107 "HapMap,freq" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25916 rs3752109 ZNF42 7593 19 63774417 NM_198055 NP_932172 A/G R51H minus 4938137 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 107 "HapMap,freq" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25917 rs3752110 ZNF42 7593 19 63774261 NM_003422 NP_003413 A/G R103H minus 4938138 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 by freq 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25918 rs3752110 ZNF42 7593 19 63774261 NM_198055 NP_932172 A/G R103H minus 4938138 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 by freq 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25919 rs3752111 ZNF42 7593 19 63774180 NM_003422 NP_003413 A/G R130Q minus 4938139 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.12 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25920 rs3752111 ZNF42 7593 19 63774180 NM_003422 NP_003413 A/G R130Q minus 4938139 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25921 rs3752111 ZNF42 7593 19 63774180 NM_198055 NP_932172 A/G R130Q minus 4938139 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.12 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25922 rs3752111 ZNF42 7593 19 63774180 NM_198055 NP_932172 A/G R130Q minus 4938139 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,freq,cluster" 19q13.2-q13.4 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) 25923 rs3752135 SIGLECL1 89858 19 56692436 NM_033329 NP_201586 A/C Y376S minus 4938163 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.43 121 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 25924 rs3752135 SIGLECL1 89858 19 56692436 NM_033329 NP_201586 A/C Y376S minus 12461991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 25925 rs3752135 SIGLECL1 89858 19 56692436 NM_053003 NP_443729 A/C Y494S minus 4938163 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.43 121 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 25926 rs3752135 SIGLECL1 89858 19 56692436 NM_053003 NP_443729 A/C Y494S minus 12461991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 121 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 25927 rs3752153 ZNF14 7561 19 19683954 NM_021030 NP_066358 C/T R379Q plus 4938181 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19p13.3-p13.2 zinc finger protein 14 (KOX 6) 25928 rs3752176 ZNF471 57573 19 61728465 NM_020813 NP_065864 A/G G406D plus 4938204 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.2 121 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 471 25929 rs3752176 ZNF471 57573 19 61728465 NM_020813 NP_065864 A/G G406D plus 12459241 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 121 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 471 25930 rs3752176 ZNF471 57573 19 61728465 NM_020813 NP_065864 A/G G406D plus 12459241 1303 SEQUENOM CEPH CEPH (92) 92 0.01 121 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 471 25931 rs3752187 EMR2 30817 19 14723278 NM_013447 NP_038475 A/G S665F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25932 rs3752187 EMR2 30817 19 14723278 NM_013447 NP_038475 A/G S665F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25933 rs3752187 EMR2 30817 19 14723278 NM_013447 NP_038475 A/G S665F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25934 rs3752187 EMR2 30817 19 14723278 NM_013447 NP_038475 A/G S665F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25935 rs3752187 EMR2 30817 19 14723278 NM_152916 NP_690880 A/G S616F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25936 rs3752187 EMR2 30817 19 14723278 NM_152916 NP_690880 A/G S616F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25937 rs3752187 EMR2 30817 19 14723278 NM_152916 NP_690880 A/G S616F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25938 rs3752187 EMR2 30817 19 14723278 NM_152916 NP_690880 A/G S616F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25939 rs3752187 EMR2 30817 19 14723278 NM_152917 NP_690881 A/G S572F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25940 rs3752187 EMR2 30817 19 14723278 NM_152917 NP_690881 A/G S572F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25941 rs3752187 EMR2 30817 19 14723278 NM_152917 NP_690881 A/G S572F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25942 rs3752187 EMR2 30817 19 14723278 NM_152917 NP_690881 A/G S572F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25943 rs3752187 EMR2 30817 19 14723278 NM_152918 NP_690882 A/G S523F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25944 rs3752187 EMR2 30817 19 14723278 NM_152918 NP_690882 A/G S523F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25945 rs3752187 EMR2 30817 19 14723278 NM_152918 NP_690882 A/G S523F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25946 rs3752187 EMR2 30817 19 14723278 NM_152918 NP_690882 A/G S523F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25947 rs3752187 EMR2 30817 19 14723278 NM_152919 NP_690883 A/G S654F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25948 rs3752187 EMR2 30817 19 14723278 NM_152919 NP_690883 A/G S654F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25949 rs3752187 EMR2 30817 19 14723278 NM_152919 NP_690883 A/G S654F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25950 rs3752187 EMR2 30817 19 14723278 NM_152919 NP_690883 A/G S654F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25951 rs3752187 EMR2 30817 19 14723278 NM_152920 NP_690884 A/G S605F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25952 rs3752187 EMR2 30817 19 14723278 NM_152920 NP_690884 A/G S605F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25953 rs3752187 EMR2 30817 19 14723278 NM_152920 NP_690884 A/G S605F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25954 rs3752187 EMR2 30817 19 14723278 NM_152920 NP_690884 A/G S605F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25955 rs3752187 EMR2 30817 19 14723278 NM_152921 NP_690885 A/G S561F plus 4938215 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25956 rs3752187 EMR2 30817 19 14723278 NM_152921 NP_690885 A/G S561F plus 23983680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25957 rs3752187 EMR2 30817 19 14723278 NM_152921 NP_690885 A/G S561F plus 23983680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25958 rs3752187 EMR2 30817 19 14723278 NM_152921 NP_690885 A/G S561F plus 23983680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 25959 rs3752199 ZNF317 57693 19 9128319 NM_020933 NP_065984 G/T Q19H plus 4938227 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.14 123 by freq 19p13 zinc finger protein 317 25960 rs3752199 ZNF317 57693 19 9128319 NM_020933 NP_065984 G/T Q19H plus 24719235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 19p13 zinc finger protein 317 25961 rs3752199 ZNF317 57693 19 9128319 NM_020933 NP_065984 G/T Q19H plus 24719235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19p13 zinc finger protein 317 25962 rs3752199 ZNF317 57693 19 9128319 NM_020933 NP_065984 G/T Q19H plus 24719235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 19p13 zinc finger protein 317 25963 rs3752220 NDUFB7 4713 19 14538043 NM_004146 NP_004137 C/G R106G plus 4938248 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.01 107 HapMap 19p13.12-p13.11 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa" 25964 rs3752220 NDUFB7 4713 19 14538043 NM_004146 NP_004137 C/G R106G plus 4938248 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 19p13.12-p13.11 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa" 25965 rs3752232 ABCA7 10347 19 994748 NM_019112 NP_061985 A/G T319A plus 4938260 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25966 rs3752232 ABCA7 10347 19 994748 NM_033308 NP_150651 A/G T181A plus 4938260 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.06 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25967 rs3752233 ABCA7 10347 19 996173 NM_019112 NP_061985 A/G R463H plus 4938261 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.15 110 "HapMap,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25968 rs3752233 ABCA7 10347 19 996173 NM_019112 NP_061985 A/G R463H plus 4938261 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.06 110 "HapMap,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25969 rs3752233 ABCA7 10347 19 996173 NM_033308 NP_150651 A/G R325H plus 4938261 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.15 110 "HapMap,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25970 rs3752233 ABCA7 10347 19 996173 NM_033308 NP_150651 A/G R325H plus 4938261 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.06 110 "HapMap,freq,cluster" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25971 rs3752239 ABCA7 10347 19 998537 NM_019112 NP_061985 A/C N718T plus 4938267 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.15 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25972 rs3752239 ABCA7 10347 19 998537 NM_033308 NP_150651 A/C N580T plus 4938267 738 YUSUKE JBIC-ALLELE Japanese (752) 1456 0.15 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25973 rs3752246 ABCA7 10347 19 1007492 NM_019112 NP_061985 C/G G1527A plus 4938274 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.36 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25974 rs3752246 ABCA7 10347 19 1007492 NM_019112 NP_061985 C/G G1527A plus 24069974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25975 rs3752246 ABCA7 10347 19 1007492 NM_019112 NP_061985 C/G G1527A plus 24069974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25976 rs3752246 ABCA7 10347 19 1007492 NM_019112 NP_061985 C/G G1527A plus 24069974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25977 rs3752246 ABCA7 10347 19 1007492 NM_033308 NP_150651 C/G G1389A plus 4938274 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.36 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25978 rs3752246 ABCA7 10347 19 1007492 NM_033308 NP_150651 C/G G1389A plus 24069974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25979 rs3752246 ABCA7 10347 19 1007492 NM_033308 NP_150651 C/G G1389A plus 24069974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25980 rs3752246 ABCA7 10347 19 1007492 NM_033308 NP_150651 C/G G1389A plus 24069974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 25981 rs3752289 ACTR5 79913 20 36833788 NM_024855 NP_079131 C/T P580L plus 4938317 738 YUSUKE JBIC-ALLELE Japanese (752) 1434 0.01 107 by freq 20q12 ARP5 actin-related protein 5 homolog (yeast) 25982 rs3752302 DHX35 60625 20 37100596 NM_021931 NP_068750 C/T P703L plus 4938330 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.24 123 "by cluster,freq" 20q11.22-q12 DEAH (Asp-Glu-Ala-His) box polypeptide 35 25983 rs3752302 DHX35 60625 20 37100596 NM_021931 NP_068750 C/T P703L plus 24050331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 20q11.22-q12 DEAH (Asp-Glu-Ala-His) box polypeptide 35 25984 rs3752302 DHX35 60625 20 37100596 NM_021931 NP_068750 C/T P703L plus 24050331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 20q11.22-q12 DEAH (Asp-Glu-Ala-His) box polypeptide 35 25985 rs3752302 DHX35 60625 20 37100596 NM_021931 NP_068750 C/T P703L plus 24050331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.21 123 "by cluster,freq" 20q11.22-q12 DEAH (Asp-Glu-Ala-His) box polypeptide 35 25986 rs3752321 LRRK1 79705 15 99426532 NM_024652 NP_078928 A/G E1297K plus 4938349 738 YUSUKE JBIC-ALLELE Japanese (752) 1250 0.03 107 by freq 15q26.3 leucine-rich repeat kinase 1 25987 rs3752365 ZNF573 126231 19 42922560 NM_152360 NP_689573 C/G G166A plus 4938393 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.07 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 573 25988 rs3752365 ZNF573 126231 19 42922560 NM_152360 NP_689573 C/G G166A plus 16788341 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 573 25989 rs3752365 ZNF573 126231 19 42922560 NM_152360 NP_689573 C/G G166A plus 24575689 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 573 25990 rs3752365 ZNF573 126231 19 42922560 NM_152360 NP_689573 C/G G166A plus 24575689 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 573 25991 rs3752365 ZNF573 126231 19 42922560 NM_152360 NP_689573 C/G G166A plus 24575689 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 573 25992 rs3752368 PTPRN2 5799 7 157430567 NM_002847 NP_002838 C/T V343M plus 4938396 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 25993 rs3752368 PTPRN2 5799 7 157430567 NM_130842 NP_570857 C/T V326M plus 4938396 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 25994 rs3752368 PTPRN2 5799 7 157430567 NM_130843 NP_570858 C/T V343M plus 4938396 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 107 by freq 7q36 "protein tyrosine phosphatase, receptor type, N polypeptide 2" 25995 rs3752516 TNR 7143 1 172104032 NM_003285 NP_003276 A/G G293S minus 4938544 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 by freq 1q24 "tenascin R (restrictin, janusin)" 25996 rs3752536 ARHGAP18 93663 6 130072908 NM_033515 NP_277050 A/G T23A minus 4938565 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.36 123 "by doubleHit,freq,cluster" 6q23.1 Rho GTPase activating protein 18 25997 rs3752536 ARHGAP18 93663 6 130072908 NM_033515 NP_277050 A/G T23A minus 24444967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q23.1 Rho GTPase activating protein 18 25998 rs3752536 ARHGAP18 93663 6 130072908 NM_033515 NP_277050 A/G T23A minus 24444967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6q23.1 Rho GTPase activating protein 18 25999 rs3752536 ARHGAP18 93663 6 130072908 NM_033515 NP_277050 A/G T23A minus 24444967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q23.1 Rho GTPase activating protein 18 26000 rs3752704 ANKHD1 54882 5 139887994 NM_017747 NP_060217 A/G N1760S plus 4938733 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q31.3 ankyrin repeat and KH domain containing 1 26001 rs3752704 MASK-BP3 404734 5 139887994 NM_020690 NP_065741 A/G N1760S plus 4938733 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q31.3 MASK-4E-BP3 alternate reading frame gene 26002 rs3752838 CAPN7 23473 3 15244438 NM_014296 NP_055111 A/G T272A plus 4938867 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 107 HapMap 3p24 calpain 7 26003 rs3752895 COL4A4 1286 2 227712278 NM_000092 NP_000083 A/G S1403P plus 4938924 738 YUSUKE JBIC-ALLELE Japanese (752) 1434 0.4 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 26004 rs3752895 COL4A4 1286 2 227712278 NM_000092 NP_000083 A/G S1403P plus 23199716 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 26005 rs3752895 COL4A4 1286 2 227712278 NM_000092 NP_000083 A/G S1403P plus 23199716 1372 PERLEGEN AFD_AFR_PANEL African American (24) 20 0.5 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 26006 rs3752895 COL4A4 1286 2 227712278 NM_000092 NP_000083 A/G S1403P plus 23199716 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 26007 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26008 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26009 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26010 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26011 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26012 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26013 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26014 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26015 rs3753494 AGL 178 1 100070124 NM_000028 NP_000019 C/T P1067S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26016 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26017 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26018 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26019 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26020 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26021 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26022 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26023 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26024 rs3753494 AGL 178 1 100070124 NM_000642 NP_000633 C/T P1067S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26025 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26026 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26027 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26028 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26029 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26030 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26031 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26032 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26033 rs3753494 AGL 178 1 100070124 NM_000643 NP_000634 C/T P1067S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26034 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26035 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26036 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26037 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26038 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26039 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26040 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26041 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26042 rs3753494 AGL 178 1 100070124 NM_000644 NP_000635 C/T P1067S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26043 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26044 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26045 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26046 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26047 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26048 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26049 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26050 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26051 rs3753494 AGL 178 1 100070124 NM_000645 NP_000636 C/T P1050S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26052 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.03 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26053 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 901 AFFY AfAm 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26054 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 902 AFFY Caucasian 20 0.05 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26055 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 903 AFFY Asian 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26056 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 904 AFFY CEPH 12 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26057 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 4939525 905 AFFY PDpanel 48 0.19 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26058 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 24245418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26059 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 24245418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26060 rs3753494 AGL 178 1 100070124 NM_000646 NP_000637 C/T P1051S plus 24245418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 26061 rs3753565 TPR 7175 1 183048145 NM_003292 NP_003283 A/G S960N minus 4939596 738 YUSUKE JBIC-ALLELE Japanese (752) 1274 0.16 123 "by cluster,freq" 1q25 translocated promoter region (to activated MET oncogene) 26062 rs3753565 TPR 7175 1 183048145 NM_003292 NP_003283 A/G S960N minus 23859490 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q25 translocated promoter region (to activated MET oncogene) 26063 rs3753565 TPR 7175 1 183048145 NM_003292 NP_003283 A/G S960N minus 23859490 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1q25 translocated promoter region (to activated MET oncogene) 26064 rs3753565 TPR 7175 1 183048145 NM_003292 NP_003283 A/G S960N minus 23859490 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1q25 translocated promoter region (to activated MET oncogene) 26065 rs3753841 COL11A1 1301 1 103091939 NM_001854 NP_001845 C/T P1323L minus 4939872 738 YUSUKE JBIC-ALLELE Japanese (752) 1254 0.33 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26066 rs3753841 COL11A1 1301 1 103091939 NM_001854 NP_001845 C/T P1323L minus 16395556 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26067 rs3753841 COL11A1 1301 1 103091939 NM_001854 NP_001845 C/T P1323L minus 24254088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.37 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26068 rs3753841 COL11A1 1301 1 103091939 NM_001854 NP_001845 C/T P1323L minus 24254088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26069 rs3753841 COL11A1 1301 1 103091939 NM_001854 NP_001845 C/T P1323L minus 24254088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26070 rs3753841 COL11A1 1301 1 103091939 NM_080629 NP_542196 C/T P1335L minus 4939872 738 YUSUKE JBIC-ALLELE Japanese (752) 1254 0.33 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26071 rs3753841 COL11A1 1301 1 103091939 NM_080629 NP_542196 C/T P1335L minus 16395556 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26072 rs3753841 COL11A1 1301 1 103091939 NM_080629 NP_542196 C/T P1335L minus 24254088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.37 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26073 rs3753841 COL11A1 1301 1 103091939 NM_080629 NP_542196 C/T P1335L minus 24254088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26074 rs3753841 COL11A1 1301 1 103091939 NM_080629 NP_542196 C/T P1335L minus 24254088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26075 rs3753841 COL11A1 1301 1 103091939 NM_080630 NP_542197 C/T P1284L minus 4939872 738 YUSUKE JBIC-ALLELE Japanese (752) 1254 0.33 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26076 rs3753841 COL11A1 1301 1 103091939 NM_080630 NP_542197 C/T P1284L minus 16395556 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26077 rs3753841 COL11A1 1301 1 103091939 NM_080630 NP_542197 C/T P1284L minus 24254088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.37 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26078 rs3753841 COL11A1 1301 1 103091939 NM_080630 NP_542197 C/T P1284L minus 24254088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26079 rs3753841 COL11A1 1301 1 103091939 NM_080630 NP_542197 C/T P1284L minus 24254088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 1p21 "collagen, type XI, alpha 1" 26080 rs3754112 IGSF2 9398 1 117266463 NM_004258 NP_004249 C/T N225S minus 4940143 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.09 123 "by doubleHit,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 26081 rs3754112 IGSF2 9398 1 117266463 NM_004258 NP_004249 C/T N225S minus 24264903 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 26082 rs3754112 IGSF2 9398 1 117266463 NM_004258 NP_004249 C/T N225S minus 24264903 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 26083 rs3754112 IGSF2 9398 1 117266463 NM_004258 NP_004249 C/T N225S minus 24264903 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1p13 "immunoglobulin superfamily, member 2" 26084 rs3754274 DLAD 58511 1 84579631 NM_021233 NP_067056 C/T R47K minus 24258206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 1p22.3 DNase II-like acid DNase 26085 rs3754274 DLAD 58511 1 84579631 NM_021233 NP_067056 C/T R47K minus 24258206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 1p22.3 DNase II-like acid DNase 26086 rs3754274 DLAD 58511 1 84579631 NM_021233 NP_067056 C/T R47K minus 24258206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 1p22.3 DNase II-like acid DNase 26087 rs3754413 ITPKB 3707 1 223230931 NM_002221 NP_002212 C/T A322T plus 4940444 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.08 123 "by cluster,freq" 1q42.13 "inositol 1,4,5-trisphosphate 3-kinase B" 26088 rs3754413 ITPKB 3707 1 223230931 NM_002221 NP_002212 C/T A322T plus 28460841 549 KYUGEN CP CEPH (78) 156 0.06 123 "by cluster,freq" 1q42.13 "inositol 1,4,5-trisphosphate 3-kinase B" 26089 rs3754413 ITPKB 3707 1 223230931 NM_002221 NP_002212 C/T A322T plus 28460841 1336 KYUGEN JPK3 Japanese (100) 200 0.08 123 "by cluster,freq" 1q42.13 "inositol 1,4,5-trisphosphate 3-kinase B" 26090 rs3754689 LCT 3938 2 136424478 NM_002299 NP_002290 A/G V219I minus 4940720 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.29 120 "by cluster,freq" 2q21 lactase 26091 rs3755320 UGT1A5 54579 2 234404061 NM_019078 NP_061951 G/T H142N minus 4941352 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.12 120 "HapMap,doubleHit,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 26092 rs3755320 UGT1A5 54579 2 234404061 NM_019078 NP_061951 G/T H142N minus 4941352 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 26093 rs3755321 UGT1A5 54579 2 234403825 NM_019078 NP_061951 A/G L63P minus 4941353 738 YUSUKE JBIC-ALLELE Japanese (752) 1104 0.11 120 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 26094 rs3755321 UGT1A5 54579 2 234403825 NM_019078 NP_061951 A/G L63P minus 4941353 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 26095 rs3755323 UGT1A5 54579 2 234403780 NM_019078 NP_061951 A/G L48S minus 19461323 885 TSC-CSHL HapMap-CEPH-30-trios 108 1 120 "HapMap,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 26096 rs3755652 SLC4A7 9497 3 27447940 NM_003615 NP_003606 C/T E326K plus 4941684 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.06 123 "by cluster,freq" 3p22 "solute carrier family 4, sodium bicarbonate cotransporter, member 7" 26097 rs3755652 SLC4A7 9497 3 27447940 NM_003615 NP_003606 C/T E326K plus 24280813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 3p22 "solute carrier family 4, sodium bicarbonate cotransporter, member 7" 26098 rs3755652 SLC4A7 9497 3 27447940 NM_003615 NP_003606 C/T E326K plus 24280813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3p22 "solute carrier family 4, sodium bicarbonate cotransporter, member 7" 26099 rs3755652 SLC4A7 9497 3 27447940 NM_003615 NP_003606 C/T E326K plus 24280813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 3p22 "solute carrier family 4, sodium bicarbonate cotransporter, member 7" 26100 rs3755955 IDUA 3425 4 984244 NM_000203 NP_000194 C/T R105Q minus 4941987 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.12 107 "HapMap,freq" 4p16.3 "iduronidase, alpha-L-" 26101 rs3755955 IDUA 3425 4 984244 NM_000203 NP_000194 C/T R105Q minus 4941987 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 107 "HapMap,freq" 4p16.3 "iduronidase, alpha-L-" 26102 rs3756275 SNX25 83891 4 186642900 NM_031953 NP_114159 A/G I586V plus 4942307 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.01 107 by freq 4q35.1 sorting nexin 25 26103 rs3756293 RAPGEF6 51735 5 130856197 NM_016340 NP_057424 G/T S620A minus 4942325 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 HapMap 5q31.1 Rap guanine nucleotide exchange factor (GEF) 6 26104 rs3756293 RAPGEF6 51735 5 130856197 NM_016340 NP_057424 G/T S620A minus 4942325 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q31.1 Rap guanine nucleotide exchange factor (GEF) 6 26105 rs3756323 PCDHB11 56125 5 140559542 NM_018931 NP_061754 C/T Q4R minus 4942355 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.06 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 11 26106 rs3756323 PCDHB11 56125 5 140559542 NM_018931 NP_061754 C/T Q4R minus 23351559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 11 26107 rs3756323 PCDHB11 56125 5 140559542 NM_018931 NP_061754 C/T Q4R minus 23351559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 11 26108 rs3756323 PCDHB11 56125 5 140559542 NM_018931 NP_061754 C/T Q4R minus 23351559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 11 26109 rs3756331 PCDHA8 56140 5 140201323 NM_018911 NP_061734 C/T S78N minus 4942363 738 YUSUKE JBIC-ALLELE Japanese (752) 716 0.49 107 by freq 5q31 protocadherin alpha 8 26110 rs3756331 PCDHA8 56140 5 140201323 NM_031856 NP_114062 C/T S78N minus 4942363 738 YUSUKE JBIC-ALLELE Japanese (752) 716 0.49 107 by freq 5q31 protocadherin alpha 8 26111 rs3756772 FRK 2444 6 116431835 NM_002031 NP_002022 A/G G122R minus 4942804 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.28 120 "by doubleHit,freq,cluster" 6q21-q22.3 fyn-related kinase 26112 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.5 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26113 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26114 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 902 AFFY Caucasian 24 0.08 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26115 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 903 AFFY Asian 10 0.1 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26116 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 904 AFFY CEPH 12 0.17 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26117 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 4943019 905 AFFY PDpanel 38 0.16 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26118 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 24049872 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26119 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 24049872 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26120 rs3756987 RSHL2 83861 6 159369109 NM_031924 NP_114130 A/G G518D minus 24049872 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 6q25.3 radial spokehead-like 2 26121 rs3757370 RARSL 57038 6 88287945 NM_020320 NP_064716 C/T I331V plus 4943402 738 YUSUKE JBIC-ALLELE Japanese (752) 1444 0.11 123 "HapMap,freq,cluster" 6q16.1 arginyl-tRNA synthetase-like 26122 rs3757370 RARSL 57038 6 88287945 NM_020320 NP_064716 C/T I331V plus 12786121 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 123 "HapMap,freq,cluster" 6q16.1 arginyl-tRNA synthetase-like 26123 rs3757370 RARSL 57038 6 88287945 NM_020320 NP_064716 C/T I331V plus 24016366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 6q16.1 arginyl-tRNA synthetase-like 26124 rs3757370 RARSL 57038 6 88287945 NM_020320 NP_064716 C/T I331V plus 24016366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 6q16.1 arginyl-tRNA synthetase-like 26125 rs3757370 RARSL 57038 6 88287945 NM_020320 NP_064716 C/T I331V plus 24016366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 6q16.1 arginyl-tRNA synthetase-like 26126 rs3758122 ATAD2 29028 8 124409640 NM_014109 NP_054828 C/T I1280T minus 4944154 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q24.13 "ATPase family, AAA domain containing 2" 26127 rs3758388 MPHOSPH1 9585 10 91478959 NM_016195 NP_057279 A/T H749L plus 24088402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 26128 rs3758388 MPHOSPH1 9585 10 91478959 NM_016195 NP_057279 A/T H749L plus 24088402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 26129 rs3758388 MPHOSPH1 9585 10 91478959 NM_016195 NP_057279 A/T H749L plus 24088402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 26130 rs3758390 MPHOSPH1 9585 10 91522548 NM_016195 NP_057279 A/G I1749V plus 4944422 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 107 "HapMap,freq" 10q23.32 M-phase phosphoprotein 1 26131 rs3758449 MYO3A 53904 10 26486318 NM_017433 NP_059129 C/T S956N minus 4944481 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.35 123 "HapMap,doubleHit,freq,cluster" 10p11.1 myosin IIIA 26132 rs3758449 MYO3A 53904 10 26486318 NM_017433 NP_059129 C/T S956N minus 10635383 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 10p11.1 myosin IIIA 26133 rs3758449 MYO3A 53904 10 26486318 NM_017433 NP_059129 C/T S956N minus 24688584 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 10p11.1 myosin IIIA 26134 rs3758449 MYO3A 53904 10 26486318 NM_017433 NP_059129 C/T S956N minus 24688584 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.42 123 "HapMap,doubleHit,freq,cluster" 10p11.1 myosin IIIA 26135 rs3758449 MYO3A 53904 10 26486318 NM_017433 NP_059129 C/T S956N minus 24688584 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 10p11.1 myosin IIIA 26136 rs3758911 CWF19L2 143884 11 106702850 NM_152434 NP_689647 A/G Y740C minus 4944943 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.21 123 "HapMap,doubleHit,freq,cluster" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 26137 rs3758911 CWF19L2 143884 11 106702850 NM_152434 NP_689647 A/G Y740C minus 10657173 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 26138 rs3758911 CWF19L2 143884 11 106702850 NM_152434 NP_689647 A/G Y740C minus 24109336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 26139 rs3758911 CWF19L2 143884 11 106702850 NM_152434 NP_689647 A/G Y740C minus 24109336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 26140 rs3758911 CWF19L2 143884 11 106702850 NM_152434 NP_689647 A/G Y740C minus 24109336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 26141 rs3758938 TBX10 347853 11 67158938 NM_005995 NP_005986 G/T K101T plus 4944970 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.1 123 "by doubleHit,freq,cluster" 11q13.1 T-box 10 26142 rs3758938 TBX10 347853 11 67158938 NM_005995 NP_005986 G/T K101T plus 24564262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,freq,cluster" 11q13.1 T-box 10 26143 rs3758938 TBX10 347853 11 67158938 NM_005995 NP_005986 G/T K101T plus 24564262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.18 123 "by doubleHit,freq,cluster" 11q13.1 T-box 10 26144 rs3758938 TBX10 347853 11 67158938 NM_005995 NP_005986 G/T K101T plus 24564262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.03 123 "by doubleHit,freq,cluster" 11q13.1 T-box 10 26145 rs3759259 STYK1 55359 12 10673382 NM_018423 NP_060893 A/G S204G minus 4945291 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.18 123 "by doubleHit,freq,cluster" 12p13.31 protein kinase STYK1 26146 rs3759259 STYK1 55359 12 10673382 NM_018423 NP_060893 A/G S204G minus 24701076 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 12p13.31 protein kinase STYK1 26147 rs3759259 STYK1 55359 12 10673382 NM_018423 NP_060893 A/G S204G minus 24701076 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 12p13.31 protein kinase STYK1 26148 rs3759259 STYK1 55359 12 10673382 NM_018423 NP_060893 A/G S204G minus 24701076 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 12p13.31 protein kinase STYK1 26149 rs3759880 RNF36 140691 15 42835943 NM_080745 NP_542783 C/T A31V plus 4945913 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.03 123 "by doubleHit,freq,cluster" 15q14 ring finger protein 36 26150 rs3759880 RNF36 140691 15 42835943 NM_080745 NP_542783 C/T A31V plus 24465161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 15q14 ring finger protein 36 26151 rs3759880 RNF36 140691 15 42835943 NM_080745 NP_542783 C/T A31V plus 24465161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 15q14 ring finger protein 36 26152 rs3759880 RNF36 140691 15 42835943 NM_080745 NP_542783 C/T A31V plus 24465161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 15q14 ring finger protein 36 26153 rs3760299 ZNF286 57335 17 15552220 NM_020652 NP_065703 A/G Y90H minus 4946332 738 YUSUKE JBIC-ALLELE Japanese (752) 928 0.48 111 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 286 26154 rs3760299 ZNF286 57335 17 15552220 NM_020652 NP_065703 A/G Y90H minus 6613691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 111 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 286 26155 rs3760413 EME1 146956 17 45807775 NM_152463 NP_689676 G/T E69D minus 4946446 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.27 123 "HapMap,doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 26156 rs3760413 EME1 146956 17 45807775 NM_152463 NP_689676 G/T E69D minus 14289557 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 26157 rs3760413 EME1 146956 17 45807775 NM_152463 NP_689676 G/T E69D minus 24124656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 26158 rs3760413 EME1 146956 17 45807775 NM_152463 NP_689676 G/T E69D minus 24124656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 26159 rs3760413 EME1 146956 17 45807775 NM_152463 NP_689676 G/T E69D minus 24124656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 26160 rs3760436 DNAH9 1770 17 11735882 NM_001372 NP_001363 C/T R3726W plus 4946469 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p12 "dynein, axonemal, heavy polypeptide 9" 26161 rs3760436 DNAH9 1770 17 11735882 NM_004662 NP_004653 C/T R38W plus 4946469 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p12 "dynein, axonemal, heavy polypeptide 9" 26162 rs3760454 HCA66 55813 17 27246115 NM_018428 NP_060898 A/G Q69R minus 4946487 738 YUSUKE JBIC-ALLELE Japanese (752) 1266 0.29 107 "HapMap,freq" 17q11.2 hepatocellular carcinoma-associated antigen 66 26163 rs3760454 HCA66 55813 17 27246115 NM_018428 NP_060898 A/G Q69R minus 4946487 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 107 "HapMap,freq" 17q11.2 hepatocellular carcinoma-associated antigen 66 26164 rs3760460 SCARF1 8578 17 1485052 NM_003693 NP_003684 G/T G748V minus 4946493 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.06 107 HapMap 17p13.3 "scavenger receptor class F, member 1" 26165 rs3760460 SCARF1 8578 17 1485052 NM_003693 NP_003684 G/T G748V minus 4946493 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.3 "scavenger receptor class F, member 1" 26166 rs3760460 SCARF1 8578 17 1485052 NM_145352 NP_663327 G/T G662V minus 4946493 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.06 107 HapMap 17p13.3 "scavenger receptor class F, member 1" 26167 rs3760460 SCARF1 8578 17 1485052 NM_145352 NP_663327 G/T G662V minus 4946493 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.3 "scavenger receptor class F, member 1" 26168 rs3761097 PRODH2 58510 19 40982817 NM_021232 NP_067055 A/G R525Q minus 4947131 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.16 107 "HapMap,freq" 19q13.1 proline dehydrogenase (oxidase) 2 26169 rs3761097 PRODH2 58510 19 40982817 NM_021232 NP_067055 A/G R525Q minus 4947131 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 107 "HapMap,freq" 19q13.1 proline dehydrogenase (oxidase) 2 26170 rs3761472 CGI-51 25813 22 42693023 NM_015380 NP_056195 A/G D110G plus 4947507 738 YUSUKE JBIC-ALLELE Japanese (752) 1266 0.44 123 "HapMap,freq,cluster" 22q13.31 CGI-51 protein 26171 rs3761472 CGI-51 25813 22 42693023 NM_015380 NP_056195 A/G D110G plus 12525795 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 123 "HapMap,freq,cluster" 22q13.31 CGI-51 protein 26172 rs3761472 CGI-51 25813 22 42693023 NM_015380 NP_056195 A/G D110G plus 24098615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 22q13.31 CGI-51 protein 26173 rs3761472 CGI-51 25813 22 42693023 NM_015380 NP_056195 A/G D110G plus 24098615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 22q13.31 CGI-51 protein 26174 rs3761472 CGI-51 25813 22 42693023 NM_015380 NP_056195 A/G D110G plus 24098615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 22q13.31 CGI-51 protein 26175 rs3761967 BDP1 55814 5 70836294 NM_018429 NP_060899 A/G V778M plus 4948002 738 YUSUKE JBIC-ALLELE Japanese (752) 1308 0.37 121 "HapMap,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 26176 rs3761967 BDP1 55814 5 70836294 NM_018429 NP_060899 A/G V778M plus 6480390 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 121 "HapMap,freq,cluster" 5q12-q13 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" 26177 rs3762001 FUCA2 2519 6 143864805 NM_032020 NP_114409 A/G H371Y plus 4948036 738 YUSUKE JBIC-ALLELE Japanese (752) 1282 0.21 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26178 rs3762001 FUCA2 2519 6 143864805 NM_032020 NP_114409 A/G H371Y plus 12916673 1303 SEQUENOM CEPH CEPH (92) 92 0.13 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26179 rs3762001 FUCA2 2519 6 143864805 NM_032020 NP_114409 A/G H371Y plus 23990602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.2 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26180 rs3762001 FUCA2 2519 6 143864805 NM_032020 NP_114409 A/G H371Y plus 23990602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26181 rs3762001 FUCA2 2519 6 143864805 NM_032020 NP_114409 A/G H371Y plus 23990602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26182 rs3762002 FUCA2 2519 6 143864850 NM_032020 NP_114409 C/T M356V plus 4948037 738 YUSUKE JBIC-ALLELE Japanese (752) 890 0.22 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26183 rs3762002 FUCA2 2519 6 143864850 NM_032020 NP_114409 C/T M356V plus 10338571 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26184 rs3762002 FUCA2 2519 6 143864850 NM_032020 NP_114409 C/T M356V plus 23416514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26185 rs3762002 FUCA2 2519 6 143864850 NM_032020 NP_114409 C/T M356V plus 23416514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26186 rs3762002 FUCA2 2519 6 143864850 NM_032020 NP_114409 C/T M356V plus 23416514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q24 "fucosidase, alpha-L- 2, plasma" 26187 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 738 YUSUKE JBIC-ALLELE Japanese (752) 1260 0.14 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26188 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 901 AFFY AfAm 10 1 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26189 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 902 AFFY Caucasian 24 0.46 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26190 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 903 AFFY Asian 12 0.08 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26191 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 904 AFFY CEPH 12 0.33 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26192 rs3762271 ASPM 259266 1 193802099 NM_018136 NP_060606 A/C L2647I minus 4948306 905 AFFY PDpanel 48 0.23 107 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 26193 rs3762448 INADL 10207 1 62168035 NM_005799 NP_005790 A/G R1282H plus 4948483 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.43 121 "by doubleHit,freq,cluster" 1p32.1 InaD-like protein 26194 rs3762448 INADL 10207 1 62168035 NM_176877 NP_795352 A/G R1282H plus 4948483 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.43 121 "by doubleHit,freq,cluster" 1p32.1 InaD-like protein 26195 rs3762448 INADL 10207 1 62168035 NM_176878 NP_795353 A/G R1282H plus 4948483 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.43 121 "by doubleHit,freq,cluster" 1p32.1 InaD-like protein 26196 rs3762579 GREB1 9687 2 11701663 NM_014668 NP_055483 C/T R973Q minus 4948614 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 107 by freq 2p25.1 GREB1 protein 26197 rs3762648 DPPA4 55211 3 110535422 NM_018189 NP_060659 A/G I45V minus 4948683 738 YUSUKE JBIC-ALLELE Japanese (752) 1476 0.25 121 "by doubleHit,freq,cluster" 3q13.13 developmental pluripotency associated 4 26198 rs3762697 MORC 27136 3 110236904 NM_014429 NP_055244 A/G M478V minus 23272638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 3q13 microrchidia homolog (mouse) 26199 rs3762697 MORC 27136 3 110236904 NM_014429 NP_055244 A/G M478V minus 23272638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 3q13 microrchidia homolog (mouse) 26200 rs3762697 MORC 27136 3 110236904 NM_014429 NP_055244 A/G M478V minus 23272638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 3q13 microrchidia homolog (mouse) 26201 rs3762836 CLOCK 9575 4 56151795 NM_004898 NP_004889 C/T H542R plus 4948871 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 by freq 4q12 clock homolog (mouse) 26202 rs3763118 ACSL6 23305 5 131353100 NM_015256 NP_056071 A/G V126M minus 4949153 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0 107 HapMap 5q31 acyl-CoA synthetase long-chain family member 6 26203 rs3763118 ACSL6 23305 5 131353100 NM_015256 NP_056071 A/G V126M minus 4949153 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q31 acyl-CoA synthetase long-chain family member 6 26204 rs3763978 TM4SF3 7103 12 69819801 NM_004616 NP_004607 C/G G73A plus 4950016 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 121 "HapMap,doubleHit,freq,cluster" 12q14.1-q21.1 transmembrane 4 superfamily member 3 26205 rs3763978 TM4SF3 7103 12 69819801 NM_004616 NP_004607 C/G G73A plus 20880745 1303 SEQUENOM CEPH CEPH (92) 92 0.28 121 "HapMap,doubleHit,freq,cluster" 12q14.1-q21.1 transmembrane 4 superfamily member 3 26206 rs3763980 SLC16A7 9194 12 58459623 NM_004731 NP_004722 A/T T445S minus 24473497 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 12q13 "solute carrier family 16 (monocarboxylic acid transporters), member 7" 26207 rs3763980 SLC16A7 9194 12 58459623 NM_004731 NP_004722 A/T T445S minus 24473497 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 12q13 "solute carrier family 16 (monocarboxylic acid transporters), member 7" 26208 rs3763980 SLC16A7 9194 12 58459623 NM_004731 NP_004722 A/T T445S minus 24473497 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 12q13 "solute carrier family 16 (monocarboxylic acid transporters), member 7" 26209 rs3764022 LLT1 29121 12 9724791 NM_013269 NP_037401 C/G L23V minus 24209396 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 12p13 lectin-like NK cell receptor 26210 rs3764022 LLT1 29121 12 9724791 NM_013269 NP_037401 C/G L23V minus 24209396 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 12p13 lectin-like NK cell receptor 26211 rs3764022 LLT1 29121 12 9724791 NM_013269 NP_037401 C/G L23V minus 24209396 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 12p13 lectin-like NK cell receptor 26212 rs3764034 SLC24A6 80024 12 112215923 NM_024959 NP_079235 C/T L358F minus 4950072 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.01 107 by freq 12q24.21 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6" 26213 rs3764045 SLCO1A2 6579 12 21319513 NM_005075 NP_005066 G/T L573V minus 16339724 1144 PHARMGKB_PMT PA129888520 552 0.12 120 "by cluster,freq" 12p12 "solute carrier organic anion transporter family, member 1A2" 26214 rs3764187 HERC1 8925 15 61798060 NM_003922 NP_003913 C/T L1278F minus 4950226 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 26215 rs3764340 WWOX 51741 16 77023938 NM_018560 NP_061030 C/G P282A plus 4950379 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.08 116 "HapMap,freq,cluster" 16q23.3-q24.1 WW domain containing oxidoreductase 26216 rs3764340 WWOX 51741 16 77023938 NM_018560 NP_061030 C/G P282A plus 12346211 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 116 "HapMap,freq,cluster" 16q23.3-q24.1 WW domain containing oxidoreductase 26217 rs3764418 CRLF3 51379 17 26144816 NM_015986 NP_057070 A/G V202M minus 4950457 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.01 107 HapMap 17q11.2 cytokine receptor-like factor 3 26218 rs3764418 CRLF3 51379 17 26144816 NM_015986 NP_057070 A/G V202M minus 4950457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17q11.2 cytokine receptor-like factor 3 26219 rs3764424 CTEN 84951 17 35898651 NM_032865 NP_116254 A/G L179P plus 4950463 738 YUSUKE JBIC-ALLELE Japanese (752) 1442 0.41 123 "HapMap,doubleHit,freq,cluster" 17q21.2 C-terminal tensin-like 26220 rs3764424 CTEN 84951 17 35898651 NM_032865 NP_116254 A/G L179P plus 4950463 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 17q21.2 C-terminal tensin-like 26221 rs3764424 CTEN 84951 17 35898651 NM_032865 NP_116254 A/G L179P plus 23593202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 17q21.2 C-terminal tensin-like 26222 rs3764424 CTEN 84951 17 35898651 NM_032865 NP_116254 A/G L179P plus 23593202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 17q21.2 C-terminal tensin-like 26223 rs3764424 CTEN 84951 17 35898651 NM_032865 NP_116254 A/G L179P plus 23593202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 17q21.2 C-terminal tensin-like 26224 rs3764537 ZNF616 90317 19 57310877 XM_030892 XP_030892 A/G H451R minus 4950576 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.21 116 "HapMap,doubleHit,freq,cluster" 19q13.41 zinc finger protein 616 26225 rs3764537 ZNF616 90317 19 57310877 XM_030892 XP_030892 A/G H451R minus 12456553 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 116 "HapMap,doubleHit,freq,cluster" 19q13.41 zinc finger protein 616 26226 rs3764548 ZNF175 7728 19 56782909 NM_007147 NP_009078 A/G C505R minus 4950587 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.4 zinc finger protein 175 26227 rs3764609 HIF3A 64344 19 51515542 NM_022462 NP_071907 A/G Q287R plus 4950648 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.5 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26228 rs3764609 HIF3A 64344 19 51515542 NM_022462 NP_071907 A/G Q287R plus 10940530 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.18 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26229 rs3764609 HIF3A 64344 19 51515542 NM_152794 NP_690007 A/G Q341R plus 4950648 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.5 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26230 rs3764609 HIF3A 64344 19 51515542 NM_152794 NP_690007 A/G Q341R plus 10940530 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.18 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26231 rs3764609 HIF3A 64344 19 51515542 NM_152795 NP_690008 A/G Q343R plus 4950648 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.5 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26232 rs3764609 HIF3A 64344 19 51515542 NM_152795 NP_690008 A/G Q343R plus 10940530 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.18 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26233 rs3764609 HIF3A 64344 19 51515542 NM_152796 NP_690009 A/G Q274R plus 4950648 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.5 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26234 rs3764609 HIF3A 64344 19 51515542 NM_152796 NP_690009 A/G Q274R plus 10940530 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.18 120 "HapMap,doubleHit,freq,cluster" 19q13.33 "hypoxia inducible factor 3, alpha subunit" 26235 rs3764645 ABCA7 10347 19 993809 NM_019112 NP_061985 A/G E188G plus 4950684 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.43 120 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 26236 rs3764645 ABCA7 10347 19 993809 NM_033308 NP_150651 A/G E50G plus 4950684 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.43 120 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 26237 rs3764647 ABCA7 10347 19 995712 NM_019112 NP_061985 A/G H395R plus 4950686 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.06 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 26238 rs3764647 ABCA7 10347 19 995712 NM_033308 NP_150651 A/G H257R plus 4950686 738 YUSUKE JBIC-ALLELE Japanese (752) 1462 0.06 110 "by cluster,freq" 19p13.3 "ATP-binding cassette, sub-family A (ABC1), member 7" 26239 rs3764656 THEG 51298 19 313283 NM_016585 NP_057669 A/G D353N minus 4950695 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 26240 rs3764656 THEG 51298 19 313283 NM_199202 NP_954672 A/G D329N minus 4950695 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 19pter-p13 Theg homolog (mouse) 26241 rs3764779 B4GALT4 8702 3 120428486 NM_003778 NP_003769 C/G Q116E minus 24144204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26242 rs3764779 B4GALT4 8702 3 120428486 NM_003778 NP_003769 C/G Q116E minus 24144204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26243 rs3764779 B4GALT4 8702 3 120428486 NM_003778 NP_003769 C/G Q116E minus 24144204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26244 rs3764779 B4GALT4 8702 3 120428486 NM_212543 NP_997708 C/G Q116E minus 24144204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26245 rs3764779 B4GALT4 8702 3 120428486 NM_212543 NP_997708 C/G Q116E minus 24144204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26246 rs3764779 B4GALT4 8702 3 120428486 NM_212543 NP_997708 C/G Q116E minus 24144204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 3q13.3 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4" 26247 rs3764795 GML 2765 8 143919622 NM_002066 NP_002057 C/T R54C plus 4950834 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 107 "HapMap,freq" 8q24.3 GPI anchored molecule like protein 26248 rs3764867 ICAM2 3384 17 59433900 NM_000873 NP_000864 C/T R256Q plus 4950907 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1442 0 107 by freq 17q23-q25 intercellular adhesion molecule 2 26249 rs3764872 LTBR 4055 12 6370248 NM_002342 NP_002333 C/T G398R minus 4950912 885 TSC-CSHL HapMap-CEPH-30-trios 100 1 107 HapMap 12p13 "lymphotoxin beta receptor (TNFR superfamily, member 3)" 26250 rs3764897 PLD2 5338 17 4669842 NM_002663 NP_002654 C/T G821S minus 4950937 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.13 123 "HapMap,doubleHit,freq,cluster" 17p13.1 phospholipase D2 26251 rs3764897 PLD2 5338 17 4669842 NM_002663 NP_002654 C/T G821S minus 6611005 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,freq,cluster" 17p13.1 phospholipase D2 26252 rs3764897 PLD2 5338 17 4669842 NM_002663 NP_002654 C/T G821S minus 23434145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 17p13.1 phospholipase D2 26253 rs3764897 PLD2 5338 17 4669842 NM_002663 NP_002654 C/T G821S minus 23434145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 17p13.1 phospholipase D2 26254 rs3764897 PLD2 5338 17 4669842 NM_002663 NP_002654 C/T G821S minus 23434145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 17p13.1 phospholipase D2 26255 rs3764944 MVP 9961 16 29763632 NM_005115 NP_005106 C/T R651Q minus 4950984 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 16p13.1-p11.2 major vault protein 26256 rs3764944 MVP 9961 16 29763632 NM_017458 NP_059447 C/T R651Q minus 4950984 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.02 107 by freq 16p13.1-p11.2 major vault protein 26257 rs3764990 MIR 220972 10 45276834 NM_145021 NP_659458 C/T P92S minus 4951030 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.13 107 by freq 10q11.22 "c-mir, cellular modulator of immune recognition" 26258 rs3765038 RAD17 5884 5 68717783 NM_002873 NP_002864 C/T R240Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26259 rs3765038 RAD17 5884 5 68717783 NM_133338 NP_579916 C/T R240Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26260 rs3765038 RAD17 5884 5 68717783 NM_133339 NP_579917 C/T R251Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26261 rs3765038 RAD17 5884 5 68717783 NM_133340 NP_579918 C/T R75Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26262 rs3765038 RAD17 5884 5 68717783 NM_133341 NP_579919 C/T R154Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26263 rs3765038 RAD17 5884 5 68717783 NM_133342 NP_579920 C/T R240Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26264 rs3765038 RAD17 5884 5 68717783 NM_133343 NP_579921 C/T R240Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26265 rs3765038 RAD17 5884 5 68717783 NM_133344 NP_579922 C/T R240Q minus 4951078 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 5q13 RAD17 homolog (S. pombe) 26266 rs3765101 PITRM1 10531 10 3187856 NM_014889 NP_055704 C/G Q516H plus 4951141 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.29 120 "by cluster,freq" 10p15.3 pitrilysin metalloproteinase 1 26267 rs3765124 ADAMDEC1 27299 8 24317471 NM_014479 NP_055294 A/G N444S plus 4951164 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.24 123 "by cluster,freq" 8p21.2 "ADAM-like, decysin 1" 26268 rs3765124 ADAMDEC1 27299 8 24317471 NM_014479 NP_055294 A/G N444S plus 24499645 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 8p21.2 "ADAM-like, decysin 1" 26269 rs3765124 ADAMDEC1 27299 8 24317471 NM_014479 NP_055294 A/G N444S plus 24499645 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 8p21.2 "ADAM-like, decysin 1" 26270 rs3765124 ADAMDEC1 27299 8 24317471 NM_014479 NP_055294 A/G N444S plus 24499645 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p21.2 "ADAM-like, decysin 1" 26271 rs3765148 DHDH 27294 19 54139525 NM_014475 NP_055290 C/T G282R minus 4951188 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.07 107 "HapMap,freq" 19q13.3 dihydrodiol dehydrogenase (dimeric) 26272 rs3765148 DHDH 27294 19 54139525 NM_014475 NP_055290 C/T G282R minus 4951188 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 107 "HapMap,freq" 19q13.3 dihydrodiol dehydrogenase (dimeric) 26273 rs3765163 ASPH 444 8 62721953 NM_004318 NP_004309 C/T G177R plus 4951203 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q12.1 aspartate beta-hydroxylase 26274 rs3765163 ASPH 444 8 62721953 NM_032466 NP_115855 C/T G177R plus 4951203 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q12.1 aspartate beta-hydroxylase 26275 rs3765163 ASPH 444 8 62721953 NM_032468 NP_115857 C/T G163R plus 4951203 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q12.1 aspartate beta-hydroxylase 26276 rs3765263 CHTF18 63922 16 780379 NM_022092 NP_071375 A/G K244R plus 4951303 738 YUSUKE JBIC-ALLELE Japanese (752) 1298 0.43 107 by freq 16p13.3 "CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" 26277 rs3765467 GLP1R 2740 6 39141573 NM_002062 NP_002053 C/T R131Q minus 14323048 693 EGP_SNPS PDR90 NIHPDR 180 0.04 119 "by cluster,freq" 6p21 glucagon-like peptide 1 receptor 26278 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 4951575 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.14 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26279 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 12675222 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26280 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 12675222 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26281 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 12675222 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26282 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 12675222 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26283 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 12675222 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26284 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 16339831 1147 PHARMGKB_PMT PA129732580 552 0.02 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26285 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 24224439 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26286 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 24224439 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26287 rs3765534 ABCC4 10257 13 94613416 NM_005845 NP_005836 C/T E757K plus 24224439 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 26288 rs3766160 ELA2B 51032 1 15554178 NM_015849 NP_056933 A/G D114N plus 4952202 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1266 0.48 120 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 26289 rs3766163 RSC1A1 6248 1 15731853 NM_006511 NP_006502 C/T F62L plus 4952205 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.08 123 "by cluster,freq" 1p36.1 "regulatory solute carrier protein, family 1, member 1" 26290 rs3766163 RSC1A1 6248 1 15731853 NM_006511 NP_006502 C/T F62L plus 23160079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 1p36.1 "regulatory solute carrier protein, family 1, member 1" 26291 rs3766163 RSC1A1 6248 1 15731853 NM_006511 NP_006502 C/T F62L plus 23160079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 19 0.5 123 "by cluster,freq" 1p36.1 "regulatory solute carrier protein, family 1, member 1" 26292 rs3766163 RSC1A1 6248 1 15731853 NM_006511 NP_006502 C/T F62L plus 23160079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p36.1 "regulatory solute carrier protein, family 1, member 1" 26293 rs3766317 SIL 6491 1 47429258 NM_003035 NP_003026 C/T A1145V minus 4952359 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 107 by freq 1p32 TAL1 (SCL) interrupting locus 26294 rs3766871 RYR2 6262 1 234104125 NM_001035 NP_001026 A/G G1886S plus 4952914 738 YUSUKE JBIC-ALLELE Japanese (752) 1294 0.05 107 by freq 1q42.1-q43 ryanodine receptor 2 (cardiac) 26295 rs3768067 CHS1 1130 1 232299791 NM_000081 NP_000072 C/T H123R plus 4954113 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1482 0 107 by freq 1q42.1-q42.2 Chediak-Higashi syndrome 1 26296 rs3768235 BCL10 8915 1 85445395 NM_003921 NP_003912 A/G G213E minus 4954282 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.14 123 "by cluster,freq" 1p22 B-cell CLL/lymphoma 10 26297 rs3768235 BCL10 8915 1 85445395 NM_003921 NP_003912 A/G G213E minus 23839855 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1p22 B-cell CLL/lymphoma 10 26298 rs3768235 BCL10 8915 1 85445395 NM_003921 NP_003912 A/G G213E minus 23839855 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p22 B-cell CLL/lymphoma 10 26299 rs3768235 BCL10 8915 1 85445395 NM_003921 NP_003912 A/G G213E minus 23839855 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 1p22 B-cell CLL/lymphoma 10 26300 rs3768249 CTBS 1486 1 84740990 NM_004388 NP_004379 G/T D310Y minus 4954296 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "by cluster,freq" 1p22 "chitobiase, di-N-acetyl-" 26301 rs3768249 CTBS 1486 1 84740990 NM_004388 NP_004379 G/T D310Y minus 23838054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p22 "chitobiase, di-N-acetyl-" 26302 rs3768249 CTBS 1486 1 84740990 NM_004388 NP_004379 G/T D310Y minus 23838054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p22 "chitobiase, di-N-acetyl-" 26303 rs3768249 CTBS 1486 1 84740990 NM_004388 NP_004379 G/T D310Y minus 23838054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p22 "chitobiase, di-N-acetyl-" 26304 rs3768721 SOCS5 9655 2 46898452 NM_014011 NP_054730 C/T G378R minus 4954775 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p21 suppressor of cytokine signaling 5 26305 rs3768721 SOCS5 9655 2 46898452 NM_144949 NP_659198 C/T G378R minus 4954775 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p21 suppressor of cytokine signaling 5 26306 rs3769148 ZAK 51776 2 173954020 NM_016653 NP_057737 A/G S531L minus 4955206 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.13 123 "by cluster,freq" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 26307 rs3769148 ZAK 51776 2 173954020 NM_016653 NP_057737 A/G S531L minus 24290044 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 26308 rs3769148 ZAK 51776 2 173954020 NM_016653 NP_057737 A/G S531L minus 24290044 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 26309 rs3769148 ZAK 51776 2 173954020 NM_016653 NP_057737 A/G S531L minus 24290044 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 26310 rs3769838 SP110 3431 2 230901696 NM_004509 NP_004500 C/T M249V plus 4955896 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 2q37.1 SP110 nuclear body protein 26311 rs3769838 SP110 3431 2 230901696 NM_004510 NP_004501 C/T M249V plus 4955896 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 2q37.1 SP110 nuclear body protein 26312 rs3769838 SP110 3431 2 230901696 NM_080424 NP_536349 C/T M249V plus 4955896 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.02 107 by freq 2q37.1 SP110 nuclear body protein 26313 rs3769969 TANK 10010 2 161917439 NM_004180 NP_004171 C/T R394Q minus 4956027 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.05 107 HapMap 2q24-q31 TRAF family member-associated NFKB activator 26314 rs3769969 TANK 10010 2 161917439 NM_004180 NP_004171 C/T R394Q minus 4956027 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q24-q31 TRAF family member-associated NFKB activator 26315 rs3770213 ZNF142 7701 2 219333877 XM_376172 XP_376172 A/T L1278H plus 24658561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26316 rs3770213 ZNF142 7701 2 219333877 XM_376172 XP_376172 A/T L1278H plus 24658561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26317 rs3770213 ZNF142 7701 2 219333877 XM_376172 XP_376172 A/T L1278H plus 24658561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 by freq 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26318 rs3770214 ZNF142 7701 2 219334493 XM_376172 XP_376172 C/T S1073G plus 4956272 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.06 123 "HapMap,freq,cluster" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26319 rs3770214 ZNF142 7701 2 219334493 XM_376172 XP_376172 C/T S1073G plus 9977579 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,freq,cluster" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26320 rs3770214 ZNF142 7701 2 219334493 XM_376172 XP_376172 C/T S1073G plus 24658564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,freq,cluster" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26321 rs3770214 ZNF142 7701 2 219334493 XM_376172 XP_376172 C/T S1073G plus 24658564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26322 rs3770214 ZNF142 7701 2 219334493 XM_376172 XP_376172 C/T S1073G plus 24658564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq,cluster" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 26323 rs3770436 GORASP2 26003 2 171648083 NM_015530 NP_056345 A/G S432F minus 4956494 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.36 107 by freq 2q31.1-q31.2 "golgi reassembly stacking protein 2, 55kDa" 26324 rs3770655 ETAA16 54465 2 67543776 NM_019002 NP_061875 A/G P771S minus 4956714 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.39 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26325 rs3770655 ETAA16 54465 2 67543776 NM_019002 NP_061875 A/G P771S minus 23861818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26326 rs3770655 ETAA16 54465 2 67543776 NM_019002 NP_061875 A/G P771S minus 23861818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26327 rs3770655 ETAA16 54465 2 67543776 NM_019002 NP_061875 A/G P771S minus 23861818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26328 rs3770657 ETAA16 54465 2 67542631 NM_019002 NP_061875 C/T S389N minus 4956716 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26329 rs3770657 ETAA16 54465 2 67542631 NM_019002 NP_061875 C/T S389N minus 23861806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26330 rs3770657 ETAA16 54465 2 67542631 NM_019002 NP_061875 C/T S389N minus 23861806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26331 rs3770657 ETAA16 54465 2 67542631 NM_019002 NP_061875 C/T S389N minus 23861806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 26332 rs3770739 AFTIPHILIN 54812 2 64691908 NM_017657 NP_060127 C/T N550S minus 4956798 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.01 123 "HapMap,cluster" 2p15 aftiphilin protein 26333 rs3770739 AFTIPHILIN 54812 2 64691908 NM_017657 NP_060127 C/T N550S minus 4956798 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 2p15 aftiphilin protein 26334 rs3770739 AFTIPHILIN 54812 2 64691908 NM_017657 NP_060127 C/T N550S minus 23225796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 2p15 aftiphilin protein 26335 rs3770739 AFTIPHILIN 54812 2 64691908 NM_017657 NP_060127 C/T N550S minus 23225796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,cluster" 2p15 aftiphilin protein 26336 rs3770739 AFTIPHILIN 54812 2 64691908 NM_017657 NP_060127 C/T N550S minus 23225796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 2p15 aftiphilin protein 26337 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 4956799 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.3 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26338 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26339 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 901 AFFY AfAm 6 0.5 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26340 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 902 AFFY Caucasian 24 1 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26341 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 903 AFFY Asian 12 0.25 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26342 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 904 AFFY CEPH 12 1 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26343 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 5592307 905 AFFY PDpanel 46 0.15 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26344 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 23225783 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26345 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 23225783 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26346 rs3770740 AFTIPHILIN 54812 2 64691160 NM_017657 NP_060127 C/T E301K minus 23225783 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 2p15 aftiphilin protein 26347 rs3772173 SKIL 6498 3 171560934 NM_005414 NP_005405 C/T A38V plus 4958234 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.14 116 "by cluster,freq" 3q26 SKI-like 26348 rs3772219 ARHGEF3 50650 3 56746291 NM_019555 NP_062455 G/T L335V minus 4958280 738 YUSUKE JBIC-ALLELE Japanese (752) 738 0.41 123 "by doubleHit,freq,cluster" 3p21-p13 Rho guanine nucleotide exchange factor (GEF) 3 26349 rs3772219 ARHGEF3 50650 3 56746291 NM_019555 NP_062455 G/T L335V minus 24186093 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 3p21-p13 Rho guanine nucleotide exchange factor (GEF) 3 26350 rs3772219 ARHGEF3 50650 3 56746291 NM_019555 NP_062455 G/T L335V minus 24186093 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 3p21-p13 Rho guanine nucleotide exchange factor (GEF) 3 26351 rs3772219 ARHGEF3 50650 3 56746291 NM_019555 NP_062455 G/T L335V minus 24186093 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 3p21-p13 Rho guanine nucleotide exchange factor (GEF) 3 26352 rs3772406 SMARCC1 6599 3 47604797 NM_003074 NP_003065 G/T P1075H plus 4958467 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 107 by freq 3p23-p21 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1" 26353 rs3774395 CCK 885 3 42274659 NM_000729 NP_000720 A/G R95W plus 4960458 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 123 "HapMap,cluster" 3p22-p21.3 cholecystokinin 26354 rs3774395 CCK 885 3 42274659 NM_000729 NP_000720 A/G R95W plus 4960458 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 123 "HapMap,cluster" 3p22-p21.3 cholecystokinin 26355 rs3774395 CCK 885 3 42274659 NM_000729 NP_000720 A/G R95W plus 23905678 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 3p22-p21.3 cholecystokinin 26356 rs3774395 CCK 885 3 42274659 NM_000729 NP_000720 A/G R95W plus 23905678 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,cluster" 3p22-p21.3 cholecystokinin 26357 rs3774395 CCK 885 3 42274659 NM_000729 NP_000720 A/G R95W plus 23905678 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,cluster" 3p22-p21.3 cholecystokinin 26358 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 4960792 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.46 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26359 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 10083927 901 AFFY AfAm 12 0.42 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26360 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 10083927 902 AFFY Caucasian 22 0.36 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26361 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 10083927 903 AFFY Asian 10 0.4 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26362 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 10083927 904 AFFY CEPH 10 0.3 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26363 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 10083927 905 AFFY PDpanel 42 0.29 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26364 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 23295729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26365 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 23295729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26366 rs3774729 SCA7 6314 3 63957122 NM_000333 NP_000324 A/G V862M plus 23295729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 3p21.1-p12 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) 26367 rs3775291 TLR3 7098 4 187379223 NM_003265 NP_003256 A/G L412F minus 4961357 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.26 114 "by cluster,freq" 4q35 toll-like receptor 3 26368 rs3775291 TLR3 7098 4 187379223 NM_003265 NP_003256 A/G L412F minus 7987148 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 114 "by cluster,freq" 4q35 toll-like receptor 3 26369 rs3775291 TLR3 7098 4 187379223 NM_003265 NP_003256 A/G L412F minus 7987148 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.3 114 "by cluster,freq" 4q35 toll-like receptor 3 26370 rs3775291 TLR3 7098 4 187379223 NM_003265 NP_003256 A/G L412F minus 7987148 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 114 "by cluster,freq" 4q35 toll-like receptor 3 26371 rs3775481 MMRN1 22915 4 91214963 NM_007351 NP_031377 A/G C985Y plus 4961547 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 4q22 multimerin 1 26372 rs3776070 SLC26A2 1836 5 149341414 NM_000112 NP_000103 A/T T689S plus 4962136 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 107 "HapMap,freq" 5q31-q34 "solute carrier family 26 (sulfate transporter), member 2" 26373 rs3776096 PCDHB6 56130 5 140510713 NM_018939 NP_061762 C/T V231I minus 4962162 738 YUSUKE JBIC-ALLELE Japanese (752) 1474 0.42 123 "HapMap,freq,cluster" 5q31 protocadherin beta 6 26374 rs3776096 PCDHB6 56130 5 140510713 NM_018939 NP_061762 C/T V231I minus 4962162 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,freq,cluster" 5q31 protocadherin beta 6 26375 rs3776096 PCDHB6 56130 5 140510713 NM_018939 NP_061762 C/T V231I minus 23951288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq,cluster" 5q31 protocadherin beta 6 26376 rs3776096 PCDHB6 56130 5 140510713 NM_018939 NP_061762 C/T V231I minus 23951288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,freq,cluster" 5q31 protocadherin beta 6 26377 rs3776096 PCDHB6 56130 5 140510713 NM_018939 NP_061762 C/T V231I minus 23951288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 5q31 protocadherin beta 6 26378 rs3776099 PCDHB4 56131 5 140483025 NM_018938 NP_061761 C/T A421T minus 4962165 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.09 107 by freq 5q31 protocadherin beta 4 26379 rs3777134 SPINK5 11005 5 147478212 NM_006846 NP_006837 C/T R711Q minus 4963201 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.42 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 26380 rs3777134 SPINK5 11005 5 147478212 NM_006846 NP_006837 C/T R711Q minus 24682437 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 26381 rs3777134 SPINK5 11005 5 147478212 NM_006846 NP_006837 C/T R711Q minus 24682437 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 26382 rs3777134 SPINK5 11005 5 147478212 NM_006846 NP_006837 C/T R711Q minus 24682437 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 26383 rs3778005 IMPG1 3617 6 76690105 NM_001563 NP_001554 A/G S761N minus 4964072 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.05 121 "HapMap,doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 26384 rs3778005 IMPG1 3617 6 76690105 NM_001563 NP_001554 A/G S761N minus 17099388 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 121 "HapMap,doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 26385 rs3778142 LAMA2 3908 6 129506817 NM_000426 NP_000417 A/G Y240H minus 4964209 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1482 0.01 107 by freq 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 26386 rs3778922 GALNT11 63917 7 151239980 NM_022087 NP_071370 A/C D197Y minus 4964989 738 YUSUKE JBIC-ALLELE Japanese (752) 1480 0.07 107 by freq 7q34-q36 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) 26387 rs3779536 FSCN3 29999 7 126827928 NM_020369 NP_065102 A/C A24S minus 4965603 738 YUSUKE JBIC-ALLELE Japanese (752) 1120 0.06 123 "by cluster,freq" 7q31.3 "fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)" 26388 rs3779536 FSCN3 29999 7 126827928 NM_020369 NP_065102 A/C A24S minus 23356600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 7q31.3 "fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)" 26389 rs3779536 FSCN3 29999 7 126827928 NM_020369 NP_065102 A/C A24S minus 23356600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7q31.3 "fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)" 26390 rs3779536 FSCN3 29999 7 126827928 NM_020369 NP_065102 A/C A24S minus 23356600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 7q31.3 "fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)" 26391 rs3779620 TOPK 55872 8 27735900 NM_018492 NP_060962 A/G N107S minus 4965687 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.31 123 "by doubleHit,freq,cluster" 8p21.2 T-LAK cell-originated protein kinase 26392 rs3779620 TOPK 55872 8 27735900 NM_018492 NP_060962 A/G N107S minus 10479795 1303 SEQUENOM CEPH CEPH (92) 92 0.06 123 "by doubleHit,freq,cluster" 8p21.2 T-LAK cell-originated protein kinase 26393 rs3779620 TOPK 55872 8 27735900 NM_018492 NP_060962 A/G N107S minus 24087191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 8p21.2 T-LAK cell-originated protein kinase 26394 rs3779620 TOPK 55872 8 27735900 NM_018492 NP_060962 A/G N107S minus 24087191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by doubleHit,freq,cluster" 8p21.2 T-LAK cell-originated protein kinase 26395 rs3779620 TOPK 55872 8 27735900 NM_018492 NP_060962 A/G N107S minus 24087191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 8p21.2 T-LAK cell-originated protein kinase 26396 rs3780220 ADFP 123 9 19108390 NM_001122 NP_001113 C/T L281F minus 4966287 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9p22.1-p21.3 adipose differentiation-related protein 26397 rs3780548 ZNF510 22869 9 96605042 XM_376895 XP_376895 A/G C89R plus 4966615 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.08 123 "HapMap,doubleHit,freq,cluster" 9q22.33 zinc finger protein 510 26398 rs3780548 ZNF510 22869 9 96605042 XM_376895 XP_376895 A/G C89R plus 10531118 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 9q22.33 zinc finger protein 510 26399 rs3780548 ZNF510 22869 9 96605042 XM_376895 XP_376895 A/G C89R plus 23564599 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 9q22.33 zinc finger protein 510 26400 rs3780548 ZNF510 22869 9 96605042 XM_376895 XP_376895 A/G C89R plus 23564599 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 9q22.33 zinc finger protein 510 26401 rs3780548 ZNF510 22869 9 96605042 XM_376895 XP_376895 A/G C89R plus 23564599 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 9q22.33 zinc finger protein 510 26402 rs3780679 CDK5RAP2 55755 9 120285466 NM_018249 NP_060719 C/G R1045T plus 4966746 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 26403 rs3780679 CDK5RAP2 55755 9 120285466 NM_018249 NP_060719 C/G R1045T plus 23582700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 26404 rs3780679 CDK5RAP2 55755 9 120285466 NM_018249 NP_060719 C/G R1045T plus 23582700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 26405 rs3780679 CDK5RAP2 55755 9 120285466 NM_018249 NP_060719 C/G R1045T plus 23582700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 26406 rs3781365 SH3MD1 9644 10 105351861 XM_374831 XP_374831 A/G R842Q minus 4967433 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.09 107 by freq 10q25.1 SH3 multiple domains 1 26407 rs3781408 CTBP2 1488 10 126705682 NM_022802 NP_073713 A/G D213N minus 4967476 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.07 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26408 rs3781408 CTBP2 1488 10 126705682 NM_022802 NP_073713 A/G D213N minus 23625792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26409 rs3781408 CTBP2 1488 10 126705682 NM_022802 NP_073713 A/G D213N minus 23625792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26410 rs3781408 CTBP2 1488 10 126705682 NM_022802 NP_073713 A/G D213N minus 23625792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26411 rs3781409 CTBP2 1488 10 126705619 NM_022802 NP_073713 A/G V234M minus 4967477 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.31 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26412 rs3781409 CTBP2 1488 10 126705619 NM_022802 NP_073713 A/G V234M minus 24583969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26413 rs3781409 CTBP2 1488 10 126705619 NM_022802 NP_073713 A/G V234M minus 24583969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26414 rs3781409 CTBP2 1488 10 126705619 NM_022802 NP_073713 A/G V234M minus 24583969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26415 rs3781411 CTBP2 1488 10 126705426 NM_022802 NP_073713 A/G R298Q minus 4967479 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26416 rs3781411 CTBP2 1488 10 126705426 NM_022802 NP_073713 A/G R298Q minus 23625764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26417 rs3781411 CTBP2 1488 10 126705426 NM_022802 NP_073713 A/G R298Q minus 23625764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26418 rs3781411 CTBP2 1488 10 126705426 NM_022802 NP_073713 A/G R298Q minus 23625764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 10q26.2 C-terminal binding protein 2 26419 rs3781412 CTBP2 1488 10 126705144 NM_022802 NP_073713 C/T L392P minus 4967480 738 YUSUKE JBIC-ALLELE Japanese (752) 1460 0.38 123 by freq 10q26.2 C-terminal binding protein 2 26420 rs3781412 CTBP2 1488 10 126705144 NM_022802 NP_073713 C/T L392P minus 24583952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 10q26.2 C-terminal binding protein 2 26421 rs3781412 CTBP2 1488 10 126705144 NM_022802 NP_073713 C/T L392P minus 24583952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 10q26.2 C-terminal binding protein 2 26422 rs3781412 CTBP2 1488 10 126705144 NM_022802 NP_073713 C/T L392P minus 24583952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 10q26.2 C-terminal binding protein 2 26423 rs3782356 MLL2 8085 12 47706345 NM_003482 NP_003473 C/T R4949H plus 4968424 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.02 123 "HapMap,cluster" 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 26424 rs3782356 MLL2 8085 12 47706345 NM_003482 NP_003473 C/T R4949H plus 4968424 885 TSC-CSHL HapMap-CEPH-30-trios 98 1 123 "HapMap,cluster" 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 26425 rs3782356 MLL2 8085 12 47706345 NM_003482 NP_003473 C/T R4949H plus 23978521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 26426 rs3782356 MLL2 8085 12 47706345 NM_003482 NP_003473 C/T R4949H plus 23978521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,cluster" 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 26427 rs3782356 MLL2 8085 12 47706345 NM_003482 NP_003473 C/T R4949H plus 23978521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,cluster" 12q12-q14 myeloid/lymphoid or mixed-lineage leukemia 2 26428 rs3782369 SLC6A15 55117 12 83759695 NM_182767 NP_877499 A/C I603M plus 4968437 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 12q21.3 "solute carrier family 6 (neurotransmitter transporter), member 15" 26429 rs3782489 KRT1B 374454 12 51372912 NM_175078 NP_778253 A/G T367M plus 4968557 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.19 123 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 26430 rs3782489 KRT1B 374454 12 51372912 NM_175078 NP_778253 A/G T367M plus 4968557 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 123 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 26431 rs3782489 KRT1B 374454 12 51372912 NM_175078 NP_778253 A/G T367M plus 23361217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 26432 rs3782489 KRT1B 374454 12 51372912 NM_175078 NP_778253 A/G T367M plus 23361217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 26433 rs3782489 KRT1B 374454 12 51372912 NM_175078 NP_778253 A/G T367M plus 23361217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 26434 rs3783167 MRPS31 10240 13 40221397 NM_005830 NP_005821 C/T D279N plus 4969235 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.05 119 "by doubleHit,freq,cluster" 13q13.3 mitochondrial ribosomal protein S31 26435 rs3783611 VCAM1 7412 1 100906708 NM_001078 NP_001069 C/T S318F plus 4969965 733 SJCHANOCK 40AA USA African-Americnas (40) 80 0.04 108 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26436 rs3783611 VCAM1 7412 1 100906708 NM_001078 NP_001069 C/T S318F plus 4969965 734 SJCHANOCK AAVALIDATION CORIELL (100) and USA (130) 460 0.04 108 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26437 rs3783611 VCAM1 7412 1 100906708 NM_001078 NP_001069 C/T S318F plus 5105936 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 108 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26438 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 4969967 733 SJCHANOCK 40AA USA African-Americnas (40) 80 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26439 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 4969967 734 SJCHANOCK AAVALIDATION CORIELL (100) and USA (130) 460 0.1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26440 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 5105947 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26441 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 23158655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26442 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 23158655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26443 rs3783613 VCAM1 7412 1 100908808 NM_001078 NP_001069 C/G G413A plus 23158655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26444 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 4969967 733 SJCHANOCK 40AA USA African-Americnas (40) 80 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26445 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 4969967 734 SJCHANOCK AAVALIDATION CORIELL (100) and USA (130) 460 0.1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26446 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 5105947 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26447 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 23158655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26448 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 23158655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26449 rs3783613 VCAM1 7412 1 100908808 NM_080682 NP_542413 C/G G321A plus 23158655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26450 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 4969969 733 SJCHANOCK 40AA USA African-Americnas (40) 80 0.05 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26451 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 4969969 734 SJCHANOCK AAVALIDATION CORIELL (100) and USA (130) 460 0.07 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26452 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 5105966 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26453 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 23158794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26454 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 23158794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26455 rs3783615 VCAM1 7412 1 100915786 NM_001078 NP_001069 A/T I716L plus 23158794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26456 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 4969969 733 SJCHANOCK 40AA USA African-Americnas (40) 80 0.05 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26457 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 4969969 734 SJCHANOCK AAVALIDATION CORIELL (100) and USA (130) 460 0.07 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26458 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 5105966 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26459 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 23158794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26460 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 23158794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26461 rs3783615 VCAM1 7412 1 100915786 NM_080682 NP_542413 A/T I624L plus 23158794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p32-p31 vascular cell adhesion molecule 1 26462 rs3784543 C15orf22 23423 15 77393241 NM_007364 NP_031390 A/G D86N plus 4970899 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 107 by freq 15q24-q25 integral type I protein 26463 rs3784587 TRPM1 4308 15 29081865 NM_002420 NP_002411 C/G R1352G plus 4970943 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.02 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26464 rs3784587 TRPM1 4308 15 29081865 NM_002420 NP_002411 C/G R1352G plus 4970943 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26465 rs3784587 TRPM1 4308 15 29081865 NM_002420 NP_002411 C/G R1352G plus 24138082 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26466 rs3784587 TRPM1 4308 15 29081865 NM_002420 NP_002411 C/G R1352G plus 24138082 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26467 rs3784587 TRPM1 4308 15 29081865 NM_002420 NP_002411 C/G R1352G plus 24138082 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26468 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.06 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26469 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26470 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 902 AFFY Caucasian 24 0.17 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26471 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 903 AFFY Asian 12 0.08 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26472 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 904 AFFY CEPH 12 0.33 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26473 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 4970944 905 AFFY PDpanel 48 0.1 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26474 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 24138083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26475 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 24138083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26476 rs3784588 TRPM1 4308 15 29081946 NM_002420 NP_002411 C/T V1325I plus 24138083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26477 rs3784589 TRPM1 4308 15 29082006 NM_002420 NP_002411 A/C E1305X plus 4970945 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.03 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26478 rs3784589 TRPM1 4308 15 29082006 NM_002420 NP_002411 A/C E1305X plus 10765591 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26479 rs3784589 TRPM1 4308 15 29082006 NM_002420 NP_002411 A/C E1305X plus 23661355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26480 rs3784589 TRPM1 4308 15 29082006 NM_002420 NP_002411 A/C E1305X plus 23661355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26481 rs3784589 TRPM1 4308 15 29082006 NM_002420 NP_002411 A/C E1305X plus 23661355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 26482 rs3784634 VPS13C 54832 15 60046929 NM_017684 NP_060154 A/G R931K minus 4970990 738 YUSUKE JBIC-ALLELE Japanese (752) 1110 0.13 123 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 26483 rs3784634 VPS13C 54832 15 60046929 NM_017684 NP_060154 A/G R931K minus 6588489 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.47 123 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 26484 rs3784634 VPS13C 54832 15 60046929 NM_017684 NP_060154 A/G R931K minus 24719040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 26485 rs3784634 VPS13C 54832 15 60046929 NM_017684 NP_060154 A/G R931K minus 24719040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 26486 rs3784634 VPS13C 54832 15 60046929 NM_017684 NP_060154 A/G R931K minus 24719040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 15q21.3 vacuolar protein sorting 13C (yeast) 26487 rs3784635 VPS13C 54832 15 60042281 NM_017684 NP_060154 A/G I1089V minus 24225361 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 26488 rs3784635 VPS13C 54832 15 60042281 NM_017684 NP_060154 A/G I1089V minus 24225361 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 26489 rs3784635 VPS13C 54832 15 60042281 NM_017684 NP_060154 A/G I1089V minus 24225361 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 26490 rs3785522 TBCD 6904 17 78489222 NM_005993 NP_005984 A/G E1097G plus 24597721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by cluster,freq" 17q25.3 tubulin-specific chaperone d 26491 rs3785522 TBCD 6904 17 78489222 NM_005993 NP_005984 A/G E1097G plus 24597721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "by cluster,freq" 17q25.3 tubulin-specific chaperone d 26492 rs3785522 TBCD 6904 17 78489222 NM_005993 NP_005984 A/G E1097G plus 24597721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 17q25.3 tubulin-specific chaperone d 26493 rs3786417 CABYR 26256 18 19989684 NM_012189 NP_036321 C/T T74M plus 4972776 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26494 rs3786417 CABYR 26256 18 19989684 NM_012189 NP_036321 C/T T74M plus 4972776 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26495 rs3786417 CABYR 26256 18 19989684 NM_012189 NP_036321 C/T T74M plus 24218116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26496 rs3786417 CABYR 26256 18 19989684 NM_012189 NP_036321 C/T T74M plus 24218116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26497 rs3786417 CABYR 26256 18 19989684 NM_012189 NP_036321 C/T T74M plus 24218116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26498 rs3786417 CABYR 26256 18 19989684 NM_138644 NP_619585 C/T T74M plus 4972776 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26499 rs3786417 CABYR 26256 18 19989684 NM_138644 NP_619585 C/T T74M plus 4972776 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26500 rs3786417 CABYR 26256 18 19989684 NM_138644 NP_619585 C/T T74M plus 24218116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26501 rs3786417 CABYR 26256 18 19989684 NM_138644 NP_619585 C/T T74M plus 24218116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26502 rs3786417 CABYR 26256 18 19989684 NM_138644 NP_619585 C/T T74M plus 24218116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26503 rs3786417 CABYR 26256 18 19989684 NM_153768 NP_722452 C/T T56M plus 4972776 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26504 rs3786417 CABYR 26256 18 19989684 NM_153768 NP_722452 C/T T56M plus 4972776 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26505 rs3786417 CABYR 26256 18 19989684 NM_153768 NP_722452 C/T T56M plus 24218116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26506 rs3786417 CABYR 26256 18 19989684 NM_153768 NP_722452 C/T T56M plus 24218116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26507 rs3786417 CABYR 26256 18 19989684 NM_153768 NP_722452 C/T T56M plus 24218116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26508 rs3786417 CABYR 26256 18 19989684 NM_153769 NP_722453 C/T T74M plus 4972776 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26509 rs3786417 CABYR 26256 18 19989684 NM_153769 NP_722453 C/T T74M plus 4972776 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26510 rs3786417 CABYR 26256 18 19989684 NM_153769 NP_722453 C/T T74M plus 24218116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26511 rs3786417 CABYR 26256 18 19989684 NM_153769 NP_722453 C/T T74M plus 24218116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26512 rs3786417 CABYR 26256 18 19989684 NM_153769 NP_722453 C/T T74M plus 24218116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26513 rs3786417 CABYR 26256 18 19989684 NM_153770 NP_722454 C/T T74M plus 4972776 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.15 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26514 rs3786417 CABYR 26256 18 19989684 NM_153770 NP_722454 C/T T74M plus 4972776 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26515 rs3786417 CABYR 26256 18 19989684 NM_153770 NP_722454 C/T T74M plus 24218116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26516 rs3786417 CABYR 26256 18 19989684 NM_153770 NP_722454 C/T T74M plus 24218116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26517 rs3786417 CABYR 26256 18 19989684 NM_153770 NP_722454 C/T T74M plus 24218116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq" 18q11.2 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 26518 rs3786490 ZNF83 55769 19 57809421 NM_018300 NP_060770 A/G T70I plus 4972849 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.04 123 "by cluster,freq" 19q13.3 zinc finger protein 83 (HPF1) 26519 rs3786490 ZNF83 55769 19 57809421 NM_018300 NP_060770 A/G T70I plus 24114941 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.3 zinc finger protein 83 (HPF1) 26520 rs3786490 ZNF83 55769 19 57809421 NM_018300 NP_060770 A/G T70I plus 24114941 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19q13.3 zinc finger protein 83 (HPF1) 26521 rs3786490 ZNF83 55769 19 57809421 NM_018300 NP_060770 A/G T70I plus 24114941 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 19q13.3 zinc finger protein 83 (HPF1) 26522 rs3786734 PPP1R15A 23645 19 54068396 NM_014330 NP_055145 C/T A32T minus 4973095 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.1 120 "by cluster,freq" 19q13.2 "protein phosphatase 1, regulatory (inhibitor) subunit 15A" 26523 rs3789044 LRRN5 10446 1 201320758 NM_006338 NP_006329 C/T P7L minus 4975414 738 YUSUKE JBIC-ALLELE Japanese (752) 900 0.39 107 by freq 1q32.1 leucine rich repeat neuronal 5 26524 rs3789044 LRRN5 10446 1 201320758 NM_201630 NP_963924 C/T P7L minus 4975414 738 YUSUKE JBIC-ALLELE Japanese (752) 900 0.39 107 by freq 1q32.1 leucine rich repeat neuronal 5 26525 rs3790267 SLC24A3 57419 20 19513693 NM_020689 NP_065740 A/G V168I plus 4976637 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.13 123 "by cluster,freq" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 26526 rs3790267 SLC24A3 57419 20 19513693 NM_020689 NP_065740 A/G V168I plus 24073176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 26527 rs3790267 SLC24A3 57419 20 19513693 NM_020689 NP_065740 A/G V168I plus 24073176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 26528 rs3790267 SLC24A3 57419 20 19513693 NM_020689 NP_065740 A/G V168I plus 24073176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 20p13 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3" 26529 rs3790549 WARS2 10352 1 119287860 NM_015836 NP_056651 C/G A267P plus 4976919 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.17 123 "by cluster,freq" 1p13.3-p13.1 tryptophanyl tRNA synthetase 2 (mitochondrial) 26530 rs3790549 WARS2 10352 1 119287860 NM_015836 NP_056651 C/G A267P plus 24141868 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 1p13.3-p13.1 tryptophanyl tRNA synthetase 2 (mitochondrial) 26531 rs3790549 WARS2 10352 1 119287860 NM_015836 NP_056651 C/G A267P plus 24141868 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 1p13.3-p13.1 tryptophanyl tRNA synthetase 2 (mitochondrial) 26532 rs3790549 WARS2 10352 1 119287860 NM_015836 NP_056651 C/G A267P plus 24141868 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 "by cluster,freq" 1p13.3-p13.1 tryptophanyl tRNA synthetase 2 (mitochondrial) 26533 rs3792234 SBLF 11037 2 48721244 NM_006873 NP_006864 G/T Q607H plus 4978606 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.38 123 "by doubleHit,freq,cluster" 2p16.3 stoned B-like factor 26534 rs3792234 SBLF 11037 2 48721244 NM_006873 NP_006864 G/T Q607H plus 24156954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 2p16.3 stoned B-like factor 26535 rs3792234 SBLF 11037 2 48721244 NM_006873 NP_006864 G/T Q607H plus 24156954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 2p16.3 stoned B-like factor 26536 rs3792234 SBLF 11037 2 48721244 NM_006873 NP_006864 G/T Q607H plus 24156954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 2p16.3 stoned B-like factor 26537 rs3792234 SALF 286749 2 48721244 NM_172311 NP_758515 G/T Q607H plus 4978606 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.38 123 "by doubleHit,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26538 rs3792234 SALF 286749 2 48721244 NM_172311 NP_758515 G/T Q607H plus 24156954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26539 rs3792234 SALF 286749 2 48721244 NM_172311 NP_758515 G/T Q607H plus 24156954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26540 rs3792234 SALF 286749 2 48721244 NM_172311 NP_758515 G/T Q607H plus 24156954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26541 rs3792245 ALF 11036 2 48783881 NM_006872 NP_006863 C/T A121V plus 4978617 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 HapMap 2p21 TFIIA-alpha/beta-like factor 26542 rs3792245 ALF 11036 2 48783881 NM_006872 NP_006863 C/T A121V plus 4978617 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p21 TFIIA-alpha/beta-like factor 26543 rs3792245 ALF 11036 2 48783881 NM_172196 NP_751946 C/T A121V plus 4978617 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 HapMap 2p21 TFIIA-alpha/beta-like factor 26544 rs3792245 ALF 11036 2 48783881 NM_172196 NP_751946 C/T A121V plus 4978617 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p21 TFIIA-alpha/beta-like factor 26545 rs3792245 SALF 286749 2 48783881 NM_172311 NP_758515 C/T A825V plus 4978617 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.01 107 HapMap 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26546 rs3792245 SALF 286749 2 48783881 NM_172311 NP_758515 C/T A825V plus 4978617 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p16.3 stoned B/TFIIA-alpha/beta-like factor 26547 rs3792332 HHLA2 11148 3 109563907 NM_007072 NP_009003 G/T N344K minus 23260130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 3q13.13 HERV-H LTR-associating 2 26548 rs3792332 HHLA2 11148 3 109563907 NM_007072 NP_009003 G/T N344K minus 23260130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 3q13.13 HERV-H LTR-associating 2 26549 rs3792332 HHLA2 11148 3 109563907 NM_007072 NP_009003 G/T N344K minus 23260130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3q13.13 HERV-H LTR-associating 2 26550 rs3792646 C7 730 5 40991410 NM_000587 NP_000578 A/C K420Q plus 4979020 738 YUSUKE JBIC-ALLELE Japanese (752) 918 0.04 107 HapMap 5p13 complement component 7 26551 rs3792646 C7 730 5 40991410 NM_000587 NP_000578 A/C K420Q plus 4979020 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5p13 complement component 7 26552 rs3792683 MTP 4547 4 100868081 NM_000253 NP_000244 A/G N166S plus 4979057 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.23 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 26553 rs3792683 MTP 4547 4 100868081 NM_000253 NP_000244 A/G N166S plus 23331396 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 26554 rs3792683 MTP 4547 4 100868081 NM_000253 NP_000244 A/G N166S plus 23331396 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 26555 rs3792683 MTP 4547 4 100868081 NM_000253 NP_000244 A/G N166S plus 23331396 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 26556 rs3792687 ATP8A1 10396 4 42350029 NM_006095 NP_006086 C/T T673M minus 4979061 738 YUSUKE JBIC-ALLELE Japanese (752) 930 0.07 123 "HapMap,freq" 4p14-p12 "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1" 26557 rs3792687 ATP8A1 10396 4 42350029 NM_006095 NP_006086 C/T T673M minus 4979061 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 4p14-p12 "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1" 26558 rs3792687 ATP8A1 10396 4 42350029 NM_006095 NP_006086 C/T T673M minus 24172028 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 4p14-p12 "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1" 26559 rs3792687 ATP8A1 10396 4 42350029 NM_006095 NP_006086 C/T T673M minus 24172028 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 4p14-p12 "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1" 26560 rs3792687 ATP8A1 10396 4 42350029 NM_006095 NP_006086 C/T T673M minus 24172028 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 4p14-p12 "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1" 26561 rs3793524 PTPN3 5774 9 109299029 NM_002829 NP_002820 C/G A90P minus 4979898 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.37 123 "HapMap,freq,cluster" 9q31 "protein tyrosine phosphatase, non-receptor type 3" 26562 rs3793524 PTPN3 5774 9 109299029 NM_002829 NP_002820 C/G A90P minus 4979898 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,freq,cluster" 9q31 "protein tyrosine phosphatase, non-receptor type 3" 26563 rs3793524 PTPN3 5774 9 109299029 NM_002829 NP_002820 C/G A90P minus 23785111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,freq,cluster" 9q31 "protein tyrosine phosphatase, non-receptor type 3" 26564 rs3793524 PTPN3 5774 9 109299029 NM_002829 NP_002820 C/G A90P minus 23785111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,freq,cluster" 9q31 "protein tyrosine phosphatase, non-receptor type 3" 26565 rs3793524 PTPN3 5774 9 109299029 NM_002829 NP_002820 C/G A90P minus 23785111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,freq,cluster" 9q31 "protein tyrosine phosphatase, non-receptor type 3" 26566 rs3793733 ADARB2 105 10 1411326 NM_018702 NP_061172 A/G A44T minus 4980107 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0.14 123 "by cluster,freq" 10p15.3 "adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)" 26567 rs3793733 ADARB2 105 10 1411326 NM_018702 NP_061172 A/G A44T minus 24146789 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10p15.3 "adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)" 26568 rs3793733 ADARB2 105 10 1411326 NM_018702 NP_061172 A/G A44T minus 24146789 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10p15.3 "adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)" 26569 rs3793733 ADARB2 105 10 1411326 NM_018702 NP_061172 A/G A44T minus 24146789 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.1 123 "by cluster,freq" 10p15.3 "adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)" 26570 rs3793744 ENTPD1 953 10 97597256 NM_001776 NP_001767 C/T V293I minus 4980118 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0 123 "by cluster,freq" 10q24 ectonucleoside triphosphate diphosphohydrolase 1 26571 rs3793744 ENTPD1 953 10 97597256 NM_001776 NP_001767 C/T V293I minus 23712032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24 ectonucleoside triphosphate diphosphohydrolase 1 26572 rs3793744 ENTPD1 953 10 97597256 NM_001776 NP_001767 C/T V293I minus 23712032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 10q24 ectonucleoside triphosphate diphosphohydrolase 1 26573 rs3793744 ENTPD1 953 10 97597256 NM_001776 NP_001767 C/T V293I minus 23712032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24 ectonucleoside triphosphate diphosphohydrolase 1 26574 rs3793771 WNT8B 7479 10 102212947 NM_003393 NP_003384 C/G C11S minus 4980145 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.19 123 "by doubleHit,freq,cluster" 10q24 "wingless-type MMTV integration site family, member 8B" 26575 rs3793771 WNT8B 7479 10 102212947 NM_003393 NP_003384 C/G C11S minus 24488585 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 10q24 "wingless-type MMTV integration site family, member 8B" 26576 rs3793771 WNT8B 7479 10 102212947 NM_003393 NP_003384 C/G C11S minus 24488585 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 10q24 "wingless-type MMTV integration site family, member 8B" 26577 rs3793771 WNT8B 7479 10 102212947 NM_003393 NP_003384 C/G C11S minus 24488585 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q24 "wingless-type MMTV integration site family, member 8B" 26578 rs3794153 ST5 6764 11 8708465 NM_005418 NP_005409 C/G K316N minus 4980527 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.41 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26579 rs3794153 ST5 6764 11 8708465 NM_005418 NP_005409 C/G K316N minus 16524966 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26580 rs3794153 ST5 6764 11 8708465 NM_005418 NP_005409 C/G K316N minus 24526934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26581 rs3794153 ST5 6764 11 8708465 NM_005418 NP_005409 C/G K316N minus 24526934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26582 rs3794153 ST5 6764 11 8708465 NM_005418 NP_005409 C/G K316N minus 24526934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26583 rs3794153 ST5 6764 11 8708465 NM_213618 NP_998783 C/G K316N minus 4980527 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.41 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26584 rs3794153 ST5 6764 11 8708465 NM_213618 NP_998783 C/G K316N minus 16524966 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26585 rs3794153 ST5 6764 11 8708465 NM_213618 NP_998783 C/G K316N minus 24526934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26586 rs3794153 ST5 6764 11 8708465 NM_213618 NP_998783 C/G K316N minus 24526934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26587 rs3794153 ST5 6764 11 8708465 NM_213618 NP_998783 C/G K316N minus 24526934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 11p15 suppression of tumorigenicity 5 26588 rs3794873 ZNF236 7776 18 72745362 NM_007345 NP_031371 C/T S643G minus 4981248 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 18q22-q23 zinc finger protein 236 26589 rs3794873 ZNF236 7776 18 72745362 NM_007345 NP_031371 C/T S643G minus 24108023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 18q22-q23 zinc finger protein 236 26590 rs3794873 ZNF236 7776 18 72745362 NM_007345 NP_031371 C/T S643G minus 24108023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 18q22-q23 zinc finger protein 236 26591 rs3794873 ZNF236 7776 18 72745362 NM_007345 NP_031371 C/T S643G minus 24108023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 18q22-q23 zinc finger protein 236 26592 rs3795003 USP29 57663 19 62333611 NM_020903 NP_065954 C/T E586K minus 4981378 738 YUSUKE JBIC-ALLELE Japanese (752) 902 0.46 123 "HapMap,doubleHit,freq,cluster" 19q13.43 ubiquitin specific protease 29 26593 rs3795003 USP29 57663 19 62333611 NM_020903 NP_065954 C/T E586K minus 19404203 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,doubleHit,freq,cluster" 19q13.43 ubiquitin specific protease 29 26594 rs3795003 USP29 57663 19 62333611 NM_020903 NP_065954 C/T E586K minus 24225802 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 19q13.43 ubiquitin specific protease 29 26595 rs3795003 USP29 57663 19 62333611 NM_020903 NP_065954 C/T E586K minus 24225802 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 19q13.43 ubiquitin specific protease 29 26596 rs3795003 USP29 57663 19 62333611 NM_020903 NP_065954 C/T E586K minus 24225802 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 19q13.43 ubiquitin specific protease 29 26597 rs3795243 HCAP-G 64151 4 17506259 NM_022346 NP_071741 C/G M581I minus 4981620 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.06 123 "HapMap,freq,cluster" 4p16-p15 chromosome condensation protein G 26598 rs3795243 HCAP-G 64151 4 17506259 NM_022346 NP_071741 C/G M581I minus 4981620 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.11 123 "HapMap,freq,cluster" 4p16-p15 chromosome condensation protein G 26599 rs3795243 HCAP-G 64151 4 17506259 NM_022346 NP_071741 C/G M581I minus 23938123 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 4p16-p15 chromosome condensation protein G 26600 rs3795243 HCAP-G 64151 4 17506259 NM_022346 NP_071741 C/G M581I minus 23938123 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 4p16-p15 chromosome condensation protein G 26601 rs3795243 HCAP-G 64151 4 17506259 NM_022346 NP_071741 C/G M581I minus 23938123 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 4p16-p15 chromosome condensation protein G 26602 rs3795244 ZNF207 7756 17 27716509 NM_003457 NP_003448 G/T A224S plus 4981621 738 YUSUKE JBIC-ALLELE Japanese (752) 914 0.05 107 "HapMap,freq" 17q12 zinc finger protein 207 26603 rs3795244 ZNF207 7756 17 27716509 NM_003457 NP_003448 G/T A224S plus 4981621 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 107 "HapMap,freq" 17q12 zinc finger protein 207 26604 rs3795251 ASB17 127247 1 76109993 NM_080868 NP_543144 C/T S2N plus 24275427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p31.1 ankyrin repeat and SOCS box-containing 17 26605 rs3795251 ASB17 127247 1 76109993 NM_080868 NP_543144 C/T S2N plus 24275427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 1p31.1 ankyrin repeat and SOCS box-containing 17 26606 rs3795251 ASB17 127247 1 76109993 NM_080868 NP_543144 C/T S2N plus 24275427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1p31.1 ankyrin repeat and SOCS box-containing 17 26607 rs3795263 ARPM2 140625 1 2962146 NM_080431 NP_536356 A/G G247R plus 4981640 738 YUSUKE JBIC-ALLELE Japanese (752) 1288 0.21 123 "HapMap,freq" 1p36.3 actin-related protein M2 26608 rs3795263 ARPM2 140625 1 2962146 NM_080431 NP_536356 A/G G247R plus 4981640 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,freq" 1p36.3 actin-related protein M2 26609 rs3795263 ARPM2 140625 1 2962146 NM_080431 NP_536356 A/G G247R plus 24241586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,freq" 1p36.3 actin-related protein M2 26610 rs3795263 ARPM2 140625 1 2962146 NM_080431 NP_536356 A/G G247R plus 24241586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 1p36.3 actin-related protein M2 26611 rs3795263 ARPM2 140625 1 2962146 NM_080431 NP_536356 A/G G247R plus 24241586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq" 1p36.3 actin-related protein M2 26612 rs3795299 IL22RA1 58985 1 24192774 NM_021258 NP_067081 C/G R518G minus 4981676 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.25 123 "by doubleHit,freq,cluster" 1p36.11 "interleukin 22 receptor, alpha 1" 26613 rs3795299 IL22RA1 58985 1 24192774 NM_021258 NP_067081 C/G R518G minus 24616886 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 1p36.11 "interleukin 22 receptor, alpha 1" 26614 rs3795299 IL22RA1 58985 1 24192774 NM_021258 NP_067081 C/G R518G minus 24616886 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 1p36.11 "interleukin 22 receptor, alpha 1" 26615 rs3795299 IL22RA1 58985 1 24192774 NM_021258 NP_067081 C/G R518G minus 24616886 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1p36.11 "interleukin 22 receptor, alpha 1" 26616 rs3795331 SLAMF8 56833 1 156615756 NM_020125 NP_064510 A/G V129M plus 4981708 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.09 107 by freq 1q23.1 SLAM family member 8 26617 rs3795339 KCNJ10 3766 1 156824584 NM_002241 NP_002232 A/G R271H minus 4981716 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.02 123 "by cluster,freq" 1q22-q23 "potassium inwardly-rectifying channel, subfamily J, member 10" 26618 rs3795339 KCNJ10 3766 1 156824584 NM_002241 NP_002232 A/G R271H minus 23838272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1q22-q23 "potassium inwardly-rectifying channel, subfamily J, member 10" 26619 rs3795339 KCNJ10 3766 1 156824584 NM_002241 NP_002232 A/G R271H minus 23838272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q22-q23 "potassium inwardly-rectifying channel, subfamily J, member 10" 26620 rs3795339 KCNJ10 3766 1 156824584 NM_002241 NP_002232 A/G R271H minus 23838272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1q22-q23 "potassium inwardly-rectifying channel, subfamily J, member 10" 26621 rs3795424 SYNCOILIN 81493 1 32829737 NM_030786 NP_110413 A/C E21A minus 4981801 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1478 0.13 107 by freq 1p34.3-p33 intermediate filament protein syncoilin 26622 rs3795595 GPR37L1 9283 1 198824017 NM_004767 NP_004758 A/G G90D plus 4981972 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.21 123 "by cluster,freq" 1q32.1 G-protein coupled receptor 37 like 1 26623 rs3795595 GPR37L1 9283 1 198824017 NM_004767 NP_004758 A/G G90D plus 23167822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 1q32.1 G-protein coupled receptor 37 like 1 26624 rs3795595 GPR37L1 9283 1 198824017 NM_004767 NP_004758 A/G G90D plus 23167822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 1q32.1 G-protein coupled receptor 37 like 1 26625 rs3795595 GPR37L1 9283 1 198824017 NM_004767 NP_004758 A/G G90D plus 23167822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 1q32.1 G-protein coupled receptor 37 like 1 26626 rs3795677 FMN2 56776 1 236818775 XM_371352 XP_371352 A/G R1644H plus 4982054 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1310 0.49 123 "by doubleHit,freq,cluster" 1q43 formin 2 26627 rs3795677 FMN2 56776 1 236818775 XM_371352 XP_371352 A/G R1644H plus 24279668 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q43 formin 2 26628 rs3795677 FMN2 56776 1 236818775 XM_371352 XP_371352 A/G R1644H plus 24279668 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1q43 formin 2 26629 rs3795677 FMN2 56776 1 236818775 XM_371352 XP_371352 A/G R1644H plus 24279668 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 1q43 formin 2 26630 rs3795783 OBSCN 84033 1 224774446 NM_052843 NP_443075 A/G R2529Q plus 4982160 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1482 0.33 107 by freq 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 26631 rs3795785 OBSCN 84033 1 224776605 NM_052843 NP_443075 C/T R2812W plus 4982162 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.31 107 by freq 1q42 "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" 26632 rs3795832 TA-LRRP 23507 1 89761636 NM_015350 NP_056165 C/T R469H minus 4982209 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1314 0.09 123 "by cluster,freq" 1p22.2 T-cell activation leucine repeat-rich protein 26633 rs3795832 TA-LRRP 23507 1 89761636 NM_015350 NP_056165 C/T R469H minus 23849154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p22.2 T-cell activation leucine repeat-rich protein 26634 rs3795832 TA-LRRP 23507 1 89761636 NM_015350 NP_056165 C/T R469H minus 23849154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p22.2 T-cell activation leucine repeat-rich protein 26635 rs3795832 TA-LRRP 23507 1 89761636 NM_015350 NP_056165 C/T R469H minus 23849154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1p22.2 T-cell activation leucine repeat-rich protein 26636 rs3795947 KBTBD9 114818 2 23837840 XM_496546 XP_496546 A/G V5755I plus 4982324 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p24.1 kelch repeat and BTB (POZ) domain containing 9 26637 rs3796028 TNS 7145 2 218520608 NM_022648 NP_072174 A/G R1004W plus 4982405 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.45 123 "HapMap,freq" 2q35-q36 tensin 26638 rs3796028 TNS 7145 2 218520608 NM_022648 NP_072174 A/G R1004W plus 4982405 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,freq" 2q35-q36 tensin 26639 rs3796028 TNS 7145 2 218520608 NM_022648 NP_072174 A/G R1004W plus 24298312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,freq" 2q35-q36 tensin 26640 rs3796028 TNS 7145 2 218520608 NM_022648 NP_072174 A/G R1004W plus 24298312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,freq" 2q35-q36 tensin 26641 rs3796028 TNS 7145 2 218520608 NM_022648 NP_072174 A/G R1004W plus 24298312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,freq" 2q35-q36 tensin 26642 rs3796118 ANKMY1 51281 2 241183505 NM_016552 NP_057636 A/T D451V plus 4982495 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.03 107 by freq 2q37.3 ankyrin repeat and MYND domain containing 1 26643 rs3796118 ANKMY1 51281 2 241183505 NM_017844 NP_060314 A/T D310V plus 4982495 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.03 107 by freq 2q37.3 ankyrin repeat and MYND domain containing 1 26644 rs3796191 FTHFD 10840 3 127355082 NM_012190 NP_036322 A/G L254P plus 4982568 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.04 111 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 26645 rs3796191 FTHFD 10840 3 127355082 NM_144776 NP_658989 A/G L254P plus 4982568 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.04 111 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 26646 rs3796241 USH3A 7401 3 152173174 NM_174878 NP_777367 A/T K7I minus 4982618 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.01 107 by freq 3q25 Usher syndrome 3A 26647 rs3796375 FYCO1 79443 3 45983794 NM_024513 NP_078789 A/G A679V plus 4982752 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1476 0.41 120 "by cluster,freq" 3p21.32 FYVE and coiled-coil domain containing 1 26648 rs3796381 ADAMTS9 56999 3 64502052 NM_182920 NP_891550 C/G E1791Q minus 4982758 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.01 107 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 26649 rs3796504 SLAMF1 6504 1 157393622 NM_003037 NP_003028 G/T P333T plus 4982881 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.02 123 by freq 1q22-q23 signaling lymphocytic activation molecule family member 1 26650 rs3796504 SLAMF1 6504 1 157393622 NM_003037 NP_003028 G/T P333T plus 24242190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1q22-q23 signaling lymphocytic activation molecule family member 1 26651 rs3796504 SLAMF1 6504 1 157393622 NM_003037 NP_003028 G/T P333T plus 24242190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q22-q23 signaling lymphocytic activation molecule family member 1 26652 rs3796504 SLAMF1 6504 1 157393622 NM_003037 NP_003028 G/T P333T plus 24242190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q22-q23 signaling lymphocytic activation molecule family member 1 26653 rs3796529 REST 5978 4 57638342 NM_005612 NP_005603 A/G P797L minus 20220158 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 "HapMap,doubleHit,cluster" 4q12 RE1-silencing transcription factor 26654 rs3796543 NRPS998 132949 4 57062276 NM_181806 NP_861522 A/G K368R minus 4982920 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1314 0.24 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26655 rs3796543 NRPS998 132949 4 57062276 NM_181806 NP_861522 A/G K368R minus 23966710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26656 rs3796543 NRPS998 132949 4 57062276 NM_181806 NP_861522 A/G K368R minus 23966710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26657 rs3796543 NRPS998 132949 4 57062276 NM_181806 NP_861522 A/G K368R minus 23966710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26658 rs3796544 NRPS998 132949 4 57056605 NM_181806 NP_861522 C/T A747V minus 24649391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26659 rs3796544 NRPS998 132949 4 57056605 NM_181806 NP_861522 C/T A747V minus 24649391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26660 rs3796544 NRPS998 132949 4 57056605 NM_181806 NP_861522 C/T A747V minus 24649391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 4q12 2-aminoadipic 6-semialdehyde dehydrogenase 26661 rs3796622 SLC26A1 10861 4 972890 NM_022042 NP_071325 C/T Q556R plus 4982999 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 121 "HapMap,doubleHit,freq,cluster" 4p16.3 "solute carrier family 26 (sulfate transporter), member 1" 26662 rs3796622 SLC26A1 10861 4 972890 NM_022042 NP_071325 C/T Q556R plus 4982999 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 4p16.3 "solute carrier family 26 (sulfate transporter), member 1" 26663 rs3796622 SLC26A1 10861 4 972890 NM_213613 NP_998778 C/T Q556R plus 4982999 738 YUSUKE JBIC-ALLELE Japanese (752) 1482 0.3 121 "HapMap,doubleHit,freq,cluster" 4p16.3 "solute carrier family 26 (sulfate transporter), member 1" 26664 rs3796622 SLC26A1 10861 4 972890 NM_213613 NP_998778 C/T Q556R plus 4982999 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 4p16.3 "solute carrier family 26 (sulfate transporter), member 1" 26665 rs3796703 ENAM 10117 4 71874349 NM_031889 NP_114095 C/T P724L plus 4983080 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1256 0.07 107 by freq 4q21.1 enamelin 26666 rs3796704 ENAM 10117 4 71874466 NM_031889 NP_114095 A/G R763Q plus 23360031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4q21.1 enamelin 26667 rs3796704 ENAM 10117 4 71874466 NM_031889 NP_114095 A/G R763Q plus 23360031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 4q21.1 enamelin 26668 rs3796704 ENAM 10117 4 71874466 NM_031889 NP_114095 A/G R763Q plus 23360031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 4q21.1 enamelin 26669 rs3796706 NYD-SP26 85438 4 71381742 NM_033122 NP_149113 G/T K76Q minus 4983083 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.02 107 by freq 4q13.3 testis development protein NYD-SP26 26670 rs3797036 SEC31L1 22872 4 84142760 NM_014933 NP_055748 A/C N456K plus 4983413 738 YUSUKE JBIC-ALLELE Japanese (752) 934 0.03 107 by freq 4q21.3 SEC31-like 1 (S. cerevisiae) 26671 rs3797036 SEC31L1 22872 4 84142760 NM_016211 NP_057295 A/C N456K plus 4983413 738 YUSUKE JBIC-ALLELE Japanese (752) 934 0.03 107 by freq 4q21.3 SEC31-like 1 (S. cerevisiae) 26672 rs3797799 LNPEP 4012 5 96340834 NM_005575 NP_005566 A/G S86P minus 4984179 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5q15 leucyl/cystinyl aminopeptidase 26673 rs3799268 GCM1 8521 6 53101442 NM_003643 NP_003634 A/G D278N minus 4985651 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 107 HapMap 6p21-p12 glial cells missing homolog 1 (Drosophila) 26674 rs3799277 TDRD6 221400 6 46765016 XM_166443 XP_166443 C/T T398A minus 4985660 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.1 121 "by cluster,freq" 6p21.1 tudor domain containing 6 26675 rs3800298 TTBK1 84630 6 43360007 XM_166453 XP_166453 C/T L1256S plus 4986681 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1304 0.35 107 by freq 6p21.1 tau tubulin kinase 1 26676 rs3800324 PGBD1 84547 6 28372660 NM_032507 NP_115896 A/G G244E plus 23916026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26677 rs3800324 PGBD1 84547 6 28372660 NM_032507 NP_115896 A/G G244E plus 23916026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26678 rs3800324 PGBD1 84547 6 28372660 NM_032507 NP_115896 A/G G244E plus 23916026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26679 rs3800325 PGBD1 84547 6 28372671 NM_032507 NP_115896 C/G Q248E plus 23290726 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26680 rs3800325 PGBD1 84547 6 28372671 NM_032507 NP_115896 C/G Q248E plus 23290726 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26681 rs3800325 PGBD1 84547 6 28372671 NM_032507 NP_115896 C/G Q248E plus 23290726 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26682 rs3800326 PGBD1 84547 6 28372696 NM_032507 NP_115896 C/T P256L plus 4986709 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0.09 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26683 rs3800326 PGBD1 84547 6 28372696 NM_032507 NP_115896 C/T P256L plus 23290731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26684 rs3800326 PGBD1 84547 6 28372696 NM_032507 NP_115896 C/T P256L plus 23290731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26685 rs3800326 PGBD1 84547 6 28372696 NM_032507 NP_115896 C/T P256L plus 23290731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.33 piggyBac transposable element derived 1 26686 rs3800381 SCUBE3 222663 6 35317331 NM_152753 NP_689966 A/G S410L minus 4986764 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 by freq 6p21.3 "signal peptide, CUB domain, EGF-like 3" 26687 rs3800381 SCUBE3 222663 6 35317331 NM_152753 NP_689966 A/G S410L minus 24170054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.3 "signal peptide, CUB domain, EGF-like 3" 26688 rs3800381 SCUBE3 222663 6 35317331 NM_152753 NP_689966 A/G S410L minus 24170054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 "signal peptide, CUB domain, EGF-like 3" 26689 rs3800381 SCUBE3 222663 6 35317331 NM_152753 NP_689966 A/G S410L minus 24170054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 "signal peptide, CUB domain, EGF-like 3" 26690 rs3800791 ASB10 136371 7 150310894 NM_080871 NP_543147 A/G R415C plus 4987175 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1268 0.13 107 by freq 7q36.1 ankyrin repeat and SOCS box-containing 10 26691 rs3800939 LRRC17 10234 7 102168666 NM_005824 NP_005815 C/T K119E minus 24014419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 26692 rs3800939 LRRC17 10234 7 102168666 NM_005824 NP_005815 C/T K119E minus 24014419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 26693 rs3800939 LRRC17 10234 7 102168666 NM_005824 NP_005815 C/T K119E minus 24014419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 7q22.1 leucine rich repeat containing 17 26694 rs3800952 GAL3ST4 79690 7 99402605 NM_024637 NP_078913 A/G R353Q minus 4987337 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1484 0.07 107 by freq 7q22 galactose-3-O-sulfotransferase 4 26695 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 4987347 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1086 0.21 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26696 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 16336072 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26697 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 16336072 902 AFFY Caucasian 22 0.14 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26698 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 16336072 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26699 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 16336072 904 AFFY CEPH 12 0.25 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26700 rs3800962 PRPS1L1 221823 7 17839809 NM_175886 NP_787082 G/T E279D minus 16336072 905 AFFY PDpanel 48 0.35 123 "by doubleHit,freq,cluster" 7p21.1 phosphoribosyl pyrophosphate synthetase 1-like 1 26701 rs3801237 CDC2L5 8621 7 39907377 NM_003718 NP_003709 A/G R1366H plus 4987622 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1504 0.01 107 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 26702 rs3801237 CDC2L5 8621 7 39907377 NM_031267 NP_112557 A/G R1306H plus 4987622 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1504 0.01 107 by freq 7p13 cell division cycle 2-like 5 (cholinesterase-related cell division controller) 26703 rs3801295 LMTK2 22853 7 97467609 NM_014916 NP_055731 A/G D1061N plus 4987680 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0.03 107 by freq 7q22.1 lemur tyrosine kinase 2 26704 rs3802163 NFKBIL2 4796 8 145631351 NM_013432 NP_038460 A/G H796Y plus 4988549 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 26705 rs3802264 ZHX2 22882 8 124035266 NM_014943 NP_055758 A/G G779S plus 23991981 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 8q24.13 zinc fingers and homeoboxes 2 26706 rs3802264 ZHX2 22882 8 124035266 NM_014943 NP_055758 A/G G779S plus 23991981 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 8q24.13 zinc fingers and homeoboxes 2 26707 rs3802264 ZHX2 22882 8 124035266 NM_014943 NP_055758 A/G G779S plus 23991981 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 8q24.13 zinc fingers and homeoboxes 2 26708 rs3802384 FGD3 89846 9 92848003 NM_033086 NP_149077 A/G V275I plus 4988770 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 9q22 "FGD1 family, member 3" 26709 rs3802384 FGD3 89846 9 92848003 NM_033086 NP_149077 A/G V275I plus 24018985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q22 "FGD1 family, member 3" 26710 rs3802384 FGD3 89846 9 92848003 NM_033086 NP_149077 A/G V275I plus 24018985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 9q22 "FGD1 family, member 3" 26711 rs3802384 FGD3 89846 9 92848003 NM_033086 NP_149077 A/G V275I plus 24018985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 9q22 "FGD1 family, member 3" 26712 rs3802526 MASTL 84930 10 27499752 NM_032844 NP_116233 C/G P620A minus 4988912 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1312 0.27 107 by freq 10p12.1 microtubule associated serine/threonine kinase-like 26713 rs3802757 GYLTL1B 120071 11 45904939 NM_152312 NP_689525 A/T H422Q minus 4989143 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 11p11.2 glycosyltransferase-like 1B 26714 rs3802799 NAV2 89797 11 20022249 NM_145117 NP_660093 G/T E1018D plus 4989185 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26715 rs3802799 NAV2 89797 11 20022249 NM_145117 NP_660093 G/T E1018D plus 4989185 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.48 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26716 rs3802799 NAV2 89797 11 20022249 NM_145117 NP_660093 G/T E1018D plus 24103413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26717 rs3802799 NAV2 89797 11 20022249 NM_145117 NP_660093 G/T E1018D plus 24103413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26718 rs3802799 NAV2 89797 11 20022249 NM_145117 NP_660093 G/T E1018D plus 24103413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26719 rs3802799 NAV2 89797 11 20022249 NM_182964 NP_892009 G/T E1041D plus 4989185 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26720 rs3802799 NAV2 89797 11 20022249 NM_182964 NP_892009 G/T E1041D plus 4989185 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.48 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26721 rs3802799 NAV2 89797 11 20022249 NM_182964 NP_892009 G/T E1041D plus 24103413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26722 rs3802799 NAV2 89797 11 20022249 NM_182964 NP_892009 G/T E1041D plus 24103413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26723 rs3802799 NAV2 89797 11 20022249 NM_182964 NP_892009 G/T E1041D plus 24103413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26724 rs3802800 NAV2 89797 11 20022355 NM_145117 NP_660093 C/G P1054A plus 4989186 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26725 rs3802800 NAV2 89797 11 20022355 NM_145117 NP_660093 C/G P1054A plus 23605473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26726 rs3802800 NAV2 89797 11 20022355 NM_145117 NP_660093 C/G P1054A plus 23605473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26727 rs3802800 NAV2 89797 11 20022355 NM_145117 NP_660093 C/G P1054A plus 23605473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.03 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26728 rs3802800 NAV2 89797 11 20022355 NM_182964 NP_892009 C/G P1077A plus 4989186 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.05 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26729 rs3802800 NAV2 89797 11 20022355 NM_182964 NP_892009 C/G P1077A plus 23605473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26730 rs3802800 NAV2 89797 11 20022355 NM_182964 NP_892009 C/G P1077A plus 23605473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26731 rs3802800 NAV2 89797 11 20022355 NM_182964 NP_892009 C/G P1077A plus 23605473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.03 123 "by doubleHit,freq,cluster" 11p15.1 neuron navigator 2 26732 rs3802998 PYM 84305 12 54582342 NM_032345 NP_115721 C/G E66Q minus 4989384 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.03 107 by freq 12q13.13 PYM protein 26733 rs3803002 ABCB9 23457 12 121969302 NM_019624 NP_062570 A/G V121M minus 4989388 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.04 110 "by cluster,freq" 12q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" 26734 rs3803002 ABCB9 23457 12 121969302 NM_019625 NP_062571 A/G V121M minus 4989388 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.04 110 "by cluster,freq" 12q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" 26735 rs3803002 ABCB9 23457 12 121969302 NM_203444 NP_982269 A/G V121M minus 4989388 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.04 110 "by cluster,freq" 12q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" 26736 rs3803002 ABCB9 23457 12 121969302 NM_203445 NP_982270 A/G V121M minus 4989388 738 YUSUKE JBIC-ALLELE Japanese (752) 1280 0.04 110 "by cluster,freq" 12q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" 26737 rs3803036 PTPRR 5801 12 69425931 NM_002849 NP_002840 A/G K314R minus 4989422 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26738 rs3803036 PTPRR 5801 12 69425931 NM_002849 NP_002840 A/G K314R minus 23431787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26739 rs3803036 PTPRR 5801 12 69425931 NM_002849 NP_002840 A/G K314R minus 23431787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26740 rs3803036 PTPRR 5801 12 69425931 NM_002849 NP_002840 A/G K314R minus 23431787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26741 rs3803036 PTPRR 5801 12 69425931 NM_130846 NP_570897 A/G K69R minus 4989422 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26742 rs3803036 PTPRR 5801 12 69425931 NM_130846 NP_570897 A/G K69R minus 23431787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26743 rs3803036 PTPRR 5801 12 69425931 NM_130846 NP_570897 A/G K69R minus 23431787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26744 rs3803036 PTPRR 5801 12 69425931 NM_130846 NP_570897 A/G K69R minus 23431787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 12q15 "protein tyrosine phosphatase, receptor type, R" 26745 rs3803230 COL4A2 1284 13 109917397 NM_001846 NP_001837 C/G G683A minus 4989616 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1504 0.05 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 26746 rs3803230 COL4A2 1284 13 109917397 NM_001846 NP_001837 C/G G683A minus 24094481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 26747 rs3803230 COL4A2 1284 13 109917397 NM_001846 NP_001837 C/G G683A minus 24094481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 26748 rs3803230 COL4A2 1284 13 109917397 NM_001846 NP_001837 C/G G683A minus 24094481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 26749 rs3803339 TP53BP1 7158 15 41511824 NM_005657 NP_005648 A/G I1174V minus 4989726 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q15-q21 "tumor protein p53 binding protein, 1" 26750 rs3803347 MGA 23269 15 39829318 XM_031689 XP_031689 C/T R2123H minus 4989734 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q15 MAX gene associated 26751 rs3803357 BAHD1 22893 15 38538847 NM_014952 NP_055767 G/T Q298K minus 4989744 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1478 0.16 116 "HapMap,doubleHit,freq,cluster" 15q14 bromo adjacent homology domain containing 1 26752 rs3803357 BAHD1 22893 15 38538847 NM_014952 NP_055767 G/T Q298K minus 10781119 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 116 "HapMap,doubleHit,freq,cluster" 15q14 bromo adjacent homology domain containing 1 26753 rs3803381 CALML4 91860 15 66284687 NM_033429 NP_219501 A/G R28C plus 4989768 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 15q22.31 serologically defined breast cancer antigen NY-BR-20 26754 rs3803405 MIDORI 57538 15 83184644 NM_020778 NP_065829 A/G G579E plus 4989792 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 107 "HapMap,freq" 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 26755 rs3803414 MEGF11 84465 15 63993258 NM_032445 NP_115821 C/T L786F minus 4989801 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 107 "HapMap,freq" 15q22.2 MEGF11 protein 26756 rs3803430 ALDH1A3 220 15 99263338 NM_000693 NP_000684 C/T M386V minus 4989817 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.08 123 "HapMap,freq,cluster" 15q26.3 "aldehyde dehydrogenase 1 family, member A3" 26757 rs3803430 ALDH1A3 220 15 99263338 NM_000693 NP_000684 C/T M386V minus 12343035 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 123 "HapMap,freq,cluster" 15q26.3 "aldehyde dehydrogenase 1 family, member A3" 26758 rs3803430 ALDH1A3 220 15 99263338 NM_000693 NP_000684 C/T M386V minus 23641698 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "HapMap,freq,cluster" 15q26.3 "aldehyde dehydrogenase 1 family, member A3" 26759 rs3803430 ALDH1A3 220 15 99263338 NM_000693 NP_000684 C/T M386V minus 23641698 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 15q26.3 "aldehyde dehydrogenase 1 family, member A3" 26760 rs3803430 ALDH1A3 220 15 99263338 NM_000693 NP_000684 C/T M386V minus 23641698 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq,cluster" 15q26.3 "aldehyde dehydrogenase 1 family, member A3" 26761 rs3803466 MAN2C1 4123 15 73435703 NM_006715 NP_006706 C/T V960I plus 7990596 693 EGP_SNPS PDR90 NIHPDR 162 0.1 123 "HapMap,freq,cluster" 15q11-q13 "mannosidase, alpha, class 2C, member 1" 26762 rs3803466 MAN2C1 4123 15 73435703 NM_006715 NP_006706 C/T V960I plus 7990596 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 15q11-q13 "mannosidase, alpha, class 2C, member 1" 26763 rs3803466 MAN2C1 4123 15 73435703 NM_006715 NP_006706 C/T V960I plus 23997045 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 15q11-q13 "mannosidase, alpha, class 2C, member 1" 26764 rs3803466 MAN2C1 4123 15 73435703 NM_006715 NP_006706 C/T V960I plus 23997045 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q11-q13 "mannosidase, alpha, class 2C, member 1" 26765 rs3803466 MAN2C1 4123 15 73435703 NM_006715 NP_006706 C/T V960I plus 23997045 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 15q11-q13 "mannosidase, alpha, class 2C, member 1" 26766 rs3803646 MLYCD 23417 16 82506191 NM_012213 NP_036345 G/T C321G plus 4990033 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 107 HapMap 16q24 malonyl-CoA decarboxylase 26767 rs3803716 TNRC6 27327 16 24709826 NM_014494 NP_055309 A/G P535S minus 24405143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 16p11.2 trinucleotide repeat containing 6 26768 rs3803716 TNRC6 27327 16 24709826 NM_014494 NP_055309 A/G P535S minus 24405143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 16p11.2 trinucleotide repeat containing 6 26769 rs3803716 TNRC6 27327 16 24709826 NM_014494 NP_055309 A/G P535S minus 24405143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 16p11.2 trinucleotide repeat containing 6 26770 rs3803739 E2-230K 63893 17 71898879 NM_022066 NP_071349 C/T G1207S plus 4990126 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1480 0.31 121 "HapMap,doubleHit,freq,cluster" 17q25.1 likely ortholog of mouse ubiquitin-conjugating enzyme E2-230K 26771 rs3803739 E2-230K 63893 17 71898879 NM_022066 NP_071349 C/T G1207S plus 10862346 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 121 "HapMap,doubleHit,freq,cluster" 17q25.1 likely ortholog of mouse ubiquitin-conjugating enzyme E2-230K 26772 rs3803981 RIN2 54453 20 19899534 NM_018993 NP_061866 A/T S197T plus 8468525 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 121 "HapMap,doubleHit,freq,cluster" 20p11.22 Ras and Rab interactor 2 26773 rs3804010 KRTAP13-2 337959 21 30666181 NM_181621 NP_853652 C/G S74R plus 4990397 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1298 0.05 107 by freq 21q22.1 keratin associated protein 13-2 26774 rs3804076 RFPL1 5988 22 28162091 NM_021026 NP_066306 C/T M98T plus 4990463 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1316 0.12 119 "HapMap,freq,cluster" 22q12.2 ret finger protein-like 1 26775 rs3804076 RFPL1 5988 22 28162091 NM_021026 NP_066306 C/T M98T plus 13354121 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.45 119 "HapMap,freq,cluster" 22q12.2 ret finger protein-like 1 26776 rs3804097 L3MBTL2 83746 22 39925885 NM_031488 NP_113676 A/G I7V plus 4990484 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 22q13.31-q13.33 l(3)mbt-like 2 (Drosophila) 26777 rs3804506 EFHC1 114327 6 52411250 NM_018100 NP_060570 A/G R159W minus 4990894 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.05 116 "by cluster,freq" 6p12.3 EF-hand domain (C-terminal) containing 1 26778 rs3804583 KNSL7 56992 3 44859651 NM_020242 NP_064627 G/T L1206M minus 4990971 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.14 123 "HapMap,freq,cluster" 3p21.32 kinesin-like 7 26779 rs3804583 KNSL7 56992 3 44859651 NM_020242 NP_064627 G/T L1206M minus 14214971 885 TSC-CSHL HapMap-CEPH-30-trios 94 0.49 123 "HapMap,freq,cluster" 3p21.32 kinesin-like 7 26780 rs3804583 KNSL7 56992 3 44859651 NM_020242 NP_064627 G/T L1206M minus 24370583 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.45 123 "HapMap,freq,cluster" 3p21.32 kinesin-like 7 26781 rs3804583 KNSL7 56992 3 44859651 NM_020242 NP_064627 G/T L1206M minus 24370583 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "HapMap,freq,cluster" 3p21.32 kinesin-like 7 26782 rs3804583 KNSL7 56992 3 44859651 NM_020242 NP_064627 G/T L1206M minus 24370583 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 3p21.32 kinesin-like 7 26783 rs3804769 SLC33A1 9197 3 157053977 NM_004733 NP_004724 C/T D171G plus 4991157 738 YUSUKE JBIC-ALLELE Japanese (752) 1478 0.16 123 "HapMap,doubleHit,freq,cluster" 3q25.31 "solute carrier family 33 (acetyl-CoA transporter), member 1" 26784 rs3804769 SLC33A1 9197 3 157053977 NM_004733 NP_004724 C/T D171G plus 19533854 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,freq,cluster" 3q25.31 "solute carrier family 33 (acetyl-CoA transporter), member 1" 26785 rs3804769 SLC33A1 9197 3 157053977 NM_004733 NP_004724 C/T D171G plus 23852209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q25.31 "solute carrier family 33 (acetyl-CoA transporter), member 1" 26786 rs3804769 SLC33A1 9197 3 157053977 NM_004733 NP_004724 C/T D171G plus 23852209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.08 123 "HapMap,doubleHit,freq,cluster" 3q25.31 "solute carrier family 33 (acetyl-CoA transporter), member 1" 26787 rs3804769 SLC33A1 9197 3 157053977 NM_004733 NP_004724 C/T D171G plus 23852209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "HapMap,doubleHit,freq,cluster" 3q25.31 "solute carrier family 33 (acetyl-CoA transporter), member 1" 26788 rs3805466 ERBB2IP 55914 5 65386237 NM_018695 NP_061165 A/G S1112L minus 4991856 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1294 0.25 123 "HapMap,freq,cluster" 5q13.1 erbb2 interacting protein 26789 rs3805466 ERBB2IP 55914 5 65386237 NM_018695 NP_061165 A/G S1112L minus 19640840 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 5q13.1 erbb2 interacting protein 26790 rs3805466 ERBB2IP 55914 5 65386237 NM_018695 NP_061165 A/G S1112L minus 23901330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 5q13.1 erbb2 interacting protein 26791 rs3805466 ERBB2IP 55914 5 65386237 NM_018695 NP_061165 A/G S1112L minus 23901330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 5q13.1 erbb2 interacting protein 26792 rs3805466 ERBB2IP 55914 5 65386237 NM_018695 NP_061165 A/G S1112L minus 23901330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq,cluster" 5q13.1 erbb2 interacting protein 26793 rs3806995 ENPP5 59084 6 46243943 NM_021572 NP_067547 A/C L6I minus 4993390 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1316 0.35 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 26794 rs3806995 ENPP5 59084 6 46243943 NM_021572 NP_067547 A/C L6I minus 24000787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 26795 rs3806995 ENPP5 59084 6 46243943 NM_021572 NP_067547 A/C L6I minus 24000787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 26796 rs3806995 ENPP5 59084 6 46243943 NM_021572 NP_067547 A/C L6I minus 24000787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 26797 rs3807590 TENS1 64759 7 47116145 NM_022748 NP_073585 A/G E794K minus 4993985 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 748 0 107 by freq 7p12.3 tensin-like SH2 domain containing 1 26798 rs3808553 FZD6 8323 8 104406543 NM_003506 NP_003497 G/T M345L minus 4994954 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 26799 rs3808553 FZD6 8323 8 104406543 NM_003506 NP_003497 G/T M345L minus 28459824 549 KYUGEN CP CEPH (78) 156 0.41 123 "HapMap,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 26800 rs3808553 FZD6 8323 8 104406543 NM_003506 NP_003497 G/T M345L minus 28459824 1335 KYUGEN JPK2 Japanese (100) 200 0.43 123 "HapMap,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 26801 rs3808553 FZD6 8323 8 104406543 NM_003506 NP_003497 G/T M345L minus 28459825 549 KYUGEN CP CEPH (78) 156 0.38 123 "HapMap,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 26802 rs3808553 FZD6 8323 8 104406543 NM_003506 NP_003497 G/T M345L minus 28459825 1335 KYUGEN JPK2 Japanese (100) 200 0.44 123 "HapMap,freq,cluster" 8q22.3-q23.1 frizzled homolog 6 (Drosophila) 26803 rs3809045 NOD9 79671 11 118549542 NM_024618 NP_078894 G/T R125L plus 4995446 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 11q23.3 NOD9 protein 26804 rs3809045 NOD9 79671 11 118549542 NM_170722 NP_733840 G/T R125L plus 4995446 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 11q23.3 NOD9 protein 26805 rs3809553 NARG2 79664 15 58529299 NM_024611 NP_078887 C/G E387Q minus 4995954 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 15q21.3 NMDA receptor-regulated gene 2 26806 rs3809835 PITPNM3 83394 17 6347607 NM_031220 NP_112497 A/G A80T minus 24699188 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 17p13 PITPNM family member 3 26807 rs3809835 PITPNM3 83394 17 6347607 NM_031220 NP_112497 A/G A80T minus 24699188 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 17p13 PITPNM family member 3 26808 rs3809835 PITPNM3 83394 17 6347607 NM_031220 NP_112497 A/G A80T minus 24699188 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by doubleHit,freq,cluster" 17p13 PITPNM family member 3 26809 rs3809849 MYBBP1A 10514 17 4405347 NM_014520 NP_055335 C/G Q8E minus 4996251 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.19 116 "by doubleHit,freq,cluster" 17p13.3 MYB binding protein (P160) 1a 26810 rs3809875 SMYD4 114826 17 1650293 NM_052928 NP_443160 C/G P382R minus 4996278 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 107 "HapMap,freq" 17p13.3 SET and MYND domain containing 4 26811 rs3809875 SMYD4 114826 17 1650293 NM_052928 NP_443160 C/G P382R minus 4996278 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1306 0.3 107 "HapMap,freq" 17p13.3 SET and MYND domain containing 4 26812 rs3809970 HAK 115701 18 54355971 NM_052947 NP_443179 A/G G573S minus 24536369 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26813 rs3809970 HAK 115701 18 54355971 NM_052947 NP_443179 A/G G573S minus 24536369 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26814 rs3809970 HAK 115701 18 54355971 NM_052947 NP_443179 A/G G573S minus 24536369 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26815 rs3809972 HAK 115701 18 54355925 NM_052947 NP_443179 C/G R588T minus 24536361 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26816 rs3809972 HAK 115701 18 54355925 NM_052947 NP_443179 C/G R588T minus 24536361 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26817 rs3809972 HAK 115701 18 54355925 NM_052947 NP_443179 C/G R588T minus 24536361 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26818 rs3809973 HAK 115701 18 54355912 NM_052947 NP_443179 A/C K592N minus 6834161 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26819 rs3809973 HAK 115701 18 54355912 NM_052947 NP_443179 A/C K592N minus 23563015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26820 rs3809973 HAK 115701 18 54355912 NM_052947 NP_443179 A/C K592N minus 23563015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26821 rs3809973 HAK 115701 18 54355912 NM_052947 NP_443179 A/C K592N minus 23563015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26822 rs3809974 HAK 115701 18 54355748 NM_052947 NP_443179 C/T S647L minus 4996377 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1476 0.03 123 by freq 18q21.31-q21.32 heart alpha-kinase 26823 rs3809974 HAK 115701 18 54355748 NM_052947 NP_443179 C/T S647L minus 23628689 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 18q21.31-q21.32 heart alpha-kinase 26824 rs3809974 HAK 115701 18 54355748 NM_052947 NP_443179 C/T S647L minus 23628689 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 18q21.31-q21.32 heart alpha-kinase 26825 rs3809974 HAK 115701 18 54355748 NM_052947 NP_443179 C/T S647L minus 23628689 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18q21.31-q21.32 heart alpha-kinase 26826 rs3809975 HAK 115701 18 54355469 NM_052947 NP_443179 C/G S740T minus 4996378 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 107 "HapMap,freq" 18q21.31-q21.32 heart alpha-kinase 26827 rs3809976 HAK 115701 18 54355230 NM_052947 NP_443179 G/T L820V minus 4996379 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26828 rs3809976 HAK 115701 18 54355230 NM_052947 NP_443179 G/T L820V minus 23628621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26829 rs3809976 HAK 115701 18 54355230 NM_052947 NP_443179 G/T L820V minus 23628621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26830 rs3809976 HAK 115701 18 54355230 NM_052947 NP_443179 G/T L820V minus 23628621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26831 rs3809982 HAK 115701 18 54354054 NM_052947 NP_443179 C/T P1212S minus 4996385 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1304 0.35 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26832 rs3809982 HAK 115701 18 54354054 NM_052947 NP_443179 C/T P1212S minus 24586290 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26833 rs3809982 HAK 115701 18 54354054 NM_052947 NP_443179 C/T P1212S minus 24586290 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26834 rs3809982 HAK 115701 18 54354054 NM_052947 NP_443179 C/T P1212S minus 24586290 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26835 rs3809983 HAK 115701 18 54353748 NM_052947 NP_443179 G/T A1314S minus 4996386 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26836 rs3809983 HAK 115701 18 54353748 NM_052947 NP_443179 G/T A1314S minus 24586266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26837 rs3809983 HAK 115701 18 54353748 NM_052947 NP_443179 G/T A1314S minus 24586266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26838 rs3809983 HAK 115701 18 54353748 NM_052947 NP_443179 G/T A1314S minus 24586266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 26839 rs3809984 HAK 115701 18 54335257 NM_052947 NP_443179 A/C R1698S minus 4996387 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 18q21.31-q21.32 heart alpha-kinase 26840 rs3810110 SIGLECL1 89858 19 56696555 NM_053003 NP_443729 A/G A82V plus 23813009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 26841 rs3810110 SIGLECL1 89858 19 56696555 NM_053003 NP_443729 A/G A82V plus 23813009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 26842 rs3810110 SIGLECL1 89858 19 56696555 NM_053003 NP_443729 A/G A82V plus 23813009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.28 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 26843 rs3810144 NKPD1 284353 19 50348517 NM_198478 NP_940880 C/G V118L plus 4996547 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 19q13.32 "NTPase, KAP family P-loop domain containing 1" 26844 rs3810144 NKPD1 284353 19 50348517 NM_198478 NP_940880 C/G V118L plus 4996547 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 722 0.05 107 HapMap 19q13.32 "NTPase, KAP family P-loop domain containing 1" 26845 rs3810151 ZNF526 116115 19 47420676 NM_133444 NP_597701 A/G V94A minus 4996554 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 107 "HapMap,freq" 19q13.31 zinc finger protein 526 26846 rs3810151 ZNF526 116115 19 47420676 NM_133444 NP_597701 A/G V94A minus 4996554 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1306 0.06 107 "HapMap,freq" 19q13.31 zinc finger protein 526 26847 rs3810206 GTPBP3 84705 19 17311016 NM_032620 NP_116009 C/T V250A plus 4996609 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1490 0.22 121 "by cluster,freq" 19p13.12 GTP binding protein 3 (mitochondrial) 26848 rs3810206 GTPBP3 84705 19 17311016 NM_133644 NP_598399 C/T V282A plus 4996609 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1490 0.22 121 "by cluster,freq" 19p13.12 GTP binding protein 3 (mitochondrial) 26849 rs3810449 THAP8 199745 19 41222753 NM_152658 NP_689871 A/G R70H minus 24107947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.13 THAP domain containing 8 26850 rs3810449 THAP8 199745 19 41222753 NM_152658 NP_689871 A/G R70H minus 24107947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19q13.13 THAP domain containing 8 26851 rs3810449 THAP8 199745 19 41222753 NM_152658 NP_689871 A/G R70H minus 24107947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 19q13.13 THAP domain containing 8 26852 rs3810450 THAP8 199745 19 41222402 NM_152658 NP_689871 A/G K112R minus 4996855 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.04 123 "HapMap,freq,cluster" 19q13.13 THAP domain containing 8 26853 rs3810450 THAP8 199745 19 41222402 NM_152658 NP_689871 A/G K112R minus 4996855 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1478 0.23 123 "HapMap,freq,cluster" 19q13.13 THAP domain containing 8 26854 rs3810450 THAP8 199745 19 41222402 NM_152658 NP_689871 A/G K112R minus 24107942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 19q13.13 THAP domain containing 8 26855 rs3810450 THAP8 199745 19 41222402 NM_152658 NP_689871 A/G K112R minus 24107942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 19q13.13 THAP domain containing 8 26856 rs3810450 THAP8 199745 19 41222402 NM_152658 NP_689871 A/G K112R minus 24107942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,freq,cluster" 19q13.13 THAP domain containing 8 26857 rs3810485 PRIC285 85441 20 61664572 NM_033405 NP_208384 A/G P1447L plus 4996891 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.26 114 "by doubleHit,freq,cluster" 20q13.33 peroxisomal proliferator-activated receptor A interacting complex 285 26858 rs3810548 LAMA5 3911 20 60339273 NM_005560 NP_005551 A/G M1258T plus 4996954 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.04 121 "by cluster,freq" 20q13.2-q13.3 "laminin, alpha 5" 26859 rs3810813 BTBD12 84464 16 3579828 NM_032444 NP_115820 A/G S588F plus 4997219 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1302 0.21 123 "by cluster,freq" 16p13.3 BTB (POZ) domain containing 12 26860 rs3810813 BTBD12 84464 16 3579828 NM_032444 NP_115820 A/G S588F plus 24217019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 16p13.3 BTB (POZ) domain containing 12 26861 rs3810813 BTBD12 84464 16 3579828 NM_032444 NP_115820 A/G S588F plus 24217019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16p13.3 BTB (POZ) domain containing 12 26862 rs3810813 BTBD12 84464 16 3579828 NM_032444 NP_115820 A/G S588F plus 24217019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 16p13.3 BTB (POZ) domain containing 12 26863 rs3810948 CHAT 1103 10 50492382 NM_020549 NP_065574 C/G D47E plus 4997355 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1424 0.31 107 by freq 10q11.2 choline acetyltransferase 26864 rs3810950 CHAT 1103 10 50494625 NM_020549 NP_065574 A/G A120T plus 4997357 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.19 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26865 rs3810950 CHAT 1103 10 50494625 NM_020549 NP_065574 A/G A120T plus 9807219 880 CIGMR CHAT/VACHT 1508 0.26 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26866 rs3810950 CHAT 1103 10 50494625 NM_020549 NP_065574 A/G A120T plus 24695167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26867 rs3810950 CHAT 1103 10 50494625 NM_020549 NP_065574 A/G A120T plus 24695167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26868 rs3810950 CHAT 1103 10 50494625 NM_020549 NP_065574 A/G A120T plus 24695167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26869 rs3810950 CHAT 1103 10 50494625 NM_020984 NP_066264 A/G A2T plus 4997357 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.19 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26870 rs3810950 CHAT 1103 10 50494625 NM_020984 NP_066264 A/G A2T plus 9807219 880 CIGMR CHAT/VACHT 1508 0.26 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26871 rs3810950 CHAT 1103 10 50494625 NM_020984 NP_066264 A/G A2T plus 24695167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26872 rs3810950 CHAT 1103 10 50494625 NM_020984 NP_066264 A/G A2T plus 24695167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26873 rs3810950 CHAT 1103 10 50494625 NM_020984 NP_066264 A/G A2T plus 24695167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26874 rs3810950 CHAT 1103 10 50494625 NM_020985 NP_066265 A/G A2T plus 4997357 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.19 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26875 rs3810950 CHAT 1103 10 50494625 NM_020985 NP_066265 A/G A2T plus 9807219 880 CIGMR CHAT/VACHT 1508 0.26 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26876 rs3810950 CHAT 1103 10 50494625 NM_020985 NP_066265 A/G A2T plus 24695167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26877 rs3810950 CHAT 1103 10 50494625 NM_020985 NP_066265 A/G A2T plus 24695167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26878 rs3810950 CHAT 1103 10 50494625 NM_020985 NP_066265 A/G A2T plus 24695167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26879 rs3810950 CHAT 1103 10 50494625 NM_020986 NP_066266 A/G A2T plus 4997357 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1492 0.19 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26880 rs3810950 CHAT 1103 10 50494625 NM_020986 NP_066266 A/G A2T plus 9807219 880 CIGMR CHAT/VACHT 1508 0.26 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26881 rs3810950 CHAT 1103 10 50494625 NM_020986 NP_066266 A/G A2T plus 24695167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26882 rs3810950 CHAT 1103 10 50494625 NM_020986 NP_066266 A/G A2T plus 24695167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26883 rs3810950 CHAT 1103 10 50494625 NM_020986 NP_066266 A/G A2T plus 24695167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by cluster,freq" 10q11.2 choline acetyltransferase 26884 rs3810971 MOV10L1 54456 22 48849123 NM_018995 NP_061868 C/T R182C plus 4997378 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.29 123 "HapMap,doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 26885 rs3810971 MOV10L1 54456 22 48849123 NM_018995 NP_061868 C/T R182C plus 6683249 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 123 "HapMap,doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 26886 rs3810971 MOV10L1 54456 22 48849123 NM_018995 NP_061868 C/T R182C plus 24214744 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 26887 rs3810971 MOV10L1 54456 22 48849123 NM_018995 NP_061868 C/T R182C plus 24214744 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "HapMap,doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 26888 rs3810971 MOV10L1 54456 22 48849123 NM_018995 NP_061868 C/T R182C plus 24214744 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 22q13.33 "Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" 26889 rs3811069 FUT9 10690 6 96758461 NM_006581 NP_006572 C/T T237A minus 12918711 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 6q16 "fucosyltransferase 9 (alpha (1,3) fucosyltransferase)" 26890 rs3811069 FUT9 10690 6 96758461 NM_006581 NP_006572 C/T T237A minus 23371926 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 6q16 "fucosyltransferase 9 (alpha (1,3) fucosyltransferase)" 26891 rs3811069 FUT9 10690 6 96758461 NM_006581 NP_006572 C/T T237A minus 23371926 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 6q16 "fucosyltransferase 9 (alpha (1,3) fucosyltransferase)" 26892 rs3811069 FUT9 10690 6 96758461 NM_006581 NP_006572 C/T T237A minus 23371926 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 6q16 "fucosyltransferase 9 (alpha (1,3) fucosyltransferase)" 26893 rs3811102 FBXO30 84085 6 146167486 NM_032145 NP_115521 A/T H583Q plus 4997509 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.26 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 26894 rs3811102 FBXO30 84085 6 146167486 NM_032145 NP_115521 A/T H583Q plus 24413037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 26895 rs3811102 FBXO30 84085 6 146167486 NM_032145 NP_115521 A/T H583Q plus 24413037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 26896 rs3811102 FBXO30 84085 6 146167486 NM_032145 NP_115521 A/T H583Q plus 24413037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 26897 rs3811182 ACIN1 22985 14 22619625 NM_014977 NP_055792 A/G I311M minus 4997589 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.44 107 by freq 14q11.2 apoptotic chromatin condensation inducer 1 26898 rs3811188 MRPL52 122704 14 22368975 NM_178336 NP_848026 A/C G5V minus 4997595 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26899 rs3811188 MRPL52 122704 14 22368975 NM_178336 NP_848026 A/C G5V minus 14381756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26900 rs3811188 MRPL52 122704 14 22368975 NM_178336 NP_848026 A/C G5V minus 24720933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26901 rs3811188 MRPL52 122704 14 22368975 NM_178336 NP_848026 A/C G5V minus 24720933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26902 rs3811188 MRPL52 122704 14 22368975 NM_178336 NP_848026 A/C G5V minus 24720933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26903 rs3811188 MRPL52 122704 14 22368975 NM_180981 NP_851312 A/C G5V minus 4997595 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26904 rs3811188 MRPL52 122704 14 22368975 NM_180981 NP_851312 A/C G5V minus 14381756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26905 rs3811188 MRPL52 122704 14 22368975 NM_180981 NP_851312 A/C G5V minus 24720933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26906 rs3811188 MRPL52 122704 14 22368975 NM_180981 NP_851312 A/C G5V minus 24720933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26907 rs3811188 MRPL52 122704 14 22368975 NM_180981 NP_851312 A/C G5V minus 24720933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26908 rs3811188 MRPL52 122704 14 22368975 NM_180982 NP_851313 A/C G5V minus 4997595 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26909 rs3811188 MRPL52 122704 14 22368975 NM_180982 NP_851313 A/C G5V minus 14381756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26910 rs3811188 MRPL52 122704 14 22368975 NM_180982 NP_851313 A/C G5V minus 24720933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26911 rs3811188 MRPL52 122704 14 22368975 NM_180982 NP_851313 A/C G5V minus 24720933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26912 rs3811188 MRPL52 122704 14 22368975 NM_180982 NP_851313 A/C G5V minus 24720933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26913 rs3811188 MRPL52 122704 14 22368975 NM_181307 NP_851824 A/C G5V minus 4997595 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26914 rs3811188 MRPL52 122704 14 22368975 NM_181307 NP_851824 A/C G5V minus 14381756 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26915 rs3811188 MRPL52 122704 14 22368975 NM_181307 NP_851824 A/C G5V minus 24720933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26916 rs3811188 MRPL52 122704 14 22368975 NM_181307 NP_851824 A/C G5V minus 24720933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26917 rs3811188 MRPL52 122704 14 22368975 NM_181307 NP_851824 A/C G5V minus 24720933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 14q11.2 mitochondrial ribosomal protein L52 26918 rs3811348 NOB1P 28987 16 68340356 NM_014062 NP_054781 C/T R231Q plus 4997755 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 16q22.3 likely ortholog of mouse nin one binding protein 26919 rs3811444 BIA2 25893 1 244365492 NM_015431 NP_056246 C/T T374M plus 4997851 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.2 123 "by cluster,freq" 1q44 BIA2 26920 rs3811444 BIA2 25893 1 244365492 NM_015431 NP_056246 C/T T374M plus 24279183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by cluster,freq" 1q44 BIA2 26921 rs3811444 BIA2 25893 1 244365492 NM_015431 NP_056246 C/T T374M plus 24279183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 1q44 BIA2 26922 rs3811444 BIA2 25893 1 244365492 NM_015431 NP_056246 C/T T374M plus 24279183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by cluster,freq" 1q44 BIA2 26923 rs3811514 SKIP 80309 2 228709226 XM_051221 XP_051221 A/G K617E minus 4997921 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0.36 121 "by doubleHit,freq,cluster" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 26924 rs3811515 SKIP 80309 2 228708534 XM_051221 XP_051221 G/T H847Q minus 4997922 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 26925 rs3811515 SKIP 80309 2 228708534 XM_051221 XP_051221 G/T H847Q minus 24318185 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 26926 rs3811515 SKIP 80309 2 228708534 XM_051221 XP_051221 G/T H847Q minus 24318185 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 26927 rs3811515 SKIP 80309 2 228708534 XM_051221 XP_051221 G/T H847Q minus 24318185 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 26928 rs3811553 TSGA10 80705 2 99140093 NM_025244 NP_079520 A/G R411W plus 4997960 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q11.2 "testis specific, 10" 26929 rs3811553 TSGA10 80705 2 99140093 NM_182911 NP_878915 A/G R411W plus 4997960 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q11.2 "testis specific, 10" 26930 rs3811635 MERTK 10461 2 112471232 NM_006343 NP_006334 A/G I518V plus 4998042 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0.21 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 26931 rs3811635 MERTK 10461 2 112471232 NM_006343 NP_006334 A/G I518V plus 24311093 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 26932 rs3811635 MERTK 10461 2 112471232 NM_006343 NP_006334 A/G I518V plus 24311093 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 26933 rs3811635 MERTK 10461 2 112471232 NM_006343 NP_006334 A/G I518V plus 24311093 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 26934 rs3811740 PLK4 10733 4 129164824 NM_014264 NP_055079 A/T S232T minus 4998147 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1490 0.37 123 "by doubleHit,freq,cluster" 4q27-q28 polo-like kinase 4 (Drosophila) 26935 rs3811740 PLK4 10733 4 129164824 NM_014264 NP_055079 A/T S232T minus 23985363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 4q27-q28 polo-like kinase 4 (Drosophila) 26936 rs3811740 PLK4 10733 4 129164824 NM_014264 NP_055079 A/T S232T minus 23985363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 4q27-q28 polo-like kinase 4 (Drosophila) 26937 rs3811740 PLK4 10733 4 129164824 NM_014264 NP_055079 A/T S232T minus 23985363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 4q27-q28 polo-like kinase 4 (Drosophila) 26938 rs3812030 CARD6 84674 5 40888375 NM_032587 NP_115976 A/T M395K plus 4998438 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0 107 by freq 5p13.1 "caspase recruitment domain family, member 6" 26939 rs3812031 CARD6 84674 5 40888468 NM_032587 NP_115976 A/T D426V plus 4998439 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 5p13.1 "caspase recruitment domain family, member 6" 26940 rs3812031 CARD6 84674 5 40888468 NM_032587 NP_115976 A/T D426V plus 4998439 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0 107 HapMap 5p13.1 "caspase recruitment domain family, member 6" 26941 rs3812054 MEGF10 84466 5 126760326 NM_032446 NP_115822 C/T V206I minus 4998462 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.13 123 "HapMap,freq,cluster" 5q33 MEGF10 protein 26942 rs3812054 MEGF10 84466 5 126760326 NM_032446 NP_115822 C/T V206I minus 4998462 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1298 0.09 123 "HapMap,freq,cluster" 5q33 MEGF10 protein 26943 rs3812054 MEGF10 84466 5 126760326 NM_032446 NP_115822 C/T V206I minus 23755398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 5q33 MEGF10 protein 26944 rs3812054 MEGF10 84466 5 126760326 NM_032446 NP_115822 C/T V206I minus 23755398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq,cluster" 5q33 MEGF10 protein 26945 rs3812054 MEGF10 84466 5 126760326 NM_032446 NP_115822 C/T V206I minus 23755398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq,cluster" 5q33 MEGF10 protein 26946 rs3812138 NT5E 4907 6 86255952 NM_002526 NP_002517 C/T T376A minus 4998546 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1310 0.36 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 26947 rs3812138 NT5E 4907 6 86255952 NM_002526 NP_002517 C/T T376A minus 24010796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 26948 rs3812138 NT5E 4907 6 86255952 NM_002526 NP_002517 C/T T376A minus 24010796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 26949 rs3812138 NT5E 4907 6 86255952 NM_002526 NP_002517 C/T T376A minus 24010796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 26950 rs3812153 ELOVL4 6785 6 80683094 NM_022726 NP_073563 A/G M299V minus 23395385 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6q14 "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4" 26951 rs3812153 ELOVL4 6785 6 80683094 NM_022726 NP_073563 A/G M299V minus 23395385 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6q14 "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4" 26952 rs3812153 ELOVL4 6785 6 80683094 NM_022726 NP_073563 A/G M299V minus 23395385 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q14 "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4" 26953 rs3812178 CDYL 9425 6 4661036 NM_004824 NP_004815 A/G S9P minus 4998586 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1286 0.21 119 "by doubleHit,freq,cluster" 6p25.1 "chromodomain protein, Y-like" 26954 rs3812179 CDYL 9425 6 4661015 NM_004824 NP_004815 C/T T2A minus 23989412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6p25.1 "chromodomain protein, Y-like" 26955 rs3812179 CDYL 9425 6 4661015 NM_004824 NP_004815 C/T T2A minus 23989412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6p25.1 "chromodomain protein, Y-like" 26956 rs3812179 CDYL 9425 6 4661015 NM_004824 NP_004815 C/T T2A minus 23989412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p25.1 "chromodomain protein, Y-like" 26957 rs3812447 EEF1D 1936 8 144743099 NM_032378 NP_115754 C/T A99V minus 4998856 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1498 0.14 107 by freq 8q24.3 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 26958 rs3812561 SNAPC4 6621 9 136546713 NM_003086 NP_003077 A/G P1448S plus 4998970 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26959 rs3812561 SNAPC4 6621 9 136546713 NM_003086 NP_003077 A/G P1448S plus 4998970 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1494 0.09 123 "HapMap,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26960 rs3812561 SNAPC4 6621 9 136546713 NM_003086 NP_003077 A/G P1448S plus 24102256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26961 rs3812561 SNAPC4 6621 9 136546713 NM_003086 NP_003077 A/G P1448S plus 24102256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26962 rs3812561 SNAPC4 6621 9 136546713 NM_003086 NP_003077 A/G P1448S plus 24102256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26963 rs3812571 SNAPC4 6621 9 136551131 NM_003086 NP_003077 C/G H799Q plus 4998980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26964 rs3812571 SNAPC4 6621 9 136551131 NM_003086 NP_003077 C/G H799Q plus 24566900 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26965 rs3812571 SNAPC4 6621 9 136551131 NM_003086 NP_003077 C/G H799Q plus 24566900 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26966 rs3812571 SNAPC4 6621 9 136551131 NM_003086 NP_003077 C/G H799Q plus 24566900 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 9q34.3 "small nuclear RNA activating complex, polypeptide 4, 190kDa" 26967 rs3812577 SDCCAG3 10807 9 136575474 NM_006643 NP_006634 C/T R223Q plus 4998986 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 120 "HapMap,freq,cluster" 9q34.3 serologically defined colon cancer antigen 3 26968 rs3812582 PMPCA 23203 9 136587351 XM_498426 XP_498426 A/G D249N plus 4998991 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q34.3 peptidase (mitochondrial processing) alpha 26969 rs3812583 PMPCA 23203 9 136587490 XM_498426 XP_498426 C/G G295A plus 4998992 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q34.3 peptidase (mitochondrial processing) alpha 26970 rs3812597 NOTCH1 4851 9 136669428 NM_017617 NP_060087 A/C A2020S plus 4999006 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9q34.3 "Notch homolog 1, translocation-associated (Drosophila)" 26971 rs3812723 ODZ4 26011 11 78251724 XM_166254 XP_166254 C/T V651I plus 4999132 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 11q13.4 odd Oz/ten-m homolog 4 26972 rs3812762 ST5 6764 11 8708216 NM_005418 NP_005409 C/G D399E plus 4999171 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.28 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26973 rs3812762 ST5 6764 11 8708216 NM_005418 NP_005409 C/G D399E plus 4999171 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1286 0.33 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26974 rs3812762 ST5 6764 11 8708216 NM_005418 NP_005409 C/G D399E plus 24526932 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26975 rs3812762 ST5 6764 11 8708216 NM_005418 NP_005409 C/G D399E plus 24526932 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26976 rs3812762 ST5 6764 11 8708216 NM_005418 NP_005409 C/G D399E plus 24526932 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26977 rs3812762 ST5 6764 11 8708216 NM_213618 NP_998783 C/G D399E plus 4999171 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.28 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26978 rs3812762 ST5 6764 11 8708216 NM_213618 NP_998783 C/G D399E plus 4999171 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1286 0.33 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26979 rs3812762 ST5 6764 11 8708216 NM_213618 NP_998783 C/G D399E plus 24526932 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26980 rs3812762 ST5 6764 11 8708216 NM_213618 NP_998783 C/G D399E plus 24526932 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26981 rs3812762 ST5 6764 11 8708216 NM_213618 NP_998783 C/G D399E plus 24526932 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,freq,cluster" 11p15 suppression of tumorigenicity 5 26982 rs3812813 USP44 84101 12 94430230 NM_032147 NP_115523 A/G T91A minus 12183870 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 120 "HapMap,doubleHit,freq,cluster" 12q23.1 ubiquitin specific protease 44 26983 rs3812871 PCDH20 64881 13 60883415 NM_022843 NP_073754 C/T M913V plus 4999280 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1304 0 107 by freq 13q21 protocadherin 20 26984 rs3812874 PCDH20 64881 13 60887176 NM_022843 NP_073754 G/T S12R plus 4999283 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0.18 107 by freq 13q21 protocadherin 20 26985 rs3812882 COG6 57511 13 39127891 NM_020751 NP_065802 A/G A10T plus 23721966 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26986 rs3812882 COG6 57511 13 39127891 NM_020751 NP_065802 A/G A10T plus 23721966 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26987 rs3812882 COG6 57511 13 39127891 NM_020751 NP_065802 A/G A10T plus 23721966 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26988 rs3812883 COG6 57511 13 39127957 NM_020751 NP_065802 A/T C32S plus 23721970 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26989 rs3812883 COG6 57511 13 39127957 NM_020751 NP_065802 A/T C32S plus 23721970 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26990 rs3812883 COG6 57511 13 39127957 NM_020751 NP_065802 A/T C32S plus 23721970 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 13q13.3 component of oligomeric golgi complex 6 26991 rs3812954 ZNF469 84627 16 87029709 XM_040592 XP_040592 A/T D2270V minus 4999363 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1110 0.05 107 by freq 16q24 zinc finger protein 469 26992 rs3812955 ZNF469 84627 16 87029591 XM_040592 XP_040592 C/T A2231T minus 4999364 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.03 107 "HapMap,freq" 16q24 zinc finger protein 469 26993 rs3812955 ZNF469 84627 16 87029591 XM_040592 XP_040592 C/T A2231T minus 4999364 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1486 0.07 107 "HapMap,freq" 16q24 zinc finger protein 469 26994 rs3813135 PGLYRP2 114770 19 15448345 NM_052890 NP_443122 C/T T46A plus 4999544 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 121 "HapMap,doubleHit,freq,cluster" 19p13.12 peptidoglycan recognition protein 2 26995 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 4999636 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1500 0.01 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 26996 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 9930827 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 26997 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 16338485 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 62 0.42 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 26998 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 24642218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 26999 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 24642218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 27000 rs3813227 ALMS1 7840 2 73563622 NM_015120 NP_055935 C/T R392C plus 24642218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 27001 rs3813535 STN2 85439 14 80814489 NM_033104 NP_149095 C/T S307P minus 4999944 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1308 0.33 123 "by doubleHit,freq,cluster" 14q31.1 stonin 2 27002 rs3813535 STN2 85439 14 80814489 NM_033104 NP_149095 C/T S307P minus 24105311 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 14q31.1 stonin 2 27003 rs3813535 STN2 85439 14 80814489 NM_033104 NP_149095 C/T S307P minus 24105311 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 14q31.1 stonin 2 27004 rs3813535 STN2 85439 14 80814489 NM_033104 NP_149095 C/T S307P minus 24105311 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q31.1 stonin 2 27005 rs3813536 STN2 85439 14 80814134 NM_033104 NP_149095 A/G R425H minus 4999945 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 14q31.1 stonin 2 27006 rs3813536 STN2 85439 14 80814134 NM_033104 NP_149095 A/G R425H minus 4999945 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1290 0.02 107 HapMap 14q31.1 stonin 2 27007 rs3813768 TRPV2 51393 17 16261757 NM_016113 NP_057197 C/G G17A minus 5000177 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1484 0.2 119 "by cluster,freq" 17p11.2 "transient receptor potential cation channel, subfamily V, member 2" 27008 rs3813795 SYTL1 84958 1 27363939 NM_032872 NP_116261 A/G Q444R plus 5000204 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1496 0.27 121 "by doubleHit,freq,cluster" 1p35.3 synaptotagmin-like 1 27009 rs3813832 YT521 91746 4 69031846 NM_133370 NP_588611 C/T H132R plus 23947125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 4q13.3 splicing factor YT521-B 27010 rs3813832 YT521 91746 4 69031846 NM_133370 NP_588611 C/T H132R plus 23947125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 4q13.3 splicing factor YT521-B 27011 rs3813832 YT521 91746 4 69031846 NM_133370 NP_588611 C/T H132R plus 23947125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 4q13.3 splicing factor YT521-B 27012 rs3813922 TSPYL3 128854 20 30240997 NM_178465 NP_848560 A/C P246H minus 5000333 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1276 0.28 114 "HapMap,freq,cluster" 20q11.21 TSPY-like 3 27013 rs3813922 TSPYL3 128854 20 30240997 NM_178465 NP_848560 A/C P246H minus 8449812 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 114 "HapMap,freq,cluster" 20q11.21 TSPY-like 3 27014 rs3814160 ZNF488 118738 10 47991283 NM_153034 NP_694579 C/T P249S plus 5000571 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 107 "HapMap,freq" 10q11.22 zinc finger protein 488 27015 rs3814182 MYPN 84665 10 69604264 NM_032578 NP_115967 C/G S803R plus 23590351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 27016 rs3814182 MYPN 84665 10 69604264 NM_032578 NP_115967 C/G S803R plus 23590351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 19 0.5 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 27017 rs3814182 MYPN 84665 10 69604264 NM_032578 NP_115967 C/G S803R plus 23590351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.33 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 27018 rs3814211 LRRC21 26103 10 85981764 NM_015613 NP_056428 A/G S591G minus 5000622 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1112 0.05 107 by freq 10q23 leucine rich repeat containing 21 27019 rs3814228 ZNF518 9849 10 97908905 XM_495847 XP_495847 G/T N824H minus 5000639 1072 RIKENSNPRC JBIC-ALLELE Japanese (752) 1306 0.23 123 "by cluster,freq" 10q24.1 zinc finger protein 518 27020 rs3814228 ZNF518 9849 10 97908905 XM_495847 XP_495847 G/T N824H minus 24165827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 zinc finger protein 518 27021 rs3814228 ZNF518 9849 10 97908905 XM_495847 XP_495847 G/T N824H minus 24165827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 10q24.1 zinc finger protein 518 27022 rs3814228 ZNF518 9849 10 97908905 XM_495847 XP_495847 G/T N824H minus 24165827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 10q24.1 zinc finger protein 518 27023 rs3814291 ADAMTS10 81794 19 8575976 NM_030957 NP_112219 C/T R119Q plus 5000702 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19p13.3 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10" 27024 rs3814416 GPR125 166647 4 22066066 XM_291111 XP_291111 G/T V1166G minus 5000828 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 4p15.32-p15.31 G protein-coupled receptor 125 27025 rs3814747 CATSPER1 117144 11 65544648 NM_053054 NP_444282 A/G V652I minus 23728145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q12.1 "cation channel, sperm associated 1" 27026 rs3814747 CATSPER1 117144 11 65544648 NM_053054 NP_444282 A/G V652I minus 23728145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 11q12.1 "cation channel, sperm associated 1" 27027 rs3814747 CATSPER1 117144 11 65544648 NM_053054 NP_444282 A/G V652I minus 23728145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 11q12.1 "cation channel, sperm associated 1" 27028 rs3814848 KCNK13 56659 14 89720786 NM_022054 NP_071337 C/T G305R minus 5001260 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 107 "HapMap,freq" 14q31-q32 "potassium channel, subfamily K, member 13" 27029 rs3814995 NPHS1 4868 19 41034052 NM_004646 NP_004637 C/T E117K plus 5001407 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.37 123 "HapMap,freq,cluster" 19q13.1 "nephrosis 1, congenital, Finnish type (nephrin)" 27030 rs3814995 NPHS1 4868 19 41034052 NM_004646 NP_004637 C/T E117K plus 5001407 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,freq,cluster" 19q13.1 "nephrosis 1, congenital, Finnish type (nephrin)" 27031 rs3814995 NPHS1 4868 19 41034052 NM_004646 NP_004637 C/T E117K plus 24108670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "HapMap,freq,cluster" 19q13.1 "nephrosis 1, congenital, Finnish type (nephrin)" 27032 rs3814995 NPHS1 4868 19 41034052 NM_004646 NP_004637 C/T E117K plus 24108670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 19q13.1 "nephrosis 1, congenital, Finnish type (nephrin)" 27033 rs3814995 NPHS1 4868 19 41034052 NM_004646 NP_004637 C/T E117K plus 24108670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "HapMap,freq,cluster" 19q13.1 "nephrosis 1, congenital, Finnish type (nephrin)" 27034 rs3815045 RAB3IL1 5866 11 61426522 NM_013401 NP_037533 A/G H323Y plus 24050976 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q12-q13.1 RAB3A interacting protein (rabin3)-like 1 27035 rs3815045 RAB3IL1 5866 11 61426522 NM_013401 NP_037533 A/G H323Y plus 24050976 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q12-q13.1 RAB3A interacting protein (rabin3)-like 1 27036 rs3815045 RAB3IL1 5866 11 61426522 NM_013401 NP_037533 A/G H323Y plus 24050976 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 11q12-q13.1 RAB3A interacting protein (rabin3)-like 1 27037 rs3815354 GAS7 8522 17 9763745 NM_003644 NP_003635 C/G D241H plus 5001766 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.1 growth arrest-specific 7 27038 rs3815354 GAS7 8522 17 9763745 NM_201432 NP_958836 C/G D321H plus 5001766 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.1 growth arrest-specific 7 27039 rs3815354 GAS7 8522 17 9763745 NM_201433 NP_958839 C/G D381H plus 5001766 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 17p13.1 growth arrest-specific 7 27040 rs3815456 MK-STYX 51657 7 75277811 NM_016086 NP_057170 C/T A205T plus 5001868 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.15 107 by freq 7q11.23 map kinase phosphatase-like protein MK-STYX 27041 rs3815746 COL5A3 50509 19 9940093 NM_015719 NP_056534 A/G V1428M minus 5002158 738 YUSUKE JBIC-ALLELE Japanese (752) 714 0.24 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 27042 rs3815746 COL5A3 50509 19 9940093 NM_015719 NP_056534 A/G V1428M minus 23401930 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 27043 rs3815746 COL5A3 50509 19 9940093 NM_015719 NP_056534 A/G V1428M minus 23401930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.2 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 27044 rs3815746 COL5A3 50509 19 9940093 NM_015719 NP_056534 A/G V1428M minus 23401930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 27045 rs3815746 COL5A3 50509 19 9940093 NM_015719 NP_056534 A/G V1428M minus 23401930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "HapMap,freq,cluster" 19p13.2 "collagen, type V, alpha 3" 27046 rs3815823 MVP 9961 16 29766050 NM_005115 NP_005106 C/T R766Q minus 5002235 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16p13.1-p11.2 major vault protein 27047 rs3815823 MVP 9961 16 29766050 NM_017458 NP_059447 C/T R766Q minus 5002235 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 16p13.1-p11.2 major vault protein 27048 rs3815875 LY75 4065 2 160535660 NM_002349 NP_002340 G/T D884A plus 5002287 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 107 HapMap 2q24 lymphocyte antigen 75 27049 rs3816045 EML2 24139 19 50816357 NM_012155 NP_036287 A/G R357H minus 5002457 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.2 123 "HapMap,freq,cluster" 19q13.32 echinoderm microtubule associated protein like 2 27050 rs3816045 EML2 24139 19 50816357 NM_012155 NP_036287 A/G R357H minus 5002457 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 19q13.32 echinoderm microtubule associated protein like 2 27051 rs3816045 EML2 24139 19 50816357 NM_012155 NP_036287 A/G R357H minus 23610956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 19q13.32 echinoderm microtubule associated protein like 2 27052 rs3816045 EML2 24139 19 50816357 NM_012155 NP_036287 A/G R357H minus 23610956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 19q13.32 echinoderm microtubule associated protein like 2 27053 rs3816045 EML2 24139 19 50816357 NM_012155 NP_036287 A/G R357H minus 23610956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,freq,cluster" 19q13.32 echinoderm microtubule associated protein like 2 27054 rs3816183 HAAO 23498 2 42927370 NM_012205 NP_036337 C/T I37V plus 23842878 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 2p22.1 "3-hydroxyanthranilate 3,4-dioxygenase" 27055 rs3816183 HAAO 23498 2 42927370 NM_012205 NP_036337 C/T I37V plus 23842878 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2p22.1 "3-hydroxyanthranilate 3,4-dioxygenase" 27056 rs3816183 HAAO 23498 2 42927370 NM_012205 NP_036337 C/T I37V plus 23842878 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 2p22.1 "3-hydroxyanthranilate 3,4-dioxygenase" 27057 rs3816208 SDC2 6383 8 97683801 NM_002998 NP_002989 C/T A59T minus 5002621 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.2 123 "HapMap,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 27058 rs3816208 SDC2 6383 8 97683801 NM_002998 NP_002989 C/T A59T minus 5002621 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 27059 rs3816208 SDC2 6383 8 97683801 NM_002998 NP_002989 C/T A59T minus 24044117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 27060 rs3816208 SDC2 6383 8 97683801 NM_002998 NP_002989 C/T A59T minus 24044117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 27061 rs3816208 SDC2 6383 8 97683801 NM_002998 NP_002989 C/T A59T minus 24044117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 8q22-q23 "syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)" 27062 rs3816281 PLEK 5341 2 68519598 NM_002664 NP_002655 G/T K97N plus 5002694 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.33 123 "HapMap,freq,cluster" 2p13.3 pleckstrin 27063 rs3816281 PLEK 5341 2 68519598 NM_002664 NP_002655 G/T K97N plus 5002694 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 123 "HapMap,freq,cluster" 2p13.3 pleckstrin 27064 rs3816281 PLEK 5341 2 68519598 NM_002664 NP_002655 G/T K97N plus 23190859 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,freq,cluster" 2p13.3 pleckstrin 27065 rs3816281 PLEK 5341 2 68519598 NM_002664 NP_002655 G/T K97N plus 23190859 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,freq,cluster" 2p13.3 pleckstrin 27066 rs3816281 PLEK 5341 2 68519598 NM_002664 NP_002655 G/T K97N plus 23190859 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,freq,cluster" 2p13.3 pleckstrin 27067 rs3816300 T 6862 6 166542416 NM_003181 NP_003172 A/G N369S minus 5002713 738 YUSUKE JBIC-ALLELE Japanese (752) 734 0.49 123 "by cluster,freq" 6q27 "T, brachyury homolog (mouse)" 27068 rs3816300 T 6862 6 166542416 NM_003181 NP_003172 A/G N369S minus 24146227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 6q27 "T, brachyury homolog (mouse)" 27069 rs3816300 T 6862 6 166542416 NM_003181 NP_003172 A/G N369S minus 24146227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by cluster,freq" 6q27 "T, brachyury homolog (mouse)" 27070 rs3816300 T 6862 6 166542416 NM_003181 NP_003172 A/G N369S minus 24146227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 6q27 "T, brachyury homolog (mouse)" 27071 rs3816478 TPCN2 219931 11 68607990 NM_139075 NP_620714 C/T L564P plus 5002891 738 YUSUKE JBIC-ALLELE Japanese (752) 1464 0.44 121 "by doubleHit,freq,cluster" 11q13.1-q13.2 two pore segment channel 2 27072 rs3816533 PLA2G4B 8681 15 39921389 NM_005090 NP_005081 C/T R422C plus 5002946 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.27 123 "HapMap,freq,cluster" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 27073 rs3816533 PLA2G4B 8681 15 39921389 NM_005090 NP_005081 C/T R422C plus 21241722 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.16 123 "HapMap,freq,cluster" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 27074 rs3816533 PLA2G4B 8681 15 39921389 NM_005090 NP_005081 C/T R422C plus 23957308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,freq,cluster" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 27075 rs3816533 PLA2G4B 8681 15 39921389 NM_005090 NP_005081 C/T R422C plus 23957308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 27076 rs3816533 PLA2G4B 8681 15 39921389 NM_005090 NP_005081 C/T R422C plus 23957308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 27077 rs3816539 DHDDS 79947 1 26470769 NM_024887 NP_079163 A/G V253M plus 5002952 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.24 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27078 rs3816539 DHDDS 79947 1 26470769 NM_024887 NP_079163 A/G V253M plus 23682986 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27079 rs3816539 DHDDS 79947 1 26470769 NM_024887 NP_079163 A/G V253M plus 23682986 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27080 rs3816539 DHDDS 79947 1 26470769 NM_024887 NP_079163 A/G V253M plus 23682986 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27081 rs3816539 DHDDS 79947 1 26470769 NM_205861 NP_995583 A/G V253M plus 5002952 738 YUSUKE JBIC-ALLELE Japanese (752) 1304 0.24 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27082 rs3816539 DHDDS 79947 1 26470769 NM_205861 NP_995583 A/G V253M plus 23682986 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27083 rs3816539 DHDDS 79947 1 26470769 NM_205861 NP_995583 A/G V253M plus 23682986 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27084 rs3816539 DHDDS 79947 1 26470769 NM_205861 NP_995583 A/G V253M plus 23682986 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1p35.3 dehydrodolichyl diphosphate synthase 27085 rs3816540 RPS6KA1 6195 1 26567653 NM_002953 NP_002944 A/C K335T plus 5002953 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.23 107 by freq 3 "ribosomal protein S6 kinase, 90kDa, polypeptide 1" 27086 rs3816605 NUP160 23279 11 47813829 XM_113678 XP_113678 C/T T469A plus 5003020 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.27 123 "by cluster,freq" 11p11.12 nucleoporin 160kDa 27087 rs3816605 NUP160 23279 11 47813829 XM_113678 XP_113678 C/T T469A plus 24666054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 11p11.12 nucleoporin 160kDa 27088 rs3816605 NUP160 23279 11 47813829 XM_113678 XP_113678 C/T T469A plus 24666054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "by cluster,freq" 11p11.12 nucleoporin 160kDa 27089 rs3816605 NUP160 23279 11 47813829 XM_113678 XP_113678 C/T T469A plus 24666054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by cluster,freq" 11p11.12 nucleoporin 160kDa 27090 rs3816665 LAMA2 3908 6 129613023 NM_000426 NP_000417 C/T R619H minus 23373554 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 27091 rs3816665 LAMA2 3908 6 129613023 NM_000426 NP_000417 C/T R619H minus 23373554 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 27092 rs3816665 LAMA2 3908 6 129613023 NM_000426 NP_000417 C/T R619H minus 23373554 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 27093 rs3816748 DLC1 10395 8 13401711 NM_024767 NP_079043 C/G L81V plus 23975435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27094 rs3816748 DLC1 10395 8 13401711 NM_024767 NP_079043 C/G L81V plus 23975435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27095 rs3816748 DLC1 10395 8 13401711 NM_024767 NP_079043 C/G L81V plus 23975435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27096 rs3816748 DLC1 10395 8 13401711 NM_182643 NP_872584 C/G L81V plus 23975435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27097 rs3816748 DLC1 10395 8 13401711 NM_182643 NP_872584 C/G L81V plus 23975435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27098 rs3816748 DLC1 10395 8 13401711 NM_182643 NP_872584 C/G L81V plus 23975435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 8p22 deleted in liver cancer 1 27099 rs3816800 ATP10A 57194 15 23476187 NM_024490 NP_077816 C/G R1298S minus 5003215 738 YUSUKE JBIC-ALLELE Japanese (752) 748 0.34 120 "by cluster,freq" 15q11-q13 "ATPase, Class V, type 10A" 27100 rs3816800 ATP10A 57194 15 23476187 NM_024490 NP_077816 C/G R1298S minus 5951761 1303 SEQUENOM CEPH CEPH (92) 92 0.14 120 "by cluster,freq" 15q11-q13 "ATPase, Class V, type 10A" 27101 rs3816873 MTP 4547 4 100861842 NM_000253 NP_000244 C/T I128T plus 5003288 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.16 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 27102 rs3816873 MTP 4547 4 100861842 NM_000253 NP_000244 C/T I128T plus 24365816 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 27103 rs3816873 MTP 4547 4 100861842 NM_000253 NP_000244 C/T I128T plus 24365816 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 27104 rs3816873 MTP 4547 4 100861842 NM_000253 NP_000244 C/T I128T plus 24365816 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 27105 rs3816988 TLN2 83660 15 60898792 NM_015059 NP_055874 A/G F2266L minus 5003403 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.07 123 "HapMap,freq,cluster" 15q15-q21 talin 2 27106 rs3816988 TLN2 83660 15 60898792 NM_015059 NP_055874 A/G F2266L minus 5003403 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq,cluster" 15q15-q21 talin 2 27107 rs3816988 TLN2 83660 15 60898792 NM_015059 NP_055874 A/G F2266L minus 23510605 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 15q15-q21 talin 2 27108 rs3816988 TLN2 83660 15 60898792 NM_015059 NP_055874 A/G F2266L minus 23510605 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 15q15-q21 talin 2 27109 rs3816988 TLN2 83660 15 60898792 NM_015059 NP_055874 A/G F2266L minus 23510605 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,freq,cluster" 15q15-q21 talin 2 27110 rs3817121 TIP120B 23066 3 12836608 XM_371617 XP_371617 A/G V897I plus 19524606 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 27111 rs3817121 TIP120B 23066 3 12836608 XM_371617 XP_371617 A/G V897I plus 23891031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 27112 rs3817121 TIP120B 23066 3 12836608 XM_371617 XP_371617 A/G V897I plus 23891031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 27113 rs3817121 TIP120B 23066 3 12836608 XM_371617 XP_371617 A/G V897I plus 23891031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "HapMap,doubleHit,freq,cluster" 3p25.2 TBP-interacting protein 27114 rs3817405 PLXDC2 84898 10 20546424 NM_032812 NP_116201 C/T V396I minus 24494839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 "by doubleHit,freq,cluster" 10p12.33 plexin domain containing 2 27115 rs3817405 PLXDC2 84898 10 20546424 NM_032812 NP_116201 C/T V396I minus 24494839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10p12.33 plexin domain containing 2 27116 rs3817405 PLXDC2 84898 10 20546424 NM_032812 NP_116201 C/T V396I minus 24494839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 10p12.33 plexin domain containing 2 27117 rs3817552 MYBPC1 4604 12 100547631 NM_002465 NP_002456 C/G H506Q minus 5003967 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.31 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27118 rs3817552 MYBPC1 4604 12 100547631 NM_002465 NP_002456 C/G H506Q minus 5003967 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27119 rs3817552 MYBPC1 4604 12 100547631 NM_002465 NP_002456 C/G H506Q minus 24009139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27120 rs3817552 MYBPC1 4604 12 100547631 NM_002465 NP_002456 C/G H506Q minus 24009139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27121 rs3817552 MYBPC1 4604 12 100547631 NM_002465 NP_002456 C/G H506Q minus 24009139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27122 rs3817552 MYBPC1 4604 12 100547631 NM_206819 NP_996555 C/G H506Q minus 5003967 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.31 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27123 rs3817552 MYBPC1 4604 12 100547631 NM_206819 NP_996555 C/G H506Q minus 5003967 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27124 rs3817552 MYBPC1 4604 12 100547631 NM_206819 NP_996555 C/G H506Q minus 24009139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27125 rs3817552 MYBPC1 4604 12 100547631 NM_206819 NP_996555 C/G H506Q minus 24009139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27126 rs3817552 MYBPC1 4604 12 100547631 NM_206819 NP_996555 C/G H506Q minus 24009139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27127 rs3817552 MYBPC1 4604 12 100547631 NM_206820 NP_996556 C/G H481Q minus 5003967 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.31 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27128 rs3817552 MYBPC1 4604 12 100547631 NM_206820 NP_996556 C/G H481Q minus 5003967 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27129 rs3817552 MYBPC1 4604 12 100547631 NM_206820 NP_996556 C/G H481Q minus 24009139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27130 rs3817552 MYBPC1 4604 12 100547631 NM_206820 NP_996556 C/G H481Q minus 24009139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27131 rs3817552 MYBPC1 4604 12 100547631 NM_206820 NP_996556 C/G H481Q minus 24009139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27132 rs3817552 MYBPC1 4604 12 100547631 NM_206821 NP_996557 C/G H481Q minus 5003967 738 YUSUKE JBIC-ALLELE Japanese (752) 908 0.31 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27133 rs3817552 MYBPC1 4604 12 100547631 NM_206821 NP_996557 C/G H481Q minus 5003967 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27134 rs3817552 MYBPC1 4604 12 100547631 NM_206821 NP_996557 C/G H481Q minus 24009139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27135 rs3817552 MYBPC1 4604 12 100547631 NM_206821 NP_996557 C/G H481Q minus 24009139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27136 rs3817552 MYBPC1 4604 12 100547631 NM_206821 NP_996557 C/G H481Q minus 24009139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 12q23.3 "myosin binding protein C, slow type" 27137 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 5586935 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.27 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27138 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 5586935 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.44 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27139 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 5586935 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27140 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 5586935 777 SNP500CANCER HISP1 Hispanic (23) 46 0.41 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27141 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 5586935 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27142 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 24608629 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27143 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 24608629 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27144 rs3817672 TFRC 7037 3 197289121 NM_003234 NP_003225 A/G G142S minus 24608629 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 3q26.2-qter "transferrin receptor (p90, CD71)" 27145 rs3817893 CHD6 84181 20 39478645 NM_032221 NP_115597 C/G H2161Q minus 23537868 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 20q12-q13.11 chromodomain helicase DNA binding protein 6 27146 rs3817893 CHD6 84181 20 39478645 NM_032221 NP_115597 C/G H2161Q minus 23537868 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 20q12-q13.11 chromodomain helicase DNA binding protein 6 27147 rs3817893 CHD6 84181 20 39478645 NM_032221 NP_115597 C/G H2161Q minus 23537868 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 20q12-q13.11 chromodomain helicase DNA binding protein 6 27148 rs3818199 PYGB 5834 20 25207006 NM_002862 NP_002853 G/T A303S plus 24140144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 27149 rs3818199 PYGB 5834 20 25207006 NM_002862 NP_002853 G/T A303S plus 24140144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 27150 rs3818199 PYGB 5834 20 25207006 NM_002862 NP_002853 G/T A303S plus 24140144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 20p11.2-p11.1 "phosphorylase, glycogen; brain" 27151 rs3818511 INPP5A 3632 10 134309378 NM_005539 NP_005530 C/T K45R minus 5004926 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.28 123 "by cluster,freq" 10q26.3 "inositol polyphosphate-5-phosphatase, 40kDa" 27152 rs3818511 INPP5A 3632 10 134309378 NM_005539 NP_005530 C/T K45R minus 5004926 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "by cluster,freq" 10q26.3 "inositol polyphosphate-5-phosphatase, 40kDa" 27153 rs3818511 INPP5A 3632 10 134309378 NM_005539 NP_005530 C/T K45R minus 24090718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 10q26.3 "inositol polyphosphate-5-phosphatase, 40kDa" 27154 rs3818511 INPP5A 3632 10 134309378 NM_005539 NP_005530 C/T K45R minus 24090718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 10q26.3 "inositol polyphosphate-5-phosphatase, 40kDa" 27155 rs3818511 INPP5A 3632 10 134309378 NM_005539 NP_005530 C/T K45R minus 24090718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 10q26.3 "inositol polyphosphate-5-phosphatase, 40kDa" 27156 rs3818562 EPS8L3 79574 1 110012483 NM_024526 NP_078802 C/T H293Y minus 24275907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27157 rs3818562 EPS8L3 79574 1 110012483 NM_024526 NP_078802 C/T H293Y minus 24275907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27158 rs3818562 EPS8L3 79574 1 110012483 NM_024526 NP_078802 C/T H293Y minus 24275907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27159 rs3818562 EPS8L3 79574 1 110012483 NM_133181 NP_573444 C/T H293Y minus 24275907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27160 rs3818562 EPS8L3 79574 1 110012483 NM_133181 NP_573444 C/T H293Y minus 24275907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27161 rs3818562 EPS8L3 79574 1 110012483 NM_133181 NP_573444 C/T H293Y minus 24275907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27162 rs3818562 EPS8L3 79574 1 110012483 NM_139053 NP_620641 C/T H294Y minus 24275907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27163 rs3818562 EPS8L3 79574 1 110012483 NM_139053 NP_620641 C/T H294Y minus 24275907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27164 rs3818562 EPS8L3 79574 1 110012483 NM_139053 NP_620641 C/T H294Y minus 24275907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 27165 rs3819142 UMODL1 89766 21 42430767 NM_173568 NP_775839 A/C N263H plus 23652298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by cluster,freq" 21q22.3 uromodulin-like 1 27166 rs3819142 UMODL1 89766 21 42430767 NM_173568 NP_775839 A/C N263H plus 23652298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 21q22.3 uromodulin-like 1 27167 rs3819142 UMODL1 89766 21 42430767 NM_173568 NP_775839 A/C N263H plus 23652298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by cluster,freq" 21q22.3 uromodulin-like 1 27168 rs3819158 PRDM15 63977 21 42095958 NM_022115 NP_071398 C/T V1342I plus 5005573 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.01 107 by freq 21q22.3 PR domain containing 15 27169 rs3819946 CRYZ 1429 1 74887907 NM_001889 NP_001880 C/T I176V plus 23195090 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1p31-p22 "crystallin, zeta (quinone reductase)" 27170 rs3819946 CRYZ 1429 1 74887907 NM_001889 NP_001880 C/T I176V plus 23195090 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 1p31-p22 "crystallin, zeta (quinone reductase)" 27171 rs3819946 CRYZ 1429 1 74887907 NM_001889 NP_001880 C/T I176V plus 23195090 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p31-p22 "crystallin, zeta (quinone reductase)" 27172 rs3820071 ELA2B 51032 1 15554073 NM_015849 NP_056933 A/G G79R plus 24220503 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 27173 rs3820071 ELA2B 51032 1 15554073 NM_015849 NP_056933 A/G G79R plus 24220503 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 27174 rs3820071 ELA2B 51032 1 15554073 NM_015849 NP_056933 A/G G79R plus 24220503 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.4 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 27175 rs3820198 LRP8 7804 1 53504672 NM_004631 NP_004622 G/T D46E minus 5006616 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.46 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27176 rs3820198 LRP8 7804 1 53504672 NM_004631 NP_004622 G/T D46E minus 23838942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27177 rs3820198 LRP8 7804 1 53504672 NM_004631 NP_004622 G/T D46E minus 23838942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27178 rs3820198 LRP8 7804 1 53504672 NM_004631 NP_004622 G/T D46E minus 23838942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27179 rs3820198 LRP8 7804 1 53504672 NM_017522 NP_059992 G/T D46E minus 5006616 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.46 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27180 rs3820198 LRP8 7804 1 53504672 NM_017522 NP_059992 G/T D46E minus 23838942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27181 rs3820198 LRP8 7804 1 53504672 NM_017522 NP_059992 G/T D46E minus 23838942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27182 rs3820198 LRP8 7804 1 53504672 NM_017522 NP_059992 G/T D46E minus 23838942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27183 rs3820198 LRP8 7804 1 53504672 NM_033300 NP_150643 G/T D46E minus 5006616 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.46 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27184 rs3820198 LRP8 7804 1 53504672 NM_033300 NP_150643 G/T D46E minus 23838942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27185 rs3820198 LRP8 7804 1 53504672 NM_033300 NP_150643 G/T D46E minus 23838942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27186 rs3820198 LRP8 7804 1 53504672 NM_033300 NP_150643 G/T D46E minus 23838942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by doubleHit,freq,cluster" 1p34 "low density lipoprotein receptor-related protein 8, apolipoprotein e receptor" 27187 rs3820678 OR10R2 343406 1 155263311 XM_291548 XP_291548 A/G A418T plus 24280176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 27188 rs3820678 OR10R2 343406 1 155263311 XM_291548 XP_291548 A/G A418T plus 24280176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 27189 rs3820678 OR10R2 343406 1 155263311 XM_291548 XP_291548 A/G A418T plus 24280176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 27190 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 5007126 738 YUSUKE JBIC-ALLELE Japanese (752) 1468 0.26 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27191 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 6139239 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27192 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 16338449 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 16 0.25 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27193 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 24629374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27194 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 24629374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27195 rs3820700 ALMS1 7840 2 73628465 NM_015120 NP_055935 C/T S2574N minus 24629374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq,cluster" 2p13 Alstrom syndrome 1 27196 rs3820921 BIRC6 57448 2 32609882 NM_016252 NP_057336 C/G R2187T minus 5007353 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2p22-p21 baculoviral IAP repeat-containing 6 (apollon) 27197 rs3821033 ZNF142 7701 2 219332807 XM_376172 XP_376172 C/T A1635T plus 5007469 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.11 123 "by cluster,freq" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 27198 rs3821033 ZNF142 7701 2 219332807 XM_376172 XP_376172 C/T A1635T plus 23727423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by cluster,freq" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 27199 rs3821033 ZNF142 7701 2 219332807 XM_376172 XP_376172 C/T A1635T plus 23727423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.26 123 "by cluster,freq" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 27200 rs3821033 ZNF142 7701 2 219332807 XM_376172 XP_376172 C/T A1635T plus 23727423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.12 123 "by cluster,freq" 2q34-q35 zinc finger protein 142 (clone pHZ-49) 27201 rs3821348 ANKMY1 51281 2 241183443 NM_016552 NP_057636 A/C V472L plus 6439297 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27202 rs3821348 ANKMY1 51281 2 241183443 NM_016552 NP_057636 A/C V472L plus 24654452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27203 rs3821348 ANKMY1 51281 2 241183443 NM_016552 NP_057636 A/C V472L plus 24654452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27204 rs3821348 ANKMY1 51281 2 241183443 NM_016552 NP_057636 A/C V472L plus 24654452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27205 rs3821348 ANKMY1 51281 2 241183443 NM_017844 NP_060314 A/C V331L plus 6439297 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27206 rs3821348 ANKMY1 51281 2 241183443 NM_017844 NP_060314 A/C V331L plus 24654452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27207 rs3821348 ANKMY1 51281 2 241183443 NM_017844 NP_060314 A/C V331L plus 24654452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27208 rs3821348 ANKMY1 51281 2 241183443 NM_017844 NP_060314 A/C V331L plus 24654452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 2q37.3 ankyrin repeat and MYND domain containing 1 27209 rs3821875 CELSR3 1951 3 48672658 NM_001407 NP_001398 C/G S805T minus 5008321 738 YUSUKE JBIC-ALLELE Japanese (752) 1290 0.05 121 "by cluster,freq" 3p24.1-p21.2 "cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)" 27210 rs3821979 ShrmL 57619 4 77988604 NM_020859 NP_065910 A/T L146H minus 23909335 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 4q21.22 Shroom-related protein 27211 rs3821979 ShrmL 57619 4 77988604 NM_020859 NP_065910 A/T L146H minus 23909335 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 4q21.22 Shroom-related protein 27212 rs3821979 ShrmL 57619 4 77988604 NM_020859 NP_065910 A/T L146H minus 23909335 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 4q21.22 Shroom-related protein 27213 rs3822346 PCDHA4 56144 5 140167506 NM_018907 NP_061730 A/G P184S minus 14681214 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 121 "HapMap,doubleHit,freq,cluster" 5q31 protocadherin alpha 4 27214 rs3822346 PCDHA4 56144 5 140167506 NM_031500 NP_113688 A/G P184S minus 14681214 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 121 "HapMap,doubleHit,freq,cluster" 5q31 protocadherin alpha 4 27215 rs3822471 IDN3 25836 5 37021060 NM_015384 NP_056199 A/G N674S plus 5008924 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by cluster,freq" 5p13.2 IDN3 protein 27216 rs3822471 IDN3 25836 5 37021060 NM_015384 NP_056199 A/G N674S plus 23992622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "by cluster,freq" 5p13.2 IDN3 protein 27217 rs3822471 IDN3 25836 5 37021060 NM_015384 NP_056199 A/G N674S plus 23992622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.08 123 "by cluster,freq" 5p13.2 IDN3 protein 27218 rs3822471 IDN3 25836 5 37021060 NM_015384 NP_056199 A/G N674S plus 23992622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by cluster,freq" 5p13.2 IDN3 protein 27219 rs3822471 IDN3 25836 5 37021060 NM_133433 NP_597677 A/G N674S plus 5008924 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.07 123 "by cluster,freq" 5p13.2 IDN3 protein 27220 rs3822471 IDN3 25836 5 37021060 NM_133433 NP_597677 A/G N674S plus 23992622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 "by cluster,freq" 5p13.2 IDN3 protein 27221 rs3822471 IDN3 25836 5 37021060 NM_133433 NP_597677 A/G N674S plus 23992622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.08 123 "by cluster,freq" 5p13.2 IDN3 protein 27222 rs3822471 IDN3 25836 5 37021060 NM_133433 NP_597677 A/G N674S plus 23992622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by cluster,freq" 5p13.2 IDN3 protein 27223 rs3822587 POLK 51426 5 74928108 NM_016218 NP_057302 A/G I612V plus 5009046 738 YUSUKE JBIC-ALLELE Japanese (752) 1292 0.01 123 HapMap 5q13 polymerase (DNA directed) kappa 27224 rs3822587 POLK 51426 5 74928108 NM_016218 NP_057302 A/G I612V plus 5009046 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 HapMap 5q13 polymerase (DNA directed) kappa 27225 rs3822587 POLK 51426 5 74928108 NM_016218 NP_057302 A/G I612V plus 24188262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 HapMap 5q13 polymerase (DNA directed) kappa 27226 rs3822587 POLK 51426 5 74928108 NM_016218 NP_057302 A/G I612V plus 24188262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 HapMap 5q13 polymerase (DNA directed) kappa 27227 rs3822587 POLK 51426 5 74928108 NM_016218 NP_057302 A/G I612V plus 24188262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 HapMap 5q13 polymerase (DNA directed) kappa 27228 rs3823310 AKAP12 9590 6 151766440 NM_005100 NP_005091 G/T E1600D minus 24222811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27229 rs3823310 AKAP12 9590 6 151766440 NM_005100 NP_005091 G/T E1600D minus 24222811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27230 rs3823310 AKAP12 9590 6 151766440 NM_005100 NP_005091 G/T E1600D minus 24222811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27231 rs3823310 AKAP12 9590 6 151766440 NM_144497 NP_653080 G/T E1502D minus 24222811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27232 rs3823310 AKAP12 9590 6 151766440 NM_144497 NP_653080 G/T E1502D minus 24222811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27233 rs3823310 AKAP12 9590 6 151766440 NM_144497 NP_653080 G/T E1502D minus 24222811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6q24-q25 A kinase (PRKA) anchor protein (gravin) 12 27234 rs3824419 DMRT2 10655 9 1046728 NM_181872 NP_870987 C/G A381P minus 5010899 738 YUSUKE JBIC-ALLELE Japanese (752) 1484 0.5 123 "HapMap,doubleHit,freq,cluster" 9p24.3 doublesex and mab-3 related transcription factor 2 27235 rs3824419 DMRT2 10655 9 1046728 NM_181872 NP_870987 C/G A381P minus 5010899 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 9p24.3 doublesex and mab-3 related transcription factor 2 27236 rs3824419 DMRT2 10655 9 1046728 NM_181872 NP_870987 C/G A381P minus 24195860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 9p24.3 doublesex and mab-3 related transcription factor 2 27237 rs3824419 DMRT2 10655 9 1046728 NM_181872 NP_870987 C/G A381P minus 24195860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "HapMap,doubleHit,freq,cluster" 9p24.3 doublesex and mab-3 related transcription factor 2 27238 rs3824419 DMRT2 10655 9 1046728 NM_181872 NP_870987 C/G A381P minus 24195860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 9p24.3 doublesex and mab-3 related transcription factor 2 27239 rs3824553 GALT 2592 9 34638398 NM_000155 NP_000146 C/G S211T minus 5011033 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0 107 HapMap 9p13 galactose-1-phosphate uridylyltransferase 27240 rs3824553 GALT 2592 9 34638398 NM_000155 NP_000146 C/G S211T minus 5011033 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9p13 galactose-1-phosphate uridylyltransferase 27241 rs3824553 GALT 2592 9 34638398 NM_147132 NP_667343 C/G S126T minus 5011033 738 YUSUKE JBIC-ALLELE Japanese (752) 1504 0 107 HapMap 9p13 galactose-1-phosphate uridylyltransferase 27242 rs3824553 GALT 2592 9 34638398 NM_147132 NP_667343 C/G S126T minus 5011033 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 9p13 galactose-1-phosphate uridylyltransferase 27243 rs3824874 MTMR2 8898 11 95296759 NM_016156 NP_057240 G/T K3T plus 24511328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q22 myotubularin related protein 2 27244 rs3824874 MTMR2 8898 11 95296759 NM_016156 NP_057240 G/T K3T plus 24511328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11q22 myotubularin related protein 2 27245 rs3824874 MTMR2 8898 11 95296759 NM_016156 NP_057240 G/T K3T plus 24511328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11q22 myotubularin related protein 2 27246 rs3824886 HTATIP2 10553 11 20361189 NM_006410 NP_006401 G/T S197R plus 10691447 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 11p15.1 "HIV-1 Tat interactive protein 2, 30kDa" 27247 rs3824886 HTATIP2 10553 11 20361189 NM_006410 NP_006401 G/T S197R plus 24147906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 11p15.1 "HIV-1 Tat interactive protein 2, 30kDa" 27248 rs3824886 HTATIP2 10553 11 20361189 NM_006410 NP_006401 G/T S197R plus 24147906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "HapMap,doubleHit,freq,cluster" 11p15.1 "HIV-1 Tat interactive protein 2, 30kDa" 27249 rs3824886 HTATIP2 10553 11 20361189 NM_006410 NP_006401 G/T S197R plus 24147906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 11p15.1 "HIV-1 Tat interactive protein 2, 30kDa" 27250 rs3825549 MIA2 117153 14 38786559 NM_054024 NP_473365 A/G S344P minus 5012030 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.13 123 "HapMap,freq,cluster" 14q13.2 melanoma inhibitory activity 2 27251 rs3825549 MIA2 117153 14 38786559 NM_054024 NP_473365 A/G S344P minus 19303581 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq,cluster" 14q13.2 melanoma inhibitory activity 2 27252 rs3825549 MIA2 117153 14 38786559 NM_054024 NP_473365 A/G S344P minus 24579987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 14q13.2 melanoma inhibitory activity 2 27253 rs3825549 MIA2 117153 14 38786559 NM_054024 NP_473365 A/G S344P minus 24579987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "HapMap,freq,cluster" 14q13.2 melanoma inhibitory activity 2 27254 rs3825549 MIA2 117153 14 38786559 NM_054024 NP_473365 A/G S344P minus 24579987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,freq,cluster" 14q13.2 melanoma inhibitory activity 2 27255 rs3825584 WDR23 80344 14 23657479 NM_025230 NP_079506 A/G R207H plus 5012065 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.43 120 "by cluster,freq" 14q11.2 WD repeat domain 23 27256 rs3825584 WDR23 80344 14 23657479 NM_181357 NP_852002 A/G R181H plus 5012065 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.43 120 "by cluster,freq" 14q11.2 WD repeat domain 23 27257 rs3825725 PLEKHH1 57475 14 67105632 XM_375087 XP_375087 A/G T619A plus 5012206 738 YUSUKE JBIC-ALLELE Japanese (752) 1108 0.25 107 "HapMap,freq" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 27258 rs3825725 PLEKHH1 57475 14 67105632 XM_375087 XP_375087 A/G T619A plus 5012206 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 107 "HapMap,freq" 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 27259 rs3825801 MYO5C 55930 15 50305006 NM_018728 NP_061198 A/G E1075K minus 10763025 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,freq,cluster" 15q21 myosin VC 27260 rs3825801 MYO5C 55930 15 50305006 NM_018728 NP_061198 A/G E1075K minus 24182907 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,freq,cluster" 15q21 myosin VC 27261 rs3825801 MYO5C 55930 15 50305006 NM_018728 NP_061198 A/G E1075K minus 24182907 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 15q21 myosin VC 27262 rs3825801 MYO5C 55930 15 50305006 NM_018728 NP_061198 A/G E1075K minus 24182907 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,freq,cluster" 15q21 myosin VC 27263 rs3825807 ADAMTS7 11173 15 76876166 NM_014272 NP_055087 C/T S214P minus 5012288 738 YUSUKE JBIC-ALLELE Japanese (752) 1094 0.15 121 "by doubleHit,freq,cluster" 15q24.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 7" 27264 rs3825942 LOXL1 4016 15 72006635 NM_005576 NP_005567 C/T G153D minus 5012423 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.14 107 by freq 15q22 lysyl oxidase-like 1 27265 rs3826007 BCL2A1 597 15 78050272 NM_004049 NP_004040 A/G G82D minus 5012488 738 YUSUKE JBIC-ALLELE Japanese (752) 1426 0.22 123 "HapMap,freq,cluster" 15q24.3 BCL2-related protein A1 27266 rs3826007 BCL2A1 597 15 78050272 NM_004049 NP_004040 A/G G82D minus 5012488 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 123 "HapMap,freq,cluster" 15q24.3 BCL2-related protein A1 27267 rs3826007 BCL2A1 597 15 78050272 NM_004049 NP_004040 A/G G82D minus 24064930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 15q24.3 BCL2-related protein A1 27268 rs3826007 BCL2A1 597 15 78050272 NM_004049 NP_004040 A/G G82D minus 24064930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 15q24.3 BCL2-related protein A1 27269 rs3826007 BCL2A1 597 15 78050272 NM_004049 NP_004040 A/G G82D minus 24064930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,freq,cluster" 15q24.3 BCL2-related protein A1 27270 rs3826107 CHST5 23563 16 74120831 NM_012126 NP_036258 A/G T297M plus 5012588 738 YUSUKE JBIC-ALLELE Japanese (752) 1444 0.2 116 "by doubleHit,freq,cluster" 16q22.3 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 27271 rs3826107 CHST5 23563 16 74120831 NM_024533 NP_078809 A/G T318M plus 5012588 738 YUSUKE JBIC-ALLELE Japanese (752) 1444 0.2 116 "by doubleHit,freq,cluster" 16q22.3 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 27272 rs3826593 HAK 115701 18 54355727 NM_052947 NP_443179 C/T T654I minus 23628680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 27273 rs3826593 HAK 115701 18 54355727 NM_052947 NP_443179 C/T T654I minus 23628680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 27274 rs3826593 HAK 115701 18 54355727 NM_052947 NP_443179 C/T T654I minus 23628680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 18q21.31-q21.32 heart alpha-kinase 27275 rs3826616 SERPINB8 5271 18 59805443 NM_002640 NP_002631 A/G H359R plus 5013098 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.46 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27276 rs3826616 SERPINB8 5271 18 59805443 NM_002640 NP_002631 A/G H359R plus 13612250 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27277 rs3826616 SERPINB8 5271 18 59805443 NM_002640 NP_002631 A/G H359R plus 23532880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27278 rs3826616 SERPINB8 5271 18 59805443 NM_002640 NP_002631 A/G H359R plus 23532880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27279 rs3826616 SERPINB8 5271 18 59805443 NM_002640 NP_002631 A/G H359R plus 23532880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27280 rs3826616 SERPINB8 5271 18 59805443 NM_198833 NP_942130 A/G H359R plus 5013098 738 YUSUKE JBIC-ALLELE Japanese (752) 1490 0.46 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27281 rs3826616 SERPINB8 5271 18 59805443 NM_198833 NP_942130 A/G H359R plus 13612250 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27282 rs3826616 SERPINB8 5271 18 59805443 NM_198833 NP_942130 A/G H359R plus 23532880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27283 rs3826616 SERPINB8 5271 18 59805443 NM_198833 NP_942130 A/G H359R plus 23532880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27284 rs3826616 SERPINB8 5271 18 59805443 NM_198833 NP_942130 A/G H359R plus 23532880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8" 27285 rs3826835 ZNF541 84215 19 52739215 NM_032255 NP_115631 A/T T241S plus 5013317 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 19q13.33 zinc finger protein 541 27286 rs3826838 FUT2 2524 19 53875096 NM_000511 NP_000502 A/G V9I plus 5013320 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.14 107 "HapMap,freq" 19q13.3 fucosyltransferase 2 (secretor status included) 27287 rs3826942 MUM1 84939 19 1311575 NM_032853 NP_116242 C/T G220R minus 6636202 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.28 123 "HapMap,freq,cluster" 19p13.3 melanoma associated antigen (mutated) 1 27288 rs3826942 MUM1 84939 19 1311575 NM_032853 NP_116242 C/T G220R minus 24190653 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,freq,cluster" 19p13.3 melanoma associated antigen (mutated) 1 27289 rs3826942 MUM1 84939 19 1311575 NM_032853 NP_116242 C/T G220R minus 24190653 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,freq,cluster" 19p13.3 melanoma associated antigen (mutated) 1 27290 rs3826942 MUM1 84939 19 1311575 NM_032853 NP_116242 C/T G220R minus 24190653 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "HapMap,freq,cluster" 19p13.3 melanoma associated antigen (mutated) 1 27291 rs3827047 PRKCBP1 23613 20 45338700 NM_012408 NP_036540 G/T E415D minus 5013531 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 107 by freq 20q13.13 protein kinase C binding protein 1 27292 rs3827047 PRKCBP1 23613 20 45338700 NM_183047 NP_898868 G/T E415D minus 5013531 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 107 by freq 20q13.13 protein kinase C binding protein 1 27293 rs3827047 PRKCBP1 23613 20 45338700 NM_183048 NP_898869 G/T E390D minus 5013531 738 YUSUKE JBIC-ALLELE Japanese (752) 1492 0.11 107 by freq 20q13.13 protein kinase C binding protein 1 27294 rs3827103 MC3R 4159 20 54257436 NM_019888 NP_063941 A/G V81I plus 5013587 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.26 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 27295 rs3827103 MC3R 4159 20 54257436 NM_019888 NP_063941 A/G V81I plus 23430185 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 27296 rs3827103 MC3R 4159 20 54257436 NM_019888 NP_063941 A/G V81I plus 23430185 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.34 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 27297 rs3827103 MC3R 4159 20 54257436 NM_019888 NP_063941 A/G V81I plus 23430185 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 20q13.2-q13.3 melanocortin 3 receptor 27298 rs3827522 PRICKLE1 144165 12 41140138 NM_153026 NP_694571 A/G P746S plus 5014012 738 YUSUKE JBIC-ALLELE Japanese (752) 1500 0.08 123 "HapMap,freq,cluster" 12q12 prickle-like 1 (Drosophila) 27299 rs3827522 PRICKLE1 144165 12 41140138 NM_153026 NP_694571 A/G P746S plus 5014012 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 12q12 prickle-like 1 (Drosophila) 27300 rs3827522 PRICKLE1 144165 12 41140138 NM_153026 NP_694571 A/G P746S plus 24013760 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 12q12 prickle-like 1 (Drosophila) 27301 rs3827522 PRICKLE1 144165 12 41140138 NM_153026 NP_694571 A/G P746S plus 24013760 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 12q12 prickle-like 1 (Drosophila) 27302 rs3827522 PRICKLE1 144165 12 41140138 NM_153026 NP_694571 A/G P746S plus 24013760 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 12q12 prickle-like 1 (Drosophila) 27303 rs3827760 EDAR 10913 2 108972119 NM_022336 NP_071731 C/T V370A minus 5014251 738 YUSUKE JBIC-ALLELE Japanese (752) 1496 0.22 123 "by doubleHit,freq,cluster" 2q11-q13 "ectodysplasin 1, anhidrotic receptor" 27304 rs3827760 EDAR 10913 2 108972119 NM_022336 NP_071731 C/T V370A minus 23670642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by doubleHit,freq,cluster" 2q11-q13 "ectodysplasin 1, anhidrotic receptor" 27305 rs3827760 EDAR 10913 2 108972119 NM_022336 NP_071731 C/T V370A minus 23670642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "by doubleHit,freq,cluster" 2q11-q13 "ectodysplasin 1, anhidrotic receptor" 27306 rs3827760 EDAR 10913 2 108972119 NM_022336 NP_071731 C/T V370A minus 23670642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 2q11-q13 "ectodysplasin 1, anhidrotic receptor" 27307 rs3827816 TNC 3371 9 114927751 NM_002160 NP_002151 A/G V605I minus 5014309 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 9q33 tenascin C (hexabrachion) 27308 rs3827816 TNC 3371 9 114927751 NM_002160 NP_002151 A/G V605I minus 24058512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 9q33 tenascin C (hexabrachion) 27309 rs3827816 TNC 3371 9 114927751 NM_002160 NP_002151 A/G V605I minus 24058512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 9q33 tenascin C (hexabrachion) 27310 rs3827816 TNC 3371 9 114927751 NM_002160 NP_002151 A/G V605I minus 24058512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "HapMap,freq,cluster" 9q33 tenascin C (hexabrachion) 27311 rs3828161 SKIP 80309 2 228708475 XM_051221 XP_051221 A/G Q867R minus 23265016 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 27312 rs3828161 SKIP 80309 2 228708475 XM_051221 XP_051221 A/G Q867R minus 23265016 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 27313 rs3828161 SKIP 80309 2 228708475 XM_051221 XP_051221 A/G Q867R minus 23265016 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 27314 rs3828341 SBLF 11037 2 48721055 NM_006873 NP_006864 G/T Q544H plus 5014834 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 107 by freq 2p16.3 stoned B-like factor 27315 rs3828341 SALF 286749 2 48721055 NM_172311 NP_758515 G/T Q544H plus 5014834 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0 107 by freq 2p16.3 stoned B/TFIIA-alpha/beta-like factor 27316 rs3828419 SLITRK3 22865 3 166389508 NM_014926 NP_055741 A/G I605V minus 23930872 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 3q26.1 "SLIT and NTRK-like family, member 3" 27317 rs3828419 SLITRK3 22865 3 166389508 NM_014926 NP_055741 A/G I605V minus 23930872 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 3q26.1 "SLIT and NTRK-like family, member 3" 27318 rs3828419 SLITRK3 22865 3 166389508 NM_014926 NP_055741 A/G I605V minus 23930872 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 3q26.1 "SLIT and NTRK-like family, member 3" 27319 rs3828611 CMYA5 202333 5 79070418 NM_153610 NP_705838 C/G H452Q plus 5015107 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.47 116 "by doubleHit,freq,cluster" 5q14.1 cardiomyopathy associated 5 27320 rs3828741 HTR1E 3354 6 87782393 NM_000865 NP_000856 C/T A208T minus 5015237 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.01 107 by freq 6q14-q15 5-hydroxytryptamine (serotonin) receptor 1E 27321 rs3828743 TSPYL1 7259 6 116707503 XM_371844 XP_371844 A/G P62S plus 5015239 738 YUSUKE JBIC-ALLELE Japanese (752) 1502 0.41 116 "by doubleHit,freq,cluster" 6q22-q23 TSPY-like 1 27322 rs3828855 BYSL 705 6 42008384 NM_004053 NP_004044 A/G P290S minus 5015354 738 YUSUKE JBIC-ALLELE Japanese (752) 1486 0.17 121 "by doubleHit,freq,cluster" 6p21.1 bystin-like 27323 rs3829009 CDCA2 157313 8 25420751 NM_152562 NP_689775 A/T R884S plus 24053958 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 27324 rs3829009 CDCA2 157313 8 25420751 NM_152562 NP_689775 A/T R884S plus 24053958 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 27325 rs3829009 CDCA2 157313 8 25420751 NM_152562 NP_689775 A/T R884S plus 24053958 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 27326 rs3829037 MTSS1 9788 8 125634509 NM_014751 NP_055566 A/G T725A minus 5015539 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,freq" 8p22 metastasis suppressor 1 27327 rs3829037 MTSS1 9788 8 125634509 NM_014751 NP_055566 A/G T725A minus 24533147 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,freq" 8p22 metastasis suppressor 1 27328 rs3829037 MTSS1 9788 8 125634509 NM_014751 NP_055566 A/G T725A minus 24533147 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq" 8p22 metastasis suppressor 1 27329 rs3829037 MTSS1 9788 8 125634509 NM_014751 NP_055566 A/G T725A minus 24533147 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,freq" 8p22 metastasis suppressor 1 27330 rs3829078 CA9 768 9 35669251 NM_001216 NP_001207 A/G Q326R plus 5015580 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 107 "HapMap,freq" 9p13-p12 carbonic anhydrase IX 27331 rs3829125 AKR1C4 1109 10 5237784 NM_001818 NP_001809 C/G S145C minus 5015627 738 YUSUKE JBIC-ALLELE Japanese (752) 1472 0.08 116 "by doubleHit,freq,cluster" 10p15-p14 "aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)" 27332 rs3829241 TPCN2 219931 11 68611939 NM_139075 NP_620714 A/G G734E plus 5015744 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.23 123 "by doubleHit,freq,cluster" 11q13.1-q13.2 two pore segment channel 2 27333 rs3829241 TPCN2 219931 11 68611939 NM_139075 NP_620714 A/G G734E plus 24535915 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q13.1-q13.2 two pore segment channel 2 27334 rs3829241 TPCN2 219931 11 68611939 NM_139075 NP_620714 A/G G734E plus 24535915 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 11q13.1-q13.2 two pore segment channel 2 27335 rs3829241 TPCN2 219931 11 68611939 NM_139075 NP_620714 A/G G734E plus 24535915 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 11q13.1-q13.2 two pore segment channel 2 27336 rs3829295 E2F7 144455 12 75926087 NM_203394 NP_976328 C/T M626V plus 5015798 738 YUSUKE JBIC-ALLELE Japanese (752) 1494 0.02 123 "HapMap,freq" 12q21.1 E2F transcription factor 7 27337 rs3829295 E2F7 144455 12 75926087 NM_203394 NP_976328 C/T M626V plus 5015798 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq" 12q21.1 E2F transcription factor 7 27338 rs3829295 E2F7 144455 12 75926087 NM_203394 NP_976328 C/T M626V plus 23968160 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq" 12q21.1 E2F transcription factor 7 27339 rs3829295 E2F7 144455 12 75926087 NM_203394 NP_976328 C/T M626V plus 23968160 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 12q21.1 E2F transcription factor 7 27340 rs3829295 E2F7 144455 12 75926087 NM_203394 NP_976328 C/T M626V plus 23968160 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,freq" 12q21.1 E2F transcription factor 7 27341 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 16334415 901 AFFY AfAm 10 0.2 123 by freq 15q21-q23 "lipase, hepatic" 27342 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 16334415 902 AFFY Caucasian 24 1 123 by freq 15q21-q23 "lipase, hepatic" 27343 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 16334415 903 AFFY Asian 12 1 123 by freq 15q21-q23 "lipase, hepatic" 27344 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 16334415 904 AFFY CEPH 10 0.4 123 by freq 15q21-q23 "lipase, hepatic" 27345 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 16334415 905 AFFY PDpanel 46 0.04 123 by freq 15q21-q23 "lipase, hepatic" 27346 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 23811376 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 15q21-q23 "lipase, hepatic" 27347 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 23811376 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 15q21-q23 "lipase, hepatic" 27348 rs3829462 LIPC 3990 15 56640371 NM_000236 NP_000227 G/T F356L minus 23811376 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 15q21-q23 "lipase, hepatic" 27349 rs3829655 SIGLEC5 8778 19 56807457 NM_003830 NP_003821 C/G P499A minus 5016158 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 120 "HapMap,freq,cluster" 19q13.3 sialic acid binding Ig-like lectin 5 27350 rs3829658 SIGLECL1 89858 19 56692484 NM_033329 NP_201586 C/T T360M minus 5016161 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.47 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27351 rs3829658 SIGLECL1 89858 19 56692484 NM_033329 NP_201586 C/T T360M minus 12460850 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27352 rs3829658 SIGLECL1 89858 19 56692484 NM_033329 NP_201586 C/T T360M minus 23813006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.31 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27353 rs3829658 SIGLECL1 89858 19 56692484 NM_033329 NP_201586 C/T T360M minus 23813006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27354 rs3829658 SIGLECL1 89858 19 56692484 NM_033329 NP_201586 C/T T360M minus 23813006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.24 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27355 rs3829658 SIGLECL1 89858 19 56692484 NM_053003 NP_443729 C/T T478M minus 5016161 738 YUSUKE JBIC-ALLELE Japanese (752) 1488 0.47 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27356 rs3829658 SIGLECL1 89858 19 56692484 NM_053003 NP_443729 C/T T478M minus 12460850 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27357 rs3829658 SIGLECL1 89858 19 56692484 NM_053003 NP_443729 C/T T478M minus 23813006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.31 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27358 rs3829658 SIGLECL1 89858 19 56692484 NM_053003 NP_443729 C/T T478M minus 23813006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27359 rs3829658 SIGLECL1 89858 19 56692484 NM_053003 NP_443729 C/T T478M minus 23813006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.24 123 "HapMap,doubleHit,freq,cluster" 19q13.4 SIGLEC-like 1 27360 rs3829659 SIGLEC8 27181 19 56649368 NM_014442 NP_055257 A/G R388G minus 5016162 738 YUSUKE JBIC-ALLELE Japanese (752) 752 0.32 119 "HapMap,doubleHit,freq,cluster" 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 27361 rs3829659 SIGLEC8 27181 19 56649368 NM_014442 NP_055257 A/G R388G minus 14703015 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 119 "HapMap,doubleHit,freq,cluster" 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 27362 rs3829701 151011 2 109689567 NM_144710 NP_653311 C/T L189P minus 5016205 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q13 septin 10 27363 rs3829701 151011 2 109689567 NM_178584 NP_848699 C/T L166P minus 5016205 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 107 HapMap 2q13 septin 10 27364 rs3829706 LRRK1 79705 15 99423368 NM_024652 NP_078928 A/G M1030V plus 5016210 738 YUSUKE JBIC-ALLELE Japanese (752) 1498 0.04 107 by freq 15q26.3 leucine-rich repeat kinase 1 27365 rs3829767 SYNE2 23224 14 63589208 NM_015180 NP_055995 A/G I2941V plus 5016271 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 27366 rs3829767 SYNE2 23224 14 63589208 NM_015180 NP_055995 A/G I2941V plus 23647972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 27367 rs3829767 SYNE2 23224 14 63589208 NM_015180 NP_055995 A/G I2941V plus 23647972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 27368 rs3829767 SYNE2 23224 14 63589208 NM_015180 NP_055995 A/G I2941V plus 23647972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 27369 rs3829817 FBN3 84467 19 8067450 NM_032447 NP_115823 A/G R1806Q minus 5016321 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,freq,cluster" 19p13 fibrillin 3 27370 rs3829817 FBN3 84467 19 8067450 NM_032447 NP_115823 A/G R1806Q minus 23560809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 19p13 fibrillin 3 27371 rs3829817 FBN3 84467 19 8067450 NM_032447 NP_115823 A/G R1806Q minus 23560809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,freq,cluster" 19p13 fibrillin 3 27372 rs3829817 FBN3 84467 19 8067450 NM_032447 NP_115823 A/G R1806Q minus 23560809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 19p13 fibrillin 3 27373 rs3829891 FNDC1 84624 6 159631290 XM_027658 XP_027658 A/C T333K plus 10319285 1303 SEQUENOM CEPH CEPH (92) 92 0.05 121 "by doubleHit,freq,cluster" 6q25 fibronectin type III domain containing 1 27374 rs3830138 CPNE5 57699 6 36818060 NM_020939 NP_065990 C/T R582H plus 5016642 738 YUSUKE JBIC-ALLELE Japanese (752) 1458 0.01 107 by freq 6p21.1 copine V 27375 rs3842787 PTGS1 5742 9 122213061 NM_000962 NP_000953 C/T P17L plus 5105621 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 0.11 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27376 rs3842787 PTGS1 5742 9 122213061 NM_000962 NP_000953 C/T P17L plus 5105621 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.06 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27377 rs3842787 PTGS1 5742 9 122213061 NM_000962 NP_000953 C/T P17L plus 14327257 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.13 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27378 rs3842787 PTGS1 5742 9 122213061 NM_000962 NP_000953 C/T P17L plus 14327257 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.09 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27379 rs3842787 PTGS1 5742 9 122213061 NM_000962 NP_000953 C/T P17L plus 14327257 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27380 rs3842787 PTGS1 5742 9 122213061 NM_080591 NP_542158 C/T P17L plus 5105621 747 JBIGLER CORIELL_HD100AA CORIELL African-American (100) 96 0.11 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27381 rs3842787 PTGS1 5742 9 122213061 NM_080591 NP_542158 C/T P17L plus 5105621 748 JBIGLER CORIELL_HD100CAU CORIELL Caucasian (100) 94 0.06 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27382 rs3842787 PTGS1 5742 9 122213061 NM_080591 NP_542158 C/T P17L plus 14327257 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.13 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27383 rs3842787 PTGS1 5742 9 122213061 NM_080591 NP_542158 C/T P17L plus 14327257 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.09 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27384 rs3842787 PTGS1 5742 9 122213061 NM_080591 NP_542158 C/T P17L plus 14327257 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 119 "HapMap,freq,cluster" 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 27385 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 1329765 901 AFFY AfAm 12 0.17 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27386 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 1329765 902 AFFY Caucasian 24 0.04 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27387 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 1329765 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27388 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 1329765 904 AFFY CEPH 12 0.25 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27389 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 1329765 905 AFFY PDpanel 48 0.08 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27390 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 23228712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27391 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 23228712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27392 rs3847262 NYD-SP25 89882 9 6318947 NM_033516 NP_277051 C/T F118L plus 23228712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 9p24.1 protein kinase NYD-SP25 27393 rs3847531 FAT3 120114 11 92174090 XM_061871 XP_061871 A/G I1251V plus 5304317 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 27394 rs3847531 FAT3 120114 11 92174090 XM_061871 XP_061871 A/G I1251V plus 23605799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 27395 rs3847531 FAT3 120114 11 92174090 XM_061871 XP_061871 A/G I1251V plus 23605799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 27396 rs3847531 FAT3 120114 11 92174090 XM_061871 XP_061871 A/G I1251V plus 23605799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 27397 rs3848519 FECH 2235 18 53398334 NM_000140 NP_000131 A/C G55C plus 23560776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 18q21.3 ferrochelatase (protoporphyria) 27398 rs3848519 FECH 2235 18 53398334 NM_000140 NP_000131 A/C G55C plus 23560776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 18q21.3 ferrochelatase (protoporphyria) 27399 rs3848519 FECH 2235 18 53398334 NM_000140 NP_000131 A/C G55C plus 23560776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 18q21.3 ferrochelatase (protoporphyria) 27400 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 1465069 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 1 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27401 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 1465069 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 24 0.38 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27402 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 1465069 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 14 1 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27403 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 1465069 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27404 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 23411762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27405 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 23411762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27406 rs3848568 CEACAM4 1089 19 46824033 NM_001817 NP_001808 A/G K69R minus 23411762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 4 27407 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 84149 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.02 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27408 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 84149 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 82 0.12 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27409 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 84149 640 TSC-CSHL TSC_42_A TSC Asian (42) 84 1 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27410 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 84149 771 TSC-CSHL SC_12_A CORIELL Asian (12) 16 1 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27411 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 84149 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 1 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27412 rs3848666 PRODH2 58510 19 40995504 NM_021232 NP_067055 C/G P91R plus 5445596 1303 SEQUENOM CEPH CEPH (92) 92 0.08 111 by doubleHit 19q13.1 proline dehydrogenase (oxidase) 2 27413 rs3850114 ZNF267 10308 16 31834120 NM_003414 NP_003405 C/T C350Y minus 5373067 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,freq,cluster" 16p11.2 zinc finger protein 267 27414 rs3850114 ZNF267 10308 16 31834120 NM_003414 NP_003405 C/T C350Y minus 5373067 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,doubleHit,freq,cluster" 16p11.2 zinc finger protein 267 27415 rs3850114 ZNF267 10308 16 31834120 NM_003414 NP_003405 C/T C350Y minus 23763902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 16p11.2 zinc finger protein 267 27416 rs3850114 ZNF267 10308 16 31834120 NM_003414 NP_003405 C/T C350Y minus 23763902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 16p11.2 zinc finger protein 267 27417 rs3850114 ZNF267 10308 16 31834120 NM_003414 NP_003405 C/T C350Y minus 23763902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 16p11.2 zinc finger protein 267 27418 rs3851294 DustyPK 25778 1 201862070 NM_015375 NP_056190 A/G C641R plus 5241354 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 by freq 1q32.1 dusty protein kinase 27419 rs3851294 DustyPK 25778 1 201862070 NM_015375 NP_056190 A/G C641R plus 24640921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1q32.1 dusty protein kinase 27420 rs3851294 DustyPK 25778 1 201862070 NM_015375 NP_056190 A/G C641R plus 24640921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q32.1 dusty protein kinase 27421 rs3851294 DustyPK 25778 1 201862070 NM_015375 NP_056190 A/G C641R plus 24640921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 dusty protein kinase 27422 rs3851294 DustyPK 25778 1 201862070 NM_199462 NP_955749 A/G C641R plus 5241354 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 by freq 1q32.1 dusty protein kinase 27423 rs3851294 DustyPK 25778 1 201862070 NM_199462 NP_955749 A/G C641R plus 24640921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1q32.1 dusty protein kinase 27424 rs3851294 DustyPK 25778 1 201862070 NM_199462 NP_955749 A/G C641R plus 24640921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q32.1 dusty protein kinase 27425 rs3851294 DustyPK 25778 1 201862070 NM_199462 NP_955749 A/G C641R plus 24640921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 dusty protein kinase 27426 rs3859866 MYO18B 84700 22 24491454 NM_032608 NP_115997 C/G W547C plus 24114064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 27427 rs3859866 MYO18B 84700 22 24491454 NM_032608 NP_115997 C/G W547C plus 24114064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 27428 rs3859866 MYO18B 84700 22 24491454 NM_032608 NP_115997 C/G W547C plus 24114064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 27429 rs3862618 ROBO3 64221 11 124247575 XM_370663 XP_370663 C/T R575H minus 5155031 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 123 "HapMap,doubleHit,freq,cluster" 11q24.2 "roundabout, axon guidance receptor, homolog 3 (Drosophila)" 27430 rs3862618 ROBO3 64221 11 124247575 XM_370663 XP_370663 C/T R575H minus 24124289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 11q24.2 "roundabout, axon guidance receptor, homolog 3 (Drosophila)" 27431 rs3862618 ROBO3 64221 11 124247575 XM_370663 XP_370663 C/T R575H minus 24124289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,freq,cluster" 11q24.2 "roundabout, axon guidance receptor, homolog 3 (Drosophila)" 27432 rs3862618 ROBO3 64221 11 124247575 XM_370663 XP_370663 C/T R575H minus 24124289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 11q24.2 "roundabout, axon guidance receptor, homolog 3 (Drosophila)" 27433 rs3864017 FANCD2 2177 3 10081532 NM_033084 NP_149075 A/G P714L minus 5360912 1303 SEQUENOM CEPH CEPH (92) 92 0.48 123 by freq 3p26 "Fanconi anemia, complementation group D2" 27434 rs3874655 PKD1 5310 16 2096196 NM_000296 NP_000287 A/G S2534G minus 24810299 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 by freq 16p13.3 polycystic kidney disease 1 (autosomal dominant) 27435 rs3881953 PPP1R12B 4660 1 199259678 NM_002481 NP_002472 A/G R836K plus 5366117 901 AFFY AfAm 5 0.5 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27436 rs3881953 PPP1R12B 4660 1 199259678 NM_002481 NP_002472 A/G R836K plus 5366117 902 AFFY Caucasian 24 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27437 rs3881953 PPP1R12B 4660 1 199259678 NM_002481 NP_002472 A/G R836K plus 5366117 903 AFFY Asian 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27438 rs3881953 PPP1R12B 4660 1 199259678 NM_002481 NP_002472 A/G R836K plus 5366117 904 AFFY CEPH 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27439 rs3881953 PPP1R12B 4660 1 199259678 NM_002481 NP_002472 A/G R836K plus 5366117 905 AFFY PDpanel 48 0.23 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27440 rs3881953 PPP1R12B 4660 1 199259678 NM_032103 NP_115286 A/G R62K plus 5366117 901 AFFY AfAm 5 0.5 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27441 rs3881953 PPP1R12B 4660 1 199259678 NM_032103 NP_115286 A/G R62K plus 5366117 902 AFFY Caucasian 24 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27442 rs3881953 PPP1R12B 4660 1 199259678 NM_032103 NP_115286 A/G R62K plus 5366117 903 AFFY Asian 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27443 rs3881953 PPP1R12B 4660 1 199259678 NM_032103 NP_115286 A/G R62K plus 5366117 904 AFFY CEPH 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27444 rs3881953 PPP1R12B 4660 1 199259678 NM_032103 NP_115286 A/G R62K plus 5366117 905 AFFY PDpanel 48 0.23 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27445 rs3881953 PPP1R12B 4660 1 199259678 NM_032104 NP_115287 A/G R62K plus 5366117 901 AFFY AfAm 5 0.5 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27446 rs3881953 PPP1R12B 4660 1 199259678 NM_032104 NP_115287 A/G R62K plus 5366117 902 AFFY Caucasian 24 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27447 rs3881953 PPP1R12B 4660 1 199259678 NM_032104 NP_115287 A/G R62K plus 5366117 903 AFFY Asian 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27448 rs3881953 PPP1R12B 4660 1 199259678 NM_032104 NP_115287 A/G R62K plus 5366117 904 AFFY CEPH 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27449 rs3881953 PPP1R12B 4660 1 199259678 NM_032104 NP_115287 A/G R62K plus 5366117 905 AFFY PDpanel 48 0.23 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27450 rs3881953 PPP1R12B 4660 1 199259678 NM_032105 NP_115288 A/G R836K plus 5366117 901 AFFY AfAm 5 0.5 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27451 rs3881953 PPP1R12B 4660 1 199259678 NM_032105 NP_115288 A/G R836K plus 5366117 902 AFFY Caucasian 24 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27452 rs3881953 PPP1R12B 4660 1 199259678 NM_032105 NP_115288 A/G R836K plus 5366117 903 AFFY Asian 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27453 rs3881953 PPP1R12B 4660 1 199259678 NM_032105 NP_115288 A/G R836K plus 5366117 904 AFFY CEPH 12 0.25 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27454 rs3881953 PPP1R12B 4660 1 199259678 NM_032105 NP_115288 A/G R836K plus 5366117 905 AFFY PDpanel 48 0.23 108 by freq 1q32.1 "protein phosphatase 1, regulatory (inhibitor) subunit 12B" 27455 rs3885179 ZNF333 84449 19 14688830 NM_032433 NP_115809 G/T A251E minus 24727 638 TSC-CSHL TSC_42_AA TSC African American (42) 82 0.05 111 by freq 19p13 zinc finger protein 333 27456 rs3885179 ZNF333 84449 19 14688830 NM_032433 NP_115809 G/T A251E minus 24727 639 TSC-CSHL TSC_42_C TSC Caucasian (42) 84 0.05 111 by freq 19p13 zinc finger protein 333 27457 rs3885179 ZNF333 84449 19 14688830 NM_032433 NP_115809 G/T A251E minus 24727 640 TSC-CSHL TSC_42_A TSC Asian (42) 82 0.06 111 by freq 19p13 zinc finger protein 333 27458 rs3887873 POMT1 10585 9 131414989 NM_007171 NP_009102 C/T Q251X plus 24808884 1303 SEQUENOM CEPH CEPH (92) 184 0.25 123 "by doubleHit,freq,cluster" 9q34.1 protein-O-mannosyltransferase 1 27459 rs3892221 UGT1A4 54657 2 234409497 NM_007120 NP_009051 C/T R11W plus 1292957 1303 SEQUENOM CEPH CEPH (92) 92 0.26 111 by freq 2q37 "UDP glycosyltransferase 1 family, polypeptide A4" 27460 rs3894129 NYD-SP11 83889 19 43076261 XM_371164 XP_371164 C/G G602A plus 1325626 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 27461 rs3894129 NYD-SP11 83889 19 43076261 XM_371164 XP_371164 C/G G602A plus 24575810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 27462 rs3894129 NYD-SP11 83889 19 43076261 XM_371164 XP_371164 C/G G602A plus 24575810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 27463 rs3894129 NYD-SP11 83889 19 43076261 XM_371164 XP_371164 C/G G602A plus 24575810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 27464 rs3894194 GSDM1 284110 17 35375519 NM_178171 NP_835465 C/T R18Q minus 1327557 771 TSC-CSHL SC_12_A CORIELL Asian (12) 24 0.46 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin 27465 rs3894194 GSDM1 284110 17 35375519 NM_178171 NP_835465 C/T R18Q minus 1327557 772 TSC-CSHL SC_12_AA CORIELL African-American (12) 22 0.32 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin 27466 rs3894194 GSDM1 284110 17 35375519 NM_178171 NP_835465 C/T R18Q minus 1327557 773 TSC-CSHL SC_12_C CORIELL Caucasian (12) 24 0.46 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin 27467 rs3894194 GSDM1 284110 17 35375519 NM_178171 NP_835465 C/T R18Q minus 1327557 774 TSC-CSHL SC_95_C CORIELL Caucasian (95) 92 0.48 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin 27468 rs3894194 GSDM1 284110 17 35375519 NM_178171 NP_835465 C/T R18Q minus 1327557 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 17q21.2 gasdermin 27469 rs3894197 OR10G7 390265 11 123414905 XM_372437 XP_372437 C/G T5S minus 1327567 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.28 121 "HapMap,doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 10, subfamily G, member 7" 27470 rs3894211 QSCN6 5768 1 176867358 NM_002826 NP_002817 C/T N114S minus 1328002 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 108 HapMap 1q24 quiescin Q6 27471 rs3894211 QSCN6 5768 1 176867358 NM_002826 NP_002817 C/T N114S minus 1328002 1303 SEQUENOM CEPH CEPH (92) 92 1 108 HapMap 1q24 quiescin Q6 27472 rs3896260 CATSPER3 347732 5 134371665 NM_178019 NP_821138 G/T N204K plus 23738586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5q31.2 "cation channel, sperm associated 3" 27473 rs3896260 CATSPER3 347732 5 134371665 NM_178019 NP_821138 G/T N204K plus 23738586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,freq,cluster" 5q31.2 "cation channel, sperm associated 3" 27474 rs3896260 CATSPER3 347732 5 134371665 NM_178019 NP_821138 G/T N204K plus 23738586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 "by doubleHit,freq,cluster" 5q31.2 "cation channel, sperm associated 3" 27475 rs3896930 TUBA4 80086 2 219961658 NM_025019 NP_079295 A/G H153R plus 1378493 1303 SEQUENOM CEPH CEPH (92) 92 0.11 108 by freq 2q36.1 "tubulin, alpha 4" 27476 rs3897433 MR1 3140 1 177749965 NM_001531 NP_001522 A/G R63Q plus 24810555 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 by freq 1q25.3 "major histocompatibility complex, class I-related" 27477 rs3897434 MR1 3140 1 177750007 NM_001531 NP_001522 C/T A77V plus 24810556 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 by freq 1q25.3 "major histocompatibility complex, class I-related" 27478 rs3898166 PAIP2 51247 5 138728221 NM_016480 NP_057564 C/T E70K minus 6074755 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 HapMap 5q31.3 poly(A) binding protein interacting protein 2 27479 rs3902411 PLEC1 5339 8 145096448 NM_201380 NP_958782 C/G V139L minus 1508554 1303 SEQUENOM CEPH CEPH (92) 92 0.09 108 by freq 8q24 "plectin 1, intermediate filament binding protein 500kDa" 27480 rs3910433 RNF6 6049 13 25691644 NM_005977 NP_005968 A/G N48S minus 24009887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27481 rs3910433 RNF6 6049 13 25691644 NM_005977 NP_005968 A/G N48S minus 24009887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27482 rs3910433 RNF6 6049 13 25691644 NM_005977 NP_005968 A/G N48S minus 24009887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27483 rs3910433 RNF6 6049 13 25691644 NM_183043 NP_898864 A/G N48S minus 24009887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27484 rs3910433 RNF6 6049 13 25691644 NM_183043 NP_898864 A/G N48S minus 24009887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27485 rs3910433 RNF6 6049 13 25691644 NM_183043 NP_898864 A/G N48S minus 24009887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27486 rs3910433 RNF6 6049 13 25691644 NM_183044 NP_898865 A/G N48S minus 24009887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27487 rs3910433 RNF6 6049 13 25691644 NM_183044 NP_898865 A/G N48S minus 24009887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27488 rs3910433 RNF6 6049 13 25691644 NM_183044 NP_898865 A/G N48S minus 24009887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27489 rs3910433 RNF6 6049 13 25691644 NM_183045 NP_898866 A/G N48S minus 24009887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27490 rs3910433 RNF6 6049 13 25691644 NM_183045 NP_898866 A/G N48S minus 24009887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27491 rs3910433 RNF6 6049 13 25691644 NM_183045 NP_898866 A/G N48S minus 24009887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 13q12.2 ring finger protein (C3H2C3 type) 6 27492 rs3911730 RTTN 25914 18 66022323 NM_173630 NP_775901 A/C S126A plus 23528351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 27493 rs3911730 RTTN 25914 18 66022323 NM_173630 NP_775901 A/C S126A plus 23528351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 27494 rs3911730 RTTN 25914 18 66022323 NM_173630 NP_775901 A/C S126A plus 23528351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 27495 rs3911893 SKIV2L 6499 6 32043546 NM_006929 NP_008860 C/T D887N minus 24801118 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 6p21 superkiller viralicidic activity 2-like (S. cerevisiae) 27496 rs3915806 ZNF142 7701 2 219328647 XM_376172 XP_376172 A/C T1984P minus 2393062 1303 SEQUENOM CEPH CEPH (92) 92 0.04 108 by freq 2q34-q35 zinc finger protein 142 (clone pHZ-49) 27497 rs3917422 SELE 6401 1 166430418 NM_000450 NP_000441 A/C Q257P minus 5111420 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 27498 rs3917422 SELE 6401 1 166430418 NM_000450 NP_000441 A/C Q257P minus 23189803 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 27499 rs3917422 SELE 6401 1 166430418 NM_000450 NP_000441 A/C Q257P minus 23189803 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 27500 rs3917422 SELE 6401 1 166430418 NM_000450 NP_000441 A/C Q257P minus 23189803 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 1q22-q25 selectin E (endothelial adhesion molecule 1) 27501 rs3917594 PON1 5444 7 94582090 NM_000446 NP_000437 A/G W194X minus 5111675 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 121 "by cluster,freq" 7q21.3 paraoxonase 1 27502 rs3917594 PON1 5444 7 94582090 NM_000446 NP_000437 A/G W194X minus 16338590 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 64 0.02 121 "by cluster,freq" 7q21.3 paraoxonase 1 27503 rs3917724 SELP 6403 1 166313253 NM_003005 NP_002996 C/T T274I minus 5111839 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.09 121 "by cluster,freq" 1q22-q25 "selectin P (granule membrane protein 140kDa, antigen CD62)" 27504 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 5112131 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27505 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 12675374 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27506 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 12675374 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27507 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 12675374 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27508 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 12675374 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27509 rs3917973 CSF3R 1441 1 36607362 NM_000760 NP_000751 C/T M231T minus 12675374 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27510 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 5112131 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27511 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 12675374 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27512 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 12675374 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27513 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 12675374 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27514 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 12675374 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27515 rs3917973 CSF3R 1441 1 36607362 NM_156038 NP_724780 C/T M231T minus 12675374 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27516 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 5112131 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27517 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 12675374 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27518 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 12675374 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27519 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 12675374 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27520 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 12675374 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27521 rs3917973 CSF3R 1441 1 36607362 NM_156039 NP_724781 C/T M231T minus 12675374 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27522 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 5112131 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27523 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 12675374 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27524 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 12675374 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.02 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27525 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 12675374 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27526 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 12675374 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27527 rs3917973 CSF3R 1441 1 36607362 NM_172313 NP_758519 C/T M231T minus 12675374 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27528 rs3917974 CSF3R 1441 1 36606794 NM_000760 NP_000751 A/G Q346R minus 5112132 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 108 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27529 rs3917974 CSF3R 1441 1 36606794 NM_156038 NP_724780 A/G Q346R minus 5112132 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 108 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27530 rs3917974 CSF3R 1441 1 36606794 NM_156039 NP_724781 A/G Q346R minus 5112132 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 108 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27531 rs3917974 CSF3R 1441 1 36606794 NM_172313 NP_758519 A/G Q346R minus 5112132 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 108 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27532 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 5112149 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.25 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27533 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 12675373 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27534 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 12675373 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27535 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 12675373 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27536 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 12675373 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27537 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 12675373 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27538 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 23171937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27539 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 23171937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27540 rs3917991 CSF3R 1441 1 36603898 NM_000760 NP_000751 C/G D510H minus 23171937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27541 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 5112149 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.25 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27542 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 12675373 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27543 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 12675373 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27544 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 12675373 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27545 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 12675373 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27546 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 12675373 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27547 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 23171937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27548 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 23171937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27549 rs3917991 CSF3R 1441 1 36603898 NM_156038 NP_724780 C/G D510H minus 23171937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27550 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 5112149 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.25 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27551 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 12675373 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27552 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 12675373 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27553 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 12675373 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27554 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 12675373 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27555 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 12675373 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27556 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 23171937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27557 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 23171937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27558 rs3917991 CSF3R 1441 1 36603898 NM_156039 NP_724781 C/G D510H minus 23171937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27559 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 5112149 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.25 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27560 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 12675373 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27561 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 12675373 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27562 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 12675373 776 SNP500CANCER AFR1 African / African-American (24) 48 0.13 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27563 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 12675373 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27564 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 12675373 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27565 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 23171937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27566 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 23171937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27567 rs3917991 CSF3R 1441 1 36603898 NM_172313 NP_758519 C/G D510H minus 23171937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27568 rs3918001 CSF3R 1441 1 36601596 NM_156039 NP_724781 A/G G683R minus 5112160 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.24 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27569 rs3918001 CSF3R 1441 1 36601596 NM_156039 NP_724781 A/G G683R minus 23171897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27570 rs3918001 CSF3R 1441 1 36601596 NM_156039 NP_724781 A/G G683R minus 23171897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27571 rs3918001 CSF3R 1441 1 36601596 NM_156039 NP_724781 A/G G683R minus 23171897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27572 rs3918021 CSF3R 1441 1 36601551 NM_156039 NP_724781 C/T R698C minus 5112180 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27573 rs3918021 CSF3R 1441 1 36601551 NM_156039 NP_724781 C/T R698C minus 24253571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27574 rs3918021 CSF3R 1441 1 36601551 NM_156039 NP_724781 C/T R698C minus 24253571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27575 rs3918021 CSF3R 1441 1 36601551 NM_156039 NP_724781 C/T R698C minus 24253571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p35-p34.3 colony stimulating factor 3 receptor (granulocyte) 27576 rs3918143 BRD2 6046 6 33053603 NM_005104 NP_005095 C/T A474V plus 24169522 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 bromodomain containing 2 27577 rs3918143 BRD2 6046 6 33053603 NM_005104 NP_005095 C/T A474V plus 24169522 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 bromodomain containing 2 27578 rs3918143 BRD2 6046 6 33053603 NM_005104 NP_005095 C/T A474V plus 24169522 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 bromodomain containing 2 27579 rs3918166 NOS3 4846 7 150131204 NM_000603 NP_000594 A/G R112Q plus 5112351 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 117 "HapMap,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 27580 rs3918166 NOS3 4846 7 150131204 NM_000603 NP_000594 A/G R112Q plus 5112351 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 27581 rs3918166 NOS3 4846 7 150131204 NM_000603 NP_000594 A/G R112Q plus 12579997 889 PHARMGKB_PARC PA128275074 94 0.04 117 "HapMap,freq,cluster" 7q36 nitric oxide synthase 3 (endothelial cell) 27582 rs3918201 NOS3 4846 7 150144992 NM_000603 NP_000594 G/T R885M plus 5112406 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 117 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27583 rs3918201 NOS3 4846 7 150144992 NM_000603 NP_000594 G/T R885M plus 12580085 889 PHARMGKB_PARC PA128275074 94 0.02 117 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27584 rs3918234 NOS3 4846 7 150145683 NM_000603 NP_000594 A/T Q982L plus 5112449 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27585 rs3918234 NOS3 4846 7 150145683 NM_000603 NP_000594 A/T Q982L plus 12580091 889 PHARMGKB_PARC PA128275074 94 0.01 123 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27586 rs3918234 NOS3 4846 7 150145683 NM_000603 NP_000594 A/T Q982L plus 24457964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27587 rs3918234 NOS3 4846 7 150145683 NM_000603 NP_000594 A/T Q982L plus 24457964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 1 123 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27588 rs3918234 NOS3 4846 7 150145683 NM_000603 NP_000594 A/T Q982L plus 24457964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q36 nitric oxide synthase 3 (endothelial cell) 27589 rs3918248 MMP9 4318 20 44071031 NM_004994 NP_004985 C/T A20V plus 5112463 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 108 by freq 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27590 rs3918248 MMP9 4318 20 44071031 NM_004994 NP_004985 C/T A20V plus 5112463 1303 SEQUENOM CEPH CEPH (92) 92 0.01 108 by freq 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27591 rs3918252 MMP9 4318 20 44072538 NM_004994 NP_004985 C/G N127K plus 5112467 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27592 rs3918252 MMP9 4318 20 44072538 NM_004994 NP_004985 C/G N127K plus 16338509 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 20 0.1 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27593 rs3918252 MMP9 4318 20 44072538 NM_004994 NP_004985 C/G N127K plus 23574505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27594 rs3918252 MMP9 4318 20 44072538 NM_004994 NP_004985 C/G N127K plus 23574505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27595 rs3918252 MMP9 4318 20 44072538 NM_004994 NP_004985 C/G N127K plus 23574505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q11.2-q13.1 "matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)" 27596 rs3919907 OR5T2 219464 11 55757176 XM_166820 XP_166820 A/C S21Y minus 24182292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 2" 27597 rs3919907 OR5T2 219464 11 55757176 XM_166820 XP_166820 A/C S21Y minus 24182292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 2" 27598 rs3919907 OR5T2 219464 11 55757176 XM_166820 XP_166820 A/C S21Y minus 24182292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 2" 27599 rs3922210 DDX5 1655 17 59929108 NM_004396 NP_004387 A/C E335D plus 5152871 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 17q21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 27600 rs3922872 ALG12 79087 22 48618749 NM_024105 NP_077010 C/T I393V plus 5153857 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq" 22q13.33 "asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)" 27601 rs3922872 ALG12 79087 22 48618749 NM_024105 NP_077010 C/T I393V plus 24557888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,freq" 22q13.33 "asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)" 27602 rs3922872 ALG12 79087 22 48618749 NM_024105 NP_077010 C/T I393V plus 24557888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq" 22q13.33 "asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)" 27603 rs3922872 ALG12 79087 22 48618749 NM_024105 NP_077010 C/T I393V plus 24557888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "HapMap,doubleHit,freq" 22q13.33 "asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)" 27604 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 7987553 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27605 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 7987553 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27606 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 7987553 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27607 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 23715763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27608 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 23715763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27609 rs3923647 TLR1 7096 4 38622105 NM_003263 NP_003254 A/T H305L minus 23715763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 27610 rs3924999 NRG1 3084 8 32572900 NM_004495 NP_004486 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27611 rs3924999 NRG1 3084 8 32572900 NM_004495 NP_004486 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27612 rs3924999 NRG1 3084 8 32572900 NM_004495 NP_004486 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27613 rs3924999 NRG1 3084 8 32572900 NM_004495 NP_004486 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27614 rs3924999 NRG1 3084 8 32572900 NM_013956 NP_039250 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27615 rs3924999 NRG1 3084 8 32572900 NM_013956 NP_039250 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27616 rs3924999 NRG1 3084 8 32572900 NM_013956 NP_039250 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27617 rs3924999 NRG1 3084 8 32572900 NM_013956 NP_039250 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27618 rs3924999 NRG1 3084 8 32572900 NM_013957 NP_039251 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27619 rs3924999 NRG1 3084 8 32572900 NM_013957 NP_039251 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27620 rs3924999 NRG1 3084 8 32572900 NM_013957 NP_039251 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27621 rs3924999 NRG1 3084 8 32572900 NM_013957 NP_039251 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27622 rs3924999 NRG1 3084 8 32572900 NM_013958 NP_039252 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27623 rs3924999 NRG1 3084 8 32572900 NM_013958 NP_039252 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27624 rs3924999 NRG1 3084 8 32572900 NM_013958 NP_039252 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27625 rs3924999 NRG1 3084 8 32572900 NM_013958 NP_039252 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27626 rs3924999 NRG1 3084 8 32572900 NM_013960 NP_039254 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27627 rs3924999 NRG1 3084 8 32572900 NM_013960 NP_039254 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27628 rs3924999 NRG1 3084 8 32572900 NM_013960 NP_039254 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27629 rs3924999 NRG1 3084 8 32572900 NM_013960 NP_039254 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27630 rs3924999 NRG1 3084 8 32572900 NM_013961 NP_039255 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27631 rs3924999 NRG1 3084 8 32572900 NM_013961 NP_039255 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27632 rs3924999 NRG1 3084 8 32572900 NM_013961 NP_039255 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27633 rs3924999 NRG1 3084 8 32572900 NM_013961 NP_039255 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27634 rs3924999 NRG1 3084 8 32572900 NM_013964 NP_039258 C/T R38Q minus 16338661 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 74 0.38 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27635 rs3924999 NRG1 3084 8 32572900 NM_013964 NP_039258 C/T R38Q minus 24486489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27636 rs3924999 NRG1 3084 8 32572900 NM_013964 NP_039258 C/T R38Q minus 24486489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27637 rs3924999 NRG1 3084 8 32572900 NM_013964 NP_039258 C/T R38Q minus 24486489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21-p12 neuregulin 1 27638 rs3931036 COG4 25839 16 69105798 NM_015386 NP_056201 C/T T158I minus 24573721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27639 rs3931036 COG4 25839 16 69105798 NM_015386 NP_056201 C/T T158I minus 24573721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27640 rs3931036 COG4 25839 16 69105798 NM_015386 NP_056201 C/T T158I minus 24573721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27641 rs3931036 COG4 25839 16 69105798 NM_145818 NP_665817 C/T T158I minus 24573721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27642 rs3931036 COG4 25839 16 69105798 NM_145818 NP_665817 C/T T158I minus 24573721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27643 rs3931036 COG4 25839 16 69105798 NM_145818 NP_665817 C/T T158I minus 24573721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q22.1 component of oligomeric golgi complex 4 27644 rs3935209 OPLAH 26873 8 145185229 XM_291266 XP_291266 G/T S380R plus 5193200 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,doubleHit,freq,cluster" 8q24.3 5-oxoprolinase (ATP-hydrolysing) 27645 rs3943978 SKIIP 22938 14 77271062 NM_012245 NP_036377 A/G S252F plus 5213722 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 14q24.3 SKI interacting protein 27646 rs3948463 SP110 3431 2 230862365 NM_004509 NP_004500 A/G M579I minus 24328317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 2q37.1 SP110 nuclear body protein 27647 rs3948463 SP110 3431 2 230862365 NM_004509 NP_004500 A/G M579I minus 24328317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2q37.1 SP110 nuclear body protein 27648 rs3948463 SP110 3431 2 230862365 NM_004509 NP_004500 A/G M579I minus 24328317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q37.1 SP110 nuclear body protein 27649 rs3948463 SP110 3431 2 230862365 NM_080424 NP_536349 A/G M579I minus 24328317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 2q37.1 SP110 nuclear body protein 27650 rs3948463 SP110 3431 2 230862365 NM_080424 NP_536349 A/G M579I minus 24328317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2q37.1 SP110 nuclear body protein 27651 rs3948463 SP110 3431 2 230862365 NM_080424 NP_536349 A/G M579I minus 24328317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q37.1 SP110 nuclear body protein 27652 rs3948464 SP110 3431 2 230876220 NM_004509 NP_004500 C/T L425S minus 23280827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27653 rs3948464 SP110 3431 2 230876220 NM_004509 NP_004500 C/T L425S minus 23280827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27654 rs3948464 SP110 3431 2 230876220 NM_004509 NP_004500 C/T L425S minus 23280827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27655 rs3948464 SP110 3431 2 230876220 NM_004510 NP_004501 C/T L425S minus 23280827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27656 rs3948464 SP110 3431 2 230876220 NM_004510 NP_004501 C/T L425S minus 23280827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27657 rs3948464 SP110 3431 2 230876220 NM_004510 NP_004501 C/T L425S minus 23280827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27658 rs3948464 SP110 3431 2 230876220 NM_080424 NP_536349 C/T L425S minus 23280827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27659 rs3948464 SP110 3431 2 230876220 NM_080424 NP_536349 C/T L425S minus 23280827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27660 rs3948464 SP110 3431 2 230876220 NM_080424 NP_536349 C/T L425S minus 23280827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q37.1 SP110 nuclear body protein 27661 rs3950176 EMID1 129080 22 27954891 NM_133455 NP_597712 A/G R356Q plus 23588423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 22q12.2 EMI domain containing 1 27662 rs3950176 EMID1 129080 22 27954891 NM_133455 NP_597712 A/G R356Q plus 23588423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 22q12.2 EMI domain containing 1 27663 rs3950176 EMID1 129080 22 27954891 NM_133455 NP_597712 A/G R356Q plus 23588423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.14 123 "by doubleHit,freq,cluster" 22q12.2 EMI domain containing 1 27664 rs3953584 STEAP 26872 7 89434928 NM_012449 NP_036581 A/G I81M plus 5242399 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 108 HapMap 7q21 six transmembrane epithelial antigen of the prostate 27665 rs3959569 MAPKBP1 23005 15 39903039 XM_031706 XP_031706 C/G R1240P plus 5252876 1303 SEQUENOM CEPH CEPH (92) 92 0.3 108 by freq 15q14 likely ortholog of mouse mitogen activated protein kinase binding proten 1 27666 rs3969860 RAB3D 9545 19 11308886 NM_004283 NP_004274 C/T V64I plus 23638766 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19p13.2 "RAB3D, member RAS oncogene family" 27667 rs3969860 RAB3D 9545 19 11308886 NM_004283 NP_004274 C/T V64I plus 23638766 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 19p13.2 "RAB3D, member RAS oncogene family" 27668 rs3969860 RAB3D 9545 19 11308886 NM_004283 NP_004274 C/T V64I plus 23638766 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.2 "RAB3D, member RAS oncogene family" 27669 rs4012065 RANBP2 5903 2 108826951 NM_006267 NP_006258 A/G E580K plus 24819281 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 2q12.3 RAN binding protein 2 27670 rs4013197 CARM1L 256280 9 2911825 XM_171224 XP_171224 A/G A323V plus 5348302 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 111 "HapMap,doubleHit,freq" 9p24.2 coactivator associated arginine methyltransferase 1-like 27671 rs4015375 STEAP 26872 7 89434826 NM_012449 NP_036581 C/G H47Q plus 5352001 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 121 "HapMap,freq" 7q21 six transmembrane epithelial antigen of the prostate 27672 rs4027402 SYNE2 23224 14 63566502 NM_015180 NP_055995 C/T A2283V plus 5374587 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 27673 rs4044210 CELSR1 9620 22 45106834 NM_014246 NP_055061 C/T I2107V plus 8306967 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 27674 rs4044210 CELSR1 9620 22 45106834 NM_014246 NP_055061 C/T I2107V plus 23613987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 27675 rs4044210 CELSR1 9620 22 45106834 NM_014246 NP_055061 C/T I2107V plus 23613987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 27676 rs4044210 CELSR1 9620 22 45106834 NM_014246 NP_055061 C/T I2107V plus 23613987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 27677 rs4057749 OR8B4 283162 11 123799446 XM_210186 XP_210186 A/G C178R plus 23590481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27678 rs4057749 OR8B4 283162 11 123799446 XM_210186 XP_210186 A/G C178R plus 23590481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27679 rs4057749 OR8B4 283162 11 123799446 XM_210186 XP_210186 A/G C178R plus 23590481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27680 rs4057750 OR8B4 283162 11 123799587 XM_210186 XP_210186 A/G Y131H plus 23590489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27681 rs4057750 OR8B4 283162 11 123799587 XM_210186 XP_210186 A/G Y131H plus 23590489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27682 rs4057750 OR8B4 283162 11 123799587 XM_210186 XP_210186 A/G Y131H plus 23590489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily B, member 4" 27683 rs4066676 DKFZp434P0216 256158 9 130270636 XM_175125 XP_175125 C/T H370R minus 23586941 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by cluster,freq" 9q34.2 hemicentin-2 27684 rs4066676 DKFZp434P0216 256158 9 130270636 XM_175125 XP_175125 C/T H370R minus 23586941 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by cluster,freq" 9q34.2 hemicentin-2 27685 rs4066676 DKFZp434P0216 256158 9 130270636 XM_175125 XP_175125 C/T H370R minus 23586941 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 9q34.2 hemicentin-2 27686 rs4072111 IL16 3603 15 79365194 NM_172217 NP_757366 A/G P434S minus 5451276 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 120 "HapMap,doubleHit,freq,cluster" 15q26.3 interleukin 16 (lymphocyte chemoattractant factor) 27687 rs4072796 M160 283316 12 7440263 NM_174941 NP_777601 C/G G582A plus 23412044 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27688 rs4072796 M160 283316 12 7440263 NM_174941 NP_777601 C/G G582A plus 23412044 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27689 rs4072796 M160 283316 12 7440263 NM_174941 NP_777601 C/G G582A plus 23412044 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27690 rs4072797 M160 283316 12 7440276 NM_174941 NP_777601 C/T D578N plus 23412060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27691 rs4072797 M160 283316 12 7440276 NM_174941 NP_777601 C/T D578N plus 23412060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27692 rs4072797 M160 283316 12 7440276 NM_174941 NP_777601 C/T D578N plus 23412060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 12p13.31 scavenger receptor cysteine-rich type 1 protein M160 27693 rs4074536 CASQ2 845 1 116023009 NM_001232 NP_001223 C/T T66A plus 16338494 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.4 120 "by doubleHit,freq,cluster" 1p13.3-p11 calsequestrin 2 (cardiac muscle) 27694 rs4075254 AKAP13 11214 15 83924992 NM_006738 NP_006729 C/T V897M minus 23338064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27695 rs4075254 AKAP13 11214 15 83924992 NM_006738 NP_006729 C/T V897M minus 23338064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27696 rs4075254 AKAP13 11214 15 83924992 NM_006738 NP_006729 C/T V897M minus 23338064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27697 rs4075254 AKAP13 11214 15 83924992 NM_007200 NP_009131 C/T V897M minus 23338064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27698 rs4075254 AKAP13 11214 15 83924992 NM_007200 NP_009131 C/T V897M minus 23338064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27699 rs4075254 AKAP13 11214 15 83924992 NM_007200 NP_009131 C/T V897M minus 23338064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 27700 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 5456201 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27701 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 5456201 902 AFFY Caucasian 24 0.21 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27702 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 5456201 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27703 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 5456201 904 AFFY CEPH 12 0.08 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27704 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 5456201 905 AFFY PDpanel 46 0.26 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27705 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 24169194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27706 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 24169194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27707 rs4076700 FBXW8 26259 12 115846040 NM_012174 NP_036306 C/T R126Q minus 24169194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27708 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 5456201 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27709 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 5456201 902 AFFY Caucasian 24 0.21 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27710 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 5456201 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27711 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 5456201 904 AFFY CEPH 12 0.08 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27712 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 5456201 905 AFFY PDpanel 46 0.26 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27713 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 24169194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27714 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 24169194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27715 rs4076700 FBXW8 26259 12 115846040 NM_153348 NP_699179 C/T R192Q minus 24169194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 12q24.23 F-box and WD-40 domain protein 8 27716 rs4077812 SUSD3 203328 9 92919811 NM_145006 NP_659443 C/T K136E minus 5457513 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,freq,cluster" 9q22.32 sushi domain containing 3 27717 rs4077812 SUSD3 203328 9 92919811 NM_145006 NP_659443 C/T K136E minus 23462306 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 9q22.32 sushi domain containing 3 27718 rs4077812 SUSD3 203328 9 92919811 NM_145006 NP_659443 C/T K136E minus 23462306 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.47 123 "HapMap,doubleHit,freq,cluster" 9q22.32 sushi domain containing 3 27719 rs4077812 SUSD3 203328 9 92919811 NM_145006 NP_659443 C/T K136E minus 23462306 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 9q22.32 sushi domain containing 3 27720 rs4082155 HYPB 29072 3 47100389 NM_012271 NP_036403 A/G P1459L plus 23839404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27721 rs4082155 HYPB 29072 3 47100389 NM_012271 NP_036403 A/G P1459L plus 23839404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27722 rs4082155 HYPB 29072 3 47100389 NM_012271 NP_036403 A/G P1459L plus 23839404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27723 rs4082155 HYPB 29072 3 47100389 NM_014159 NP_054878 A/G P1459L plus 23839404 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27724 rs4082155 HYPB 29072 3 47100389 NM_014159 NP_054878 A/G P1459L plus 23839404 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27725 rs4082155 HYPB 29072 3 47100389 NM_014159 NP_054878 A/G P1459L plus 23839404 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.45 123 "by doubleHit,freq,cluster" 3p21.31 huntingtin interacting protein B 27726 rs4117966 OR13C5 138799 9 104440684 XM_071093 XP_071093 A/G C189Y minus 5554017 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,doubleHit,freq,cluster" 9q31.3 "olfactory receptor, family 13, subfamily C, member 5" 27727 rs4129843 USH2A 7399 1 212375617 NM_206933 NP_996816 A/G N3199D minus 23864897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 27728 rs4129843 USH2A 7399 1 212375617 NM_206933 NP_996816 A/G N3199D minus 23864897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 27729 rs4129843 USH2A 7399 1 212375617 NM_206933 NP_996816 A/G N3199D minus 23864897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 27730 rs4130426 SOX5 6660 12 23940220 NM_006940 NP_008871 A/G S15F plus 5579531 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 111 HapMap 12p12.1 SRY (sex determining region Y)-box 5 27731 rs4130426 SOX5 6660 12 23940220 NM_152989 NP_694534 A/G S2F plus 5579531 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 111 HapMap 12p12.1 SRY (sex determining region Y)-box 5 27732 rs4131311 COX5A 9377 15 73006160 NM_004255 NP_004246 G/T K113N minus 5580501 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 HapMap 15q25 cytochrome c oxidase subunit Va 27733 rs4134982 E2F3 1871 6 20598407 NM_001949 NP_001940 A/G D389N plus 5587215 693 EGP_SNPS PDR90 NIHPDR 168 0.01 108 by freq 6p22 E2F transcription factor 3 27734 rs4135012 CDC6 990 17 35703774 NM_001254 NP_001245 A/G D295N plus 5587248 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 by freq 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27735 rs4135012 CDC6 990 17 35703774 NM_001254 NP_001245 A/G D295N plus 24579095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27736 rs4135012 CDC6 990 17 35703774 NM_001254 NP_001245 A/G D295N plus 24579095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27737 rs4135012 CDC6 990 17 35703774 NM_001254 NP_001245 A/G D295N plus 24579095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27738 rs4135016 CDC6 990 17 35705183 NM_001254 NP_001245 A/G R378H plus 5587252 693 EGP_SNPS PDR90 NIHPDR 168 0.01 108 HapMap 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27739 rs4135016 CDC6 990 17 35705183 NM_001254 NP_001245 A/G R378H plus 5587252 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 108 HapMap 17q21.3 CDC6 cell division cycle 6 homolog (S. cerevisiae) 27740 rs4135113 TDG 6996 12 102879160 NM_003211 NP_003202 A/G G199S plus 5587376 693 EGP_SNPS PDR90 NIHPDR 176 0.09 120 "HapMap,doubleHit,freq,cluster" 12q24.1 thymine-DNA glycosylase 27741 rs4135113 TDG 6996 12 102879160 NM_003211 NP_003202 A/G G199S plus 5587376 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,doubleHit,freq,cluster" 12q24.1 thymine-DNA glycosylase 27742 rs4135113 TDG 6996 12 102879160 NM_003211 NP_003202 A/G G199S plus 19937945 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "HapMap,doubleHit,freq,cluster" 12q24.1 thymine-DNA glycosylase 27743 rs4140446 MDN1 23195 6 90504813 NM_014611 NP_055426 C/T S1559N plus 24422483 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 27744 rs4140446 MDN1 23195 6 90504813 NM_014611 NP_055426 C/T S1559N plus 24422483 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 27745 rs4140446 MDN1 23195 6 90504813 NM_014611 NP_055426 C/T S1559N plus 24422483 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 27746 rs4144164 COQ3 51805 6 99924322 NM_017421 NP_059117 A/G Y329H plus 23382985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 6q16.3 "coenzyme Q3 homolog, methyltransferase (yeast)" 27747 rs4144164 COQ3 51805 6 99924322 NM_017421 NP_059117 A/G Y329H plus 23382985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 6q16.3 "coenzyme Q3 homolog, methyltransferase (yeast)" 27748 rs4144164 COQ3 51805 6 99924322 NM_017421 NP_059117 A/G Y329H plus 23382985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q16.3 "coenzyme Q3 homolog, methyltransferase (yeast)" 27749 rs4144691 ADAMTSL3 57188 15 82330623 NM_207517 NP_997400 C/G L290V minus 24073732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 15q25.2 ADAMTS-like 3 27750 rs4144691 ADAMTSL3 57188 15 82330623 NM_207517 NP_997400 C/G L290V minus 24073732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 "by cluster,freq" 15q25.2 ADAMTS-like 3 27751 rs4144691 ADAMTSL3 57188 15 82330623 NM_207517 NP_997400 C/G L290V minus 24073732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.45 123 "by cluster,freq" 15q25.2 ADAMTS-like 3 27752 rs4144738 MLZE 56169 8 130830032 NM_031415 NP_113603 A/G M475T plus 6525061 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq,cluster" 8q24.1-q24.2 "melanoma-derived leucine zipper, extra-nuclear factor" 27753 rs4145748 ITGA1 3672 5 52237479 NM_181501 NP_852478 C/T T480M plus 23982813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 27754 rs4145748 ITGA1 3672 5 52237479 NM_181501 NP_852478 C/T T480M plus 23982813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 27755 rs4145748 ITGA1 3672 5 52237479 NM_181501 NP_852478 C/T T480M plus 23982813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 27756 rs4145944 ATP10D 57205 4 47434211 NM_020453 NP_065186 C/G S1389T minus 23727027 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 27757 rs4145944 ATP10D 57205 4 47434211 NM_020453 NP_065186 C/G S1389T minus 23727027 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 27758 rs4145944 ATP10D 57205 4 47434211 NM_020453 NP_065186 C/G S1389T minus 23727027 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 4p12 "ATPase, Class V, type 10D" 27759 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 16336535 901 AFFY AfAm 12 0.42 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27760 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 16336535 902 AFFY Caucasian 12 0.5 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27761 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 16336535 903 AFFY Asian 12 0.17 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27762 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 16336535 904 AFFY CEPH 6 0.5 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27763 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 16336535 905 AFFY PDpanel 48 0.48 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27764 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 23561603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27765 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 23561603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27766 rs4146960 RASEF 158158 9 82856962 NM_152573 NP_689786 A/G R262C plus 23561603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 9q21.33 RAS and EF hand domain containing 27767 rs4148211 ABCG8 64241 2 43983394 NM_022437 NP_071882 A/G Y54C plus 24650934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.43 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27768 rs4148211 ABCG8 64241 2 43983394 NM_022437 NP_071882 A/G Y54C plus 24650934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.34 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27769 rs4148211 ABCG8 64241 2 43983394 NM_022437 NP_071882 A/G Y54C plus 24650934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27770 rs4148217 ABCG8 64241 2 44011084 NM_022437 NP_071882 A/C T400K plus 19412608 1379 ZHYJIANG ZHYJIANG_pop1 118 0.14 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27771 rs4148217 ABCG8 64241 2 44011084 NM_022437 NP_071882 A/C T400K plus 23715877 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27772 rs4148217 ABCG8 64241 2 44011084 NM_022437 NP_071882 A/C T400K plus 23715877 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27773 rs4148217 ABCG8 64241 2 44011084 NM_022437 NP_071882 A/C T400K plus 23715877 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 27774 rs4148301 UGT2A1 10941 4 70642802 NM_006798 NP_006789 A/G G308R minus 14600403 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,doubleHit,freq,cluster" 4q13 "UDP glycosyltransferase 2 family, polypeptide A1" 27775 rs4148323 UGT1A1 54658 2 234451144 NM_000463 NP_000454 A/G G71R plus 5602103 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 110 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A1" 27776 rs4148880 TAP1 6890 6 32926752 NM_000593 NP_000584 A/G I393V minus 24169288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 27777 rs4148880 TAP1 6890 6 32926752 NM_000593 NP_000584 A/G I393V minus 24169288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 27778 rs4148880 TAP1 6890 6 32926752 NM_000593 NP_000584 A/G I393V minus 24169288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 27779 rs4148880 TAP1 6890 6 32926752 NM_000593 NP_000584 A/G I393V minus 24796294 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 27780 rs4148880 TAP1 6890 6 32926752 NM_000593 NP_000584 A/G I393V minus 24818952 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 "by doubleHit,freq,cluster" 6p21.3 "transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)" 27781 rs4149056 SLCO1B1 10599 12 21222816 NM_006446 NP_006437 C/T V174A plus 23994814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 12p "solute carrier organic anion transporter family, member 1B1" 27782 rs4149056 SLCO1B1 10599 12 21222816 NM_006446 NP_006437 C/T V174A plus 23994814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 12p "solute carrier organic anion transporter family, member 1B1" 27783 rs4149056 SLCO1B1 10599 12 21222816 NM_006446 NP_006437 C/T V174A plus 23994814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 12p "solute carrier organic anion transporter family, member 1B1" 27784 rs4149117 SLCO1B3 28234 12 20902747 NM_019844 NP_062818 G/T S112A plus 23348400 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 27785 rs4149117 SLCO1B3 28234 12 20902747 NM_019844 NP_062818 G/T S112A plus 23348400 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 27786 rs4149117 SLCO1B3 28234 12 20902747 NM_019844 NP_062818 G/T S112A plus 23348400 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 27787 rs4149313 ABCA1 19 9 104666308 NM_005502 NP_005493 A/G I883M minus 12674794 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.32 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 27788 rs4149313 ABCA1 19 9 104666308 NM_005502 NP_005493 A/G I883M minus 12674794 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 27789 rs4149313 ABCA1 19 9 104666308 NM_005502 NP_005493 A/G I883M minus 12674794 776 SNP500CANCER AFR1 African / African-American (24) 48 0.44 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 27790 rs4149313 ABCA1 19 9 104666308 NM_005502 NP_005493 A/G I883M minus 12674794 777 SNP500CANCER HISP1 Hispanic (23) 46 0.2 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 27791 rs4149313 ABCA1 19 9 104666308 NM_005502 NP_005493 A/G I883M minus 12674794 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.4 121 "by doubleHit,freq,cluster" 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 27792 rs4149584 TNFRSF1A 7132 12 6312904 NM_001065 NP_001056 A/G R121Q minus 5604300 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.02 110 "HapMap,freq" 12p13.2 "tumor necrosis factor receptor superfamily, member 1A" 27793 rs4149584 TNFRSF1A 7132 12 6312904 NM_001065 NP_001056 A/G R121Q minus 5604300 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 110 "HapMap,freq" 12p13.2 "tumor necrosis factor receptor superfamily, member 1A" 27794 rs4149584 TNFRSF1A 7132 12 6312904 NM_001065 NP_001056 A/G R121Q minus 5604300 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 110 "HapMap,freq" 12p13.2 "tumor necrosis factor receptor superfamily, member 1A" 27795 rs4149637 TNFRSF1A 7132 12 6313262 NM_001065 NP_001056 C/T P75L minus 5604431 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.14 110 "HapMap,freq" 12p13.2 "tumor necrosis factor receptor superfamily, member 1A" 27796 rs4149637 TNFRSF1A 7132 12 6313262 NM_001065 NP_001056 C/T P75L minus 5604431 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 110 "HapMap,freq" 12p13.2 "tumor necrosis factor receptor superfamily, member 1A" 27797 rs4149839 CDC42EP2 10435 11 64845472 NM_006779 NP_006770 A/G N176S plus 5604670 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 "by cluster,freq" 11q13 CDC42 effector protein (Rho GTPase binding) 2 27798 rs4149839 CDC42EP2 10435 11 64845472 NM_006779 NP_006770 A/G N176S plus 23560358 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 11q13 CDC42 effector protein (Rho GTPase binding) 2 27799 rs4149839 CDC42EP2 10435 11 64845472 NM_006779 NP_006770 A/G N176S plus 23560358 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 11q13 CDC42 effector protein (Rho GTPase binding) 2 27800 rs4149839 CDC42EP2 10435 11 64845472 NM_006779 NP_006770 A/G N176S plus 23560358 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 "by cluster,freq" 11q13 CDC42 effector protein (Rho GTPase binding) 2 27801 rs4149864 EXO1 9156 1 238341699 NM_003686 NP_003677 A/G V76I plus 5604702 693 EGP_SNPS PDR90 NIHPDR 180 0.01 110 by freq 1q42-q43 exonuclease 1 27802 rs4149864 EXO1 9156 1 238341699 NM_006027 NP_006018 A/G V76I plus 5604702 693 EGP_SNPS PDR90 NIHPDR 180 0.01 110 by freq 1q42-q43 exonuclease 1 27803 rs4149864 EXO1 9156 1 238341699 NM_130398 NP_569082 A/G V76I plus 5604702 693 EGP_SNPS PDR90 NIHPDR 180 0.01 110 by freq 1q42-q43 exonuclease 1 27804 rs4149909 EXO1 9156 1 238349939 NM_003686 NP_003677 A/G N279S plus 5604758 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 by freq 1q42-q43 exonuclease 1 27805 rs4149909 EXO1 9156 1 238349939 NM_003686 NP_003677 A/G N279S plus 24713753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 1q42-q43 exonuclease 1 27806 rs4149909 EXO1 9156 1 238349939 NM_003686 NP_003677 A/G N279S plus 24713753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q42-q43 exonuclease 1 27807 rs4149909 EXO1 9156 1 238349939 NM_003686 NP_003677 A/G N279S plus 24713753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27808 rs4149909 EXO1 9156 1 238349939 NM_006027 NP_006018 A/G N279S plus 5604758 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 by freq 1q42-q43 exonuclease 1 27809 rs4149909 EXO1 9156 1 238349939 NM_006027 NP_006018 A/G N279S plus 24713753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 1q42-q43 exonuclease 1 27810 rs4149909 EXO1 9156 1 238349939 NM_006027 NP_006018 A/G N279S plus 24713753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q42-q43 exonuclease 1 27811 rs4149909 EXO1 9156 1 238349939 NM_006027 NP_006018 A/G N279S plus 24713753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27812 rs4149909 EXO1 9156 1 238349939 NM_130398 NP_569082 A/G N279S plus 5604758 693 EGP_SNPS PDR90 NIHPDR 178 0.01 123 by freq 1q42-q43 exonuclease 1 27813 rs4149909 EXO1 9156 1 238349939 NM_130398 NP_569082 A/G N279S plus 24713753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 1q42-q43 exonuclease 1 27814 rs4149909 EXO1 9156 1 238349939 NM_130398 NP_569082 A/G N279S plus 24713753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q42-q43 exonuclease 1 27815 rs4149909 EXO1 9156 1 238349939 NM_130398 NP_569082 A/G N279S plus 24713753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27816 rs4149910 EXO1 9156 1 238349999 NM_003686 NP_003677 A/G N299S plus 5604759 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 1q42-q43 exonuclease 1 27817 rs4149910 EXO1 9156 1 238349999 NM_003686 NP_003677 A/G N299S plus 23804262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27818 rs4149910 EXO1 9156 1 238349999 NM_003686 NP_003677 A/G N299S plus 23804262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q42-q43 exonuclease 1 27819 rs4149910 EXO1 9156 1 238349999 NM_003686 NP_003677 A/G N299S plus 23804262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27820 rs4149910 EXO1 9156 1 238349999 NM_006027 NP_006018 A/G N299S plus 5604759 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 1q42-q43 exonuclease 1 27821 rs4149910 EXO1 9156 1 238349999 NM_006027 NP_006018 A/G N299S plus 23804262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27822 rs4149910 EXO1 9156 1 238349999 NM_006027 NP_006018 A/G N299S plus 23804262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q42-q43 exonuclease 1 27823 rs4149910 EXO1 9156 1 238349999 NM_006027 NP_006018 A/G N299S plus 23804262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27824 rs4149910 EXO1 9156 1 238349999 NM_130398 NP_569082 A/G N299S plus 5604759 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 1q42-q43 exonuclease 1 27825 rs4149910 EXO1 9156 1 238349999 NM_130398 NP_569082 A/G N299S plus 23804262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27826 rs4149910 EXO1 9156 1 238349999 NM_130398 NP_569082 A/G N299S plus 23804262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1q42-q43 exonuclease 1 27827 rs4149910 EXO1 9156 1 238349999 NM_130398 NP_569082 A/G N299S plus 23804262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q42-q43 exonuclease 1 27828 rs4149963 EXO1 9156 1 238361423 NM_003686 NP_003677 C/T T439M plus 5604825 693 EGP_SNPS PDR90 NIHPDR 180 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27829 rs4149963 EXO1 9156 1 238361423 NM_003686 NP_003677 C/T T439M plus 24155822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27830 rs4149963 EXO1 9156 1 238361423 NM_003686 NP_003677 C/T T439M plus 24155822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27831 rs4149963 EXO1 9156 1 238361423 NM_003686 NP_003677 C/T T439M plus 24155822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27832 rs4149963 EXO1 9156 1 238361423 NM_006027 NP_006018 C/T T439M plus 5604825 693 EGP_SNPS PDR90 NIHPDR 180 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27833 rs4149963 EXO1 9156 1 238361423 NM_006027 NP_006018 C/T T439M plus 24155822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27834 rs4149963 EXO1 9156 1 238361423 NM_006027 NP_006018 C/T T439M plus 24155822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27835 rs4149963 EXO1 9156 1 238361423 NM_006027 NP_006018 C/T T439M plus 24155822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27836 rs4149963 EXO1 9156 1 238361423 NM_130398 NP_569082 C/T T439M plus 5604825 693 EGP_SNPS PDR90 NIHPDR 180 0.13 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27837 rs4149963 EXO1 9156 1 238361423 NM_130398 NP_569082 C/T T439M plus 24155822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27838 rs4149963 EXO1 9156 1 238361423 NM_130398 NP_569082 C/T T439M plus 24155822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27839 rs4149963 EXO1 9156 1 238361423 NM_130398 NP_569082 C/T T439M plus 24155822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q42-q43 exonuclease 1 27840 rs4149965 EXO1 9156 1 238361479 NM_003686 NP_003677 A/G V458M plus 5604827 693 EGP_SNPS PDR90 NIHPDR 180 0.12 123 by freq 1q42-q43 exonuclease 1 27841 rs4149965 EXO1 9156 1 238361479 NM_003686 NP_003677 A/G V458M plus 24635520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 1q42-q43 exonuclease 1 27842 rs4149965 EXO1 9156 1 238361479 NM_003686 NP_003677 A/G V458M plus 24635520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q42-q43 exonuclease 1 27843 rs4149965 EXO1 9156 1 238361479 NM_003686 NP_003677 A/G V458M plus 24635520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27844 rs4149965 EXO1 9156 1 238361479 NM_006027 NP_006018 A/G V458M plus 5604827 693 EGP_SNPS PDR90 NIHPDR 180 0.12 123 by freq 1q42-q43 exonuclease 1 27845 rs4149965 EXO1 9156 1 238361479 NM_006027 NP_006018 A/G V458M plus 24635520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 1q42-q43 exonuclease 1 27846 rs4149965 EXO1 9156 1 238361479 NM_006027 NP_006018 A/G V458M plus 24635520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q42-q43 exonuclease 1 27847 rs4149965 EXO1 9156 1 238361479 NM_006027 NP_006018 A/G V458M plus 24635520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27848 rs4149965 EXO1 9156 1 238361479 NM_130398 NP_569082 A/G V458M plus 5604827 693 EGP_SNPS PDR90 NIHPDR 180 0.12 123 by freq 1q42-q43 exonuclease 1 27849 rs4149965 EXO1 9156 1 238361479 NM_130398 NP_569082 A/G V458M plus 24635520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 1q42-q43 exonuclease 1 27850 rs4149965 EXO1 9156 1 238361479 NM_130398 NP_569082 A/G V458M plus 24635520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q42-q43 exonuclease 1 27851 rs4149965 EXO1 9156 1 238361479 NM_130398 NP_569082 A/G V458M plus 24635520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42-q43 exonuclease 1 27852 rs4149966 EXO1 9156 1 238361485 NM_003686 NP_003677 C/G V460L plus 5604828 693 EGP_SNPS PDR90 NIHPDR 180 0.02 110 by freq 1q42-q43 exonuclease 1 27853 rs4149966 EXO1 9156 1 238361485 NM_006027 NP_006018 C/G V460L plus 5604828 693 EGP_SNPS PDR90 NIHPDR 180 0.02 110 by freq 1q42-q43 exonuclease 1 27854 rs4149966 EXO1 9156 1 238361485 NM_130398 NP_569082 C/G V460L plus 5604828 693 EGP_SNPS PDR90 NIHPDR 180 0.02 110 by freq 1q42-q43 exonuclease 1 27855 rs4150001 EXO1 9156 1 238374721 NM_003686 NP_003677 A/G G759E plus 5604878 693 EGP_SNPS PDR90 NIHPDR 176 0.01 110 by freq 1q42-q43 exonuclease 1 27856 rs4150001 EXO1 9156 1 238374721 NM_006027 NP_006018 A/G G759E plus 5604878 693 EGP_SNPS PDR90 NIHPDR 176 0.01 110 by freq 1q42-q43 exonuclease 1 27857 rs4150001 EXO1 9156 1 238374721 NM_130398 NP_569082 A/G G759E plus 5604878 693 EGP_SNPS PDR90 NIHPDR 176 0.01 110 by freq 1q42-q43 exonuclease 1 27858 rs4150050 CCNG2 901 4 78436874 NM_004354 NP_004345 G/T L4V plus 5604930 693 EGP_SNPS PDR90 NIHPDR 178 0.02 110 by freq 4q21.22 cyclin G2 27859 rs4150151 TAF1C 9013 16 82772517 NM_005679 NP_005670 C/T S387L minus 5605041 693 EGP_SNPS PDR90 NIHPDR 166 0.01 110 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27860 rs4150151 TAF1C 9013 16 82772517 NM_139353 NP_647610 C/T S294L minus 5605041 693 EGP_SNPS PDR90 NIHPDR 166 0.01 110 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27861 rs4150167 TAF1C 9013 16 82771185 NM_005679 NP_005670 A/G G523R minus 5605061 693 EGP_SNPS PDR90 NIHPDR 170 0.01 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27862 rs4150167 TAF1C 9013 16 82771185 NM_005679 NP_005670 A/G G523R minus 24498703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27863 rs4150167 TAF1C 9013 16 82771185 NM_005679 NP_005670 A/G G523R minus 24498703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27864 rs4150167 TAF1C 9013 16 82771185 NM_005679 NP_005670 A/G G523R minus 24498703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27865 rs4150167 TAF1C 9013 16 82771185 NM_139353 NP_647610 A/G G429R minus 5605061 693 EGP_SNPS PDR90 NIHPDR 170 0.01 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27866 rs4150167 TAF1C 9013 16 82771185 NM_139353 NP_647610 A/G G429R minus 24498703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27867 rs4150167 TAF1C 9013 16 82771185 NM_139353 NP_647610 A/G G429R minus 24498703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27868 rs4150167 TAF1C 9013 16 82771185 NM_139353 NP_647610 A/G G429R minus 24498703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27869 rs4150175 TAF1C 9013 16 82770286 NM_005679 NP_005670 C/T T791M minus 5605071 693 EGP_SNPS PDR90 NIHPDR 168 0.02 110 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27870 rs4150175 TAF1C 9013 16 82770286 NM_139353 NP_647610 C/T T697M minus 5605071 693 EGP_SNPS PDR90 NIHPDR 168 0.02 110 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27871 rs4150176 TAF1C 9013 16 82770211 NM_005679 NP_005670 A/G R816H minus 5605073 693 EGP_SNPS PDR90 NIHPDR 178 0.02 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27872 rs4150176 TAF1C 9013 16 82770211 NM_005679 NP_005670 A/G R816H minus 24498611 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27873 rs4150176 TAF1C 9013 16 82770211 NM_005679 NP_005670 A/G R816H minus 24498611 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27874 rs4150176 TAF1C 9013 16 82770211 NM_005679 NP_005670 A/G R816H minus 24498611 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27875 rs4150176 TAF1C 9013 16 82770211 NM_139353 NP_647610 A/G R722H minus 5605073 693 EGP_SNPS PDR90 NIHPDR 178 0.02 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27876 rs4150176 TAF1C 9013 16 82770211 NM_139353 NP_647610 A/G R722H minus 24498611 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27877 rs4150176 TAF1C 9013 16 82770211 NM_139353 NP_647610 A/G R722H minus 24498611 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27878 rs4150176 TAF1C 9013 16 82770211 NM_139353 NP_647610 A/G R722H minus 24498611 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q24 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 27879 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 5605243 693 EGP_SNPS PDR90 NIHPDR 180 0.02 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27880 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 12674955 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.01 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27881 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 12674955 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27882 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 12674955 776 SNP500CANCER AFR1 African / African-American (24) 46 0.04 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27883 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 12674955 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27884 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 12674955 778 SNP500CANCER PAC1 Pacific Rim (24) 42 1 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27885 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 23280142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27886 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 23280142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27887 rs4150313 ERCC5 2073 13 102311952 NM_000123 NP_000114 A/G Q256R plus 23280142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27888 rs4150342 ERCC5 2073 13 102318566 NM_000123 NP_000114 A/G N879S plus 5605277 693 EGP_SNPS PDR90 NIHPDR 168 0.01 110 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 27889 rs4150521 ERCC3 2071 2 127733208 NM_000122 NP_000113 C/T S704L minus 5605467 693 EGP_SNPS PDR90 NIHPDR 180 0.01 110 by freq 2q21 "excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing)" 27890 rs4151030 RAG1 5896 11 36552336 NM_000448 NP_000439 A/C D302E plus 5606001 693 EGP_SNPS PDR90 NIHPDR 166 0.04 123 "by cluster,freq" 11p13 recombination activating gene 1 27891 rs4151030 RAG1 5896 11 36552336 NM_000448 NP_000439 A/C D302E plus 23606967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p13 recombination activating gene 1 27892 rs4151030 RAG1 5896 11 36552336 NM_000448 NP_000439 A/C D302E plus 23606967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11p13 recombination activating gene 1 27893 rs4151030 RAG1 5896 11 36552336 NM_000448 NP_000439 A/C D302E plus 23606967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p13 recombination activating gene 1 27894 rs4151033 RAG1 5896 11 36554068 NM_000448 NP_000439 A/G E880K plus 5606005 693 EGP_SNPS PDR90 NIHPDR 174 0.02 110 by freq 11p13 recombination activating gene 1 27895 rs4151060 BTRC 8945 10 103288089 NM_003939 NP_003930 G/T A507S plus 5606035 792 ATELENTI Chris-pool-1 96 0.03 123 by freq 10q24.32 beta-transducin repeat containing 27896 rs4151060 BTRC 8945 10 103288089 NM_033637 NP_378663 G/T A543S plus 5606035 792 ATELENTI Chris-pool-1 96 0.03 123 by freq 10q24.32 beta-transducin repeat containing 27897 rs4151539 RB1 5925 13 47853459 NM_000321 NP_000312 C/G A525G plus 5606845 693 EGP_SNPS PDR90 NIHPDR 158 0.02 123 by freq 13q14.2 retinoblastoma 1 (including osteosarcoma) 27898 rs4151539 RB1 5925 13 47853459 NM_000321 NP_000312 C/G A525G plus 23429677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q14.2 retinoblastoma 1 (including osteosarcoma) 27899 rs4151539 RB1 5925 13 47853459 NM_000321 NP_000312 C/G A525G plus 23429677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 13q14.2 retinoblastoma 1 (including osteosarcoma) 27900 rs4151539 RB1 5925 13 47853459 NM_000321 NP_000312 C/G A525G plus 23429677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q14.2 retinoblastoma 1 (including osteosarcoma) 27901 rs4151553 P2RY5 10161 13 47884150 NM_005767 NP_005758 C/G C137W plus 5606861 693 EGP_SNPS PDR90 NIHPDR 170 0.06 110 by freq 13q14 "purinergic receptor P2Y, G-protein coupled, 5" 27902 rs4151648 C2 717 6 32021054 NM_000063 NP_000054 C/T R734C plus 5606984 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 119 "HapMap,freq,cluster" 6p21.3 complement component 2 27903 rs4151648 C2 717 6 32021054 NM_000063 NP_000054 C/T R734C plus 5606984 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,freq,cluster" 6p21.3 complement component 2 27904 rs4151648 C2 717 6 32021054 NM_000063 NP_000054 C/T R734C plus 12674481 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.07 119 "HapMap,freq,cluster" 6p21.3 complement component 2 27905 rs4151651 BF 629 6 32023593 NM_001710 NP_001701 A/G G252S plus 5606989 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 110 by freq 6p21.3 "B-factor, properdin" 27906 rs4151651 BF 629 6 32023593 NM_001710 NP_001701 A/G G252S plus 5606989 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 110 by freq 6p21.3 "B-factor, properdin" 27907 rs4151667 BF 629 6 32022003 NM_001710 NP_001701 A/T L9H plus 5607016 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 28 0.07 119 "by cluster,freq" 6p21.3 "B-factor, properdin" 27908 rs4151667 BF 629 6 32022003 NM_001710 NP_001701 A/T L9H plus 12674498 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 119 "by cluster,freq" 6p21.3 "B-factor, properdin" 27909 rs4233367 ADAMTS4 9507 1 157976110 NM_005099 NP_005090 C/T Q626R plus 7868081 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,doubleHit,freq,cluster" 1q21-q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 4" 27910 rs4233507 CYP4A11 1579 1 47110516 NM_000778 NP_000769 A/G F434S plus 12675763 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.35 121 "by doubleHit,freq,cluster" 1p33 "cytochrome P450, family 4, subfamily A, polypeptide 11" 27911 rs4233507 CYP4A11 1579 1 47110516 NM_000778 NP_000769 A/G F434S plus 12675763 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 121 "by doubleHit,freq,cluster" 1p33 "cytochrome P450, family 4, subfamily A, polypeptide 11" 27912 rs4236480 TRPV5 56302 7 142143386 NM_019841 NP_062815 A/G R154H minus 5608314 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.44 120 "by doubleHit,freq,cluster" 7q35 "transient receptor potential cation channel, subfamily V, member 5" 27913 rs4236480 TRPV5 56302 7 142143386 NM_019841 NP_062815 A/G R154H minus 5608314 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.28 120 "by doubleHit,freq,cluster" 7q35 "transient receptor potential cation channel, subfamily V, member 5" 27914 rs4237768 OR52L1 338751 11 5963848 XM_291977 XP_291977 A/G W450R plus 24717442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 27915 rs4237768 OR52L1 338751 11 5963848 XM_291977 XP_291977 A/G W450R plus 24717442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 27916 rs4237768 OR52L1 338751 11 5963848 XM_291977 XP_291977 A/G W450R plus 24717442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 27917 rs4238001 SCARB1 949 12 123873143 NM_005505 NP_005496 C/T G2S plus 14660124 1073 ELEVY MQFCEPOP_DS49 French Canadian Caucasians and European Caucasians 36 0.08 120 "by doubleHit,freq" 12q24.31 "scavenger receptor class B, member 1" 27918 rs4238001 SCARB1 949 12 123873143 NM_005505 NP_005496 C/T G2S plus 14660124 1074 ELEVY AAPOP_DS49 African-American 36 0.06 120 "by doubleHit,freq" 12q24.31 "scavenger receptor class B, member 1" 27919 rs4238001 SCARB1 949 12 123873143 NM_005505 NP_005496 C/T G2S plus 14660124 1075 ELEVY ASHJSEPBMPOP_DS49 "Middle Easteners and North Africans from Lebanon, Egypt or Algeria, Jewish Ashkenazims and Jewish Sepharadims" 46 0.13 120 "by doubleHit,freq" 12q24.31 "scavenger receptor class B, member 1" 27920 rs4238001 SCARB1 949 12 123873143 NM_005505 NP_005496 C/T G2S plus 14660124 1076 ELEVY SEPOP_DS49 "South East Asians (Laos, Vietnam) and East Asians (China and Korea)" 18 1 120 "by doubleHit,freq" 12q24.31 "scavenger receptor class B, member 1" 27921 rs4238001 SCARB1 949 12 123873143 NM_005505 NP_005496 C/T G2S plus 14660124 1077 ELEVY NADOJIBSAPOP_DS49 Amerindians from North & South America from Coriell Institute 42 0.07 120 "by doubleHit,freq" 12q24.31 "scavenger receptor class B, member 1" 27922 rs4239634 UNC13A 23025 19 17607947 XM_038604 XP_038604 A/G L1021P plus 7906982 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 19p13.12 unc-13 homolog A (C. elegans) 27923 rs4241344 ARHGAP25 9938 2 68961590 XM_376060 XP_376060 G/T R549S plus 7917785 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.23 120 "HapMap,doubleHit,freq,cluster" 2p13.3 Rho GTPase activating protein 25 27924 rs4242182 MSX2 4488 5 174088774 NM_002449 NP_002440 C/T M129T plus 6313877 835 SBOYD Craniosynostosis 40 0.1 121 "by doubleHit,freq,cluster" 5q34-q35 msh homeo box homolog 2 (Drosophila) 27925 rs4245191 NOD9 79671 11 118558036 NM_024618 NP_078894 A/C A793E plus 7966582 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27926 rs4245191 NOD9 79671 11 118558036 NM_024618 NP_078894 A/C A793E plus 24569138 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27927 rs4245191 NOD9 79671 11 118558036 NM_024618 NP_078894 A/C A793E plus 24569138 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27928 rs4245191 NOD9 79671 11 118558036 NM_024618 NP_078894 A/C A793E plus 24569138 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27929 rs4245191 NOD9 79671 11 118558036 NM_170722 NP_733840 A/C A793E plus 7966582 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27930 rs4245191 NOD9 79671 11 118558036 NM_170722 NP_733840 A/C A793E plus 24569138 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27931 rs4245191 NOD9 79671 11 118558036 NM_170722 NP_733840 A/C A793E plus 24569138 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27932 rs4245191 NOD9 79671 11 118558036 NM_170722 NP_733840 A/C A793E plus 24569138 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 11q23.3 NOD9 protein 27933 rs4245219 OR10Q1 219960 11 57752888 XM_166918 XP_166918 C/G E12D plus 23592465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 10, subfamily Q, member 1" 27934 rs4245219 OR10Q1 219960 11 57752888 XM_166918 XP_166918 C/G E12D plus 23592465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 10, subfamily Q, member 1" 27935 rs4245219 OR10Q1 219960 11 57752888 XM_166918 XP_166918 C/G E12D plus 23592465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 10, subfamily Q, member 1" 27936 rs4247303 TGOLN2 10618 2 85465738 NM_006464 NP_006455 A/G R259W plus 24630053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 2p11.2 trans-golgi network protein 2 27937 rs4247303 TGOLN2 10618 2 85465738 NM_006464 NP_006455 A/G R259W plus 24630053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,freq,cluster" 2p11.2 trans-golgi network protein 2 27938 rs4247303 TGOLN2 10618 2 85465738 NM_006464 NP_006455 A/G R259W plus 24630053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 2p11.2 trans-golgi network protein 2 27939 rs4251545 IRAK4 51135 12 42466562 NM_016123 NP_057207 A/G A428T plus 5607207 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.31 123 "by doubleHit,freq,cluster" 12q12 interleukin-1 receptor-associated kinase 4 27940 rs4251545 IRAK4 51135 12 42466562 NM_016123 NP_057207 A/G A428T plus 5607207 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.1 123 "by doubleHit,freq,cluster" 12q12 interleukin-1 receptor-associated kinase 4 27941 rs4251545 IRAK4 51135 12 42466562 NM_016123 NP_057207 A/G A428T plus 23465789 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 12q12 interleukin-1 receptor-associated kinase 4 27942 rs4251545 IRAK4 51135 12 42466562 NM_016123 NP_057207 A/G A428T plus 23465789 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q12 interleukin-1 receptor-associated kinase 4 27943 rs4251545 IRAK4 51135 12 42466562 NM_016123 NP_057207 A/G A428T plus 23465789 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 12q12 interleukin-1 receptor-associated kinase 4 27944 rs4251921 PLAUR 5329 19 48845047 NM_002659 NP_002650 A/C N281K minus 5607653 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 by freq 19q13 "plasminogen activator, urokinase receptor" 27945 rs4251921 PLAUR 5329 19 48845047 NM_002659 NP_002650 A/C N281K minus 23608903 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13 "plasminogen activator, urokinase receptor" 27946 rs4251921 PLAUR 5329 19 48845047 NM_002659 NP_002650 A/C N281K minus 23608903 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19q13 "plasminogen activator, urokinase receptor" 27947 rs4251921 PLAUR 5329 19 48845047 NM_002659 NP_002650 A/C N281K minus 23608903 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13 "plasminogen activator, urokinase receptor" 27948 rs4252125 PLG 5340 6 161122651 NM_000301 NP_000292 A/G D472N plus 5607943 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.19 123 "by doubleHit,freq,cluster" 6q26 plasminogen 27949 rs4252125 PLG 5340 6 161122651 NM_000301 NP_000292 A/G D472N plus 5607943 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.26 123 "by doubleHit,freq,cluster" 6q26 plasminogen 27950 rs4252125 PLG 5340 6 161122651 NM_000301 NP_000292 A/G D472N plus 24471664 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6q26 plasminogen 27951 rs4252125 PLG 5340 6 161122651 NM_000301 NP_000292 A/G D472N plus 24471664 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 6q26 plasminogen 27952 rs4252125 PLG 5340 6 161122651 NM_000301 NP_000292 A/G D472N plus 24471664 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q26 plasminogen 27953 rs4252128 PLG 5340 6 161123230 NM_000301 NP_000292 C/T A494V plus 5607947 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 "by cluster,freq" 6q26 plasminogen 27954 rs4252128 PLG 5340 6 161123230 NM_000301 NP_000292 C/T A494V plus 23469407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q26 plasminogen 27955 rs4252128 PLG 5340 6 161123230 NM_000301 NP_000292 C/T A494V plus 23469407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 6q26 plasminogen 27956 rs4252128 PLG 5340 6 161123230 NM_000301 NP_000292 C/T A494V plus 23469407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q26 plasminogen 27957 rs4252233 TAF9 6880 5 68697304 NM_003187 NP_003178 C/T T6M minus 5608071 693 EGP_SNPS PDR90 NIHPDR 174 0.01 111 "HapMap,freq" 5q11.2-q13.1 "TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa" 27958 rs4252233 TAF9 6880 5 68697304 NM_003187 NP_003178 C/T T6M minus 5608071 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 111 "HapMap,freq" 5q11.2-q13.1 "TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa" 27959 rs4252272 IL10RA 3587 11 117369273 NM_001558 NP_001549 A/G S159G plus 5608113 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 27960 rs4252272 IL10RA 3587 11 117369273 NM_001558 NP_001549 A/G S159G plus 5608113 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.28 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 27961 rs4252272 IL10RA 3587 11 117369273 NM_001558 NP_001549 A/G S159G plus 24565466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 27962 rs4252272 IL10RA 3587 11 117369273 NM_001558 NP_001549 A/G S159G plus 24565466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 27963 rs4252272 IL10RA 3587 11 117369273 NM_001558 NP_001549 A/G S159G plus 24565466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q23 "interleukin 10 receptor, alpha" 27964 rs4252303 IL10RA 3587 11 117365515 NM_001558 NP_001549 A/G V113I plus 5608153 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 111 by freq 11q23 "interleukin 10 receptor, alpha" 27965 rs4252315 TGFB3 7043 14 75516811 NM_003239 NP_003230 C/T T60M minus 5608167 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 34 0.03 120 "by cluster,freq" 14q24 "transforming growth factor, beta 3" 27966 rs4252315 TGFB3 7043 14 75516811 NM_003239 NP_003230 C/T T60M minus 15356680 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.02 120 "by cluster,freq" 14q24 "transforming growth factor, beta 3" 27967 rs4252315 TGFB3 7043 14 75516811 NM_003239 NP_003230 C/T T60M minus 15356680 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 14q24 "transforming growth factor, beta 3" 27968 rs4252315 TGFB3 7043 14 75516811 NM_003239 NP_003230 C/T T60M minus 15356680 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 14q24 "transforming growth factor, beta 3" 27969 rs4252372 TRPV5 56302 7 142147371 NM_019841 NP_062815 C/T A8V minus 5608277 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.12 111 by freq 7q35 "transient receptor potential cation channel, subfamily V, member 5" 27970 rs4252499 TRPV5 56302 7 142126586 NM_019841 NP_062815 A/G A563T minus 5608413 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.17 116 "by cluster,freq" 7q35 "transient receptor potential cation channel, subfamily V, member 5" 27971 rs4252589 HSPB2 3316 11 111289611 NM_001541 NP_001532 A/G G111S plus 5608512 693 EGP_SNPS PDR90 NIHPDR 172 0.01 111 by freq 11q22-q23 heat shock 27kDa protein 2 27972 rs4252716 MDM4 4194 1 201243581 NM_002393 NP_002384 C/T I175T plus 5608655 693 EGP_SNPS PDR90 NIHPDR 174 0.04 123 "by cluster,freq" 1q32 "Mdm4, transformed 3T3 cell double minute 4, p53 binding protein (mouse)" 27973 rs4252716 MDM4 4194 1 201243581 NM_002393 NP_002384 C/T I175T plus 23699725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q32 "Mdm4, transformed 3T3 cell double minute 4, p53 binding protein (mouse)" 27974 rs4252716 MDM4 4194 1 201243581 NM_002393 NP_002384 C/T I175T plus 23699725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q32 "Mdm4, transformed 3T3 cell double minute 4, p53 binding protein (mouse)" 27975 rs4252716 MDM4 4194 1 201243581 NM_002393 NP_002384 C/T I175T plus 23699725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q32 "Mdm4, transformed 3T3 cell double minute 4, p53 binding protein (mouse)" 27976 rs4252903 CCNI 10983 4 78333553 NM_006835 NP_006826 A/G V207I minus 5608853 693 EGP_SNPS PDR90 NIHPDR 174 0.01 111 by freq 4q21.22 cyclin I 27977 rs4253047 ERCC6 2074 10 50402145 NM_000124 NP_000115 A/G G446D minus 5609014 693 EGP_SNPS PDR90 NIHPDR 166 0.01 111 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27978 rs4253072 PGBD3 267004 10 50394022 NM_170753 NP_736609 A/G R382K minus 5609043 693 EGP_SNPS PDR90 NIHPDR 180 0.01 121 "by doubleHit,cluster" 10q11 piggyBac transposable element derived 3 27979 rs4253199 ERCC6 2074 10 50350965 NM_000124 NP_000115 C/T T942M minus 5609179 693 EGP_SNPS PDR90 NIHPDR 180 0.02 111 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27980 rs4253211 ERCC6 2074 10 50348323 NM_000124 NP_000115 C/G R1230P minus 5609194 693 EGP_SNPS PDR90 NIHPDR 168 0.08 123 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27981 rs4253211 ERCC6 2074 10 50348323 NM_000124 NP_000115 C/G R1230P minus 24205469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27982 rs4253211 ERCC6 2074 10 50348323 NM_000124 NP_000115 C/G R1230P minus 24205469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27983 rs4253211 ERCC6 2074 10 50348323 NM_000124 NP_000115 C/G R1230P minus 24205469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27984 rs4253219 ERCC6 2074 10 50339422 NM_000124 NP_000115 G/T G1322V minus 5609203 693 EGP_SNPS PDR90 NIHPDR 178 0.01 111 by freq 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27985 rs4253230 ERCC6 2074 10 50337027 NM_000124 NP_000115 C/T T1441I minus 5609217 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27986 rs4253230 ERCC6 2074 10 50337027 NM_000124 NP_000115 C/T T1441I minus 23779916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27987 rs4253230 ERCC6 2074 10 50337027 NM_000124 NP_000115 C/T T1441I minus 23779916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27988 rs4253230 ERCC6 2074 10 50337027 NM_000124 NP_000115 C/T T1441I minus 23779916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q11 "excision repair cross-complementing rodent repair deficiency, complementation group 6" 27989 rs4253301 KLKB1 3818 4 187548161 NM_000892 NP_000883 G/T S381A plus 5609308 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.09 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27990 rs4253301 KLKB1 3818 4 187548161 NM_000892 NP_000883 G/T S381A plus 5609308 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27991 rs4253301 KLKB1 3818 4 187548161 NM_000892 NP_000883 G/T S381A plus 23275024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27992 rs4253301 KLKB1 3818 4 187548161 NM_000892 NP_000883 G/T S381A plus 23275024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27993 rs4253301 KLKB1 3818 4 187548161 NM_000892 NP_000883 G/T S381A plus 23275024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27994 rs4253325 KLKB1 3818 4 187553622 NM_000892 NP_000883 A/G R560Q plus 5609337 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.2 123 "by doubleHit,freq,cluster" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27995 rs4253325 KLKB1 3818 4 187553622 NM_000892 NP_000883 A/G R560Q plus 5609337 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 123 "by doubleHit,freq,cluster" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27996 rs4253325 KLKB1 3818 4 187553622 NM_000892 NP_000883 A/G R560Q plus 24179513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27997 rs4253325 KLKB1 3818 4 187553622 NM_000892 NP_000883 A/G R560Q plus 24179513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27998 rs4253325 KLKB1 3818 4 187553622 NM_000892 NP_000883 A/G R560Q plus 24179513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 27999 rs4253373 KLKB1 3818 4 187546553 NM_000892 NP_000883 A/C H202Q plus 5609388 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 by freq 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28000 rs4253373 KLKB1 3818 4 187546553 NM_000892 NP_000883 A/C H202Q plus 23274950 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28001 rs4253373 KLKB1 3818 4 187546553 NM_000892 NP_000883 A/C H202Q plus 23274950 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28002 rs4253373 KLKB1 3818 4 187546553 NM_000892 NP_000883 A/C H202Q plus 23274950 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28003 rs4253376 KLKB1 3818 4 187547569 NM_000892 NP_000883 C/G S269C plus 5609391 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28004 rs4253376 KLKB1 3818 4 187547569 NM_000892 NP_000883 C/G S269C plus 23275000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28005 rs4253376 KLKB1 3818 4 187547569 NM_000892 NP_000883 C/G S269C plus 23275000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28006 rs4253376 KLKB1 3818 4 187547569 NM_000892 NP_000883 C/G S269C plus 23275000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28007 rs4253377 KLKB1 3818 4 187547852 NM_000892 NP_000883 G/T F311V plus 5609392 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28008 rs4253377 KLKB1 3818 4 187547852 NM_000892 NP_000883 G/T F311V plus 23275011 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28009 rs4253377 KLKB1 3818 4 187547852 NM_000892 NP_000883 G/T F311V plus 23275011 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28010 rs4253377 KLKB1 3818 4 187547852 NM_000892 NP_000883 G/T F311V plus 23275011 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q34-q35 "kallikrein B, plasma (Fletcher factor) 1" 28011 rs4255378 EFNA1 1942 1 151919300 NM_004428 NP_004419 A/T D159V plus 7904338 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 1q21-q22 ephrin-A1 28012 rs4255378 EFNA1 1942 1 151919300 NM_182685 NP_872626 A/T D137V plus 7904338 1303 SEQUENOM CEPH CEPH (92) 92 0.49 121 "by doubleHit,freq,cluster" 1q21-q22 ephrin-A1 28013 rs4263028 CNDP1 84735 18 70379104 NM_032649 NP_116038 A/G I113V plus 7973885 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,cluster" 18q22.3 carnosine dipeptidase 1 (metallopeptidase M20 family) 28014 rs4263028 CNDP1 84735 18 70379104 NM_032649 NP_116038 A/G I113V plus 23530247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,cluster" 18q22.3 carnosine dipeptidase 1 (metallopeptidase M20 family) 28015 rs4263028 CNDP1 84735 18 70379104 NM_032649 NP_116038 A/G I113V plus 23530247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,cluster" 18q22.3 carnosine dipeptidase 1 (metallopeptidase M20 family) 28016 rs4263028 CNDP1 84735 18 70379104 NM_032649 NP_116038 A/G I113V plus 23530247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,cluster" 18q22.3 carnosine dipeptidase 1 (metallopeptidase M20 family) 28017 rs4280359 ZNF228 7771 19 49525691 NM_013380 NP_037512 C/G F153L plus 24685403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 19q13.2 zinc finger protein 228 28018 rs4280359 ZNF228 7771 19 49525691 NM_013380 NP_037512 C/G F153L plus 24685403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 19q13.2 zinc finger protein 228 28019 rs4280359 ZNF228 7771 19 49525691 NM_013380 NP_037512 C/G F153L plus 24685403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 19q13.2 zinc finger protein 228 28020 rs4301822 APOF 319 12 55041325 NM_001638 NP_001629 C/T I311T minus 16361197 693 EGP_SNPS PDR90 NIHPDR 178 0.13 120 "by cluster,freq" 12q13.13 apolipoprotein F 28021 rs4304840 CLECSF8 338339 12 8559164 NM_080387 NP_525126 A/G S32G plus 23414228 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 12p13.31 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8" 28022 rs4304840 CLECSF8 338339 12 8559164 NM_080387 NP_525126 A/G S32G plus 23414228 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 12p13.31 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8" 28023 rs4304840 CLECSF8 338339 12 8559164 NM_080387 NP_525126 A/G S32G plus 23414228 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 12p13.31 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8" 28024 rs4306647 NALP2 55655 19 60185969 NM_017852 NP_060322 A/G R364K plus 5708449 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 119 "HapMap,doubleHit,freq,cluster" 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 28025 rs4329068 PCDHGA4 56111 5 140716873 NM_018917 NP_061740 A/G R641K plus 5749909 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 111 "HapMap,freq" 5q31 "protocadherin gamma subfamily A, 4" 28026 rs4329068 PCDHGA4 56111 5 140716873 NM_032053 NP_114442 A/G R641K plus 5749909 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 111 "HapMap,freq" 5q31 "protocadherin gamma subfamily A, 4" 28027 rs4354673 OR52L1 338751 11 5964189 XM_291977 XP_291977 G/T K336T plus 23809912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28028 rs4354673 OR52L1 338751 11 5964189 XM_291977 XP_291977 G/T K336T plus 23809912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28029 rs4354673 OR52L1 338751 11 5964189 XM_291977 XP_291977 G/T K336T plus 23809912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28030 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 7987430 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.46 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28031 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 7987430 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.45 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28032 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 7987430 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 3 0.5 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28033 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 24694557 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28034 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 24694557 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28035 rs4358188 BPI 671 20 36380262 NM_001725 NP_001716 A/G E216K plus 24694557 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 28036 rs4359426 CCL22 6367 16 55950234 NM_002990 NP_002981 A/C D2A plus 14272094 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 121 "HapMap,doubleHit,freq,cluster" 16q13 chemokine (C-C motif) ligand 22 28037 rs4361282 FRMD4B 23150 3 69381923 XM_114303 XP_114303 C/G E399D plus 14184687 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 28038 rs4361282 FRMD4B 23150 3 69381923 XM_114303 XP_114303 C/G E399D plus 23295095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 28039 rs4361282 FRMD4B 23150 3 69381923 XM_114303 XP_114303 C/G E399D plus 23295095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "HapMap,doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 28040 rs4361282 FRMD4B 23150 3 69381923 XM_114303 XP_114303 C/G E399D plus 23295095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 3p14.2 GRP1-binding protein GRSP1 28041 rs4363527 GBF1 8729 10 104093807 NM_004193 NP_004184 A/G E58G plus 5813415 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 10q24 golgi-specific brefeldin A resistance factor 1 28042 rs4371716 CDH12 1010 5 22114341 NM_004061 NP_004052 C/T V68M plus 7930772 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 28043 rs4371716 CDH12 1010 5 22114341 NM_004061 NP_004052 C/T V68M plus 23164497 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 28044 rs4371716 CDH12 1010 5 22114341 NM_004061 NP_004052 C/T V68M plus 23164497 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 28045 rs4371716 CDH12 1010 5 22114341 NM_004061 NP_004052 C/T V68M plus 23164497 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 28046 rs4375699 OR1A1 8383 17 3066047 NM_014565 NP_055380 A/G R128H plus 23791827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 28047 rs4375699 OR1A1 8383 17 3066047 NM_014565 NP_055380 A/G R128H plus 23791827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 28048 rs4375699 OR1A1 8383 17 3066047 NM_014565 NP_055380 A/G R128H plus 23791827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 28049 rs4384572 STARD5 80765 15 79401866 NM_030574 NP_085051 C/T R57K plus 7977477 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 15q26 START domain containing 5 28050 rs4384572 STARD5 80765 15 79401866 NM_181900 NP_871629 C/T G74S plus 7977477 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 15q26 START domain containing 5 28051 rs4390302 ZNF11B 7558 10 42409853 NM_006955 NP_008886 C/T E184G plus 5862232 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 10q11.2 zinc finger protein 11b (KOX 2) 28052 rs4406360 UNQ9391 203074 8 10427862 NM_198464 NP_940866 C/T A212V plus 23971834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 8p23.1 tryptophan/serine protease 28053 rs4406360 UNQ9391 203074 8 10427862 NM_198464 NP_940866 C/T A212V plus 23971834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 8p23.1 tryptophan/serine protease 28054 rs4406360 UNQ9391 203074 8 10427862 NM_198464 NP_940866 C/T A212V plus 23971834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 8p23.1 tryptophan/serine protease 28055 rs4410209 EMR2 30817 19 14723458 NM_013447 NP_038475 A/G T605I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28056 rs4410209 EMR2 30817 19 14723458 NM_013447 NP_038475 A/G T605I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28057 rs4410209 EMR2 30817 19 14723458 NM_013447 NP_038475 A/G T605I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28058 rs4410209 EMR2 30817 19 14723458 NM_152916 NP_690880 A/G T556I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28059 rs4410209 EMR2 30817 19 14723458 NM_152916 NP_690880 A/G T556I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28060 rs4410209 EMR2 30817 19 14723458 NM_152916 NP_690880 A/G T556I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28061 rs4410209 EMR2 30817 19 14723458 NM_152917 NP_690881 A/G T512I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28062 rs4410209 EMR2 30817 19 14723458 NM_152917 NP_690881 A/G T512I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28063 rs4410209 EMR2 30817 19 14723458 NM_152917 NP_690881 A/G T512I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28064 rs4410209 EMR2 30817 19 14723458 NM_152918 NP_690882 A/G T463I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28065 rs4410209 EMR2 30817 19 14723458 NM_152918 NP_690882 A/G T463I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28066 rs4410209 EMR2 30817 19 14723458 NM_152918 NP_690882 A/G T463I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28067 rs4410209 EMR2 30817 19 14723458 NM_152919 NP_690883 A/G T594I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28068 rs4410209 EMR2 30817 19 14723458 NM_152919 NP_690883 A/G T594I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28069 rs4410209 EMR2 30817 19 14723458 NM_152919 NP_690883 A/G T594I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28070 rs4410209 EMR2 30817 19 14723458 NM_152920 NP_690884 A/G T545I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28071 rs4410209 EMR2 30817 19 14723458 NM_152920 NP_690884 A/G T545I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28072 rs4410209 EMR2 30817 19 14723458 NM_152920 NP_690884 A/G T545I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28073 rs4410209 EMR2 30817 19 14723458 NM_152921 NP_690885 A/G T501I plus 23404615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28074 rs4410209 EMR2 30817 19 14723458 NM_152921 NP_690885 A/G T501I plus 23404615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28075 rs4410209 EMR2 30817 19 14723458 NM_152921 NP_690885 A/G T501I plus 23404615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 2" 28076 rs4410254 DLX2 1746 2 172792421 NM_004405 NP_004396 G/T S118Y plus 5898302 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 2q32 distal-less homeo box 2 28077 rs4413373 HERC6 55008 4 89720782 XM_496710 XP_496710 C/T Q1096X plus 7976708 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,doubleHit" 4q22.1 hect domain and RLD 6 28078 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 14899148 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28079 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 14899148 902 AFFY Caucasian 22 0.18 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28080 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 14899148 903 AFFY Asian 12 0.33 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28081 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 14899148 904 AFFY CEPH 10 0.4 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28082 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 14899148 905 AFFY PDpanel 46 0.13 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28083 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 24027902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28084 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 24027902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28085 rs4419794 SLC7A13 157724 8 87298855 NM_138817 NP_620172 C/T R380K plus 24027902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 28086 rs4422842 CACNA1B 774 9 138053143 NM_000718 NP_000709 C/G N167K minus 7846120 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 9q34 "calcium channel, voltage-dependent, L type, alpha 1B subunit" 28087 rs4426527 AGXT 189 2 241537506 NM_000030 NP_000021 A/G I340M plus 7853995 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 2q36-q37 alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) 28088 rs4426527 AGXT 189 2 241537506 NM_000030 NP_000021 A/G I340M plus 24260964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 2q36-q37 alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) 28089 rs4426527 AGXT 189 2 241537506 NM_000030 NP_000021 A/G I340M plus 24260964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 2q36-q37 alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) 28090 rs4426527 AGXT 189 2 241537506 NM_000030 NP_000021 A/G I340M plus 24260964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 2q36-q37 alanine-glyoxylate aminotransferase (oxalosis I; hyperoxaluria I; glycolicaciduria; serine-pyruvate aminotransferase) 28091 rs4430553 HELB 92797 12 64985162 NM_033647 NP_387467 C/T L191P plus 24705888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 12q14.2 helicase (DNA) B 28092 rs4430553 HELB 92797 12 64985162 NM_033647 NP_387467 C/T L191P plus 24705888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 12q14.2 helicase (DNA) B 28093 rs4430553 HELB 92797 12 64985162 NM_033647 NP_387467 C/T L191P plus 24705888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 12q14.2 helicase (DNA) B 28094 rs4436524 OR52L1 338751 11 5964256 XM_291977 XP_291977 A/G C314R plus 24717443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28095 rs4436524 OR52L1 338751 11 5964256 XM_291977 XP_291977 A/G C314R plus 24717443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28096 rs4436524 OR52L1 338751 11 5964256 XM_291977 XP_291977 A/G C314R plus 24717443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily L, member 1" 28097 rs4438413 ZNF525 170958 19 58576224 XM_375646 XP_375646 A/G D140N plus 5949365 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq" 19q13.42 zinc finger protein 525 28098 rs4448319 NFKBIL2 4796 8 145636230 NM_013432 NP_038460 C/T V329M plus 23376042 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 28099 rs4448319 NFKBIL2 4796 8 145636230 NM_013432 NP_038460 C/T V329M plus 23376042 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 28100 rs4448319 NFKBIL2 4796 8 145636230 NM_013432 NP_038460 C/T V329M plus 23376042 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,cluster" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 28101 rs4452075 ZNF527 84503 19 42571429 XM_030378 XP_030378 A/G H213R plus 5973879 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.16 116 "HapMap,doubleHit,freq,cluster" 19q13.1 zinc finger protein 527 28102 rs4458268 SDC4 6385 20 43410405 NM_002999 NP_002990 A/G F12L plus 28459171 549 KYUGEN CP CEPH (78) 156 0.33 123 "by doubleHit,freq,cluster" 20q12 "syndecan 4 (amphiglycan, ryudocan)" 28103 rs4458268 SDC4 6385 20 43410405 NM_002999 NP_002990 A/G F12L plus 28459171 1335 KYUGEN JPK2 Japanese (100) 200 0.48 123 "by doubleHit,freq,cluster" 20q12 "syndecan 4 (amphiglycan, ryudocan)" 28104 rs4459610 ACE 1636 17 58938452 NM_152831 NP_690044 A/T K715N plus 5987275 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 121 "HapMap,doubleHit,freq,cluster" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 28105 rs4468625 MGRN1 23295 16 4642764 NM_015246 NP_056061 A/T D127E plus 6003320 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 16p13.3 "mahogunin, ring finger 1" 28106 rs4470839 KIFC1 3833 6 33485402 XM_371813 XP_371813 G/T V782G plus 6007260 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 6p21.3 kinesin family member C1 28107 rs4479447 ZFML 27332 2 71565863 NM_014497 NP_055312 C/G D1737H plus 6022683 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 HapMap 2p13.2-p13.1 NP220 nuclear protein 28108 rs4479748 ENPP6 133121 4 185387547 NM_153343 NP_699174 C/T S419G plus 24661524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 4q35.1 ectonucleotide pyrophosphatase/phosphodiesterase 6 28109 rs4479748 ENPP6 133121 4 185387547 NM_153343 NP_699174 C/T S419G plus 24661524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 4q35.1 ectonucleotide pyrophosphatase/phosphodiesterase 6 28110 rs4479748 ENPP6 133121 4 185387547 NM_153343 NP_699174 C/T S419G plus 24661524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 4q35.1 ectonucleotide pyrophosphatase/phosphodiesterase 6 28111 rs4482466 PPP3R1 5534 2 68327371 NM_000945 NP_000936 A/G L49S plus 6027976 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 HapMap 2p15 "protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, alpha isoform (calcineurin B, type I)" 28112 rs4483821 ADAMTSL3 57188 15 82279640 NM_207517 NP_997400 A/G H146R plus 7883748 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq,cluster" 15q25.2 ADAMTS-like 3 28113 rs4488638 CDKL4 344387 2 39385199 XM_293029 XP_293029 C/T I38V plus 23219693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 2p22.3 cyclin-dependent kinase-like 4 28114 rs4488638 CDKL4 344387 2 39385199 XM_293029 XP_293029 C/T I38V plus 23219693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 2p22.3 cyclin-dependent kinase-like 4 28115 rs4488638 CDKL4 344387 2 39385199 XM_293029 XP_293029 C/T I38V plus 23219693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 2p22.3 cyclin-dependent kinase-like 4 28116 rs4504745 ZNF79 7633 9 127276968 NM_007135 NP_009066 A/G R51G plus 24307274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 9q34 zinc finger protein 79 (pT7) 28117 rs4504745 ZNF79 7633 9 127276968 NM_007135 NP_009066 A/G R51G plus 24307274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 9q34 zinc finger protein 79 (pT7) 28118 rs4504745 ZNF79 7633 9 127276968 NM_007135 NP_009066 A/G R51G plus 24307274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.35 123 "by doubleHit,freq,cluster" 9q34 zinc finger protein 79 (pT7) 28119 rs4509014 PAIP2 51247 5 138728176 NM_016480 NP_057564 A/G E55K plus 6074754 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 HapMap 5q31.3 poly(A) binding protein interacting protein 2 28120 rs4509745 OVTN 341277 11 7669047 NM_198185 NP_937828 C/T W556X plus 10682371 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 11p15.4 oviductin protease 28121 rs4509745 OVTN 341277 11 7669047 NM_198185 NP_937828 C/T W556X plus 24717538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 "HapMap,doubleHit,freq,cluster" 11p15.4 oviductin protease 28122 rs4509745 OVTN 341277 11 7669047 NM_198185 NP_937828 C/T W556X plus 24717538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 11p15.4 oviductin protease 28123 rs4509745 OVTN 341277 11 7669047 NM_198185 NP_937828 C/T W556X plus 24717538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 11p15.4 oviductin protease 28124 rs4514875 CD8B1 926 2 86981089 NM_172099 NP_742097 C/T M230I plus 7978240 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 120 "HapMap,freq,cluster" 2p12 "CD8 antigen, beta polypeptide 1 (p37)" 28125 rs4528317 OVTN 341277 11 7673431 NM_198185 NP_937828 A/T N410Y plus 23810020 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 28126 rs4528317 OVTN 341277 11 7673431 NM_198185 NP_937828 A/T N410Y plus 23810020 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 28127 rs4528317 OVTN 341277 11 7673431 NM_198185 NP_937828 A/T N410Y plus 23810020 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 28128 rs4548513 CTNNA3 29119 10 67710331 NM_013266 NP_037398 C/T S596N plus 7889057 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "catenin (cadherin-associated protein), alpha 3" 28129 rs4548513 CTNNA3 29119 10 67710331 NM_013266 NP_037398 C/T S596N plus 23964243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "catenin (cadherin-associated protein), alpha 3" 28130 rs4548513 CTNNA3 29119 10 67710331 NM_013266 NP_037398 C/T S596N plus 23964243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "catenin (cadherin-associated protein), alpha 3" 28131 rs4548513 CTNNA3 29119 10 67710331 NM_013266 NP_037398 C/T S596N plus 23964243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 10q22.2 "catenin (cadherin-associated protein), alpha 3" 28132 rs4589553 CCNF 899 16 2423011 NM_001761 NP_001752 A/G A74T plus 7857947 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 HapMap 16p13.3 cyclin F 28133 rs4598663 OVTN 341277 11 7673422 NM_198185 NP_937828 C/G G413R plus 23810019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 11p15.4 oviductin protease 28134 rs4598663 OVTN 341277 11 7673422 NM_198185 NP_937828 C/G G413R plus 23810019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11p15.4 oviductin protease 28135 rs4598663 OVTN 341277 11 7673422 NM_198185 NP_937828 C/G G413R plus 23810019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 oviductin protease 28136 rs4606855 EMR3 84658 19 14630339 NM_032571 NP_115960 C/G E127Q plus 24518557 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by doubleHit,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 3" 28137 rs4606855 EMR3 84658 19 14630339 NM_032571 NP_115960 C/G E127Q plus 24518557 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 3" 28138 rs4606855 EMR3 84658 19 14630339 NM_032571 NP_115960 C/G E127Q plus 24518557 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 3" 28139 rs4613695 FBXO38 81545 5 147787503 NM_205836 NP_995308 A/G R818K plus 6256083 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 HapMap 5q33.1 F-box protein 38 28140 rs4616798 MLF1IP 79682 4 186009293 NM_024629 NP_078905 C/T I214M plus 23733630 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 28141 rs4616798 MLF1IP 79682 4 186009293 NM_024629 NP_078905 C/T I214M plus 23733630 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 28142 rs4616798 MLF1IP 79682 4 186009293 NM_024629 NP_078905 C/T I214M plus 23733630 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 28143 rs4619071 USP54 159195 10 74946499 NM_152586 NP_689799 C/T D319N plus 7954630 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 HapMap 10q22.3 ubiquitin specific protease 54 28144 rs4624233 KRT25D 162605 17 36209487 NM_181535 NP_853513 A/G A62V plus 7963873 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,doubleHit,freq,cluster" 17q21.2 keratin 25D 28145 rs4630153 ALG6 29929 1 63593573 NM_013339 NP_037471 C/T S304F plus 24635473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1p31.3 "asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase)" 28146 rs4630153 ALG6 29929 1 63593573 NM_013339 NP_037471 C/T S304F plus 24635473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 1p31.3 "asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase)" 28147 rs4630153 ALG6 29929 1 63593573 NM_013339 NP_037471 C/T S304F plus 24635473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1p31.3 "asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase)" 28148 rs4645434 SYNE1 23345 6 152757375 NM_033071 NP_149062 A/C E3989D plus 24040480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28149 rs4645434 SYNE1 23345 6 152757375 NM_033071 NP_149062 A/C E3989D plus 24040480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28150 rs4645434 SYNE1 23345 6 152757375 NM_033071 NP_149062 A/C E3989D plus 24040480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28151 rs4645434 SYNE1 23345 6 152757375 NM_182961 NP_892006 A/C E4060D plus 24040480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28152 rs4645434 SYNE1 23345 6 152757375 NM_182961 NP_892006 A/C E4060D plus 24040480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28153 rs4645434 SYNE1 23345 6 152757375 NM_182961 NP_892006 A/C E4060D plus 24040480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 28154 rs4645959 MYC 4609 8 128819722 NM_002467 NP_002458 A/G N11S plus 6310760 693 EGP_SNPS PDR90 NIHPDR 172 0.02 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28155 rs4645959 MYC 4609 8 128819722 NM_002467 NP_002458 A/G N11S plus 24506255 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28156 rs4645959 MYC 4609 8 128819722 NM_002467 NP_002458 A/G N11S plus 24506255 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28157 rs4645959 MYC 4609 8 128819722 NM_002467 NP_002458 A/G N11S plus 24506255 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28158 rs4645960 MYC 4609 8 128820168 NM_002467 NP_002458 G/T G160C plus 6310761 693 EGP_SNPS PDR90 NIHPDR 166 0.01 111 by freq 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28159 rs4645961 MYC 4609 8 128820198 NM_002467 NP_002458 A/G V170I plus 6310762 693 EGP_SNPS PDR90 NIHPDR 164 0.02 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28160 rs4645961 MYC 4609 8 128820198 NM_002467 NP_002458 A/G V170I plus 23518911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28161 rs4645961 MYC 4609 8 128820198 NM_002467 NP_002458 A/G V170I plus 23518911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28162 rs4645961 MYC 4609 8 128820198 NM_002467 NP_002458 A/G V170I plus 23518911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28163 rs4645968 MYC 4609 8 128822031 NM_002467 NP_002458 C/T A322V plus 6310770 693 EGP_SNPS PDR90 NIHPDR 176 0.01 111 by freq 8q24.12-q24.13 v-myc myelocytomatosis viral oncogene homolog (avian) 28164 rs4646227 SLC15A1 6564 13 98156402 NM_005073 NP_005064 C/G G419A minus 11089471 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 28165 rs4646227 SLC15A1 6564 13 98156402 NM_005073 NP_005064 C/G G419A minus 12580387 897 PHARMGKB_PMT PA128183726 494 0.08 123 "HapMap,doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 28166 rs4646227 SLC15A1 6564 13 98156402 NM_005073 NP_005064 C/G G419A minus 23501390 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 28167 rs4646227 SLC15A1 6564 13 98156402 NM_005073 NP_005064 C/G G419A minus 23501390 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 28168 rs4646227 SLC15A1 6564 13 98156402 NM_005073 NP_005064 C/G G419A minus 23501390 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 28169 rs4646487 CYP4B1 1580 1 46991195 NM_000779 NP_000770 C/T R173W plus 23160462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28170 rs4646487 CYP4B1 1580 1 46991195 NM_000779 NP_000770 C/T R173W plus 23160462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28171 rs4646487 CYP4B1 1580 1 46991195 NM_000779 NP_000770 C/T R173W plus 23160462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28172 rs4646491 CYP4B1 1580 1 46992904 NM_000779 NP_000770 C/T R340C plus 23843598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28173 rs4646491 CYP4B1 1580 1 46992904 NM_000779 NP_000770 C/T R340C plus 23843598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28174 rs4646491 CYP4B1 1580 1 46992904 NM_000779 NP_000770 C/T R340C plus 23843598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq" 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 28175 rs4646750 FTHFD 10840 3 127308701 NM_012190 NP_036322 A/G I812V minus 12674967 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.12 118 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 28176 rs4646750 FTHFD 10840 3 127308701 NM_012190 NP_036322 A/G I812V minus 12674967 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.07 118 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 28177 rs4646750 FTHFD 10840 3 127308701 NM_012190 NP_036322 A/G I812V minus 12674967 776 SNP500CANCER AFR1 African / African-American (24) 48 0.23 118 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 28178 rs4646750 FTHFD 10840 3 127308701 NM_012190 NP_036322 A/G I812V minus 12674967 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 118 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 28179 rs4646750 FTHFD 10840 3 127308701 NM_012190 NP_036322 A/G I812V minus 12674967 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.1 118 "by cluster,freq" 3q21.2 formyltetrahydrofolate dehydrogenase 28180 rs4647297 CASP2 835 7 142508198 NM_001224 NP_001215 C/G V141L plus 6313011 693 EGP_SNPS PDR90 NIHPDR 160 0.05 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28181 rs4647297 CASP2 835 7 142508198 NM_001224 NP_001215 C/G V141L plus 23433078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28182 rs4647297 CASP2 835 7 142508198 NM_001224 NP_001215 C/G V141L plus 23433078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28183 rs4647297 CASP2 835 7 142508198 NM_001224 NP_001215 C/G V141L plus 23433078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28184 rs4647297 CASP2 835 7 142508198 NM_032982 NP_116764 C/G V172L plus 6313011 693 EGP_SNPS PDR90 NIHPDR 160 0.05 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28185 rs4647297 CASP2 835 7 142508198 NM_032982 NP_116764 C/G V172L plus 23433078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28186 rs4647297 CASP2 835 7 142508198 NM_032982 NP_116764 C/G V172L plus 23433078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28187 rs4647297 CASP2 835 7 142508198 NM_032982 NP_116764 C/G V172L plus 23433078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28188 rs4647338 CASP2 835 7 142518963 NM_032982 NP_116764 C/G R441G plus 6313054 693 EGP_SNPS PDR90 NIHPDR 172 0.02 111 by freq 7q34-q35 "caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)" 28189 rs4647852 CLCA1 1179 1 86666794 NM_001285 NP_001276 A/G K426R plus 6313715 808 PLUMEDUT population-1 256 1 111 by freq 1p31-p22 "chloride channel, calcium activated, family member 1" 28190 rs4647852 CLCA1 1179 1 86666794 NM_001285 NP_001276 A/G K426R plus 6313715 809 PLUMEDUT population-2 356 0.01 111 by freq 1p31-p22 "chloride channel, calcium activated, family member 1" 28191 rs4647899 AKAP6 9472 14 32363282 NM_004274 NP_004265 A/T F2171Y plus 24092353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 28192 rs4647899 AKAP6 9472 14 32363282 NM_004274 NP_004265 A/T F2171Y plus 24092353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 28193 rs4647899 AKAP6 9472 14 32363282 NM_004274 NP_004265 A/T F2171Y plus 24092353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 28194 rs4647930 FGFRL1 53834 4 1008535 NM_021923 NP_068742 A/C P362Q plus 6313858 835 SBOYD Craniosynostosis 40 0.23 121 "by doubleHit,freq,cluster" 4p16 fibroblast growth factor receptor-like 1 28195 rs4647932 FGFRL1 53834 4 1008841 NM_021923 NP_068742 C/T P464L plus 6313860 835 SBOYD Craniosynostosis 40 0.08 111 "HapMap,freq" 4p16 fibroblast growth factor receptor-like 1 28196 rs4647932 FGFRL1 53834 4 1008841 NM_021923 NP_068742 C/T P464L plus 6313860 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 111 "HapMap,freq" 4p16 fibroblast growth factor receptor-like 1 28197 rs4648072 NFKB1 4790 4 103875893 NM_003998 NP_003989 A/G M507V plus 6395926 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28198 rs4648072 NFKB1 4790 4 103875893 NM_003998 NP_003989 A/G M507V plus 23394935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28199 rs4648072 NFKB1 4790 4 103875893 NM_003998 NP_003989 A/G M507V plus 23394935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28200 rs4648072 NFKB1 4790 4 103875893 NM_003998 NP_003989 A/G M507V plus 23394935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28201 rs4648099 NFKB1 4790 4 103886010 NM_003998 NP_003989 G/T H712Q plus 6395957 693 EGP_SNPS PDR90 NIHPDR 176 0.02 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28202 rs4648099 NFKB1 4790 4 103886010 NM_003998 NP_003989 G/T H712Q plus 23395084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28203 rs4648099 NFKB1 4790 4 103886010 NM_003998 NP_003989 G/T H712Q plus 23395084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28204 rs4648099 NFKB1 4790 4 103886010 NM_003998 NP_003989 G/T H712Q plus 23395084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q24 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105) 28205 rs4656197 PACE-1 57147 1 166555376 NM_020423 NP_065156 C/T Q567R plus 24267405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28206 rs4656197 PACE-1 57147 1 166555376 NM_020423 NP_065156 C/T Q567R plus 24267405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28207 rs4656197 PACE-1 57147 1 166555376 NM_020423 NP_065156 C/T Q567R plus 24267405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28208 rs4656197 PACE-1 57147 1 166555376 NM_181093 NP_851607 C/T Q621R plus 24267405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28209 rs4656197 PACE-1 57147 1 166555376 NM_181093 NP_851607 C/T Q621R plus 24267405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28210 rs4656197 PACE-1 57147 1 166555376 NM_181093 NP_851607 C/T Q621R plus 24267405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q23.3 ezrin-binding partner PACE-1 28211 rs4665223 KBTBD9 114818 2 23686242 XM_496546 XP_496546 G/T L2637V plus 23172470 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28212 rs4665223 KBTBD9 114818 2 23686242 XM_496546 XP_496546 G/T L2637V plus 23172470 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28213 rs4665223 KBTBD9 114818 2 23686242 XM_496546 XP_496546 G/T L2637V plus 23172470 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28214 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 14878127 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28215 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 14878127 902 AFFY Caucasian 22 0.18 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28216 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 14878127 903 AFFY Asian 12 0.33 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28217 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 14878127 904 AFFY CEPH 12 0.17 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28218 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 14878127 905 AFFY PDpanel 48 0.4 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28219 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 24253842 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28220 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 24253842 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28221 rs4665606 KBTBD9 114818 2 23673065 XM_496546 XP_496546 C/T T2503I plus 24253842 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 28222 rs4666602 NCKAP1 10787 2 183625024 NM_013436 NP_038464 C/T D941N plus 6425200 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 111 HapMap 2q32 NCK-associated protein 1 28223 rs4666602 NCKAP1 10787 2 183625024 NM_205842 NP_995314 C/T D947N plus 6425200 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 111 HapMap 2q32 NCK-associated protein 1 28224 rs4667591 LRP2 4036 2 169828939 NM_004525 NP_004516 G/T I4210L plus 23903166 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28225 rs4667591 LRP2 4036 2 169828939 NM_004525 NP_004516 G/T I4210L plus 23903166 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28226 rs4667591 LRP2 4036 2 169828939 NM_004525 NP_004516 G/T I4210L plus 23903166 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28227 rs4668123 LRP2 4036 2 169879012 NM_004525 NP_004516 C/T A2872T plus 23903504 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28228 rs4668123 LRP2 4036 2 169879012 NM_004525 NP_004516 C/T A2872T plus 23903504 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28229 rs4668123 LRP2 4036 2 169879012 NM_004525 NP_004516 C/T A2872T plus 23903504 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 2q24-q31 low density lipoprotein-related protein 2 28230 rs4668246 MYO3B 140469 2 171051348 NM_138995 NP_620482 A/G K309E plus 24651345 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq" 2q31.1-q31.2 myosin IIIB 28231 rs4668246 MYO3B 140469 2 171051348 NM_138995 NP_620482 A/G K309E plus 24651345 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 2q31.1-q31.2 myosin IIIB 28232 rs4668246 MYO3B 140469 2 171051348 NM_138995 NP_620482 A/G K309E plus 24651345 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq" 2q31.1-q31.2 myosin IIIB 28233 rs4669751 GREB1 9687 2 11657291 NM_014668 NP_055483 C/T V122A plus 6429691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq,cluster" 2p25.1 GREB1 protein 28234 rs4669751 GREB1 9687 2 11657291 NM_033090 NP_149081 C/T V122A plus 6429691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq,cluster" 2p25.1 GREB1 protein 28235 rs4669751 GREB1 9687 2 11657291 NM_148903 NP_683701 C/T V122A plus 6429691 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq,cluster" 2p25.1 GREB1 protein 28236 rs4674941 DOCK10 55619 2 225496406 XM_371595 XP_371595 C/G I1495M plus 6437224 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,doubleHit,freq,cluster" 2q36.3 dedicator of cytokinesis 10 28237 rs4674941 DOCK10 55619 2 225496406 XM_371595 XP_371595 C/G I1495M plus 23671901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 2q36.3 dedicator of cytokinesis 10 28238 rs4674941 DOCK10 55619 2 225496406 XM_371595 XP_371595 C/G I1495M plus 23671901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 2q36.3 dedicator of cytokinesis 10 28239 rs4674941 DOCK10 55619 2 225496406 XM_371595 XP_371595 C/G I1495M plus 23671901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 2q36.3 dedicator of cytokinesis 10 28240 rs4675141 COL4A4 1286 2 227741337 NM_000092 NP_000083 A/G P1004L plus 6437502 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 28241 rs4675141 COL4A4 1286 2 227741337 NM_000092 NP_000083 A/G P1004L plus 24273310 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 28242 rs4675141 COL4A4 1286 2 227741337 NM_000092 NP_000083 A/G P1004L plus 24273310 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 28243 rs4675141 COL4A4 1286 2 227741337 NM_000092 NP_000083 A/G P1004L plus 24273310 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 2q35-q37 "collagen, type IV, alpha 4" 28244 rs4678193 KPNA1 3836 3 123668878 NM_002264 NP_002255 C/T S73N plus 6441869 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 3q21 karyopherin alpha 1 (importin alpha 5) 28245 rs4682752 ZNF501 115560 3 44750966 NM_145044 NP_659481 A/G M8V plus 24370184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 3p21.32 zinc finger protein 501 28246 rs4682752 ZNF501 115560 3 44750966 NM_145044 NP_659481 A/G M8V plus 24370184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 3p21.32 zinc finger protein 501 28247 rs4682752 ZNF501 115560 3 44750966 NM_145044 NP_659481 A/G M8V plus 24370184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 3p21.32 zinc finger protein 501 28248 rs4683158 FYCO1 79443 3 45985081 NM_024513 NP_078789 C/T R250Q plus 24320363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 3p21.32 FYVE and coiled-coil domain containing 1 28249 rs4683158 FYCO1 79443 3 45985081 NM_024513 NP_078789 C/T R250Q plus 24320363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 3p21.32 FYVE and coiled-coil domain containing 1 28250 rs4683158 FYCO1 79443 3 45985081 NM_024513 NP_078789 C/T R250Q plus 24320363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3p21.32 FYVE and coiled-coil domain containing 1 28251 rs4687657 ITIH4 3700 3 52827578 NM_002218 NP_002209 G/T P698T plus 23310736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 28252 rs4687657 ITIH4 3700 3 52827578 NM_002218 NP_002209 G/T P698T plus 23310736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 28253 rs4687657 ITIH4 3700 3 52827578 NM_002218 NP_002209 G/T P698T plus 23310736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 28254 rs4689254 ZNF509 166793 4 4422677 NM_145291 NP_660334 A/G A348T plus 23952334 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4p16.2 zinc finger protein 509 28255 rs4689254 ZNF509 166793 4 4422677 NM_145291 NP_660334 A/G A348T plus 23952334 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 4p16.2 zinc finger protein 509 28256 rs4689254 ZNF509 166793 4 4422677 NM_145291 NP_660334 A/G A348T plus 23952334 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 4p16.2 zinc finger protein 509 28257 rs4689278 EVC2 132884 4 5808974 NM_147127 NP_667338 C/T S150G plus 6458610 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.24 120 "HapMap,doubleHit,freq" 4p16.2-p16.1 Ellis van Creveld syndrome 2 (limbin) 28258 rs4698803 EGF 1950 4 111272031 NM_001963 NP_001954 A/T E920V plus 16340424 693 EGP_SNPS PDR90 NIHPDR 176 0.1 123 "by doubleHit,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 28259 rs4698803 EGF 1950 4 111272031 NM_001963 NP_001954 A/T E920V plus 24326010 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 28260 rs4698803 EGF 1950 4 111272031 NM_001963 NP_001954 A/T E920V plus 24326010 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 28261 rs4698803 EGF 1950 4 111272031 NM_001963 NP_001954 A/T E920V plus 24326010 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 4q25 epidermal growth factor (beta-urogastrone) 28262 rs4701997 DNAH5 1767 5 13947894 NM_001369 NP_001360 A/T I766L plus 24420777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.43 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 28263 rs4701997 DNAH5 1767 5 13947894 NM_001369 NP_001360 A/T I766L plus 24420777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 28264 rs4701997 DNAH5 1767 5 13947894 NM_001369 NP_001360 A/T I766L plus 24420777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 28265 rs4707358 GJB7 375519 6 88051291 NM_198568 NP_940970 A/G T20I plus 24388166 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 6q15 "gap junction protein, beta 7" 28266 rs4707358 GJB7 375519 6 88051291 NM_198568 NP_940970 A/G T20I plus 24388166 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q15 "gap junction protein, beta 7" 28267 rs4707358 GJB7 375519 6 88051291 NM_198568 NP_940970 A/G T20I plus 24388166 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by cluster,freq" 6q15 "gap junction protein, beta 7" 28268 rs4707569 MDN1 23195 6 90554310 NM_014611 NP_055426 A/C F440V plus 24016989 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q15 "MDN1, midasin homolog (yeast)" 28269 rs4707569 MDN1 23195 6 90554310 NM_014611 NP_055426 A/C F440V plus 24016989 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6q15 "MDN1, midasin homolog (yeast)" 28270 rs4707569 MDN1 23195 6 90554310 NM_014611 NP_055426 A/C F440V plus 24016989 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 6q15 "MDN1, midasin homolog (yeast)" 28271 rs4712138 DST 667 6 56571369 NM_015548 NP_056363 C/T Q1308R plus 23348174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28272 rs4712138 DST 667 6 56571369 NM_015548 NP_056363 C/T Q1308R plus 23348174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28273 rs4712138 DST 667 6 56571369 NM_015548 NP_056363 C/T Q1308R plus 23348174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28274 rs4712138 DST 667 6 56571369 NM_183380 NP_899236 C/T Q1634R plus 23348174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28275 rs4712138 DST 667 6 56571369 NM_183380 NP_899236 C/T Q1634R plus 23348174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28276 rs4712138 DST 667 6 56571369 NM_183380 NP_899236 C/T Q1634R plus 23348174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28277 rs4712990 BTN3A1 11119 6 26521723 NM_007048 NP_008979 A/C P456T plus 24367441 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 3, member A1" 28278 rs4712990 BTN3A1 11119 6 26521723 NM_007048 NP_008979 A/C P456T plus 24367441 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 3, member A1" 28279 rs4712990 BTN3A1 11119 6 26521723 NM_007048 NP_008979 A/C P456T plus 24367441 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 3, member A1" 28280 rs4713956 PNPLA1 285848 6 36383436 NM_173676 NP_775947 C/T S427P plus 10289031 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.26 123 "HapMap,doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 28281 rs4713956 PNPLA1 285848 6 36383436 NM_173676 NP_775947 C/T S427P plus 23990331 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 28282 rs4713956 PNPLA1 285848 6 36383436 NM_173676 NP_775947 C/T S427P plus 23990331 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 28283 rs4713956 PNPLA1 285848 6 36383436 NM_173676 NP_775947 C/T S427P plus 23990331 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 28284 rs4715227 PKHD1 5314 6 51599843 NM_138694 NP_619639 C/T Q3899R plus 23771066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 28285 rs4715227 PKHD1 5314 6 51599843 NM_138694 NP_619639 C/T Q3899R plus 23771066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 28286 rs4715227 PKHD1 5314 6 51599843 NM_138694 NP_619639 C/T Q3899R plus 23771066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 28287 rs4715630 DST 667 6 56525241 NM_015548 NP_056363 C/T M2813I plus 24690793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28288 rs4715630 DST 667 6 56525241 NM_015548 NP_056363 C/T M2813I plus 24690793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28289 rs4715630 DST 667 6 56525241 NM_015548 NP_056363 C/T M2813I plus 24690793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28290 rs4715630 DST 667 6 56525241 NM_183380 NP_899236 C/T M3139I plus 24690793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28291 rs4715630 DST 667 6 56525241 NM_183380 NP_899236 C/T M3139I plus 24690793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28292 rs4715630 DST 667 6 56525241 NM_183380 NP_899236 C/T M3139I plus 24690793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28293 rs4715631 DST 667 6 56525504 NM_015548 NP_056363 C/T T2726A plus 23774351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28294 rs4715631 DST 667 6 56525504 NM_015548 NP_056363 C/T T2726A plus 23774351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28295 rs4715631 DST 667 6 56525504 NM_015548 NP_056363 C/T T2726A plus 23774351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28296 rs4715631 DST 667 6 56525504 NM_183380 NP_899236 C/T T3052A plus 23774351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28297 rs4715631 DST 667 6 56525504 NM_183380 NP_899236 C/T T3052A plus 23774351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28298 rs4715631 DST 667 6 56525504 NM_183380 NP_899236 C/T T3052A plus 23774351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 28299 rs4721888 7A5 346389 7 19974635 NM_182762 NP_877439 C/G L31V plus 24162524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 28300 rs4721888 7A5 346389 7 19974635 NM_182762 NP_877439 C/G L31V plus 24162524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 28301 rs4721888 7A5 346389 7 19974635 NM_182762 NP_877439 C/G L31V plus 24162524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 7p15.3 putative binding protein 7a5 28302 rs4722266 STK31 56164 7 23567269 NM_031414 NP_113602 A/G G410E plus 17923585 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28303 rs4722266 STK31 56164 7 23567269 NM_031414 NP_113602 A/G G410E plus 23192930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28304 rs4722266 STK31 56164 7 23567269 NM_031414 NP_113602 A/G G410E plus 23192930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28305 rs4722266 STK31 56164 7 23567269 NM_031414 NP_113602 A/G G410E plus 23192930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28306 rs4722266 STK31 56164 7 23567269 NM_032944 NP_116562 A/G G387E plus 17923585 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.15 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28307 rs4722266 STK31 56164 7 23567269 NM_032944 NP_116562 A/G G387E plus 23192930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28308 rs4722266 STK31 56164 7 23567269 NM_032944 NP_116562 A/G G387E plus 23192930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28309 rs4722266 STK31 56164 7 23567269 NM_032944 NP_116562 A/G G387E plus 23192930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7p15.3 serine/threonine kinase 31 28310 rs4723010 INMT 11185 7 30565088 NM_006774 NP_006765 A/G D28N plus 24495168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 7p15.3-p15.2 indolethylamine N-methyltransferase 28311 rs4723010 INMT 11185 7 30565088 NM_006774 NP_006765 A/G D28N plus 24495168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 7p15.3-p15.2 indolethylamine N-methyltransferase 28312 rs4723010 INMT 11185 7 30565088 NM_006774 NP_006765 A/G D28N plus 24495168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 7p15.3-p15.2 indolethylamine N-methyltransferase 28313 rs4724277 DBNL 28988 7 43870050 XM_498187 XP_498187 A/C E184A plus 6510970 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 7p13 src homology 3 domain-containing protein HIP-55 28314 rs4724277 DBNL 28988 7 43870050 XM_498187 XP_498187 A/C E184A plus 23450917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 7p13 src homology 3 domain-containing protein HIP-55 28315 rs4724277 DBNL 28988 7 43870050 XM_498187 XP_498187 A/C E184A plus 23450917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 7p13 src homology 3 domain-containing protein HIP-55 28316 rs4724277 DBNL 28988 7 43870050 XM_498187 XP_498187 A/C E184A plus 23450917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7p13 src homology 3 domain-containing protein HIP-55 28317 rs4725617 EPHA1 2041 7 142613937 NM_005232 NP_005223 A/G V160A plus 23768517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.1 123 "by doubleHit,freq,cluster" 7q34 EphA1 28318 rs4725617 EPHA1 2041 7 142613937 NM_005232 NP_005223 A/G V160A plus 23768517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 "by doubleHit,freq,cluster" 7q34 EphA1 28319 rs4725617 EPHA1 2041 7 142613937 NM_005232 NP_005223 A/G V160A plus 23768517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 1 123 "by doubleHit,freq,cluster" 7q34 EphA1 28320 rs4728712 SRCRB4D 136853 7 75674346 NM_080744 NP_542782 C/T R128H plus 6517550 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 120 "HapMap,doubleHit,freq,cluster" 7q11.23 "scavenger receptor cysteine rich domain containing, group B (4 domains)" 28321 rs4729627 MUC3B 57876 7 100195079 XM_168578 XP_168578 A/C P337T plus 23914209 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 7q22 mucin 3B 28322 rs4729627 MUC3B 57876 7 100195079 XM_168578 XP_168578 A/C P337T plus 23914209 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 7q22 mucin 3B 28323 rs4729627 MUC3B 57876 7 100195079 XM_168578 XP_168578 A/C P337T plus 23914209 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 by freq 7q22 mucin 3B 28324 rs4730283 LAMB1 3912 7 107187940 NM_002291 NP_002282 C/T Q1022R plus 24451746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.32 123 "by doubleHit,freq" 7q22 "laminin, beta 1" 28325 rs4730283 LAMB1 3912 7 107187940 NM_002291 NP_002282 C/T Q1022R plus 24451746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 "by doubleHit,freq" 7q22 "laminin, beta 1" 28326 rs4730283 LAMB1 3912 7 107187940 NM_002291 NP_002282 C/T Q1022R plus 24451746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.18 123 "by doubleHit,freq" 7q22 "laminin, beta 1" 28327 rs4735133 PKHD1L1 93035 8 110506560 NM_177531 NP_803875 A/G H923R plus 24083586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 28328 rs4735133 PKHD1L1 93035 8 110506560 NM_177531 NP_803875 A/G H923R plus 24083586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 28329 rs4735133 PKHD1L1 93035 8 110506560 NM_177531 NP_803875 A/G H923R plus 24083586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 28330 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 6531880 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28331 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 14898624 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28332 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 14898624 902 AFFY Caucasian 24 0.13 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28333 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 14898624 903 AFFY Asian 10 0.2 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28334 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 14898624 904 AFFY CEPH 10 1 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28335 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 14898624 905 AFFY PDpanel 46 0.09 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28336 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 24036929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28337 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 24036929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28338 rs4738070 NCOA2 10499 8 71201672 NM_006540 NP_006531 C/G M1282I plus 24036929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 8q13.2 nuclear receptor coactivator 2 28339 rs4740046 CA13 377677 8 86350386 NM_198584 NP_940986 A/G N68S plus 6534775 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 8q21.2 carbonic anhydrase XIII 28340 rs4740412 LAMC3 10319 9 130992562 NM_006059 NP_006050 A/G R1459Q plus 6535329 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 123 "HapMap,doubleHit,freq" 9q31-q34 "laminin, gamma 3" 28341 rs4740412 LAMC3 10319 9 130992562 NM_006059 NP_006050 A/G R1459Q plus 24555579 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "HapMap,doubleHit,freq" 9q31-q34 "laminin, gamma 3" 28342 rs4740412 LAMC3 10319 9 130992562 NM_006059 NP_006050 A/G R1459Q plus 24555579 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq" 9q31-q34 "laminin, gamma 3" 28343 rs4740412 LAMC3 10319 9 130992562 NM_006059 NP_006050 A/G R1459Q plus 24555579 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,freq" 9q31-q34 "laminin, gamma 3" 28344 rs4740548 MPDZ 8777 9 13180162 NM_003829 NP_003820 A/T E702V plus 6535527 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 9p24-p22 multiple PDZ domain protein 28345 rs4741289 MPDZ 8777 9 13180163 NM_003829 NP_003820 C/T E702K plus 6536598 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 9p24-p22 multiple PDZ domain protein 28346 rs4742754 COL15A1 1306 9 98827911 NM_001855 NP_001846 A/G M204V plus 24496377 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 28347 rs4742754 COL15A1 1306 9 98827911 NM_001855 NP_001846 A/G M204V plus 24496377 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 28348 rs4742754 COL15A1 1306 9 98827911 NM_001855 NP_001846 A/G M204V plus 24496377 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 9q21-q22 "collagen, type XV, alpha 1" 28349 rs4747096 ADAMTS14 140766 10 72188015 NM_080722 NP_542453 A/G E1049G plus 24102134 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28350 rs4747096 ADAMTS14 140766 10 72188015 NM_080722 NP_542453 A/G E1049G plus 24102134 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28351 rs4747096 ADAMTS14 140766 10 72188015 NM_080722 NP_542453 A/G E1049G plus 24102134 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28352 rs4747096 ADAMTS14 140766 10 72188015 NM_139155 NP_631894 A/G E1052G plus 24102134 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28353 rs4747096 ADAMTS14 140766 10 72188015 NM_139155 NP_631894 A/G E1052G plus 24102134 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28354 rs4747096 ADAMTS14 140766 10 72188015 NM_139155 NP_631894 A/G E1052G plus 24102134 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 28355 rs4747647 TAF3 83860 10 8046804 XM_291729 XP_291729 A/G N709S plus 6545953 1303 SEQUENOM CEPH CEPH (92) 92 0.41 123 "by doubleHit,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 28356 rs4747647 TAF3 83860 10 8046804 XM_291729 XP_291729 A/G N709S plus 23572859 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 28357 rs4747647 TAF3 83860 10 8046804 XM_291729 XP_291729 A/G N709S plus 23572859 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 28358 rs4747647 TAF3 83860 10 8046804 XM_291729 XP_291729 A/G N709S plus 23572859 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 10p15.1 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" 28359 rs4752904 PTPRJ 5795 11 48122843 NM_002843 NP_002834 C/G E872D plus 24698066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 28360 rs4752904 PTPRJ 5795 11 48122843 NM_002843 NP_002834 C/G E872D plus 24698066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 28361 rs4752904 PTPRJ 5795 11 48122843 NM_002843 NP_002834 C/G E872D plus 24698066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 28362 rs4755779 EXT2 2132 11 44085962 NM_000401 NP_000392 A/G M42V plus 6559121 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 11p12-p11 exostoses (multiple) 2 28363 rs4755779 EXT2 2132 11 44085962 NM_207122 NP_997005 A/G M42V plus 6559121 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 11p12-p11 exostoses (multiple) 2 28364 rs4757986 OR52E4 390081 11 5862649 XM_372368 XP_372368 G/T R184M plus 24512096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28365 rs4757986 OR52E4 390081 11 5862649 XM_372368 XP_372368 G/T R184M plus 24512096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28366 rs4757986 OR52E4 390081 11 5862649 XM_372368 XP_372368 G/T R184M plus 24512096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28367 rs4758168 OR52E4 390081 11 5862624 XM_372368 XP_372368 A/G V176I plus 24512087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28368 rs4758168 OR52E4 390081 11 5862624 XM_372368 XP_372368 A/G V176I plus 24512087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28369 rs4758168 OR52E4 390081 11 5862624 XM_372368 XP_372368 A/G V176I plus 24512087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 28370 rs4758443 PCDH16 8642 11 6605000 NM_003737 NP_003728 A/G T1949M plus 6563207 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq" 11p15.4 protocadherin 16 dachsous-like (Drosophila) 28371 rs4763862 GPR19 2842 12 12706085 NM_006143 NP_006134 C/T V189I plus 23789762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 12p12.3 G protein-coupled receptor 19 28372 rs4763862 GPR19 2842 12 12706085 NM_006143 NP_006134 C/T V189I plus 23789762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "by cluster,freq" 12p12.3 G protein-coupled receptor 19 28373 rs4763862 GPR19 2842 12 12706085 NM_006143 NP_006134 C/T V189I plus 23789762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p12.3 G protein-coupled receptor 19 28374 rs4764643 DRIM 27340 12 100196002 NM_014503 NP_055318 C/G S502C plus 6572144 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.17 121 "HapMap,doubleHit,freq" 12q23 down-regulated in metastasis 28375 rs4767884 PXN 5829 12 119124697 NM_002859 NP_002850 C/T S73G plus 24452475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 12q24.31 paxillin 28376 rs4767884 PXN 5829 12 119124697 NM_002859 NP_002850 C/T S73G plus 24452475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 12q24.31 paxillin 28377 rs4767884 PXN 5829 12 119124697 NM_002859 NP_002850 C/T S73G plus 24452475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12q24.31 paxillin 28378 rs4777035 ITGA11 22801 15 66392223 NM_012211 NP_036343 A/G P972L plus 23411071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 28379 rs4777035 ITGA11 22801 15 66392223 NM_012211 NP_036343 A/G P972L plus 23411071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 28380 rs4777035 ITGA11 22801 15 66392223 NM_012211 NP_036343 A/G P972L plus 23411071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 15q22.3-q23 "integrin, alpha 11" 28381 rs4780144 RYR3 6263 15 31741944 NM_001036 NP_001027 C/T R1641C plus 23661938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 15q14-q15 ryanodine receptor 3 28382 rs4780144 RYR3 6263 15 31741944 NM_001036 NP_001027 C/T R1641C plus 23661938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 15q14-q15 ryanodine receptor 3 28383 rs4780144 RYR3 6263 15 31741944 NM_001036 NP_001027 C/T R1641C plus 23661938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 15q14-q15 ryanodine receptor 3 28384 rs4785963 DNAJA3 9093 16 4424397 NM_005147 NP_005138 A/T N75Y plus 24403455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 16p13.3 "DnaJ (Hsp40) homolog, subfamily A, member 3" 28385 rs4785963 DNAJA3 9093 16 4424397 NM_005147 NP_005138 A/T N75Y plus 24403455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 16p13.3 "DnaJ (Hsp40) homolog, subfamily A, member 3" 28386 rs4785963 DNAJA3 9093 16 4424397 NM_005147 NP_005138 A/T N75Y plus 24403455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 16p13.3 "DnaJ (Hsp40) homolog, subfamily A, member 3" 28387 rs4788821 MARVELD3 91862 16 70217811 NM_052858 NP_443090 A/G E60K plus 24516686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 16q22.2 MARVEL (membrane-associating) domain containing 3 28388 rs4788821 MARVELD3 91862 16 70217811 NM_052858 NP_443090 A/G E60K plus 24516686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 16q22.2 MARVEL (membrane-associating) domain containing 3 28389 rs4788821 MARVELD3 91862 16 70217811 NM_052858 NP_443090 A/G E60K plus 24516686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 by freq 16q22.2 MARVEL (membrane-associating) domain containing 3 28390 rs4790555 ZZEF1 23140 17 3914813 NM_015113 NP_055928 A/C S1437A plus 24213127 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 28391 rs4790555 ZZEF1 23140 17 3914813 NM_015113 NP_055928 A/C S1437A plus 24213127 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 28392 rs4790555 ZZEF1 23140 17 3914813 NM_015113 NP_055928 A/C S1437A plus 24213127 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 28393 rs4791641 PFAS 5198 17 8101874 NM_012393 NP_036525 C/T P367L plus 6612289 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,doubleHit,freq" 17p13.1 phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) 28394 rs4792147 ALOX15B 247 17 7892544 NM_001141 NP_001132 A/G Q656R plus 24004299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 28395 rs4792147 ALOX15B 247 17 7892544 NM_001141 NP_001132 A/G Q656R plus 24004299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 28396 rs4792147 ALOX15B 247 17 7892544 NM_001141 NP_001132 A/G Q656R plus 24004299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.35 123 "by doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 28397 rs4793142 DRF1 80174 17 40163953 NM_025104 NP_079380 A/G *171W plus 6614433 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 111 "HapMap,doubleHit" 17q21.31 Dbf4-related factor 1 28398 rs4795690 RHBDL4 162494 17 27649318 NM_138328 NP_612201 A/G V255M plus 6618257 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 17q12 "rhomboid, veinlet-like 4 (Drosophila)" 28399 rs4795690 RHBDL4 162494 17 27649318 NM_138328 NP_612201 A/G V255M plus 24127635 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 17q12 "rhomboid, veinlet-like 4 (Drosophila)" 28400 rs4795690 RHBDL4 162494 17 27649318 NM_138328 NP_612201 A/G V255M plus 24127635 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17q12 "rhomboid, veinlet-like 4 (Drosophila)" 28401 rs4795690 RHBDL4 162494 17 27649318 NM_138328 NP_612201 A/G V255M plus 24127635 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 17q12 "rhomboid, veinlet-like 4 (Drosophila)" 28402 rs4796555 FBXO39 162517 17 6623939 NM_153230 NP_694962 C/T P10S plus 24209079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 17p13.2 F-box protein 39 28403 rs4796555 FBXO39 162517 17 6623939 NM_153230 NP_694962 C/T P10S plus 24209079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 17p13.2 F-box protein 39 28404 rs4796555 FBXO39 162517 17 6623939 NM_153230 NP_694962 C/T P10S plus 24209079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p13.2 F-box protein 39 28405 rs4796603 HAP1 9001 17 37144241 NM_003949 NP_003940 A/T S58T plus 6619616 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,doubleHit,freq,cluster" 17q21.2-q21.3 huntingtin-associated protein 1 (neuroan 1) 28406 rs4796603 HAP1 9001 17 37144241 NM_177977 NP_817084 A/T S58T plus 6619616 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 121 "HapMap,doubleHit,freq,cluster" 17q21.2-q21.3 huntingtin-associated protein 1 (neuroan 1) 28407 rs4798791 ANKRD12 23253 18 9245982 NM_015208 NP_056023 A/G K906R plus 6622933 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq" 18p11.22 ankyrin repeat domain 12 28408 rs4798791 ANKRD12 23253 18 9245982 NM_015208 NP_056023 A/G K906R plus 24451940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq" 18p11.22 ankyrin repeat domain 12 28409 rs4798791 ANKRD12 23253 18 9245982 NM_015208 NP_056023 A/G K906R plus 24451940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq" 18p11.22 ankyrin repeat domain 12 28410 rs4798791 ANKRD12 23253 18 9245982 NM_015208 NP_056023 A/G K906R plus 24451940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq" 18p11.22 ankyrin repeat domain 12 28411 rs4799570 DSG4 147409 18 27240331 NM_177986 NP_817123 A/C I644L plus 24686318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 18q12.1 desmoglein 4 28412 rs4799570 DSG4 147409 18 27240331 NM_177986 NP_817123 A/C I644L plus 24686318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 18q12.1 desmoglein 4 28413 rs4799570 DSG4 147409 18 27240331 NM_177986 NP_817123 A/C I644L plus 24686318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18q12.1 desmoglein 4 28414 rs4801433 ZIM3 114026 19 62338382 NM_052882 NP_443114 C/T I379V plus 6627075 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 28415 rs4801433 ZIM3 114026 19 62338382 NM_052882 NP_443114 C/T I379V plus 24719703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 28416 rs4801433 ZIM3 114026 19 62338382 NM_052882 NP_443114 C/T I379V plus 24719703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 28417 rs4801433 ZIM3 114026 19 62338382 NM_052882 NP_443114 C/T I379V plus 24719703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 28418 rs4801478 ZNF548 147694 19 62601684 NM_152909 NP_690873 A/G A73T plus 6627127 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 121 "HapMap,doubleHit,freq,cluster" 19q13.43 zinc finger protein 548 28419 rs4802029 ZNF571 51276 19 42747452 NM_016536 NP_057620 A/T L573H plus 6627924 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 571 28420 rs4802029 ZNF571 51276 19 42747452 NM_016536 NP_057620 A/T L573H plus 23985901 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 571 28421 rs4802029 ZNF571 51276 19 42747452 NM_016536 NP_057620 A/T L573H plus 23985901 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 571 28422 rs4802029 ZNF571 51276 19 42747452 NM_016536 NP_057620 A/T L573H plus 23985901 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 19q13.13 zinc finger protein 571 28423 rs4802584 RYR1 6261 19 43717206 NM_000540 NP_000531 C/G Q3756E plus 6628761 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 111 "HapMap,doubleHit,freq" 19q13.1 ryanodine receptor 1 (skeletal) 28424 rs4804063 FBN3 84467 19 8082945 NM_032447 NP_115823 C/T S1293G plus 23980463 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 28425 rs4804063 FBN3 84467 19 8082945 NM_032447 NP_115823 C/T S1293G plus 23980463 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 28426 rs4804063 FBN3 84467 19 8082945 NM_032447 NP_115823 C/T S1293G plus 23980463 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 28427 rs4804401 OR7G2 390882 19 9074079 XM_372708 XP_372708 A/C F281V plus 6631411 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 123 "HapMap,doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 28428 rs4804401 OR7G2 390882 19 9074079 XM_372708 XP_372708 A/C F281V plus 24225500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 28429 rs4804401 OR7G2 390882 19 9074079 XM_372708 XP_372708 A/C F281V plus 24225500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 28430 rs4804401 OR7G2 390882 19 9074079 XM_372708 XP_372708 A/C F281V plus 24225500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 28431 rs4804773 FCER2 2208 19 7669248 NM_002002 NP_001993 A/G R62W plus 23398440 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 19p13.3 "Fc fragment of IgE, low affinity II, receptor for (CD23A)" 28432 rs4804773 FCER2 2208 19 7669248 NM_002002 NP_001993 A/G R62W plus 23398440 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 19p13.3 "Fc fragment of IgE, low affinity II, receptor for (CD23A)" 28433 rs4804773 FCER2 2208 19 7669248 NM_002002 NP_001993 A/G R62W plus 23398440 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 19p13.3 "Fc fragment of IgE, low affinity II, receptor for (CD23A)" 28434 rs4807697 PTPRS 5802 19 5165697 NM_002850 NP_002841 A/G C1457R plus 14690595 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 121 "HapMap,freq,cluster" 19p13.3 "protein tyrosine phosphatase, receptor type, S" 28435 rs4807697 PTPRS 5802 19 5165697 NM_130853 NP_570923 A/G C1010R plus 14690595 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 121 "HapMap,freq,cluster" 19p13.3 "protein tyrosine phosphatase, receptor type, S" 28436 rs4807697 PTPRS 5802 19 5165697 NM_130854 NP_570924 A/G C1419R plus 14690595 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 121 "HapMap,freq,cluster" 19p13.3 "protein tyrosine phosphatase, receptor type, S" 28437 rs4807697 PTPRS 5802 19 5165697 NM_130855 NP_570925 A/G C1014R plus 14690595 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 121 "HapMap,freq,cluster" 19p13.3 "protein tyrosine phosphatase, receptor type, S" 28438 rs4807840 BGR 81616 19 6107483 NM_030924 NP_112186 C/T V143A plus 6636133 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 120 "HapMap,doubleHit,freq,cluster" 19p13.3 bubblegum related protein 28439 rs4808209 ZNF101 94039 19 19651159 NM_033204 NP_149981 A/C M121L plus 6636626 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,freq,cluster" 19p13.11 zinc finger protein 101 28440 rs4808209 ZNF101 94039 19 19651159 NM_033204 NP_149981 A/C M121L plus 24065648 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 19p13.11 zinc finger protein 101 28441 rs4808209 ZNF101 94039 19 19651159 NM_033204 NP_149981 A/C M121L plus 24065648 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 19p13.11 zinc finger protein 101 28442 rs4808209 ZNF101 94039 19 19651159 NM_033204 NP_149981 A/C M121L plus 24065648 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 19p13.11 zinc finger protein 101 28443 rs4808383 OR10H1 26539 19 15779802 NM_013940 NP_039228 C/G G16R plus 16802378 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.19 121 "HapMap,doubleHit,freq,cluster" 19p13.1 "olfactory receptor, family 10, subfamily H, member 1" 28444 rs4808907 SFRS14 10147 19 18997541 NM_014884 NP_055699 C/T G206S plus 6637547 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 121 "HapMap,doubleHit,freq,cluster" 19p12 "splicing factor, arginine/serine-rich 14" 28445 rs4814111 SDCBP2 27111 20 1240989 NM_015685 NP_056500 C/T G157R plus 24596214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28446 rs4814111 SDCBP2 27111 20 1240989 NM_015685 NP_056500 C/T G157R plus 24596214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28447 rs4814111 SDCBP2 27111 20 1240989 NM_015685 NP_056500 C/T G157R plus 24596214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28448 rs4814111 SDCBP2 27111 20 1240989 NM_080489 NP_536737 C/T G157R plus 24596214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28449 rs4814111 SDCBP2 27111 20 1240989 NM_080489 NP_536737 C/T G157R plus 24596214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28450 rs4814111 SDCBP2 27111 20 1240989 NM_080489 NP_536737 C/T G157R plus 24596214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 20p13 syndecan binding protein (syntenin) 2 28451 rs4817617 SLC5A3 6526 21 34391063 NM_006933 NP_008864 A/C Q566K plus 6651329 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 121 "HapMap,cluster" 21q22.12 "solute carrier family 5 (inositol transporters), member 3" 28452 rs4819522 TBX1 6899 22 18141336 NM_080646 NP_542377 C/T T350M plus 23788861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 22q11.21 T-box 1 28453 rs4819522 TBX1 6899 22 18141336 NM_080646 NP_542377 C/T T350M plus 23788861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 22q11.21 T-box 1 28454 rs4819522 TBX1 6899 22 18141336 NM_080646 NP_542377 C/T T350M plus 23788861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 22q11.21 T-box 1 28455 rs4820853 SEC14L3 266629 22 29189164 NM_174975 NP_777635 A/G I103T plus 24118524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 28456 rs4820853 SEC14L3 266629 22 29189164 NM_174975 NP_777635 A/G I103T plus 24118524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 28457 rs4820853 SEC14L3 266629 22 29189164 NM_174975 NP_777635 A/G I103T plus 24118524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 3 (S. cerevisiae) 28458 rs4820935 SMTN 6525 22 29815849 NM_006932 NP_008863 C/G A547P plus 8292798 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28459 rs4820935 SMTN 6525 22 29815849 NM_006932 NP_008863 C/G A547P plus 23665298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28460 rs4820935 SMTN 6525 22 29815849 NM_006932 NP_008863 C/G A547P plus 23665298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28461 rs4820935 SMTN 6525 22 29815849 NM_006932 NP_008863 C/G A547P plus 23665298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28462 rs4820935 SMTN 6525 22 29815849 NM_134269 NP_599031 C/G A547P plus 8292798 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28463 rs4820935 SMTN 6525 22 29815849 NM_134269 NP_599031 C/G A547P plus 23665298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28464 rs4820935 SMTN 6525 22 29815849 NM_134269 NP_599031 C/G A547P plus 23665298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28465 rs4820935 SMTN 6525 22 29815849 NM_134269 NP_599031 C/G A547P plus 23665298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28466 rs4820935 SMTN 6525 22 29815849 NM_134270 NP_599032 C/G A547P plus 8292798 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28467 rs4820935 SMTN 6525 22 29815849 NM_134270 NP_599032 C/G A547P plus 23665298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28468 rs4820935 SMTN 6525 22 29815849 NM_134270 NP_599032 C/G A547P plus 23665298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28469 rs4820935 SMTN 6525 22 29815849 NM_134270 NP_599032 C/G A547P plus 23665298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 22q12.2 smoothelin 28470 rs4822063 SREBF2 6721 22 40601242 NM_004599 NP_004590 C/G G595A plus 8298620 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 22q13 sterol regulatory element binding transcription factor 2 28471 rs4822063 SREBF2 6721 22 40601242 NM_004599 NP_004590 C/G G595A plus 23575094 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 22q13 sterol regulatory element binding transcription factor 2 28472 rs4822063 SREBF2 6721 22 40601242 NM_004599 NP_004590 C/G G595A plus 23575094 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 22q13 sterol regulatory element binding transcription factor 2 28473 rs4822063 SREBF2 6721 22 40601242 NM_004599 NP_004590 C/G G595A plus 23575094 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 32 0.28 123 "HapMap,doubleHit,freq,cluster" 22q13 sterol regulatory element binding transcription factor 2 28474 rs4823054 ASC1p100 84164 22 28522579 NM_032204 NP_115580 C/T R509Q plus 8017970 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 117 "HapMap,doubleHit,freq" 22q12.1 ASC-1 complex subunit P100 28475 rs4832524 KCNS3 3790 2 18035251 NM_002252 NP_002243 A/G T450A plus 24634569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 2p24 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3" 28476 rs4832524 KCNS3 3790 2 18035251 NM_002252 NP_002243 A/G T450A plus 24634569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 2p24 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3" 28477 rs4832524 KCNS3 3790 2 18035251 NM_002252 NP_002243 A/G T450A plus 24634569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 2p24 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3" 28478 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 7987552 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.35 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28479 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 7987552 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.2 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28480 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 7987552 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28481 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 23715766 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28482 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 23715766 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28483 rs4833095 TLR1 7096 4 38622276 NM_003263 NP_003254 C/T N248S plus 23715766 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 28484 rs4836639 PPP2R4 5524 9 128976685 NM_021131 NP_066954 A/G R173Q plus 6679921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 28485 rs4836639 PPP2R4 5524 9 128976685 NM_178000 NP_821067 A/G R173Q plus 6679921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 28486 rs4836639 PPP2R4 5524 9 128976685 NM_178001 NP_821068 A/G R208Q plus 6679921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 28487 rs4836639 PPP2R4 5524 9 128976685 NM_178003 NP_821070 A/G R131Q plus 6679921 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 9q34 "protein phosphatase 2A, regulatory subunit B' (PR 53)" 28488 rs4836822 CDK5RAP2 55755 9 120370590 NM_018249 NP_060719 C/G E289Q plus 23583018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28489 rs4836822 CDK5RAP2 55755 9 120370590 NM_018249 NP_060719 C/G E289Q plus 23583018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28490 rs4836822 CDK5RAP2 55755 9 120370590 NM_018249 NP_060719 C/G E289Q plus 23583018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28491 rs4837768 CDK5RAP2 55755 9 120250287 NM_018249 NP_060719 C/G V1540L plus 12022005 1303 SEQUENOM CEPH CEPH (92) 92 0.24 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28492 rs4837768 CDK5RAP2 55755 9 120250287 NM_018249 NP_060719 C/G V1540L plus 23582406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28493 rs4837768 CDK5RAP2 55755 9 120250287 NM_018249 NP_060719 C/G V1540L plus 23582406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28494 rs4837768 CDK5RAP2 55755 9 120250287 NM_018249 NP_060719 C/G V1540L plus 23582406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q33.3 CDK5 regulatory subunit associated protein 2 28495 rs4838544 CHAT 1103 10 50526658 NM_020549 NP_065574 A/G V461M plus 23780289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28496 rs4838544 CHAT 1103 10 50526658 NM_020549 NP_065574 A/G V461M plus 23780289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28497 rs4838544 CHAT 1103 10 50526658 NM_020549 NP_065574 A/G V461M plus 23780289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28498 rs4838544 CHAT 1103 10 50526658 NM_020984 NP_066264 A/G V343M plus 23780289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28499 rs4838544 CHAT 1103 10 50526658 NM_020984 NP_066264 A/G V343M plus 23780289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28500 rs4838544 CHAT 1103 10 50526658 NM_020984 NP_066264 A/G V343M plus 23780289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28501 rs4838544 CHAT 1103 10 50526658 NM_020985 NP_066265 A/G V343M plus 23780289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28502 rs4838544 CHAT 1103 10 50526658 NM_020985 NP_066265 A/G V343M plus 23780289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28503 rs4838544 CHAT 1103 10 50526658 NM_020985 NP_066265 A/G V343M plus 23780289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28504 rs4838544 CHAT 1103 10 50526658 NM_020986 NP_066266 A/G V343M plus 23780289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28505 rs4838544 CHAT 1103 10 50526658 NM_020986 NP_066266 A/G V343M plus 23780289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28506 rs4838544 CHAT 1103 10 50526658 NM_020986 NP_066266 A/G V343M plus 23780289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q11.2 choline acetyltransferase 28507 rs4839469 VANGL1 81839 1 115918465 NM_138959 NP_620409 A/G A116T plus 24260545 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 1p11-p13.1 "vang-like 1 (van gogh, Drosophila)" 28508 rs4839469 VANGL1 81839 1 115918465 NM_138959 NP_620409 A/G A116T plus 24260545 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p11-p13.1 "vang-like 1 (van gogh, Drosophila)" 28509 rs4839469 VANGL1 81839 1 115918465 NM_138959 NP_620409 A/G A116T plus 24260545 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1p11-p13.1 "vang-like 1 (van gogh, Drosophila)" 28510 rs4843074 AKAP13 11214 15 83925487 NM_006738 NP_006729 C/G P1062A plus 23338086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28511 rs4843074 AKAP13 11214 15 83925487 NM_006738 NP_006729 C/G P1062A plus 23338086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28512 rs4843074 AKAP13 11214 15 83925487 NM_006738 NP_006729 C/G P1062A plus 23338086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28513 rs4843074 AKAP13 11214 15 83925487 NM_007200 NP_009131 C/G P1062A plus 23338086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28514 rs4843074 AKAP13 11214 15 83925487 NM_007200 NP_009131 C/G P1062A plus 23338086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28515 rs4843074 AKAP13 11214 15 83925487 NM_007200 NP_009131 C/G P1062A plus 23338086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28516 rs4843075 AKAP13 11214 15 83925559 NM_006738 NP_006729 A/G D1086N plus 23338095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28517 rs4843075 AKAP13 11214 15 83925559 NM_006738 NP_006729 A/G D1086N plus 23338095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28518 rs4843075 AKAP13 11214 15 83925559 NM_006738 NP_006729 A/G D1086N plus 23338095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28519 rs4843075 AKAP13 11214 15 83925559 NM_007200 NP_009131 A/G D1086N plus 23338095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28520 rs4843075 AKAP13 11214 15 83925559 NM_007200 NP_009131 A/G D1086N plus 23338095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28521 rs4843075 AKAP13 11214 15 83925559 NM_007200 NP_009131 A/G D1086N plus 23338095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 15q24-q25 A kinase (PRKA) anchor protein 13 28522 rs4844573 C4BPA 722 1 203693295 NM_000715 NP_000706 C/T I300T plus 24617443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q32 "complement component 4 binding protein, alpha" 28523 rs4844573 C4BPA 722 1 203693295 NM_000715 NP_000706 C/T I300T plus 24617443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q32 "complement component 4 binding protein, alpha" 28524 rs4844573 C4BPA 722 1 203693295 NM_000715 NP_000706 C/T I300T plus 24617443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q32 "complement component 4 binding protein, alpha" 28525 rs4844609 CR1 1378 1 204171311 NM_000573 NP_000564 A/T T1610S plus 24617513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28526 rs4844609 CR1 1378 1 204171311 NM_000573 NP_000564 A/T T1610S plus 24617513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28527 rs4844609 CR1 1378 1 204171311 NM_000573 NP_000564 A/T T1610S plus 24617513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28528 rs4844609 CR1 1378 1 204171311 NM_000651 NP_000642 A/T T2060S plus 24617513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28529 rs4844609 CR1 1378 1 204171311 NM_000651 NP_000642 A/T T2060S plus 24617513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28530 rs4844609 CR1 1378 1 204171311 NM_000651 NP_000642 A/T T2060S plus 24617513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 28531 rs4844658 PLXNA2 5362 1 204778557 NM_025179 NP_079455 C/T E369G plus 24248006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq" 1q32.2 plexin A2 28532 rs4844658 PLXNA2 5362 1 204778557 NM_025179 NP_079455 C/T E369G plus 24248006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq" 1q32.2 plexin A2 28533 rs4844658 PLXNA2 5362 1 204778557 NM_025179 NP_079455 C/T E369G plus 24248006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 1q32.2 plexin A2 28534 rs4845898 VPS13D 55187 1 12273885 NM_015378 NP_056193 A/T E1505V plus 24235719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p36.21 vacuolar protein sorting 13D (yeast) 28535 rs4845898 VPS13D 55187 1 12273885 NM_015378 NP_056193 A/T E1505V plus 24235719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1p36.21 vacuolar protein sorting 13D (yeast) 28536 rs4845898 VPS13D 55187 1 12273885 NM_015378 NP_056193 A/T E1505V plus 24235719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p36.21 vacuolar protein sorting 13D (yeast) 28537 rs4855576 MORC 27136 3 110236928 NM_014429 NP_055244 A/T F470I plus 23272646 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 28538 rs4855576 MORC 27136 3 110236928 NM_014429 NP_055244 A/T F470I plus 23272646 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 28539 rs4855576 MORC 27136 3 110236928 NM_014429 NP_055244 A/T F470I plus 23272646 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3q13 microrchidia homolog (mouse) 28540 rs4859571 ASAHL 27163 4 77214488 NM_014435 NP_055250 C/T V151I plus 24165355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.26 123 "by doubleHit,freq,cluster" 4q21.1 N-acylsphingosine amidohydrolase (acid ceramidase)-like 28541 rs4859571 ASAHL 27163 4 77214488 NM_014435 NP_055250 C/T V151I plus 24165355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 4q21.1 N-acylsphingosine amidohydrolase (acid ceramidase)-like 28542 rs4859571 ASAHL 27163 4 77214488 NM_014435 NP_055250 C/T V151I plus 24165355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 "by doubleHit,freq,cluster" 4q21.1 N-acylsphingosine amidohydrolase (acid ceramidase)-like 28543 rs4859905 FRAS1 80144 4 79344336 NM_020875 NP_065926 A/G D32G plus 23161050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.17 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28544 rs4859905 FRAS1 80144 4 79344336 NM_020875 NP_065926 A/G D32G plus 23161050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28545 rs4859905 FRAS1 80144 4 79344336 NM_020875 NP_065926 A/G D32G plus 23161050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28546 rs4859905 FRAS1 80144 4 79344336 NM_032863 NP_116252 A/G D32G plus 23161050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.17 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28547 rs4859905 FRAS1 80144 4 79344336 NM_032863 NP_116252 A/G D32G plus 23161050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28548 rs4859905 FRAS1 80144 4 79344336 NM_032863 NP_116252 A/G D32G plus 23161050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28549 rs4859905 FRAS1 80144 4 79344336 NM_206841 NP_996672 A/G D32G plus 23161050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.17 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28550 rs4859905 FRAS1 80144 4 79344336 NM_206841 NP_996672 A/G D32G plus 23161050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28551 rs4859905 FRAS1 80144 4 79344336 NM_206841 NP_996672 A/G D32G plus 23161050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.26 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 28552 rs4867440 ZFR 51663 5 32439103 NM_016107 NP_057191 C/T V461I plus 14684148 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,freq,cluster" 5p13.3 zinc finger RNA binding protein 28553 rs4867440 ZFR 51663 5 32439103 NM_016107 NP_057191 C/T V461I plus 24009996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,freq,cluster" 5p13.3 zinc finger RNA binding protein 28554 rs4867440 ZFR 51663 5 32439103 NM_016107 NP_057191 C/T V461I plus 24009996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 5p13.3 zinc finger RNA binding protein 28555 rs4867440 ZFR 51663 5 32439103 NM_016107 NP_057191 C/T V461I plus 24009996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,freq,cluster" 5p13.3 zinc finger RNA binding protein 28556 rs4870723 COL14A1 7373 8 121297860 XM_044622 XP_044622 A/C N556H plus 13423086 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 120 "HapMap,doubleHit,freq,cluster" 8q23 "collagen, type XIV, alpha 1 (undulin)" 28557 rs4871827 DEPDC6 64798 8 121131060 NM_022783 NP_073620 A/G S389N plus 23976041 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.33 123 "by doubleHit,freq,cluster" 8q24.12 DEP domain containing 6 28558 rs4871827 DEPDC6 64798 8 121131060 NM_022783 NP_073620 A/G S389N plus 23976041 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 8q24.12 DEP domain containing 6 28559 rs4871827 DEPDC6 64798 8 121131060 NM_022783 NP_073620 A/G S389N plus 23976041 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.39 123 "by doubleHit,freq,cluster" 8q24.12 DEP domain containing 6 28560 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 6731796 1303 SEQUENOM CEPH CEPH (92) 92 0.18 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28561 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 12675180 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 188 0.42 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28562 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 12675180 775 SNP500CANCER CAUC1 Caucasian (31) 52 0.46 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28563 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 12675180 776 SNP500CANCER AFR1 African / African-American (24) 44 0.34 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28564 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 12675180 777 SNP500CANCER HISP1 Hispanic (23) 46 0.5 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28565 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 12675180 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28566 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 24491984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28567 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 24491984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28568 rs4871857 TNFRSF10A 8797 8 23115269 NM_003844 NP_003835 C/G R209T plus 24491984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 28569 rs4872318 CDCA2 157313 8 25420248 NM_152562 NP_689775 A/G V717I plus 24509025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 28570 rs4872318 CDCA2 157313 8 25420248 NM_152562 NP_689775 A/G V717I plus 24509025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 28571 rs4872318 CDCA2 157313 8 25420248 NM_152562 NP_689775 A/G V717I plus 24509025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 8p21.2 cell division cycle associated 2 28572 rs4874147 ZC3HDC3 23144 8 144691326 NM_015117 NP_055932 C/T S452G plus 6734706 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 28573 rs4874147 ZC3HDC3 23144 8 144691326 NM_015117 NP_055932 C/T S452G plus 24398124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 28574 rs4874147 ZC3HDC3 23144 8 144691326 NM_015117 NP_055932 C/T S452G plus 24398124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 28575 rs4874147 ZC3HDC3 23144 8 144691326 NM_015117 NP_055932 C/T S452G plus 24398124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 8q24.3 zinc finger CCCH type domain containing 3 28576 rs4878199 ALDH1B1 219 9 38386502 NM_000692 NP_000683 A/G V253M plus 6740188 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 28577 rs4878199 ALDH1B1 219 9 38386502 NM_000692 NP_000683 A/G V253M plus 24555214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 28578 rs4878199 ALDH1B1 219 9 38386502 NM_000692 NP_000683 A/G V253M plus 24555214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 28579 rs4878199 ALDH1B1 219 9 38386502 NM_000692 NP_000683 A/G V253M plus 24555214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 9p11.1 "aldehyde dehydrogenase 1 family, member B1" 28580 rs4883263 CD163 9332 12 7540751 NM_004244 NP_004235 C/T I342V plus 10712150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28581 rs4883263 CD163 9332 12 7540751 NM_004244 NP_004235 C/T I342V plus 23988269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28582 rs4883263 CD163 9332 12 7540751 NM_004244 NP_004235 C/T I342V plus 23988269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28583 rs4883263 CD163 9332 12 7540751 NM_004244 NP_004235 C/T I342V plus 23988269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28584 rs4883263 CD163 9332 12 7540751 NM_203416 NP_981961 C/T I342V plus 10712150 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28585 rs4883263 CD163 9332 12 7540751 NM_203416 NP_981961 C/T I342V plus 23988269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28586 rs4883263 CD163 9332 12 7540751 NM_203416 NP_981961 C/T I342V plus 23988269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28587 rs4883263 CD163 9332 12 7540751 NM_203416 NP_981961 C/T I342V plus 23988269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 12p13.3 CD163 antigen 28588 rs4884021 LMO7 4008 13 75295732 NM_005358 NP_005349 A/G V609I plus 12231043 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.16 121 "HapMap,doubleHit,freq,cluster" 13q21.33 LIM domain only 7 28589 rs4889261 PKD1L2 114780 16 79770879 NM_182740 NP_877417 A/G L711P plus 23518395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 28590 rs4889261 PKD1L2 114780 16 79770879 NM_182740 NP_877417 A/G L711P plus 23518395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 28591 rs4889261 PKD1L2 114780 16 79770879 NM_182740 NP_877417 A/G L711P plus 23518395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 28592 rs4891392 RTTN 25914 18 65869668 NM_173630 NP_775901 A/G F1761S plus 23526670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 28593 rs4891392 RTTN 25914 18 65869668 NM_173630 NP_775901 A/G F1761S plus 23526670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 28594 rs4891392 RTTN 25914 18 65869668 NM_173630 NP_775901 A/G F1761S plus 23526670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 18q22.2 rotatin 28595 rs4893853 TTN 7273 2 179458002 NM_133379 NP_596870 C/T K3154R plus 24644036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q31 titin 28596 rs4893853 TTN 7273 2 179458002 NM_133379 NP_596870 C/T K3154R plus 24644036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 2q31 titin 28597 rs4893853 TTN 7273 2 179458002 NM_133379 NP_596870 C/T K3154R plus 24644036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2q31 titin 28598 rs4895943 VNN3 55350 6 133094309 NM_078625 NP_523239 C/T C132Y plus 24477691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 3 28599 rs4895943 VNN3 55350 6 133094309 NM_078625 NP_523239 C/T C132Y plus 24477691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 3 28600 rs4895943 VNN3 55350 6 133094309 NM_078625 NP_523239 C/T C132Y plus 24477691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 6q23-q24 vanin 3 28601 rs4901284 TTC6 115669 14 37347750 XM_056434 XP_056434 C/T T140I plus 24605693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 14q13.3 tetratricopeptide repeat domain 6 28602 rs4901284 TTC6 115669 14 37347750 XM_056434 XP_056434 C/T T140I plus 24605693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq" 14q13.3 tetratricopeptide repeat domain 6 28603 rs4901284 TTC6 115669 14 37347750 XM_056434 XP_056434 C/T T140I plus 24605693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 14q13.3 tetratricopeptide repeat domain 6 28604 rs4902176 KCNH5 27133 14 62244713 NM_139318 NP_647479 C/T A745T plus 24616820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q23.1 "potassium voltage-gated channel, subfamily H (eag-related), member 5" 28605 rs4902176 KCNH5 27133 14 62244713 NM_139318 NP_647479 C/T A745T plus 24616820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 14q23.1 "potassium voltage-gated channel, subfamily H (eag-related), member 5" 28606 rs4902176 KCNH5 27133 14 62244713 NM_139318 NP_647479 C/T A745T plus 24616820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 14q23.1 "potassium voltage-gated channel, subfamily H (eag-related), member 5" 28607 rs4902264 SYNE2 23224 14 63561448 NM_015180 NP_055995 C/T M1968T plus 6774754 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 28608 rs4903104 PAPLN 89932 14 72805119 XM_370765 XP_370765 C/T T1436M plus 24606465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 28609 rs4903104 PAPLN 89932 14 72805119 XM_370765 XP_370765 C/T T1436M plus 24606465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 28610 rs4903104 PAPLN 89932 14 72805119 XM_370765 XP_370765 C/T T1436M plus 24606465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 28611 rs4904448 SPATA7 55812 14 87921919 NM_018418 NP_060888 A/G D2N plus 24599982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 28612 rs4904448 SPATA7 55812 14 87921919 NM_018418 NP_060888 A/G D2N plus 24599982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 28613 rs4904448 SPATA7 55812 14 87921919 NM_018418 NP_060888 A/G D2N plus 24599982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 28614 rs4905226 SERPINA13 388007 14 94177726 NM_207378 NP_997261 C/T L107F plus 24602508 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 28615 rs4905226 SERPINA13 388007 14 94177726 NM_207378 NP_997261 C/T L107F plus 24602508 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 28616 rs4905226 SERPINA13 388007 14 94177726 NM_207378 NP_997261 C/T L107F plus 24602508 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 28617 rs4909444 COL22A1 169044 8 139770391 NM_152888 NP_690848 G/T A938D plus 24353691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 28618 rs4909444 COL22A1 169044 8 139770391 NM_152888 NP_690848 G/T A938D plus 24353691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 28619 rs4909444 COL22A1 169044 8 139770391 NM_152888 NP_690848 G/T A938D plus 24353691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 8q24.3 "collagen, type XXII, alpha 1" 28620 rs4910755 OR51B6 390058 11 5329327 XM_372353 XP_372353 A/C K5T plus 23809878 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28621 rs4910755 OR51B6 390058 11 5329327 XM_372353 XP_372353 A/C K5T plus 23809878 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28622 rs4910755 OR51B6 390058 11 5329327 XM_372353 XP_372353 A/C K5T plus 23809878 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28623 rs4910756 OR51B6 390058 11 5329432 XM_372353 XP_372353 A/G N40S plus 6787160 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 123 "HapMap,doubleHit,freq" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28624 rs4910756 OR51B6 390058 11 5329432 XM_372353 XP_372353 A/G N40S plus 24717421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28625 rs4910756 OR51B6 390058 11 5329432 XM_372353 XP_372353 A/G N40S plus 24717421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28626 rs4910756 OR51B6 390058 11 5329432 XM_372353 XP_372353 A/G N40S plus 24717421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 28627 rs4915691 DNAJC6 9829 1 65579540 XM_375737 XP_375737 A/G S728N plus 6794588 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 121 "HapMap,doubleHit,freq,cluster" 1pter-q31.3 "DnaJ (Hsp40) homolog, subfamily C, member 6" 28628 rs4921637 SH2D4A 63898 8 19263046 NM_022071 NP_071354 A/G E216G plus 23711043 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 28629 rs4921637 SH2D4A 63898 8 19263046 NM_022071 NP_071354 A/G E216G plus 23711043 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 28630 rs4921637 SH2D4A 63898 8 19263046 NM_022071 NP_071354 A/G E216G plus 23711043 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 8p21.2 SH2 domain containing 4A 28631 rs4925663 OR2B11 127623 1 243940658 XM_060580 XP_060580 C/T G223D plus 6810154 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 123 "HapMap,doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily B, member 11" 28632 rs4925663 OR2B11 127623 1 243940658 XM_060580 XP_060580 C/T G223D plus 23870310 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily B, member 11" 28633 rs4925663 OR2B11 127623 1 243940658 XM_060580 XP_060580 C/T G223D plus 23870310 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily B, member 11" 28634 rs4925663 OR2B11 127623 1 243940658 XM_060580 XP_060580 C/T G223D plus 23870310 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily B, member 11" 28635 rs4925856 NFKBIL2 4796 8 145626711 NM_013432 NP_038460 A/G P1117L plus 6810421 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 "HapMap,doubleHit" 8q24.3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 28636 rs4926219 PKN1 5585 19 14441328 NM_002741 NP_002732 A/G I718V plus 6811114 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28637 rs4926219 PKN1 5585 19 14441328 NM_002741 NP_002732 A/G I718V plus 23537371 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28638 rs4926219 PKN1 5585 19 14441328 NM_002741 NP_002732 A/G I718V plus 23537371 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28639 rs4926219 PKN1 5585 19 14441328 NM_002741 NP_002732 A/G I718V plus 23537371 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28640 rs4926219 PKN1 5585 19 14441328 NM_213560 NP_998725 A/G I724V plus 6811114 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28641 rs4926219 PKN1 5585 19 14441328 NM_213560 NP_998725 A/G I724V plus 23537371 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28642 rs4926219 PKN1 5585 19 14441328 NM_213560 NP_998725 A/G I724V plus 23537371 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28643 rs4926219 PKN1 5585 19 14441328 NM_213560 NP_998725 A/G I724V plus 23537371 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 19p13.1-p12 protein kinase C-like 1 28644 rs4930388 SPTBN2 6712 11 66228850 NM_006946 NP_008877 C/T S825G plus 6817746 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 121 "HapMap,cluster" 11q13 "spectrin, beta, non-erythrocytic 2" 28645 rs4935502 PCDH15 65217 10 55625450 NM_033056 NP_149045 G/T D435A plus 23479696 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 28646 rs4935502 PCDH15 65217 10 55625450 NM_033056 NP_149045 G/T D435A plus 23479696 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 28647 rs4935502 PCDH15 65217 10 55625450 NM_033056 NP_149045 G/T D435A plus 23479696 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 28648 rs4936919 OR8D1 283159 11 123685292 XM_208543 XP_208543 A/G L194P plus 24123252 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 1" 28649 rs4936919 OR8D1 283159 11 123685292 XM_208543 XP_208543 A/G L194P plus 24123252 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 1" 28650 rs4936919 OR8D1 283159 11 123685292 XM_208543 XP_208543 A/G L194P plus 24123252 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 11q24.2 "olfactory receptor, family 8, subfamily D, member 1" 28651 rs4938016 ANKK1 255239 11 112775225 NM_178510 NP_848605 C/G G442R plus 24101853 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 28652 rs4938016 ANKK1 255239 11 112775225 NM_178510 NP_848605 C/G G442R plus 24101853 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 28653 rs4938016 ANKK1 255239 11 112775225 NM_178510 NP_848605 C/G G442R plus 24101853 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 28654 rs4940404 HAK 115701 18 54355651 NM_052947 NP_443179 A/T N679K plus 6833682 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 111 "HapMap,doubleHit,freq" 18q21.31-q21.32 heart alpha-kinase 28655 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 14896490 901 AFFY AfAm 12 0.33 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28656 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 14896490 902 AFFY Caucasian 24 0.33 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28657 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 14896490 903 AFFY Asian 12 0.33 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28658 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 14896490 904 AFFY CEPH 12 0.33 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28659 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 14896490 905 AFFY PDpanel 48 0.48 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28660 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 23500941 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28661 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 23500941 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28662 rs4940595 SERPINB11 89778 18 59530818 NM_080475 NP_536723 G/T *90E plus 23500941 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 28663 rs4941543 LCP1 3936 13 45606292 NM_002298 NP_002289 C/T K533E plus 24666681 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 13q14.3 lymphocyte cytosolic protein 1 (L-plastin) 28664 rs4941543 LCP1 3936 13 45606292 NM_002298 NP_002289 C/T K533E plus 24666681 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 13q14.3 lymphocyte cytosolic protein 1 (L-plastin) 28665 rs4941543 LCP1 3936 13 45606292 NM_002298 NP_002289 C/T K533E plus 24666681 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 13q14.3 lymphocyte cytosolic protein 1 (L-plastin) 28666 rs4942848 RCBTB1 55213 13 49039346 NM_018191 NP_060661 A/G A24V plus 24001656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 13q14 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 28667 rs4942848 RCBTB1 55213 13 49039346 NM_018191 NP_060661 A/G A24V plus 24001656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 13q14 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 28668 rs4942848 RCBTB1 55213 13 49039346 NM_018191 NP_060661 A/G A24V plus 24001656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 13q14 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 28669 rs4949184 SDC3 9672 1 31016492 XM_375712 XP_375712 C/T D527N plus 23683799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 1pter-p22.3 syndecan 3 (N-syndecan) 28670 rs4949184 SDC3 9672 1 31016492 XM_375712 XP_375712 C/T D527N plus 23683799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by cluster,freq" 1pter-p22.3 syndecan 3 (N-syndecan) 28671 rs4949184 SDC3 9672 1 31016492 XM_375712 XP_375712 C/T D527N plus 23683799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1pter-p22.3 syndecan 3 (N-syndecan) 28672 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 14883473 901 AFFY AfAm 8 1 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28673 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 14883473 902 AFFY Caucasian 24 0.08 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28674 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 14883473 903 AFFY Asian 12 1 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28675 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 14883473 904 AFFY CEPH 12 1 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28676 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 14883473 905 AFFY PDpanel 46 0.07 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28677 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 24236777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28678 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 24236777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28679 rs4950394 CHD1L 9557 1 143991965 NM_004284 NP_004275 G/T A885S plus 24236777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q12 chromodomain helicase DNA binding protein 1-like 28680 rs4954449 LCT 3938 2 136409266 NM_002299 NP_002290 C/T I362V plus 23216123 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,cluster" 2q21 lactase 28681 rs4954449 LCT 3938 2 136409266 NM_002299 NP_002290 C/T I362V plus 23216123 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,cluster" 2q21 lactase 28682 rs4954449 LCT 3938 2 136409266 NM_002299 NP_002290 C/T I362V plus 23216123 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,cluster" 2q21 lactase 28683 rs4956145 HADHSC 3033 4 109288643 NM_005327 NP_005318 C/T L86P plus 10158514 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by doubleHit,freq,cluster" 4q22-q26 "L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain" 28684 rs4956145 HADHSC 3033 4 109288643 NM_005327 NP_005318 C/T L86P plus 23719514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4q22-q26 "L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain" 28685 rs4956145 HADHSC 3033 4 109288643 NM_005327 NP_005318 C/T L86P plus 23719514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 4q22-q26 "L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain" 28686 rs4956145 HADHSC 3033 4 109288643 NM_005327 NP_005318 C/T L86P plus 23719514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4q22-q26 "L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain" 28687 rs4958531 NMUR2 56923 5 151752031 NM_020167 NP_064552 C/T M388V plus 24458014 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28688 rs4958531 NMUR2 56923 5 151752031 NM_020167 NP_064552 C/T M388V plus 24458014 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28689 rs4958531 NMUR2 56923 5 151752031 NM_020167 NP_064552 C/T M388V plus 24458014 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28690 rs4958535 NMUR2 56923 5 151755257 NM_020167 NP_064552 C/G S298T plus 24458129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28691 rs4958535 NMUR2 56923 5 151755257 NM_020167 NP_064552 C/G S298T plus 24458129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28692 rs4958535 NMUR2 56923 5 151755257 NM_020167 NP_064552 C/G S298T plus 24458129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 5q33.1 neuromedin U receptor 2 28693 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 10480071 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.37 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28694 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 14899156 901 AFFY AfAm 12 0.17 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28695 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 14899156 902 AFFY Caucasian 24 0.38 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28696 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 14899156 903 AFFY Asian 12 0.17 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28697 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 14899156 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28698 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 14899156 905 AFFY PDpanel 40 0.35 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28699 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 23480013 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28700 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 23480013 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28701 rs4961206 CNGB3 54714 8 87735367 NM_019098 NP_061971 G/T T298P plus 23480013 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 8q21-q22 cyclic nucleotide gated channel beta 3 28702 rs4962173 NTNG2 84628 9 132135518 NM_032536 NP_115925 A/G T346A plus 6867583 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 121 "HapMap,doubleHit,cluster" 9q34 netrin G2 28703 rs4968281 WNT9B 7484 17 42305121 NM_003396 NP_003387 C/T M106T plus 6876304 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.33 123 "HapMap,doubleHit,freq,cluster" 17q21 "wingless-type MMTV integration site family, member 9B" 28704 rs4968281 WNT9B 7484 17 42305121 NM_003396 NP_003387 C/T M106T plus 24110061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17q21 "wingless-type MMTV integration site family, member 9B" 28705 rs4968281 WNT9B 7484 17 42305121 NM_003396 NP_003387 C/T M106T plus 24110061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 17q21 "wingless-type MMTV integration site family, member 9B" 28706 rs4968281 WNT9B 7484 17 42305121 NM_003396 NP_003387 C/T M106T plus 24110061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 17q21 "wingless-type MMTV integration site family, member 9B" 28707 rs4968747 DKFZP564D166 26115 17 58397020 XM_371074 XP_371074 G/T V106F plus 6876962 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 119 "HapMap,doubleHit,freq,cluster" 17q24.1 putative ankyrin-repeat containing protein 28708 rs4968839 ABCA6 23460 17 64637435 NM_080284 NP_525023 C/T V282I plus 10852333 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.37 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28709 rs4968839 ABCA6 23460 17 64637435 NM_080284 NP_525023 C/T V282I plus 23634312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28710 rs4968839 ABCA6 23460 17 64637435 NM_080284 NP_525023 C/T V282I plus 23634312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28711 rs4968839 ABCA6 23460 17 64637435 NM_080284 NP_525023 C/T V282I plus 23634312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28712 rs4968839 ABCA6 23460 17 64637435 NM_172346 NP_758854 C/T V282I plus 10852333 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.37 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28713 rs4968839 ABCA6 23460 17 64637435 NM_172346 NP_758854 C/T V282I plus 23634312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28714 rs4968839 ABCA6 23460 17 64637435 NM_172346 NP_758854 C/T V282I plus 23634312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28715 rs4968839 ABCA6 23460 17 64637435 NM_172346 NP_758854 C/T V282I plus 23634312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 28716 rs4973588 NGEF 25791 2 233660480 NM_019850 NP_062824 A/G M111T plus 23871418 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 2q37 neuronal guanine nucleotide exchange factor 28717 rs4973588 NGEF 25791 2 233660480 NM_019850 NP_062824 A/G M111T plus 23871418 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 2q37 neuronal guanine nucleotide exchange factor 28718 rs4973588 NGEF 25791 2 233660480 NM_019850 NP_062824 A/G M111T plus 23871418 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 2q37 neuronal guanine nucleotide exchange factor 28719 rs4976482 TRPC7 57113 5 135595023 NM_020389 NP_065122 G/T Y653S plus 6888575 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 111 HapMap 5q31.2 "transient receptor potential cation channel, subfamily C, member 7" 28720 rs4980999 CAMKK2 10645 12 120153816 NM_006549 NP_006540 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28721 rs4980999 CAMKK2 10645 12 120153816 NM_006549 NP_006540 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28722 rs4980999 CAMKK2 10645 12 120153816 NM_006549 NP_006540 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28723 rs4980999 CAMKK2 10645 12 120153816 NM_006549 NP_006540 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28724 rs4980999 CAMKK2 10645 12 120153816 NM_153499 NP_705719 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28725 rs4980999 CAMKK2 10645 12 120153816 NM_153499 NP_705719 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28726 rs4980999 CAMKK2 10645 12 120153816 NM_153499 NP_705719 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28727 rs4980999 CAMKK2 10645 12 120153816 NM_153499 NP_705719 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28728 rs4980999 CAMKK2 10645 12 120153816 NM_153500 NP_705720 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28729 rs4980999 CAMKK2 10645 12 120153816 NM_153500 NP_705720 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28730 rs4980999 CAMKK2 10645 12 120153816 NM_153500 NP_705720 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28731 rs4980999 CAMKK2 10645 12 120153816 NM_153500 NP_705720 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28732 rs4980999 CAMKK2 10645 12 120153816 NM_172214 NP_757363 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28733 rs4980999 CAMKK2 10645 12 120153816 NM_172214 NP_757363 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28734 rs4980999 CAMKK2 10645 12 120153816 NM_172214 NP_757363 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28735 rs4980999 CAMKK2 10645 12 120153816 NM_172214 NP_757363 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28736 rs4980999 CAMKK2 10645 12 120153816 NM_172215 NP_757364 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28737 rs4980999 CAMKK2 10645 12 120153816 NM_172215 NP_757364 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28738 rs4980999 CAMKK2 10645 12 120153816 NM_172215 NP_757364 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28739 rs4980999 CAMKK2 10645 12 120153816 NM_172215 NP_757364 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28740 rs4980999 CAMKK2 10645 12 120153816 NM_172216 NP_757365 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28741 rs4980999 CAMKK2 10645 12 120153816 NM_172216 NP_757365 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28742 rs4980999 CAMKK2 10645 12 120153816 NM_172216 NP_757365 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28743 rs4980999 CAMKK2 10645 12 120153816 NM_172216 NP_757365 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28744 rs4980999 CAMKK2 10645 12 120153816 NM_172226 NP_757380 A/G R363C plus 19939643 1303 SEQUENOM CEPH CEPH (92) 92 0.1 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28745 rs4980999 CAMKK2 10645 12 120153816 NM_172226 NP_757380 A/G R363C plus 23933767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28746 rs4980999 CAMKK2 10645 12 120153816 NM_172226 NP_757380 A/G R363C plus 23933767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28747 rs4980999 CAMKK2 10645 12 120153816 NM_172226 NP_757380 A/G R363C plus 23933767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 12q24.2 "calcium/calmodulin-dependent protein kinase kinase 2, beta" 28748 rs4982419 OR5AU1 390445 14 20693676 XM_372509 XP_372509 A/G L117F plus 24226697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 28749 rs4982419 OR5AU1 390445 14 20693676 XM_372509 XP_372509 A/G L117F plus 24226697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 28750 rs4982419 OR5AU1 390445 14 20693676 XM_372509 XP_372509 A/G L117F plus 24226697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 28751 rs4985866 KCNJ12 3768 17 21259992 NM_021012 NP_066292 A/G I249V plus 23638448 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 28752 rs4985866 KCNJ12 3768 17 21259992 NM_021012 NP_066292 A/G I249V plus 23638448 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 28753 rs4985866 KCNJ12 3768 17 21259992 NM_021012 NP_066292 A/G I249V plus 23638448 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 17p11.1 "potassium inwardly-rectifying channel, subfamily J, member 12" 28754 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 5586263 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28755 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 5586263 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.02 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28756 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 5586263 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28757 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 5586263 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28758 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 5586263 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28759 rs4986761 ATM 472 11 107629971 NM_000051 NP_000042 C/T S707P plus 6904864 693 EGP_SNPS PDR90 NIHPDR 168 0.01 113 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 28760 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 5586323 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.34 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28761 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 5586323 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.37 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28762 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 5586323 776 SNP500CANCER AFR1 African / African-American (24) 48 0.42 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28763 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 5586323 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28764 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 5586323 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.33 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28765 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 6905478 844 STRUEWING CEPH_PARENT_1 116 0.4 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28766 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 24454918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28767 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 24454918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28768 rs4986764 BRIP1 83990 17 57118129 NM_032043 NP_114432 C/T S919P minus 24454918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 28769 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 5586997 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28770 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 5586997 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28771 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 5586997 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28772 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 5586997 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28773 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 5586997 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28774 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 6905451 844 STRUEWING CEPH_PARENT_1 120 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28775 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 24692813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28776 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 24692813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28777 rs4986771 ZNF350 59348 19 57160104 NM_021632 NP_067645 C/T S472P minus 24692813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 28778 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 6903885 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28779 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 6903885 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28780 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 6903885 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28781 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 6903885 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28782 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 6903885 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28783 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 24180120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28784 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 24180120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28785 rs4986783 NAT1 9 8 18124476 NM_000662 NP_000653 G/T S214A plus 24180120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 28786 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 5586939 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28787 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 5586939 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28788 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 5586939 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28789 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 5586939 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28790 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 5586939 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28791 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 16214287 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28792 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 16214287 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28793 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 16214287 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28794 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 23565642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28795 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 23565642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28796 rs4986790 TLR4 7099 9 117554856 NM_003266 NP_003257 A/G D259G plus 23565642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28797 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 5586939 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28798 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 5586939 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28799 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 5586939 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28800 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 5586939 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28801 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 5586939 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28802 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 16214287 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28803 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 16214287 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28804 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 16214287 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28805 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 23565642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28806 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 23565642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28807 rs4986790 TLR4 7099 9 117554856 NM_138554 NP_612564 A/G D299G plus 23565642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28808 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 5586939 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28809 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 5586939 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28810 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 5586939 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28811 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 5586939 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28812 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 5586939 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28813 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 16214287 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28814 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 16214287 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28815 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 16214287 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28816 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 23565642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28817 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 23565642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28818 rs4986790 TLR4 7099 9 117554856 NM_138556 NP_612566 A/G D242G plus 23565642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28819 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 5586939 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28820 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 5586939 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28821 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 5586939 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28822 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 5586939 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28823 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 5586939 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28824 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 16214287 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28825 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 16214287 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28826 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 16214287 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28827 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 23565642 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28828 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 23565642 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28829 rs4986790 TLR4 7099 9 117554856 NM_138557 NP_612567 A/G D99G plus 23565642 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q32-q33 toll-like receptor 4 28830 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 6903967 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28831 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 6903967 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28832 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 6903967 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28833 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 6903967 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28834 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 6903967 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28835 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 16214289 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28836 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 16214289 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28837 rs4986791 TLR4 7099 9 117555156 NM_003266 NP_003257 C/T T359I plus 16214289 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28838 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 6903967 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28839 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 6903967 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28840 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 6903967 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28841 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 6903967 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28842 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 6903967 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28843 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 16214289 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28844 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 16214289 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28845 rs4986791 TLR4 7099 9 117555156 NM_138554 NP_612564 C/T T399I plus 16214289 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28846 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 6903967 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28847 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 6903967 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28848 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 6903967 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28849 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 6903967 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28850 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 6903967 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28851 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 16214289 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28852 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 16214289 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28853 rs4986791 TLR4 7099 9 117555156 NM_138556 NP_612566 C/T T342I plus 16214289 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28854 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 6903967 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28855 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 6903967 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28856 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 6903967 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28857 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 6903967 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28858 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 6903967 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28859 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 16214289 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28860 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 16214289 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28861 rs4986791 TLR4 7099 9 117555156 NM_138557 NP_612567 C/T T199I plus 16214289 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 28862 rs4986818 ADPRTL1 143 13 23931231 NM_006437 NP_006428 C/T P792L minus 5586212 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28863 rs4986818 ADPRTL1 143 13 23931231 NM_006437 NP_006428 C/T P792L minus 5586212 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28864 rs4986818 ADPRTL1 143 13 23931231 NM_006437 NP_006428 C/T P792L minus 5586212 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28865 rs4986818 ADPRTL1 143 13 23931231 NM_006437 NP_006428 C/T P792L minus 5586212 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28866 rs4986818 ADPRTL1 143 13 23931231 NM_006437 NP_006428 C/T P792L minus 5586212 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28867 rs4986822 ADPRTL1 143 13 23907522 NM_006437 NP_006428 A/T S1253T minus 5586218 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28868 rs4986822 ADPRTL1 143 13 23907522 NM_006437 NP_006428 A/T S1253T minus 5586218 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28869 rs4986822 ADPRTL1 143 13 23907522 NM_006437 NP_006428 A/T S1253T minus 5586218 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28870 rs4986822 ADPRTL1 143 13 23907522 NM_006437 NP_006428 A/T S1253T minus 5586218 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28871 rs4986822 ADPRTL1 143 13 23907522 NM_006437 NP_006428 A/T S1253T minus 5586218 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 28872 rs4986826 AHR 196 7 17152397 NM_001621 NP_001612 A/G V570I plus 5586224 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 7p15 aryl hydrocarbon receptor 28873 rs4986826 AHR 196 7 17152397 NM_001621 NP_001612 A/G V570I plus 5586224 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 7p15 aryl hydrocarbon receptor 28874 rs4986826 AHR 196 7 17152397 NM_001621 NP_001612 A/G V570I plus 5586224 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 by freq 7p15 aryl hydrocarbon receptor 28875 rs4986826 AHR 196 7 17152397 NM_001621 NP_001612 A/G V570I plus 5586224 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 7p15 aryl hydrocarbon receptor 28876 rs4986826 AHR 196 7 17152397 NM_001621 NP_001612 A/G V570I plus 5586224 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 7p15 aryl hydrocarbon receptor 28877 rs4986845 BRCA1 672 17 38498907 NM_007294 NP_009225 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28878 rs4986845 BRCA1 672 17 38498907 NM_007294 NP_009225 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28879 rs4986845 BRCA1 672 17 38498907 NM_007294 NP_009225 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28880 rs4986845 BRCA1 672 17 38498907 NM_007294 NP_009225 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28881 rs4986845 BRCA1 672 17 38498907 NM_007294 NP_009225 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28882 rs4986845 BRCA1 672 17 38498907 NM_007295 NP_009226 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28883 rs4986845 BRCA1 672 17 38498907 NM_007295 NP_009226 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28884 rs4986845 BRCA1 672 17 38498907 NM_007295 NP_009226 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28885 rs4986845 BRCA1 672 17 38498907 NM_007295 NP_009226 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28886 rs4986845 BRCA1 672 17 38498907 NM_007295 NP_009226 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28887 rs4986845 BRCA1 672 17 38498907 NM_007296 NP_009227 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28888 rs4986845 BRCA1 672 17 38498907 NM_007296 NP_009227 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28889 rs4986845 BRCA1 672 17 38498907 NM_007296 NP_009227 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28890 rs4986845 BRCA1 672 17 38498907 NM_007296 NP_009227 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28891 rs4986845 BRCA1 672 17 38498907 NM_007296 NP_009227 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28892 rs4986845 BRCA1 672 17 38498907 NM_007297 NP_009228 A/G N427D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28893 rs4986845 BRCA1 672 17 38498907 NM_007297 NP_009228 A/G N427D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28894 rs4986845 BRCA1 672 17 38498907 NM_007297 NP_009228 A/G N427D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28895 rs4986845 BRCA1 672 17 38498907 NM_007297 NP_009228 A/G N427D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28896 rs4986845 BRCA1 672 17 38498907 NM_007297 NP_009228 A/G N427D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28897 rs4986845 BRCA1 672 17 38498907 NM_007299 NP_009230 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28898 rs4986845 BRCA1 672 17 38498907 NM_007299 NP_009230 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28899 rs4986845 BRCA1 672 17 38498907 NM_007299 NP_009230 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28900 rs4986845 BRCA1 672 17 38498907 NM_007299 NP_009230 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28901 rs4986845 BRCA1 672 17 38498907 NM_007299 NP_009230 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28902 rs4986845 BRCA1 672 17 38498907 NM_007300 NP_009231 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28903 rs4986845 BRCA1 672 17 38498907 NM_007300 NP_009231 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28904 rs4986845 BRCA1 672 17 38498907 NM_007300 NP_009231 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28905 rs4986845 BRCA1 672 17 38498907 NM_007300 NP_009231 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28906 rs4986845 BRCA1 672 17 38498907 NM_007300 NP_009231 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28907 rs4986845 BRCA1 672 17 38498907 NM_007301 NP_009232 A/G N723D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28908 rs4986845 BRCA1 672 17 38498907 NM_007301 NP_009232 A/G N723D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28909 rs4986845 BRCA1 672 17 38498907 NM_007301 NP_009232 A/G N723D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28910 rs4986845 BRCA1 672 17 38498907 NM_007301 NP_009232 A/G N723D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28911 rs4986845 BRCA1 672 17 38498907 NM_007301 NP_009232 A/G N723D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28912 rs4986845 BRCA1 672 17 38498907 NM_007302 NP_009233 A/G N682D minus 5586291 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28913 rs4986845 BRCA1 672 17 38498907 NM_007302 NP_009233 A/G N682D minus 5586291 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28914 rs4986845 BRCA1 672 17 38498907 NM_007302 NP_009233 A/G N682D minus 5586291 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28915 rs4986845 BRCA1 672 17 38498907 NM_007302 NP_009233 A/G N682D minus 5586291 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28916 rs4986845 BRCA1 672 17 38498907 NM_007302 NP_009233 A/G N682D minus 5586291 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28917 rs4986849 BRCA1 672 17 38487976 NM_007294 NP_009225 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28918 rs4986849 BRCA1 672 17 38487976 NM_007294 NP_009225 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28919 rs4986849 BRCA1 672 17 38487976 NM_007294 NP_009225 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28920 rs4986849 BRCA1 672 17 38487976 NM_007294 NP_009225 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28921 rs4986849 BRCA1 672 17 38487976 NM_007294 NP_009225 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28922 rs4986849 BRCA1 672 17 38487976 NM_007295 NP_009226 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28923 rs4986849 BRCA1 672 17 38487976 NM_007295 NP_009226 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28924 rs4986849 BRCA1 672 17 38487976 NM_007295 NP_009226 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28925 rs4986849 BRCA1 672 17 38487976 NM_007295 NP_009226 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28926 rs4986849 BRCA1 672 17 38487976 NM_007295 NP_009226 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28927 rs4986849 BRCA1 672 17 38487976 NM_007296 NP_009227 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28928 rs4986849 BRCA1 672 17 38487976 NM_007296 NP_009227 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28929 rs4986849 BRCA1 672 17 38487976 NM_007296 NP_009227 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28930 rs4986849 BRCA1 672 17 38487976 NM_007296 NP_009227 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28931 rs4986849 BRCA1 672 17 38487976 NM_007296 NP_009227 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28932 rs4986849 BRCA1 672 17 38487976 NM_007297 NP_009228 A/G R1147Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28933 rs4986849 BRCA1 672 17 38487976 NM_007297 NP_009228 A/G R1147Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28934 rs4986849 BRCA1 672 17 38487976 NM_007297 NP_009228 A/G R1147Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28935 rs4986849 BRCA1 672 17 38487976 NM_007297 NP_009228 A/G R1147Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28936 rs4986849 BRCA1 672 17 38487976 NM_007297 NP_009228 A/G R1147Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28937 rs4986849 BRCA1 672 17 38487976 NM_007298 NP_009229 A/G R260Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28938 rs4986849 BRCA1 672 17 38487976 NM_007298 NP_009229 A/G R260Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28939 rs4986849 BRCA1 672 17 38487976 NM_007298 NP_009229 A/G R260Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28940 rs4986849 BRCA1 672 17 38487976 NM_007298 NP_009229 A/G R260Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28941 rs4986849 BRCA1 672 17 38487976 NM_007298 NP_009229 A/G R260Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28942 rs4986849 BRCA1 672 17 38487976 NM_007299 NP_009230 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28943 rs4986849 BRCA1 672 17 38487976 NM_007299 NP_009230 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28944 rs4986849 BRCA1 672 17 38487976 NM_007299 NP_009230 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28945 rs4986849 BRCA1 672 17 38487976 NM_007299 NP_009230 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28946 rs4986849 BRCA1 672 17 38487976 NM_007299 NP_009230 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28947 rs4986849 BRCA1 672 17 38487976 NM_007300 NP_009231 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28948 rs4986849 BRCA1 672 17 38487976 NM_007300 NP_009231 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28949 rs4986849 BRCA1 672 17 38487976 NM_007300 NP_009231 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28950 rs4986849 BRCA1 672 17 38487976 NM_007300 NP_009231 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28951 rs4986849 BRCA1 672 17 38487976 NM_007300 NP_009231 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28952 rs4986849 BRCA1 672 17 38487976 NM_007301 NP_009232 A/G R1443Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28953 rs4986849 BRCA1 672 17 38487976 NM_007301 NP_009232 A/G R1443Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28954 rs4986849 BRCA1 672 17 38487976 NM_007301 NP_009232 A/G R1443Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28955 rs4986849 BRCA1 672 17 38487976 NM_007301 NP_009232 A/G R1443Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28956 rs4986849 BRCA1 672 17 38487976 NM_007301 NP_009232 A/G R1443Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28957 rs4986849 BRCA1 672 17 38487976 NM_007302 NP_009233 A/G R1402Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28958 rs4986849 BRCA1 672 17 38487976 NM_007302 NP_009233 A/G R1402Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28959 rs4986849 BRCA1 672 17 38487976 NM_007302 NP_009233 A/G R1402Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28960 rs4986849 BRCA1 672 17 38487976 NM_007302 NP_009233 A/G R1402Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28961 rs4986849 BRCA1 672 17 38487976 NM_007302 NP_009233 A/G R1402Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28962 rs4986849 BRCA1 672 17 38487976 NM_007303 NP_009234 A/G R301Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28963 rs4986849 BRCA1 672 17 38487976 NM_007303 NP_009234 A/G R301Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28964 rs4986849 BRCA1 672 17 38487976 NM_007303 NP_009234 A/G R301Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28965 rs4986849 BRCA1 672 17 38487976 NM_007303 NP_009234 A/G R301Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28966 rs4986849 BRCA1 672 17 38487976 NM_007303 NP_009234 A/G R301Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28967 rs4986849 BRCA1 672 17 38487976 NM_007304 NP_009235 A/G R340Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28968 rs4986849 BRCA1 672 17 38487976 NM_007304 NP_009235 A/G R340Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28969 rs4986849 BRCA1 672 17 38487976 NM_007304 NP_009235 A/G R340Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28970 rs4986849 BRCA1 672 17 38487976 NM_007304 NP_009235 A/G R340Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28971 rs4986849 BRCA1 672 17 38487976 NM_007304 NP_009235 A/G R340Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28972 rs4986849 BRCA1 672 17 38487976 NM_007305 NP_009236 A/G R299Q minus 5586295 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 17q21 "breast cancer 1, early onset" 28973 rs4986849 BRCA1 672 17 38487976 NM_007305 NP_009236 A/G R299Q minus 5586295 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 17q21 "breast cancer 1, early onset" 28974 rs4986849 BRCA1 672 17 38487976 NM_007305 NP_009236 A/G R299Q minus 5586295 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 17q21 "breast cancer 1, early onset" 28975 rs4986849 BRCA1 672 17 38487976 NM_007305 NP_009236 A/G R299Q minus 5586295 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 17q21 "breast cancer 1, early onset" 28976 rs4986849 BRCA1 672 17 38487976 NM_007305 NP_009236 A/G R299Q minus 5586295 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 28977 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28978 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28979 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28980 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28981 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28982 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28983 rs4986850 BRCA1 672 17 38498997 NM_007294 NP_009225 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28984 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28985 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28986 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28987 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28988 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28989 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28990 rs4986850 BRCA1 672 17 38498997 NM_007295 NP_009226 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28991 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28992 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28993 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28994 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28995 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28996 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28997 rs4986850 BRCA1 672 17 38498997 NM_007296 NP_009227 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28998 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 28999 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29000 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29001 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29002 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29003 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29004 rs4986850 BRCA1 672 17 38498997 NM_007297 NP_009228 A/G D397N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29005 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29006 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29007 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29008 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29009 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29010 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29011 rs4986850 BRCA1 672 17 38498997 NM_007299 NP_009230 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29012 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29013 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29014 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29015 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29016 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29017 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29018 rs4986850 BRCA1 672 17 38498997 NM_007300 NP_009231 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29019 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29020 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29021 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29022 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29023 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29024 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29025 rs4986850 BRCA1 672 17 38498997 NM_007301 NP_009232 A/G D693N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29026 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 5586297 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.03 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29027 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 5586297 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29028 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 5586297 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29029 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 5586297 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29030 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 5586297 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29031 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 8486255 693 EGP_SNPS PDR90 NIHPDR 160 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29032 rs4986850 BRCA1 672 17 38498997 NM_007302 NP_009233 A/G D652N minus 8486255 1303 SEQUENOM CEPH CEPH (92) 92 0.17 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29033 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29034 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29035 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29036 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29037 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29038 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29039 rs4986852 BRCA1 672 17 38497955 NM_007294 NP_009225 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29040 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29041 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29042 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29043 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29044 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29045 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29046 rs4986852 BRCA1 672 17 38497955 NM_007295 NP_009226 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29047 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29048 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29049 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29050 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29051 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29052 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29053 rs4986852 BRCA1 672 17 38497955 NM_007296 NP_009227 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29054 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29055 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29056 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29057 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29058 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29059 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29060 rs4986852 BRCA1 672 17 38497955 NM_007297 NP_009228 A/G S744N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29061 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29062 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29063 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29064 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29065 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29066 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29067 rs4986852 BRCA1 672 17 38497955 NM_007299 NP_009230 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29068 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29069 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29070 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29071 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29072 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29073 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29074 rs4986852 BRCA1 672 17 38497955 NM_007300 NP_009231 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29075 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29076 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29077 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29078 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29079 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29080 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29081 rs4986852 BRCA1 672 17 38497955 NM_007301 NP_009232 A/G S1040N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29082 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 5586300 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29083 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 5586300 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29084 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 5586300 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29085 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 5586300 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29086 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 5586300 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29087 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 8486260 693 EGP_SNPS PDR90 NIHPDR 174 0.01 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29088 rs4986852 BRCA1 672 17 38497955 NM_007302 NP_009233 A/G S999N minus 8486260 1303 SEQUENOM CEPH CEPH (92) 92 1 117 "by cluster,freq" 17q21 "breast cancer 1, early onset" 29089 rs4986854 BRCA1 672 17 38476574 NM_007294 NP_009225 C/T M1628T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29090 rs4986854 BRCA1 672 17 38476574 NM_007294 NP_009225 C/T M1628T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29091 rs4986854 BRCA1 672 17 38476574 NM_007294 NP_009225 C/T M1628T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29092 rs4986854 BRCA1 672 17 38476574 NM_007294 NP_009225 C/T M1628T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29093 rs4986854 BRCA1 672 17 38476574 NM_007294 NP_009225 C/T M1628T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29094 rs4986854 BRCA1 672 17 38476574 NM_007295 NP_009226 C/T M1628T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29095 rs4986854 BRCA1 672 17 38476574 NM_007295 NP_009226 C/T M1628T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29096 rs4986854 BRCA1 672 17 38476574 NM_007295 NP_009226 C/T M1628T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29097 rs4986854 BRCA1 672 17 38476574 NM_007295 NP_009226 C/T M1628T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29098 rs4986854 BRCA1 672 17 38476574 NM_007295 NP_009226 C/T M1628T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29099 rs4986854 BRCA1 672 17 38476574 NM_007296 NP_009227 C/T M1628T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29100 rs4986854 BRCA1 672 17 38476574 NM_007296 NP_009227 C/T M1628T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29101 rs4986854 BRCA1 672 17 38476574 NM_007296 NP_009227 C/T M1628T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29102 rs4986854 BRCA1 672 17 38476574 NM_007296 NP_009227 C/T M1628T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29103 rs4986854 BRCA1 672 17 38476574 NM_007296 NP_009227 C/T M1628T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29104 rs4986854 BRCA1 672 17 38476574 NM_007297 NP_009228 C/T M1332T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29105 rs4986854 BRCA1 672 17 38476574 NM_007297 NP_009228 C/T M1332T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29106 rs4986854 BRCA1 672 17 38476574 NM_007297 NP_009228 C/T M1332T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29107 rs4986854 BRCA1 672 17 38476574 NM_007297 NP_009228 C/T M1332T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29108 rs4986854 BRCA1 672 17 38476574 NM_007297 NP_009228 C/T M1332T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29109 rs4986854 BRCA1 672 17 38476574 NM_007298 NP_009229 C/T M445T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29110 rs4986854 BRCA1 672 17 38476574 NM_007298 NP_009229 C/T M445T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29111 rs4986854 BRCA1 672 17 38476574 NM_007298 NP_009229 C/T M445T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29112 rs4986854 BRCA1 672 17 38476574 NM_007298 NP_009229 C/T M445T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29113 rs4986854 BRCA1 672 17 38476574 NM_007298 NP_009229 C/T M445T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29114 rs4986854 BRCA1 672 17 38476574 NM_007302 NP_009233 C/T M1587T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29115 rs4986854 BRCA1 672 17 38476574 NM_007302 NP_009233 C/T M1587T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29116 rs4986854 BRCA1 672 17 38476574 NM_007302 NP_009233 C/T M1587T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29117 rs4986854 BRCA1 672 17 38476574 NM_007302 NP_009233 C/T M1587T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29118 rs4986854 BRCA1 672 17 38476574 NM_007302 NP_009233 C/T M1587T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29119 rs4986854 BRCA1 672 17 38476574 NM_007303 NP_009234 C/T M486T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29120 rs4986854 BRCA1 672 17 38476574 NM_007303 NP_009234 C/T M486T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29121 rs4986854 BRCA1 672 17 38476574 NM_007303 NP_009234 C/T M486T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29122 rs4986854 BRCA1 672 17 38476574 NM_007303 NP_009234 C/T M486T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29123 rs4986854 BRCA1 672 17 38476574 NM_007303 NP_009234 C/T M486T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29124 rs4986854 BRCA1 672 17 38476574 NM_007304 NP_009235 C/T M524T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29125 rs4986854 BRCA1 672 17 38476574 NM_007304 NP_009235 C/T M524T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29126 rs4986854 BRCA1 672 17 38476574 NM_007304 NP_009235 C/T M524T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29127 rs4986854 BRCA1 672 17 38476574 NM_007304 NP_009235 C/T M524T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29128 rs4986854 BRCA1 672 17 38476574 NM_007304 NP_009235 C/T M524T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29129 rs4986854 BRCA1 672 17 38476574 NM_007305 NP_009236 C/T M484T minus 5586304 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17q21 "breast cancer 1, early onset" 29130 rs4986854 BRCA1 672 17 38476574 NM_007305 NP_009236 C/T M484T minus 5586304 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17q21 "breast cancer 1, early onset" 29131 rs4986854 BRCA1 672 17 38476574 NM_007305 NP_009236 C/T M484T minus 5586304 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 17q21 "breast cancer 1, early onset" 29132 rs4986854 BRCA1 672 17 38476574 NM_007305 NP_009236 C/T M484T minus 5586304 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17q21 "breast cancer 1, early onset" 29133 rs4986854 BRCA1 672 17 38476574 NM_007305 NP_009236 C/T M484T minus 5586304 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 17q21 "breast cancer 1, early onset" 29134 rs4986859 BRCA2 675 13 31827329 NM_000059 NP_000050 A/G N2447D plus 5586318 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 by freq 13q12.3 "breast cancer 2, early onset" 29135 rs4986859 BRCA2 675 13 31827329 NM_000059 NP_000050 A/G N2447D plus 5586318 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29136 rs4986859 BRCA2 675 13 31827329 NM_000059 NP_000050 A/G N2447D plus 5586318 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q12.3 "breast cancer 2, early onset" 29137 rs4986859 BRCA2 675 13 31827329 NM_000059 NP_000050 A/G N2447D plus 5586318 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29138 rs4986859 BRCA2 675 13 31827329 NM_000059 NP_000050 A/G N2447D plus 5586318 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29139 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 5586319 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29140 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 5586319 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29141 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 5586319 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29142 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 5586319 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29143 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 5586319 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29144 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 16355877 693 EGP_SNPS PDR90 NIHPDR 154 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29145 rs4986860 BRCA2 675 13 31827309 NM_000059 NP_000050 A/G H2440R plus 16355877 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29146 rs4986866 CDKN1A 1026 6 36759867 NM_000389 NP_000380 C/T P4L plus 5586346 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29147 rs4986866 CDKN1A 1026 6 36759867 NM_000389 NP_000380 C/T P4L plus 5586346 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29148 rs4986866 CDKN1A 1026 6 36759867 NM_000389 NP_000380 C/T P4L plus 5586346 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29149 rs4986866 CDKN1A 1026 6 36759867 NM_000389 NP_000380 C/T P4L plus 5586346 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29150 rs4986866 CDKN1A 1026 6 36759867 NM_000389 NP_000380 C/T P4L plus 5586346 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29151 rs4986866 CDKN1A 1026 6 36759867 NM_078467 NP_510867 C/T P4L plus 5586346 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29152 rs4986866 CDKN1A 1026 6 36759867 NM_078467 NP_510867 C/T P4L plus 5586346 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29153 rs4986866 CDKN1A 1026 6 36759867 NM_078467 NP_510867 C/T P4L plus 5586346 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29154 rs4986866 CDKN1A 1026 6 36759867 NM_078467 NP_510867 C/T P4L plus 5586346 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29155 rs4986866 CDKN1A 1026 6 36759867 NM_078467 NP_510867 C/T P4L plus 5586346 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29156 rs4986867 CDKN1A 1026 6 36760045 NM_000389 NP_000380 A/C F63L plus 5586348 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29157 rs4986867 CDKN1A 1026 6 36760045 NM_000389 NP_000380 A/C F63L plus 5586348 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29158 rs4986867 CDKN1A 1026 6 36760045 NM_000389 NP_000380 A/C F63L plus 5586348 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29159 rs4986867 CDKN1A 1026 6 36760045 NM_000389 NP_000380 A/C F63L plus 5586348 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29160 rs4986867 CDKN1A 1026 6 36760045 NM_000389 NP_000380 A/C F63L plus 5586348 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29161 rs4986867 CDKN1A 1026 6 36760045 NM_078467 NP_510867 A/C F63L plus 5586348 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29162 rs4986867 CDKN1A 1026 6 36760045 NM_078467 NP_510867 A/C F63L plus 5586348 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29163 rs4986867 CDKN1A 1026 6 36760045 NM_078467 NP_510867 A/C F63L plus 5586348 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29164 rs4986867 CDKN1A 1026 6 36760045 NM_078467 NP_510867 A/C F63L plus 5586348 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29165 rs4986867 CDKN1A 1026 6 36760045 NM_078467 NP_510867 A/C F63L plus 5586348 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 6p21.2 "cyclin-dependent kinase inhibitor 1A (p21, Cip1)" 29166 rs4986871 COMT 1312 22 18325790 NM_000754 NP_000745 C/T A146V plus 5586360 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 113 by freq 22q11.21 catechol-O-methyltransferase 29167 rs4986871 COMT 1312 22 18325790 NM_000754 NP_000745 C/T A146V plus 5586360 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 22q11.21 catechol-O-methyltransferase 29168 rs4986871 COMT 1312 22 18325790 NM_000754 NP_000745 C/T A146V plus 5586360 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 by freq 22q11.21 catechol-O-methyltransferase 29169 rs4986871 COMT 1312 22 18325790 NM_000754 NP_000745 C/T A146V plus 5586360 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 22q11.21 catechol-O-methyltransferase 29170 rs4986871 COMT 1312 22 18325790 NM_000754 NP_000745 C/T A146V plus 5586360 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 22q11.21 catechol-O-methyltransferase 29171 rs4986871 COMT 1312 22 18325790 NM_007310 NP_009294 C/T A96V plus 5586360 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 113 by freq 22q11.21 catechol-O-methyltransferase 29172 rs4986871 COMT 1312 22 18325790 NM_007310 NP_009294 C/T A96V plus 5586360 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 22q11.21 catechol-O-methyltransferase 29173 rs4986871 COMT 1312 22 18325790 NM_007310 NP_009294 C/T A96V plus 5586360 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 by freq 22q11.21 catechol-O-methyltransferase 29174 rs4986871 COMT 1312 22 18325790 NM_007310 NP_009294 C/T A96V plus 5586360 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 22q11.21 catechol-O-methyltransferase 29175 rs4986871 COMT 1312 22 18325790 NM_007310 NP_009294 C/T A96V plus 5586360 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 22q11.21 catechol-O-methyltransferase 29176 rs4986887 CYP1B1 1545 2 38209827 NM_000104 NP_000095 C/G D441H minus 5586409 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29177 rs4986887 CYP1B1 1545 2 38209827 NM_000104 NP_000095 C/G D441H minus 5586409 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29178 rs4986887 CYP1B1 1545 2 38209827 NM_000104 NP_000095 C/G D441H minus 5586409 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29179 rs4986887 CYP1B1 1545 2 38209827 NM_000104 NP_000095 C/G D441H minus 5586409 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29180 rs4986887 CYP1B1 1545 2 38209827 NM_000104 NP_000095 C/G D441H minus 5586409 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29181 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 5586410 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29182 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 5586410 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29183 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 5586410 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29184 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 5586410 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29185 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 5586410 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29186 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 23698972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29187 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 23698972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29188 rs4986888 CYP1B1 1545 2 38209820 NM_000104 NP_000095 C/G A443G minus 23698972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 29189 rs4986891 CYP2A6 1548 19 46046469 NM_000762 NP_000753 A/G R128Q minus 5586413 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29190 rs4986891 CYP2A6 1548 19 46046469 NM_000762 NP_000753 A/G R128Q minus 5586413 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29191 rs4986891 CYP2A6 1548 19 46046469 NM_000762 NP_000753 A/G R128Q minus 5586413 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29192 rs4986891 CYP2A6 1548 19 46046469 NM_000762 NP_000753 A/G R128Q minus 5586413 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29193 rs4986891 CYP2A6 1548 19 46046469 NM_000762 NP_000753 A/G R128Q minus 5586413 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29194 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 5586455 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29195 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 5586455 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29196 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 5586455 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29197 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 5586455 777 SNP500CANCER HISP1 Hispanic (23) 46 1 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29198 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 5586455 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29199 rs4986907 CYP3A4 1576 7 99012078 NM_017460 NP_059488 A/G R162Q minus 20421467 1241 PHARMGKB_PAAR-SJCRH PA130249474 360 0.01 121 "by cluster,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29200 rs4986909 CYP3A4 1576 7 99004321 NM_017460 NP_059488 C/T P416L minus 5586458 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29201 rs4986909 CYP3A4 1576 7 99004321 NM_017460 NP_059488 C/T P416L minus 5586458 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29202 rs4986909 CYP3A4 1576 7 99004321 NM_017460 NP_059488 C/T P416L minus 5586458 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29203 rs4986909 CYP3A4 1576 7 99004321 NM_017460 NP_059488 C/T P416L minus 5586458 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29204 rs4986909 CYP3A4 1576 7 99004321 NM_017460 NP_059488 C/T P416L minus 5586458 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29205 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29206 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29207 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29208 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29209 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29210 rs4986910 CYP3A4 1576 7 99003175 NM_017460 NP_059488 C/T M445T minus 5586459 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 "HapMap,freq" 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29211 rs4986931 EPHX1 2052 1 222326321 NM_000120 NP_000111 A/G W97X plus 5586498 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 29212 rs4986931 EPHX1 2052 1 222326321 NM_000120 NP_000111 A/G W97X plus 5586498 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 29213 rs4986931 EPHX1 2052 1 222326321 NM_000120 NP_000111 A/G W97X plus 5586498 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 29214 rs4986931 EPHX1 2052 1 222326321 NM_000120 NP_000111 A/G W97X plus 5586498 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 29215 rs4986931 EPHX1 2052 1 222326321 NM_000120 NP_000111 A/G W97X plus 5586498 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 113 by freq 1q42.1 "epoxide hydrolase 1, microsomal (xenobiotic)" 29216 rs4986933 ERCC4 2072 16 13949533 NM_005236 NP_005227 A/C A860D plus 5586517 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 29217 rs4986933 ERCC4 2072 16 13949533 NM_005236 NP_005227 A/C A860D plus 5586517 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 29218 rs4986933 ERCC4 2072 16 13949533 NM_005236 NP_005227 A/C A860D plus 5586517 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 29219 rs4986933 ERCC4 2072 16 13949533 NM_005236 NP_005227 A/C A860D plus 5586517 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 29220 rs4986933 ERCC4 2072 16 13949533 NM_005236 NP_005227 A/C A860D plus 5586517 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 16p13.3-p13.11 "excision repair cross-complementing rodent repair deficiency, complementation group 4" 29221 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.03 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29222 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29223 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 776 SNP500CANCER AFR1 African / African-American (24) 48 0.1 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29224 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29225 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29226 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29227 rs4986939 FANCG 2189 9 35065969 NM_004629 NP_004620 A/G S378L plus 5586534 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq" 9p13 "Fanconi anemia, complementation group G" 29228 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 5586535 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29229 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 5586535 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29230 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 5586535 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29231 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 5586535 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29232 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 5586535 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29233 rs4986940 FANCG 2189 9 35066517 NM_004629 NP_004620 C/T P330S minus 10521195 1303 SEQUENOM CEPH CEPH (92) 92 1 116 "by doubleHit,freq,cluster" 9p13 "Fanconi anemia, complementation group G" 29234 rs4986941 FCGR2A 2212 1 158292718 NM_021642 NP_067674 A/G M138V plus 5586538 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 29235 rs4986941 FCGR2A 2212 1 158292718 NM_021642 NP_067674 A/G M138V plus 5586538 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 29236 rs4986941 FCGR2A 2212 1 158292718 NM_021642 NP_067674 A/G M138V plus 5586538 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 29237 rs4986941 FCGR2A 2212 1 158292718 NM_021642 NP_067674 A/G M138V plus 5586538 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 29238 rs4986941 FCGR2A 2212 1 158292718 NM_021642 NP_067674 A/G M138V plus 5586538 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 1q23 "Fc fragment of IgG, low affinity IIa, receptor for (CD32)" 29239 rs4986948 GSTP1 2950 11 67109281 NM_000852 NP_000843 C/G T110S plus 5586575 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 11q13 glutathione S-transferase pi 29240 rs4986948 GSTP1 2950 11 67109281 NM_000852 NP_000843 C/G T110S plus 5586575 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 11q13 glutathione S-transferase pi 29241 rs4986948 GSTP1 2950 11 67109281 NM_000852 NP_000843 C/G T110S plus 5586575 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 11q13 glutathione S-transferase pi 29242 rs4986948 GSTP1 2950 11 67109281 NM_000852 NP_000843 C/G T110S plus 5586575 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 11q13 glutathione S-transferase pi 29243 rs4986948 GSTP1 2950 11 67109281 NM_000852 NP_000843 C/G T110S plus 5586575 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 11q13 glutathione S-transferase pi 29244 rs4986950 HFE 3077 6 26200925 NM_000410 NP_000401 C/T T217I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29245 rs4986950 HFE 3077 6 26200925 NM_000410 NP_000401 C/T T217I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29246 rs4986950 HFE 3077 6 26200925 NM_000410 NP_000401 C/T T217I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29247 rs4986950 HFE 3077 6 26200925 NM_000410 NP_000401 C/T T217I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29248 rs4986950 HFE 3077 6 26200925 NM_000410 NP_000401 C/T T217I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29249 rs4986950 HFE 3077 6 26200925 NM_139004 NP_620573 C/T T125I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29250 rs4986950 HFE 3077 6 26200925 NM_139004 NP_620573 C/T T125I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29251 rs4986950 HFE 3077 6 26200925 NM_139004 NP_620573 C/T T125I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29252 rs4986950 HFE 3077 6 26200925 NM_139004 NP_620573 C/T T125I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29253 rs4986950 HFE 3077 6 26200925 NM_139004 NP_620573 C/T T125I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29254 rs4986950 HFE 3077 6 26200925 NM_139005 NP_620574 C/T T217I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29255 rs4986950 HFE 3077 6 26200925 NM_139005 NP_620574 C/T T217I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29256 rs4986950 HFE 3077 6 26200925 NM_139005 NP_620574 C/T T217I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29257 rs4986950 HFE 3077 6 26200925 NM_139005 NP_620574 C/T T217I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29258 rs4986950 HFE 3077 6 26200925 NM_139005 NP_620574 C/T T217I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29259 rs4986950 HFE 3077 6 26200925 NM_139007 NP_620576 C/T T129I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29260 rs4986950 HFE 3077 6 26200925 NM_139007 NP_620576 C/T T129I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29261 rs4986950 HFE 3077 6 26200925 NM_139007 NP_620576 C/T T129I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29262 rs4986950 HFE 3077 6 26200925 NM_139007 NP_620576 C/T T129I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29263 rs4986950 HFE 3077 6 26200925 NM_139007 NP_620576 C/T T129I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29264 rs4986950 HFE 3077 6 26200925 NM_139009 NP_620578 C/T T194I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29265 rs4986950 HFE 3077 6 26200925 NM_139009 NP_620578 C/T T194I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29266 rs4986950 HFE 3077 6 26200925 NM_139009 NP_620578 C/T T194I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29267 rs4986950 HFE 3077 6 26200925 NM_139009 NP_620578 C/T T194I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29268 rs4986950 HFE 3077 6 26200925 NM_139009 NP_620578 C/T T194I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29269 rs4986950 HFE 3077 6 26200925 NM_139010 NP_620579 C/T T37I plus 5586583 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6p21.3 hemochromatosis 29270 rs4986950 HFE 3077 6 26200925 NM_139010 NP_620579 C/T T37I plus 5586583 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 6p21.3 hemochromatosis 29271 rs4986950 HFE 3077 6 26200925 NM_139010 NP_620579 C/T T37I plus 5586583 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 6p21.3 hemochromatosis 29272 rs4986950 HFE 3077 6 26200925 NM_139010 NP_620579 C/T T37I plus 5586583 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6p21.3 hemochromatosis 29273 rs4986950 HFE 3077 6 26200925 NM_139010 NP_620579 C/T T37I plus 5586583 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 6p21.3 hemochromatosis 29274 rs4986952 HSD3B1 3283 1 119766234 NM_000862 NP_000853 G/T R71I plus 5586594 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 29275 rs4986952 HSD3B1 3283 1 119766234 NM_000862 NP_000853 G/T R71I plus 5586594 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 29276 rs4986952 HSD3B1 3283 1 119766234 NM_000862 NP_000853 G/T R71I plus 5586594 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 29277 rs4986952 HSD3B1 3283 1 119766234 NM_000862 NP_000853 G/T R71I plus 5586594 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 29278 rs4986952 HSD3B1 3283 1 119766234 NM_000862 NP_000853 G/T R71I plus 5586594 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1" 29279 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 5586601 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29280 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 5586601 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29281 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 5586601 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29282 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 5586601 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29283 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 5586601 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29284 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 23193398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29285 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 23193398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29286 rs4986954 HSD3B2 3284 1 119674160 NM_000198 NP_000189 A/G D74N plus 23193398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p13.1 "hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2" 29287 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 5586607 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.08 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29288 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 5586607 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29289 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 5586607 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29290 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 5586607 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29291 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 5586607 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.13 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29292 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 28459199 549 KYUGEN CP CEPH (78) 156 0.09 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29293 rs4986956 IFNAR2 3455 21 33536120 NM_000874 NP_000865 C/T F8S plus 28459199 1335 KYUGEN JPK2 Japanese (100) 200 0.12 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29294 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 5586607 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.08 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29295 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 5586607 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29296 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 5586607 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29297 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 5586607 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29298 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 5586607 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.13 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29299 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 28459199 549 KYUGEN CP CEPH (78) 156 0.09 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29300 rs4986956 IFNAR2 3455 21 33536120 NM_207584 NP_997467 C/T F8S plus 28459199 1335 KYUGEN JPK2 Japanese (100) 200 0.12 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29301 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 5586607 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.08 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29302 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 5586607 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.1 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29303 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 5586607 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29304 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 5586607 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29305 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 5586607 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.13 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29306 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 28459199 549 KYUGEN CP CEPH (78) 156 0.09 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29307 rs4986956 IFNAR2 3455 21 33536120 NM_207585 NP_997468 C/T F8S plus 28459199 1335 KYUGEN JPK2 Japanese (100) 200 0.12 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 29308 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 5586620 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.05 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29309 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 5586620 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29310 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 5586620 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29311 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 5586620 777 SNP500CANCER HISP1 Hispanic (23) 44 0.02 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29312 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 5586620 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29313 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 14443472 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29314 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 23626410 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29315 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 23626410 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29316 rs4986958 IFNGR2 3460 21 33709164 NM_005534 NP_005525 C/G T58R plus 23626410 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 29317 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 5586722 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29318 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 5586722 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29319 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 5586722 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29320 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 5586722 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29321 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 5586722 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29322 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 24680369 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29323 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 24680369 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29324 rs4986970 LCAT 3931 16 66533821 NM_000229 NP_000220 A/T S232T minus 24680369 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q22.1 lecithin-cholesterol acyltransferase 29325 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.01 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29326 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 775 SNP500CANCER CAUC1 Caucasian (31) 56 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29327 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29328 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29329 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29330 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 5586734 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29331 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 24110191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29332 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 24110191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29333 rs4986973 LIG3 3980 17 30355564 NM_013975 NP_039269 C/T P899S plus 24110191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 17q11.2-q12 "ligase III, DNA, ATP-dependent" 29334 rs4986997 NAT2 10 8 18302204 NM_000015 NP_000006 A/T L137F plus 5586802 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 29335 rs4986997 NAT2 10 8 18302204 NM_000015 NP_000006 A/T L137F plus 5586802 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 29336 rs4986997 NAT2 10 8 18302204 NM_000015 NP_000006 A/T L137F plus 5586802 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 29337 rs4986997 NAT2 10 8 18302204 NM_000015 NP_000006 A/T L137F plus 5586802 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 29338 rs4986997 NAT2 10 8 18302204 NM_000015 NP_000006 A/T L137F plus 5586802 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 8p22 N-acetyltransferase 2 (arylamine N-acetyltransferase) 29339 rs4986998 NQO1 1728 16 68306370 NM_000903 NP_000894 C/T R139W minus 5586809 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 120 "by cluster,freq" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 29340 rs4986998 NQO1 1728 16 68306370 NM_000903 NP_000894 C/T R139W minus 5586809 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.03 120 "by cluster,freq" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 29341 rs4986998 NQO1 1728 16 68306370 NM_000903 NP_000894 C/T R139W minus 5586809 776 SNP500CANCER AFR1 African / African-American (24) 48 1 120 "by cluster,freq" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 29342 rs4986998 NQO1 1728 16 68306370 NM_000903 NP_000894 C/T R139W minus 5586809 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 29343 rs4986998 NQO1 1728 16 68306370 NM_000903 NP_000894 C/T R139W minus 5586809 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.04 120 "by cluster,freq" 16q22.1 "NAD(P)H dehydrogenase, quinone 1" 29344 rs4987023 SOD2 6648 6 160084104 NM_000636 NP_000627 A/G G76R minus 5586929 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29345 rs4987023 SOD2 6648 6 160084104 NM_000636 NP_000627 A/G G76R minus 5586929 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29346 rs4987023 SOD2 6648 6 160084104 NM_000636 NP_000627 A/G G76R minus 5586929 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29347 rs4987023 SOD2 6648 6 160084104 NM_000636 NP_000627 A/G G76R minus 5586929 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29348 rs4987023 SOD2 6648 6 160084104 NM_000636 NP_000627 A/G G76R minus 5586929 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29349 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 5586932 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29350 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 5586932 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29351 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 5586932 776 SNP500CANCER AFR1 African / African-American (24) 48 1 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29352 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 5586932 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29353 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 5586932 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.07 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29354 rs4987024 SULT1A2 6799 16 28514461 NM_001054 NP_001045 A/T Y62F minus 16341394 1166 PHARMGKB_PPII PA128747821 240 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29355 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 5586932 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29356 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 5586932 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29357 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 5586932 776 SNP500CANCER AFR1 African / African-American (24) 48 1 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29358 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 5586932 777 SNP500CANCER HISP1 Hispanic (23) 46 1 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29359 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 5586932 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.07 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29360 rs4987024 SULT1A2 6799 16 28514461 NM_177528 NP_803564 A/T Y62F minus 16341394 1166 PHARMGKB_PPII PA128747821 240 0.02 120 "by cluster,freq" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 29361 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 5587004 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29362 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 5587004 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29363 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 5587004 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29364 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 5587004 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29365 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 5587004 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29366 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 23776838 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29367 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 23776838 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29368 rs4987042 ZNF350 59348 19 57163675 NM_021632 NP_067645 C/T I69T minus 23776838 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.41 zinc finger protein 350 29369 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29370 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29371 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29372 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29373 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29374 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29375 rs4987046 BRCA2 675 13 31791271 NM_000059 NP_000050 A/G Y42C plus 5606241 1303 SEQUENOM CEPH CEPH (92) 92 1 113 "HapMap,freq" 13q12.3 "breast cancer 2, early onset" 29376 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29377 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29378 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29379 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29380 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29381 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 5606242 1303 SEQUENOM CEPH CEPH (92) 92 0.05 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29382 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 16355964 693 EGP_SNPS PDR90 NIHPDR 170 0.01 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29383 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 23736706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29384 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 23736706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29385 rs4987047 BRCA2 675 13 31851529 NM_000059 NP_000050 A/T I2944F plus 23736706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29386 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 13q12.3 "breast cancer 2, early onset" 29387 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29388 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q12.3 "breast cancer 2, early onset" 29389 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29390 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29391 rs4987048 BRCA2 675 13 31812196 NM_000059 NP_000050 A/G D1902N plus 5606243 1303 SEQUENOM CEPH CEPH (92) 92 1 113 by freq 13q12.3 "breast cancer 2, early onset" 29392 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29393 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29394 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29395 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29396 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29397 rs4987051 CASR 846 3 123486342 NM_000388 NP_000379 A/C P951T plus 5606252 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 113 "HapMap,freq" 3q21-q24 "calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)" 29398 rs4987060 EPHX2 2053 8 27457937 NM_001979 NP_001970 C/T P550L plus 5606281 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 29399 rs4987060 EPHX2 2053 8 27457937 NM_001979 NP_001970 C/T P550L plus 5606281 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 29400 rs4987060 EPHX2 2053 8 27457937 NM_001979 NP_001970 C/T P550L plus 5606281 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 29401 rs4987060 EPHX2 2053 8 27457937 NM_001979 NP_001970 C/T P550L plus 5606281 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 29402 rs4987060 EPHX2 2053 8 27457937 NM_001979 NP_001970 C/T P550L plus 5606281 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 29403 rs4987063 ERCC5 2073 13 102304691 NM_000123 NP_000114 A/G V145I plus 5606285 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29404 rs4987063 ERCC5 2073 13 102304691 NM_000123 NP_000114 A/G V145I plus 5606285 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29405 rs4987063 ERCC5 2073 13 102304691 NM_000123 NP_000114 A/G V145I plus 5606285 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29406 rs4987063 ERCC5 2073 13 102304691 NM_000123 NP_000114 A/G V145I plus 5606285 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29407 rs4987063 ERCC5 2073 13 102304691 NM_000123 NP_000114 A/G V145I plus 5606285 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29408 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29409 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29410 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29411 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29412 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29413 rs4987068 LIG1 3978 19 53332619 NM_000234 NP_000225 A/G R409H minus 5606321 1303 SEQUENOM CEPH CEPH (92) 92 0.01 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29414 rs4987070 LIG1 3978 19 53356469 NM_000234 NP_000225 A/G D72G minus 5606325 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29415 rs4987070 LIG1 3978 19 53356469 NM_000234 NP_000225 A/G D72G minus 5606325 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29416 rs4987070 LIG1 3978 19 53356469 NM_000234 NP_000225 A/G D72G minus 5606325 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29417 rs4987070 LIG1 3978 19 53356469 NM_000234 NP_000225 A/G D72G minus 5606325 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29418 rs4987070 LIG1 3978 19 53356469 NM_000234 NP_000225 A/G D72G minus 5606325 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29419 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 5606338 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29420 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 5606338 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29421 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 5606338 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29422 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 5606338 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29423 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 5606338 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29424 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 24180117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29425 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 24180117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29426 rs4987076 NAT1 9 8 18124281 NM_000662 NP_000653 A/G V149I plus 24180117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29427 rs4987102 AKR1C3 8644 10 5129689 NM_003739 NP_003730 A/G A106T plus 6903639 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 29428 rs4987102 AKR1C3 8644 10 5129689 NM_003739 NP_003730 A/G A106T plus 6903639 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 29429 rs4987102 AKR1C3 8644 10 5129689 NM_003739 NP_003730 A/G A106T plus 6903639 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 29430 rs4987102 AKR1C3 8644 10 5129689 NM_003739 NP_003730 A/G A106T plus 6903639 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 29431 rs4987102 AKR1C3 8644 10 5129689 NM_003739 NP_003730 A/G A106T plus 6903639 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 10p15-p14 "aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" 29432 rs4987104 ALOX12 239 17 6843477 NM_000697 NP_000688 A/G E259K plus 6903647 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 17p13.1 arachidonate 12-lipoxygenase 29433 rs4987104 ALOX12 239 17 6843477 NM_000697 NP_000688 A/G E259K plus 6903647 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 17p13.1 arachidonate 12-lipoxygenase 29434 rs4987104 ALOX12 239 17 6843477 NM_000697 NP_000688 A/G E259K plus 6903647 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 17p13.1 arachidonate 12-lipoxygenase 29435 rs4987104 ALOX12 239 17 6843477 NM_000697 NP_000688 A/G E259K plus 6903647 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 17p13.1 arachidonate 12-lipoxygenase 29436 rs4987104 ALOX12 239 17 6843477 NM_000697 NP_000688 A/G E259K plus 6903647 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 17p13.1 arachidonate 12-lipoxygenase 29437 rs4987109 APC 324 5 112205108 NM_000038 NP_000029 C/G S1973T plus 6903661 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 5q21-q22 adenomatosis polyposis coli 29438 rs4987109 APC 324 5 112205108 NM_000038 NP_000029 C/G S1973T plus 6903661 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 5q21-q22 adenomatosis polyposis coli 29439 rs4987109 APC 324 5 112205108 NM_000038 NP_000029 C/G S1973T plus 6903661 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 5q21-q22 adenomatosis polyposis coli 29440 rs4987109 APC 324 5 112205108 NM_000038 NP_000029 C/G S1973T plus 6903661 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 5q21-q22 adenomatosis polyposis coli 29441 rs4987109 APC 324 5 112205108 NM_000038 NP_000029 C/G S1973T plus 6903661 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 5q21-q22 adenomatosis polyposis coli 29442 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 6903678 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29443 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 6903678 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29444 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 6903678 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29445 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 6903678 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29446 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 6903678 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29447 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 7990000 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29448 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 23950825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29449 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 23950825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29450 rs4987115 BAK1 578 6 33651671 NM_001188 NP_001179 C/T A28V minus 23950825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 6p21.3 BCL2-antagonist/killer 1 29451 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 6903687 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29452 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 6903687 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.07 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29453 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 6903687 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29454 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 6903687 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29455 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 6903687 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29456 rs4987117 BRCA2 675 13 31812236 NM_000059 NP_000050 C/T T1915M plus 16355811 693 EGP_SNPS PDR90 NIHPDR 140 0.01 120 "by cluster,freq" 13q12.3 "breast cancer 2, early onset" 29457 rs4987121 CBR3 874 21 36440549 NM_001236 NP_001227 A/T M235L plus 6903701 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.02 113 by freq 21q22.2 carbonyl reductase 3 29458 rs4987121 CBR3 874 21 36440549 NM_001236 NP_001227 A/T M235L plus 6903701 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 113 by freq 21q22.2 carbonyl reductase 3 29459 rs4987121 CBR3 874 21 36440549 NM_001236 NP_001227 A/T M235L plus 6903701 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 113 by freq 21q22.2 carbonyl reductase 3 29460 rs4987121 CBR3 874 21 36440549 NM_001236 NP_001227 A/T M235L plus 6903701 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 21q22.2 carbonyl reductase 3 29461 rs4987121 CBR3 874 21 36440549 NM_001236 NP_001227 A/T M235L plus 6903701 778 SNP500CANCER PAC1 Pacific Rim (24) 44 1 113 by freq 21q22.2 carbonyl reductase 3 29462 rs4987125 CCR3 1232 3 46281715 NM_001837 NP_001828 A/G G21D plus 6903709 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29463 rs4987125 CCR3 1232 3 46281715 NM_001837 NP_001828 A/G G21D plus 6903709 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29464 rs4987125 CCR3 1232 3 46281715 NM_001837 NP_001828 A/G G21D plus 6903709 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29465 rs4987125 CCR3 1232 3 46281715 NM_001837 NP_001828 A/G G21D plus 6903709 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29466 rs4987125 CCR3 1232 3 46281715 NM_001837 NP_001828 A/G G21D plus 6903709 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29467 rs4987125 CCR3 1232 3 46281715 NM_178329 NP_847899 A/G G21D plus 6903709 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29468 rs4987125 CCR3 1232 3 46281715 NM_178329 NP_847899 A/G G21D plus 6903709 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29469 rs4987125 CCR3 1232 3 46281715 NM_178329 NP_847899 A/G G21D plus 6903709 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29470 rs4987125 CCR3 1232 3 46281715 NM_178329 NP_847899 A/G G21D plus 6903709 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29471 rs4987125 CCR3 1232 3 46281715 NM_178329 NP_847899 A/G G21D plus 6903709 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 3p21.3 chemokine (C-C motif) receptor 3 29472 rs4987127 CDKN2A 1029 9 21961085 NM_058195 NP_478102 A/G G147R minus 6903716 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 29473 rs4987127 CDKN2A 1029 9 21961085 NM_058195 NP_478102 A/G G147R minus 6903716 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 29474 rs4987127 CDKN2A 1029 9 21961085 NM_058195 NP_478102 A/G G147R minus 6903716 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 29475 rs4987127 CDKN2A 1029 9 21961085 NM_058195 NP_478102 A/G G147R minus 6903716 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 29476 rs4987127 CDKN2A 1029 9 21961085 NM_058195 NP_478102 A/G G147R minus 6903716 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 9p21 "cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)" 29477 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29478 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29479 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29480 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29481 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29482 rs4987161 CYP3A4 1576 7 99010732 NM_017460 NP_059488 C/T F189S minus 6903778 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 HapMap 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 29483 rs4987168 ERCC5 2073 13 102316102 NM_000123 NP_000114 A/G Q680R plus 6903794 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29484 rs4987168 ERCC5 2073 13 102316102 NM_000123 NP_000114 A/G Q680R plus 6903794 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29485 rs4987168 ERCC5 2073 13 102316102 NM_000123 NP_000114 A/G Q680R plus 6903794 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29486 rs4987168 ERCC5 2073 13 102316102 NM_000123 NP_000114 A/G Q680R plus 6903794 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29487 rs4987168 ERCC5 2073 13 102316102 NM_000123 NP_000114 A/G Q680R plus 6903794 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 13q22 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" 29488 rs4987181 LIG1 3978 19 53356529 NM_000234 NP_000225 C/T P52L minus 6903843 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29489 rs4987181 LIG1 3978 19 53356529 NM_000234 NP_000225 C/T P52L minus 6903843 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29490 rs4987181 LIG1 3978 19 53356529 NM_000234 NP_000225 C/T P52L minus 6903843 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29491 rs4987181 LIG1 3978 19 53356529 NM_000234 NP_000225 C/T P52L minus 6903843 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29492 rs4987181 LIG1 3978 19 53356529 NM_000234 NP_000225 C/T P52L minus 6903843 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 19q13.2-q13.3 "ligase I, DNA, ATP-dependent" 29493 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29494 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29495 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29496 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29497 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29498 rs4987188 MSH2 4436 2 47555108 NM_000251 NP_000242 A/G G322D plus 6903873 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 113 "HapMap,freq" 2p22-p21 "mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" 29499 rs4987195 NAT1 9 8 18124456 NM_000662 NP_000653 C/T T207I plus 6903886 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29500 rs4987195 NAT1 9 8 18124456 NM_000662 NP_000653 C/T T207I plus 6903886 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29501 rs4987195 NAT1 9 8 18124456 NM_000662 NP_000653 C/T T207I plus 6903886 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29502 rs4987195 NAT1 9 8 18124456 NM_000662 NP_000653 C/T T207I plus 6903886 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29503 rs4987195 NAT1 9 8 18124456 NM_000662 NP_000653 C/T T207I plus 6903886 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 113 by freq 8p23.1-p21.3 N-acetyltransferase 1 (arylamine N-acetyltransferase) 29504 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29505 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29506 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29507 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29508 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29509 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29510 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 6903907 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29511 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 24683069 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29512 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 24683069 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29513 rs4987202 RAD23A 5886 19 12920626 NM_005053 NP_005044 C/T T200M plus 24683069 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 19p13.2 RAD23 homolog A (S. cerevisiae) 29514 rs4987203 RAD23A 5886 19 12920563 NM_005053 NP_005044 A/G R179Q plus 6903908 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 19p13.2 RAD23 homolog A (S. cerevisiae) 29515 rs4987203 RAD23A 5886 19 12920563 NM_005053 NP_005044 A/G R179Q plus 6903908 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 19p13.2 RAD23 homolog A (S. cerevisiae) 29516 rs4987203 RAD23A 5886 19 12920563 NM_005053 NP_005044 A/G R179Q plus 6903908 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 19p13.2 RAD23 homolog A (S. cerevisiae) 29517 rs4987203 RAD23A 5886 19 12920563 NM_005053 NP_005044 A/G R179Q plus 6903908 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 19p13.2 RAD23 homolog A (S. cerevisiae) 29518 rs4987203 RAD23A 5886 19 12920563 NM_005053 NP_005044 A/G R179Q plus 6903908 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 19p13.2 RAD23 homolog A (S. cerevisiae) 29519 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29520 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29521 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29522 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29523 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29524 rs4987205 RAD50 10111 5 131943473 NM_005732 NP_005723 C/T T191I plus 6903914 1303 SEQUENOM CEPH CEPH (92) 92 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29525 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29526 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29527 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29528 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29529 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29530 rs4987205 RAD50 10111 5 131943473 NM_133482 NP_597816 C/T T52I plus 6903914 1303 SEQUENOM CEPH CEPH (92) 92 1 113 by freq 5q31 RAD50 homolog (S. cerevisiae) 29531 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 6903929 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.01 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29532 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 6903929 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29533 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 6903929 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29534 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 6903929 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29535 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 6903929 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29536 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 23950640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29537 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 23950640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29538 rs4987215 RECQL 5965 12 21515813 NM_002907 NP_002898 C/G D495H minus 23950640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29539 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 6903929 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.01 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29540 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 6903929 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29541 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 6903929 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29542 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 6903929 777 SNP500CANCER HISP1 Hispanic (23) 44 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29543 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 6903929 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29544 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 23950640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29545 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 23950640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29546 rs4987215 RECQL 5965 12 21515813 NM_032941 NP_116559 C/G D495H minus 23950640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 12p12 RecQ protein-like (DNA helicase Q1-like) 29547 rs4987227 TCN1 6947 11 59383154 NM_001062 NP_001053 A/G N240S minus 6903951 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 113 by freq 11q11-q12 "transcobalamin I (vitamin B12 binding protein, R binder family)" 29548 rs4987227 TCN1 6947 11 59383154 NM_001062 NP_001053 A/G N240S minus 6903951 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 11q11-q12 "transcobalamin I (vitamin B12 binding protein, R binder family)" 29549 rs4987227 TCN1 6947 11 59383154 NM_001062 NP_001053 A/G N240S minus 6903951 776 SNP500CANCER AFR1 African / African-American (24) 46 1 113 by freq 11q11-q12 "transcobalamin I (vitamin B12 binding protein, R binder family)" 29550 rs4987227 TCN1 6947 11 59383154 NM_001062 NP_001053 A/G N240S minus 6903951 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 11q11-q12 "transcobalamin I (vitamin B12 binding protein, R binder family)" 29551 rs4987227 TCN1 6947 11 59383154 NM_001062 NP_001053 A/G N240S minus 6903951 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 113 by freq 11q11-q12 "transcobalamin I (vitamin B12 binding protein, R binder family)" 29552 rs4987233 TLR4 7099 9 117555159 NM_003266 NP_003257 A/G S360N plus 6903968 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29553 rs4987233 TLR4 7099 9 117555159 NM_003266 NP_003257 A/G S360N plus 6903968 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 9q32-q33 toll-like receptor 4 29554 rs4987233 TLR4 7099 9 117555159 NM_003266 NP_003257 A/G S360N plus 6903968 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29555 rs4987233 TLR4 7099 9 117555159 NM_003266 NP_003257 A/G S360N plus 6903968 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 9q32-q33 toll-like receptor 4 29556 rs4987233 TLR4 7099 9 117555159 NM_003266 NP_003257 A/G S360N plus 6903968 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29557 rs4987233 TLR4 7099 9 117555159 NM_138554 NP_612564 A/G S400N plus 6903968 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29558 rs4987233 TLR4 7099 9 117555159 NM_138554 NP_612564 A/G S400N plus 6903968 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 9q32-q33 toll-like receptor 4 29559 rs4987233 TLR4 7099 9 117555159 NM_138554 NP_612564 A/G S400N plus 6903968 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29560 rs4987233 TLR4 7099 9 117555159 NM_138554 NP_612564 A/G S400N plus 6903968 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 9q32-q33 toll-like receptor 4 29561 rs4987233 TLR4 7099 9 117555159 NM_138554 NP_612564 A/G S400N plus 6903968 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29562 rs4987233 TLR4 7099 9 117555159 NM_138556 NP_612566 A/G S343N plus 6903968 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29563 rs4987233 TLR4 7099 9 117555159 NM_138556 NP_612566 A/G S343N plus 6903968 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 9q32-q33 toll-like receptor 4 29564 rs4987233 TLR4 7099 9 117555159 NM_138556 NP_612566 A/G S343N plus 6903968 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29565 rs4987233 TLR4 7099 9 117555159 NM_138556 NP_612566 A/G S343N plus 6903968 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 9q32-q33 toll-like receptor 4 29566 rs4987233 TLR4 7099 9 117555159 NM_138556 NP_612566 A/G S343N plus 6903968 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29567 rs4987233 TLR4 7099 9 117555159 NM_138557 NP_612567 A/G S200N plus 6903968 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29568 rs4987233 TLR4 7099 9 117555159 NM_138557 NP_612567 A/G S200N plus 6903968 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 9q32-q33 toll-like receptor 4 29569 rs4987233 TLR4 7099 9 117555159 NM_138557 NP_612567 A/G S200N plus 6903968 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29570 rs4987233 TLR4 7099 9 117555159 NM_138557 NP_612567 A/G S200N plus 6903968 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 113 by freq 9q32-q33 toll-like receptor 4 29571 rs4987233 TLR4 7099 9 117555159 NM_138557 NP_612567 A/G S200N plus 6903968 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29572 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 6903976 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.06 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29573 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 6903976 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29574 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 6903976 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29575 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 6903976 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29576 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 6903976 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29577 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 16359348 693 EGP_SNPS PDR90 NIHPDR 170 0.08 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29578 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 23471979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29579 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 23471979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29580 rs4987236 WRN 7486 8 31041477 NM_000553 NP_000544 A/G V114I plus 23471979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p12-p11.2 Werner syndrome 29581 rs4987241 ZNF350 59348 19 57164101 NM_021632 NP_067645 A/G M37I minus 6903990 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 19q13.41 zinc finger protein 350 29582 rs4987241 ZNF350 59348 19 57164101 NM_021632 NP_067645 A/G M37I minus 6903990 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 19q13.41 zinc finger protein 350 29583 rs4987241 ZNF350 59348 19 57164101 NM_021632 NP_067645 A/G M37I minus 6903990 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 19q13.41 zinc finger protein 350 29584 rs4987241 ZNF350 59348 19 57164101 NM_021632 NP_067645 A/G M37I minus 6903990 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 19q13.41 zinc finger protein 350 29585 rs4987241 ZNF350 59348 19 57164101 NM_021632 NP_067645 A/G M37I minus 6903990 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 113 by freq 19q13.41 zinc finger protein 350 29586 rs4987310 SELL 6402 1 166405496 NM_000655 NP_000646 C/T P213S minus 6904144 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.33 123 "by cluster,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29587 rs4987310 SELL 6402 1 166405496 NM_000655 NP_000646 C/T P213S minus 6904144 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 123 "by cluster,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29588 rs4987310 SELL 6402 1 166405496 NM_000655 NP_000646 C/T P213S minus 23189336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29589 rs4987310 SELL 6402 1 166405496 NM_000655 NP_000646 C/T P213S minus 23189336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29590 rs4987310 SELL 6402 1 166405496 NM_000655 NP_000646 C/T P213S minus 23189336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by cluster,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29591 rs4987382 SELL 6402 1 166392597 NM_000655 NP_000646 A/G N369D minus 6904225 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 "by doubleHit,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29592 rs4987382 SELL 6402 1 166392597 NM_000655 NP_000646 A/G N369D minus 23189000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29593 rs4987382 SELL 6402 1 166392597 NM_000655 NP_000646 A/G N369D minus 23189000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29594 rs4987382 SELL 6402 1 166392597 NM_000655 NP_000646 A/G N369D minus 23189000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 1q23-q25 selectin L (lymphocyte adhesion molecule 1) 29595 rs4987657 TRPV6 55503 7 142091750 NM_018646 NP_061116 C/T C157R minus 6904509 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.48 116 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29596 rs4987657 TRPV6 55503 7 142091750 NM_018646 NP_061116 C/T C157R minus 6904509 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 116 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29597 rs4987667 TRPV6 55503 7 142089745 NM_018646 NP_061116 A/G M378V minus 6904519 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.48 123 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29598 rs4987667 TRPV6 55503 7 142089745 NM_018646 NP_061116 A/G M378V minus 6904519 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29599 rs4987667 TRPV6 55503 7 142089745 NM_018646 NP_061116 A/G M378V minus 23768032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29600 rs4987667 TRPV6 55503 7 142089745 NM_018646 NP_061116 A/G M378V minus 23768032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29601 rs4987667 TRPV6 55503 7 142089745 NM_018646 NP_061116 A/G M378V minus 23768032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29602 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 6904534 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 24 0.5 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29603 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 6904534 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29604 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 6904534 1303 SEQUENOM CEPH CEPH (92) 92 1 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29605 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 23768012 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29606 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 23768012 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29607 rs4987682 TRPV6 55503 7 142086433 NM_018646 NP_061116 C/T M681T minus 23768012 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by cluster,freq" 7q33-q34 "transient receptor potential cation channel, subfamily V, member 6" 29608 rs4987945 ATM 472 11 107627802 NM_000051 NP_000042 C/G L546V plus 6904854 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29609 rs4987945 ATM 472 11 107627802 NM_000051 NP_000042 C/G L546V plus 23582576 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29610 rs4987945 ATM 472 11 107627802 NM_000051 NP_000042 C/G L546V plus 23582576 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29611 rs4987945 ATM 472 11 107627802 NM_000051 NP_000042 C/G L546V plus 23582576 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29612 rs4988350 BRIP1 83990 17 57216450 NM_032043 NP_114432 G/T F531V minus 6905471 844 STRUEWING CEPH_PARENT_1 120 0.15 113 "HapMap,freq" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 29613 rs4988350 BRIP1 83990 17 57216450 NM_032043 NP_114432 G/T F531V minus 6905471 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 113 "HapMap,freq" 17q22-q24 BRCA1 interacting protein C-terminal helicase 1 29614 rs4988492 GHRH 2691 20 35316112 NM_021081 NP_066567 A/G L75F plus 8318871 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,doubleHit,freq,cluster" 20q11.2 growth hormone releasing hormone 29615 rs4988492 GHRH 2691 20 35316112 NM_021081 NP_066567 A/G L75F plus 23781806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 20q11.2 growth hormone releasing hormone 29616 rs4988492 GHRH 2691 20 35316112 NM_021081 NP_066567 A/G L75F plus 23781806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 20q11.2 growth hormone releasing hormone 29617 rs4988492 GHRH 2691 20 35316112 NM_021081 NP_066567 A/G L75F plus 23781806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 20q11.2 growth hormone releasing hormone 29618 rs4988498 GHRHR 2692 7 30782816 NM_000823 NP_000814 G/T E121D plus 14148490 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 120 "HapMap,freq,cluster" 7p14 growth hormone releasing hormone receptor 29619 rs5002476 ITGB8 3696 7 20214957 NM_002214 NP_002205 C/T S552F plus 7888555 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 113 HapMap 7p15.3 "integrin, beta 8" 29620 rs5023688 CD109 135228 6 74553873 NM_133493 NP_598000 A/G V845I plus 7963108 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.39 116 "HapMap,doubleHit,freq,cluster" 6q14.1 CD109 antigen (Gov platelet alloantigens) 29621 rs5029941 TNFAIP3 7128 6 138237753 NM_006290 NP_006281 C/T A125V plus 7984948 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.04 113 by freq 6q23 "tumor necrosis factor, alpha-induced protein 3" 29622 rs5029942 TNFAIP3 7128 6 138237759 NM_006290 NP_006281 G/T F127C plus 7984949 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.37 123 "by doubleHit,freq,cluster" 6q23 "tumor necrosis factor, alpha-induced protein 3" 29623 rs5029942 TNFAIP3 7128 6 138237759 NM_006290 NP_006281 G/T F127C plus 7984949 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 123 "by doubleHit,freq,cluster" 6q23 "tumor necrosis factor, alpha-induced protein 3" 29624 rs5029942 TNFAIP3 7128 6 138237759 NM_006290 NP_006281 G/T F127C plus 23371171 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q23 "tumor necrosis factor, alpha-induced protein 3" 29625 rs5029942 TNFAIP3 7128 6 138237759 NM_006290 NP_006281 G/T F127C plus 23371171 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 6q23 "tumor necrosis factor, alpha-induced protein 3" 29626 rs5029942 TNFAIP3 7128 6 138237759 NM_006290 NP_006281 G/T F127C plus 23371171 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q23 "tumor necrosis factor, alpha-induced protein 3" 29627 rs5030593 CASP6 839 4 110969709 NM_001226 NP_001217 A/T T182S minus 7985717 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29628 rs5030593 CASP6 839 4 110969709 NM_001226 NP_001217 A/T T182S minus 23720004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29629 rs5030593 CASP6 839 4 110969709 NM_001226 NP_001217 A/T T182S minus 23720004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29630 rs5030593 CASP6 839 4 110969709 NM_001226 NP_001217 A/T T182S minus 23720004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29631 rs5030593 CASP6 839 4 110969709 NM_032992 NP_116787 A/T T93S minus 7985717 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29632 rs5030593 CASP6 839 4 110969709 NM_032992 NP_116787 A/T T93S minus 23720004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29633 rs5030593 CASP6 839 4 110969709 NM_032992 NP_116787 A/T T93S minus 23720004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29634 rs5030593 CASP6 839 4 110969709 NM_032992 NP_116787 A/T T93S minus 23720004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29635 rs5030674 CASP6 839 4 110973443 NM_001226 NP_001217 A/G A109T minus 8819929 506 NCBI NIHPDR NIHPDR 830 0.01 120 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29636 rs5030674 CASP6 839 4 110973443 NM_032992 NP_116787 A/G A20T minus 8819929 506 NCBI NIHPDR NIHPDR 830 0.01 120 "by cluster,freq" 4q25 "caspase 6, apoptosis-related cysteine protease" 29637 rs5030718 TLR4 7099 9 117555380 NM_003266 NP_003257 A/G E434K plus 16214291 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29638 rs5030718 TLR4 7099 9 117555380 NM_003266 NP_003257 A/G E434K plus 16214291 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29639 rs5030718 TLR4 7099 9 117555380 NM_003266 NP_003257 A/G E434K plus 16214291 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29640 rs5030718 TLR4 7099 9 117555380 NM_138554 NP_612564 A/G E474K plus 16214291 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29641 rs5030718 TLR4 7099 9 117555380 NM_138554 NP_612564 A/G E474K plus 16214291 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29642 rs5030718 TLR4 7099 9 117555380 NM_138554 NP_612564 A/G E474K plus 16214291 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29643 rs5030718 TLR4 7099 9 117555380 NM_138556 NP_612566 A/G E417K plus 16214291 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29644 rs5030718 TLR4 7099 9 117555380 NM_138556 NP_612566 A/G E417K plus 16214291 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29645 rs5030718 TLR4 7099 9 117555380 NM_138556 NP_612566 A/G E417K plus 16214291 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29646 rs5030718 TLR4 7099 9 117555380 NM_138557 NP_612567 A/G E274K plus 16214291 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29647 rs5030718 TLR4 7099 9 117555380 NM_138557 NP_612567 A/G E274K plus 16214291 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29648 rs5030718 TLR4 7099 9 117555380 NM_138557 NP_612567 A/G E274K plus 16214291 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29649 rs5030719 TLR4 7099 9 117555490 NM_003266 NP_003257 G/T Q470H plus 16214292 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29650 rs5030719 TLR4 7099 9 117555490 NM_003266 NP_003257 G/T Q470H plus 16214292 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29651 rs5030719 TLR4 7099 9 117555490 NM_003266 NP_003257 G/T Q470H plus 16214292 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29652 rs5030719 TLR4 7099 9 117555490 NM_138554 NP_612564 G/T Q510H plus 16214292 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29653 rs5030719 TLR4 7099 9 117555490 NM_138554 NP_612564 G/T Q510H plus 16214292 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29654 rs5030719 TLR4 7099 9 117555490 NM_138554 NP_612564 G/T Q510H plus 16214292 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29655 rs5030719 TLR4 7099 9 117555490 NM_138556 NP_612566 G/T Q453H plus 16214292 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29656 rs5030719 TLR4 7099 9 117555490 NM_138556 NP_612566 G/T Q453H plus 16214292 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29657 rs5030719 TLR4 7099 9 117555490 NM_138556 NP_612566 G/T Q453H plus 16214292 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29658 rs5030719 TLR4 7099 9 117555490 NM_138557 NP_612567 G/T Q310H plus 16214292 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29659 rs5030719 TLR4 7099 9 117555490 NM_138557 NP_612567 G/T Q310H plus 16214292 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29660 rs5030719 TLR4 7099 9 117555490 NM_138557 NP_612567 G/T Q310H plus 16214292 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 9q32-q33 toll-like receptor 4 29661 rs5030878 FPR1 2357 19 56942028 NM_002029 NP_002020 C/T I11T minus 23767446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 29662 rs5030878 FPR1 2357 19 56942028 NM_002029 NP_002020 C/T I11T minus 23767446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 29663 rs5030878 FPR1 2357 19 56942028 NM_002029 NP_002020 C/T I11T minus 23767446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 19q13.4 formyl peptide receptor 1 29664 rs5031003 ATM 472 11 107665581 NM_000051 NP_000042 A/G A1427T plus 7986202 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29665 rs5031003 ATM 472 11 107665581 NM_000051 NP_000042 A/G A1427T plus 7986202 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29666 rs5031003 ATM 472 11 107665581 NM_000051 NP_000042 A/G A1427T plus 7986202 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29667 rs5031003 ATM 472 11 107665581 NM_000051 NP_000042 A/G A1427T plus 7986202 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29668 rs5031003 ATM 472 11 107665581 NM_000051 NP_000042 A/G A1427T plus 7986202 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29669 rs5031003 ATM 472 11 107665581 NM_138292 NP_612149 A/G A79T plus 7986202 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29670 rs5031003 ATM 472 11 107665581 NM_138292 NP_612149 A/G A79T plus 7986202 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29671 rs5031003 ATM 472 11 107665581 NM_138292 NP_612149 A/G A79T plus 7986202 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29672 rs5031003 ATM 472 11 107665581 NM_138292 NP_612149 A/G A79T plus 7986202 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29673 rs5031003 ATM 472 11 107665581 NM_138292 NP_612149 A/G A79T plus 7986202 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29674 rs5031003 ATM 472 11 107665581 NM_138293 NP_612150 A/G A79T plus 7986202 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29675 rs5031003 ATM 472 11 107665581 NM_138293 NP_612150 A/G A79T plus 7986202 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29676 rs5031003 ATM 472 11 107665581 NM_138293 NP_612150 A/G A79T plus 7986202 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29677 rs5031003 ATM 472 11 107665581 NM_138293 NP_612150 A/G A79T plus 7986202 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29678 rs5031003 ATM 472 11 107665581 NM_138293 NP_612150 A/G A79T plus 7986202 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 11q22-q23 "ataxia telangiectasia mutated (includes complementation groups A, C and D)" 29679 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 7986224 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29680 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 7986224 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29681 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 7986224 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29682 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 7986224 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29683 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 7986224 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29684 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 16341320 1166 PHARMGKB_PPII PA128747821 240 0.01 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29685 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 23789037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29686 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 23789037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29687 rs5031015 COMT 1312 22 18325657 NM_000754 NP_000745 A/G A102T plus 23789037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29688 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 7986224 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29689 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 7986224 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29690 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 7986224 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29691 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 7986224 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29692 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 7986224 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29693 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 16341320 1166 PHARMGKB_PPII PA128747821 240 0.01 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29694 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 23789037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29695 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 23789037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29696 rs5031015 COMT 1312 22 18325657 NM_007310 NP_009294 A/G A52T plus 23789037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q11.21 catechol-O-methyltransferase 29697 rs5031016 CYP2A6 1548 19 46073511 NM_000762 NP_000753 C/T I471T minus 7986225 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29698 rs5031016 CYP2A6 1548 19 46073511 NM_000762 NP_000753 C/T I471T minus 7986225 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29699 rs5031016 CYP2A6 1548 19 46073511 NM_000762 NP_000753 C/T I471T minus 7986225 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29700 rs5031016 CYP2A6 1548 19 46073511 NM_000762 NP_000753 C/T I471T minus 7986225 777 SNP500CANCER HISP1 Hispanic (23) 46 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29701 rs5031016 CYP2A6 1548 19 46073511 NM_000762 NP_000753 C/T I471T minus 7986225 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29702 rs5031016 CYP2A7 1549 19 46073511 NM_000764 NP_000755 C/T I471T minus 7986225 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29703 rs5031016 CYP2A7 1549 19 46073511 NM_000764 NP_000755 C/T I471T minus 7986225 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29704 rs5031016 CYP2A7 1549 19 46073511 NM_000764 NP_000755 C/T I471T minus 7986225 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29705 rs5031016 CYP2A7 1549 19 46073511 NM_000764 NP_000755 C/T I471T minus 7986225 777 SNP500CANCER HISP1 Hispanic (23) 46 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29706 rs5031016 CYP2A7 1549 19 46073511 NM_000764 NP_000755 C/T I471T minus 7986225 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29707 rs5031016 CYP2A7 1549 19 46073511 NM_030589 NP_085079 C/T I420T minus 7986225 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29708 rs5031016 CYP2A7 1549 19 46073511 NM_030589 NP_085079 C/T I420T minus 7986225 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29709 rs5031016 CYP2A7 1549 19 46073511 NM_030589 NP_085079 C/T I420T minus 7986225 776 SNP500CANCER AFR1 African / African-American (24) 48 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29710 rs5031016 CYP2A7 1549 19 46073511 NM_030589 NP_085079 C/T I420T minus 7986225 777 SNP500CANCER HISP1 Hispanic (23) 46 1 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29711 rs5031016 CYP2A7 1549 19 46073511 NM_030589 NP_085079 C/T I420T minus 7986225 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 117 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 7" 29712 rs5031017 CYP2A6 1548 19 46041590 NM_000762 NP_000753 G/T G479V minus 7986226 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.04 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29713 rs5031017 CYP2A6 1548 19 46041590 NM_000762 NP_000753 G/T G479V minus 7986226 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29714 rs5031017 CYP2A6 1548 19 46041590 NM_000762 NP_000753 G/T G479V minus 7986226 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29715 rs5031017 CYP2A6 1548 19 46041590 NM_000762 NP_000753 G/T G479V minus 7986226 777 SNP500CANCER HISP1 Hispanic (23) 44 1 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29716 rs5031017 CYP2A6 1548 19 46041590 NM_000762 NP_000753 G/T G479V minus 7986226 778 SNP500CANCER PAC1 Pacific Rim (24) 46 0.13 113 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 29717 rs5031039 NFE2L2 4780 2 177924257 NM_006164 NP_006155 C/T S99P minus 7986267 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 29718 rs5031039 NFE2L2 4780 2 177924257 NM_006164 NP_006155 C/T S99P minus 7986267 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 113 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 29719 rs5031039 NFE2L2 4780 2 177924257 NM_006164 NP_006155 C/T S99P minus 7986267 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 113 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 29720 rs5031039 NFE2L2 4780 2 177924257 NM_006164 NP_006155 C/T S99P minus 7986267 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 29721 rs5031039 NFE2L2 4780 2 177924257 NM_006164 NP_006155 C/T S99P minus 7986267 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 2q31 nuclear factor (erythroid-derived 2)-like 2 29722 rs5031050 TLR4 7099 9 117554985 NM_003266 NP_003257 A/T F302Y plus 7986288 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29723 rs5031050 TLR4 7099 9 117554985 NM_003266 NP_003257 A/T F302Y plus 7986288 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 9q32-q33 toll-like receptor 4 29724 rs5031050 TLR4 7099 9 117554985 NM_003266 NP_003257 A/T F302Y plus 7986288 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29725 rs5031050 TLR4 7099 9 117554985 NM_003266 NP_003257 A/T F302Y plus 7986288 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 9q32-q33 toll-like receptor 4 29726 rs5031050 TLR4 7099 9 117554985 NM_003266 NP_003257 A/T F302Y plus 7986288 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29727 rs5031050 TLR4 7099 9 117554985 NM_138554 NP_612564 A/T F342Y plus 7986288 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29728 rs5031050 TLR4 7099 9 117554985 NM_138554 NP_612564 A/T F342Y plus 7986288 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 9q32-q33 toll-like receptor 4 29729 rs5031050 TLR4 7099 9 117554985 NM_138554 NP_612564 A/T F342Y plus 7986288 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29730 rs5031050 TLR4 7099 9 117554985 NM_138554 NP_612564 A/T F342Y plus 7986288 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 9q32-q33 toll-like receptor 4 29731 rs5031050 TLR4 7099 9 117554985 NM_138554 NP_612564 A/T F342Y plus 7986288 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29732 rs5031050 TLR4 7099 9 117554985 NM_138556 NP_612566 A/T F285Y plus 7986288 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29733 rs5031050 TLR4 7099 9 117554985 NM_138556 NP_612566 A/T F285Y plus 7986288 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 9q32-q33 toll-like receptor 4 29734 rs5031050 TLR4 7099 9 117554985 NM_138556 NP_612566 A/T F285Y plus 7986288 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29735 rs5031050 TLR4 7099 9 117554985 NM_138556 NP_612566 A/T F285Y plus 7986288 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 9q32-q33 toll-like receptor 4 29736 rs5031050 TLR4 7099 9 117554985 NM_138556 NP_612566 A/T F285Y plus 7986288 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29737 rs5031050 TLR4 7099 9 117554985 NM_138557 NP_612567 A/T F142Y plus 7986288 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 113 by freq 9q32-q33 toll-like receptor 4 29738 rs5031050 TLR4 7099 9 117554985 NM_138557 NP_612567 A/T F142Y plus 7986288 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 113 by freq 9q32-q33 toll-like receptor 4 29739 rs5031050 TLR4 7099 9 117554985 NM_138557 NP_612567 A/T F142Y plus 7986288 776 SNP500CANCER AFR1 African / African-American (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29740 rs5031050 TLR4 7099 9 117554985 NM_138557 NP_612567 A/T F142Y plus 7986288 777 SNP500CANCER HISP1 Hispanic (23) 46 1 113 by freq 9q32-q33 toll-like receptor 4 29741 rs5031050 TLR4 7099 9 117554985 NM_138557 NP_612567 A/T F142Y plus 7986288 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 113 by freq 9q32-q33 toll-like receptor 4 29742 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 7987435 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29743 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 7987435 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29744 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 7987435 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29745 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 8424264 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29746 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 24205110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29747 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 24205110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29748 rs5741804 BPI 671 20 36385756 NM_001725 NP_001716 C/T A280V plus 24205110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29749 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 7987455 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29750 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 7987455 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29751 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 7987455 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29752 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 24205127 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29753 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 24205127 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29754 rs5741809 BPI 671 20 36389440 NM_001725 NP_001716 A/G N404D plus 24205127 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 20q11.23-q12 bactericidal/permeability-increasing protein 29755 rs5742906 CCR3 1232 3 46281769 NM_001837 NP_001828 C/T P39L plus 7986639 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1546 0 114 by freq 3p21.3 chemokine (C-C motif) receptor 3 29756 rs5742906 CCR3 1232 3 46281769 NM_178329 NP_847899 C/T P39L plus 7986639 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1546 0 114 by freq 3p21.3 chemokine (C-C motif) receptor 3 29757 rs5742913 TCF7 6932 5 133479582 NM_003202 NP_003193 C/T P134S plus 7986647 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1490 0.06 114 by freq 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 29758 rs5742913 TCF7 6932 5 133479582 NM_201632 NP_963963 C/T P19S plus 7986647 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1490 0.06 114 by freq 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 29759 rs5742913 TCF7 6932 5 133479582 NM_201633 NP_963964 C/T P19S plus 7986647 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1490 0.06 114 by freq 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 29760 rs5742913 TCF7 6932 5 133479582 NM_201634 NP_963965 C/T P19S plus 7986647 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1490 0.06 114 by freq 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 29761 rs5742913 TCF7 6932 5 133479582 NM_213648 NP_998813 C/T P19S plus 7986647 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1490 0.06 114 by freq 5q31.1 "transcription factor 7 (T-cell specific, HMG-box)" 29762 rs5742915 PML 5371 15 72123686 NM_033238 NP_150241 C/T F645L plus 7986650 854 ATELENTI healthy swiss blood donors 95 0.47 120 "HapMap,freq" 15q22 promyelocytic leukemia 29763 rs5742915 PML 5371 15 72123686 NM_033238 NP_150241 C/T F645L plus 7986650 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.45 120 "HapMap,freq" 15q22 promyelocytic leukemia 29764 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 7987102 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29765 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 7987102 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29766 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 7987102 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29767 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 23544949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29768 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 23544949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29769 rs5743278 CARD15 64127 16 49303497 NM_022162 NP_071445 C/G A725G plus 23544949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29770 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 7987103 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29771 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 7987103 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29772 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 7987103 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29773 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 23544977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29774 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 23544977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29775 rs5743279 CARD15 64127 16 49303692 NM_022162 NP_071445 A/G R790Q plus 23544977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p12-q21 "caspase recruitment domain family, member 15" 29776 rs5743291 CARD15 64127 16 49314777 NM_022162 NP_071445 A/G V955I plus 7987116 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 114 by freq 16p12-q21 "caspase recruitment domain family, member 15" 29777 rs5743291 CARD15 64127 16 49314777 NM_022162 NP_071445 A/G V955I plus 7987116 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 114 by freq 16p12-q21 "caspase recruitment domain family, member 15" 29778 rs5743291 CARD15 64127 16 49314777 NM_022162 NP_071445 A/G V955I plus 7987116 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 114 by freq 16p12-q21 "caspase recruitment domain family, member 15" 29779 rs5743318 TLR3 7098 4 187380198 NM_003265 NP_003256 A/T S737T plus 7987149 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 114 by freq 4q35 toll-like receptor 3 29780 rs5743318 TLR3 7098 4 187380198 NM_003265 NP_003256 A/T S737T plus 7987149 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 by freq 4q35 toll-like receptor 3 29781 rs5743318 TLR3 7098 4 187380198 NM_003265 NP_003256 A/T S737T plus 7987149 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 4q35 toll-like receptor 3 29782 rs5743342 CARD4 10392 7 30265159 NM_006092 NP_006083 A/G D372N minus 7987183 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 114 by freq 7p15-p14 "caspase recruitment domain family, member 4" 29783 rs5743342 CARD4 10392 7 30265159 NM_006092 NP_006083 A/G D372N minus 7987183 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 by freq 7p15-p14 "caspase recruitment domain family, member 4" 29784 rs5743342 CARD4 10392 7 30265159 NM_006092 NP_006083 A/G D372N minus 7987183 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 7p15-p14 "caspase recruitment domain family, member 4" 29785 rs5743344 CARD4 10392 7 30264612 NM_006092 NP_006083 C/T A554V minus 7987186 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 114 HapMap 7p15-p14 "caspase recruitment domain family, member 4" 29786 rs5743344 CARD4 10392 7 30264612 NM_006092 NP_006083 C/T A554V minus 7987186 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 HapMap 7p15-p14 "caspase recruitment domain family, member 4" 29787 rs5743344 CARD4 10392 7 30264612 NM_006092 NP_006083 C/T A554V minus 7987186 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 HapMap 7p15-p14 "caspase recruitment domain family, member 4" 29788 rs5743344 CARD4 10392 7 30264612 NM_006092 NP_006083 C/T A554V minus 7987186 885 TSC-CSHL HapMap-CEPH-30-trios 110 1 114 HapMap 7p15-p14 "caspase recruitment domain family, member 4" 29789 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 7987408 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.02 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29790 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 7987408 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29791 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 7987408 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29792 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 23783193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29793 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 23783193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29794 rs5743498 BPI 671 20 36366062 NM_001725 NP_001716 C/T A12V plus 23783193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q11.23-q12 bactericidal/permeability-increasing protein 29795 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 7987428 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29796 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 7987428 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 0.08 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29797 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 7987428 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29798 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 24694542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29799 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 24694542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29800 rs5743509 BPI 671 20 36373728 NM_001725 NP_001716 C/T A196V plus 24694542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 20q11.23-q12 bactericidal/permeability-increasing protein 29801 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 7987550 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 123 "by cluster,freq" 4p14 toll-like receptor 1 29802 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 7987550 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.06 123 "by cluster,freq" 4p14 toll-like receptor 1 29803 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 7987550 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29804 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 23715774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 4p14 toll-like receptor 1 29805 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 23715774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4p14 toll-like receptor 1 29806 rs5743611 TLR1 7096 4 38622780 NM_003263 NP_003254 C/G R80T minus 23715774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29807 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 7987551 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 4p14 toll-like receptor 1 29808 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 7987551 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29809 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 7987551 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29810 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 23715770 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29811 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 23715770 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4p14 toll-like receptor 1 29812 rs5743612 TLR1 7096 4 38622667 NM_003263 NP_003254 C/T H118Y minus 23715770 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 1 29813 rs5743618 TLR1 7096 4 38621214 NM_003263 NP_003254 G/T S602I minus 7987559 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.25 119 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 29814 rs5743618 TLR1 7096 4 38621214 NM_003263 NP_003254 G/T S602I minus 7987559 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.25 119 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 29815 rs5743618 TLR1 7096 4 38621214 NM_003263 NP_003254 G/T S602I minus 7987559 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 119 "by doubleHit,freq,cluster" 4p14 toll-like receptor 1 29816 rs5743619 TLR1 7096 4 38621127 NM_003263 NP_003254 G/T L631R minus 7987560 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 114 HapMap 4p14 toll-like receptor 1 29817 rs5743619 TLR1 7096 4 38621127 NM_003263 NP_003254 G/T L631R minus 7987560 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 HapMap 4p14 toll-like receptor 1 29818 rs5743619 TLR1 7096 4 38621127 NM_003263 NP_003254 G/T L631R minus 7987560 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 HapMap 4p14 toll-like receptor 1 29819 rs5743619 TLR1 7096 4 38621127 NM_003263 NP_003254 G/T L631R minus 7987560 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 114 HapMap 4p14 toll-like receptor 1 29820 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 7987620 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29821 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 7987620 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29822 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 7987620 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29823 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 15356075 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29824 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 15356075 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29825 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 15356075 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29826 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 23479655 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29827 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 23479655 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29828 rs5743649 LY86 9450 6 6571578 NM_004271 NP_004262 C/T S93P plus 23479655 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29829 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 7987623 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29830 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 7987623 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 0.03 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29831 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 7987623 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29832 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 15356078 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29833 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 15356078 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 0.03 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29834 rs5743651 LY86 9450 6 6594866 NM_004271 NP_004262 A/G Y121C plus 15356078 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 6p24.3 lymphocyte antigen 86 29835 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 7987649 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29836 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 7987649 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29837 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 7987649 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29838 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 23572894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29839 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 23572894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29840 rs5743673 IL18BP 10068 11 71390101 NM_005699 NP_005690 A/G R119Q plus 23572894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29841 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 7987649 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29842 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 7987649 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29843 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 7987649 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29844 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 23572894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29845 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 23572894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29846 rs5743673 IL18BP 10068 11 71390101 NM_173042 NP_766630 A/G R119Q plus 23572894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29847 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 7987649 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29848 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 7987649 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29849 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 7987649 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29850 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 23572894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29851 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 23572894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29852 rs5743673 IL18BP 10068 11 71390101 NM_173044 NP_766632 A/G R119Q plus 23572894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q13 interleukin 18 binding protein 29853 rs5743704 TLR2 7097 4 154983556 NM_003264 NP_003255 A/C P631H plus 7987689 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 44 0.02 114 by freq 4q32 toll-like receptor 2 29854 rs5743704 TLR2 7097 4 154983556 NM_003264 NP_003255 A/C P631H plus 7987689 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.03 114 by freq 4q32 toll-like receptor 2 29855 rs5743704 TLR2 7097 4 154983556 NM_003264 NP_003255 A/C P631H plus 7987689 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 114 by freq 4q32 toll-like receptor 2 29856 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 7987822 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 123 "by cluster,freq" 4p14 toll-like receptor 6 29857 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 7987822 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29858 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 7987822 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29859 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 24167823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29860 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 24167823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 4p14 toll-like receptor 6 29861 rs5743808 TLR6 10333 4 38653302 NM_006068 NP_006059 C/T I120T minus 24167823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by cluster,freq" 4p14 toll-like receptor 6 29862 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 7987823 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 4p14 toll-like receptor 6 29863 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 7987823 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29864 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 7987823 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29865 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 23715876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29866 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 23715876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by cluster,freq" 4p14 toll-like receptor 6 29867 rs5743809 TLR6 10333 4 38653080 NM_006068 NP_006059 C/T L194P minus 23715876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29868 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 7987824 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.1 123 by freq 4p14 toll-like receptor 6 29869 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 7987824 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.45 123 by freq 4p14 toll-like receptor 6 29870 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 7987824 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 3 0.5 123 by freq 4p14 toll-like receptor 6 29871 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 24650952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 by freq 4p14 toll-like receptor 6 29872 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 24650952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 by freq 4p14 toll-like receptor 6 29873 rs5743810 TLR6 10333 4 38652916 NM_006068 NP_006059 C/T S249P minus 24650952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 by freq 4p14 toll-like receptor 6 29874 rs5743813 TLR6 10333 4 38652628 NM_006068 NP_006059 C/T H345Y minus 7987827 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 114 "HapMap,freq" 4p14 toll-like receptor 6 29875 rs5743813 TLR6 10333 4 38652628 NM_006068 NP_006059 C/T H345Y minus 7987827 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 114 "HapMap,freq" 4p14 toll-like receptor 6 29876 rs5743813 TLR6 10333 4 38652628 NM_006068 NP_006059 C/T H345Y minus 7987827 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 "HapMap,freq" 4p14 toll-like receptor 6 29877 rs5743813 TLR6 10333 4 38652628 NM_006068 NP_006059 C/T H345Y minus 7987827 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 114 "HapMap,freq" 4p14 toll-like receptor 6 29878 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 7987831 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 123 "by cluster,freq" 4p14 toll-like receptor 6 29879 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 7987831 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 123 "by cluster,freq" 4p14 toll-like receptor 6 29880 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 7987831 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 "by cluster,freq" 4p14 toll-like receptor 6 29881 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 23715866 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 4p14 toll-like receptor 6 29882 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 23715866 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 4p14 toll-like receptor 6 29883 rs5743815 TLR6 10333 4 38652381 NM_006068 NP_006059 C/T V427A minus 23715866 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p14 toll-like receptor 6 29884 rs5743816 TLR6 10333 4 38652268 NM_006068 NP_006059 A/G V465I minus 7987832 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 114 by freq 4p14 toll-like receptor 6 29885 rs5743816 TLR6 10333 4 38652268 NM_006068 NP_006059 A/G V465I minus 7987832 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 by freq 4p14 toll-like receptor 6 29886 rs5743816 TLR6 10333 4 38652268 NM_006068 NP_006059 A/G V465I minus 7987832 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 4p14 toll-like receptor 6 29887 rs5743817 TLR6 10333 4 38652241 NM_006068 NP_006059 A/G A474T minus 7987833 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 114 by freq 4p14 toll-like receptor 6 29888 rs5743817 TLR6 10333 4 38652241 NM_006068 NP_006059 A/G A474T minus 7987833 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 by freq 4p14 toll-like receptor 6 29889 rs5743817 TLR6 10333 4 38652241 NM_006068 NP_006059 A/G A474T minus 7987833 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 4p14 toll-like receptor 6 29890 rs5743842 TLR9 54106 3 52233359 NM_017442 NP_059138 C/T R5C minus 7987864 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 114 "HapMap,freq" 3p21.3 toll-like receptor 9 29891 rs5743842 TLR9 54106 3 52233359 NM_017442 NP_059138 C/T R5C minus 7987864 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 "HapMap,freq" 3p21.3 toll-like receptor 9 29892 rs5743842 TLR9 54106 3 52233359 NM_017442 NP_059138 C/T R5C minus 7987864 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 "HapMap,freq" 3p21.3 toll-like receptor 9 29893 rs5743842 TLR9 54106 3 52233359 NM_017442 NP_059138 C/T R5C minus 7987864 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 114 "HapMap,freq" 3p21.3 toll-like receptor 9 29894 rs5743845 TLR9 54106 3 52230784 NM_017442 NP_059138 A/G R863Q minus 7987868 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 114 HapMap 3p21.3 toll-like receptor 9 29895 rs5743845 TLR9 54106 3 52230784 NM_017442 NP_059138 A/G R863Q minus 7987868 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 HapMap 3p21.3 toll-like receptor 9 29896 rs5743845 TLR9 54106 3 52230784 NM_017442 NP_059138 A/G R863Q minus 7987868 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 HapMap 3p21.3 toll-like receptor 9 29897 rs5743845 TLR9 54106 3 52230784 NM_017442 NP_059138 A/G R863Q minus 7987868 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 114 HapMap 3p21.3 toll-like receptor 9 29898 rs5744015 TOLLIP 54472 11 1255006 NM_019009 NP_061882 G/T A222S minus 7988051 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 114 by freq 11p toll interacting protein 29899 rs5744015 TOLLIP 54472 11 1255006 NM_019009 NP_061882 G/T A222S minus 7988051 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.13 114 by freq 11p toll interacting protein 29900 rs5744015 TOLLIP 54472 11 1255006 NM_019009 NP_061882 G/T A222S minus 7988051 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 114 by freq 11p toll interacting protein 29901 rs5744166 TLR5 7100 1 2901399 NM_003268 NP_003259 C/G P112A minus 7988258 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 114 by freq 1q41-q42 toll-like receptor 5 29902 rs5744166 TLR5 7100 1 2901399 NM_003268 NP_003259 C/G P112A minus 7988258 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 114 by freq 1q41-q42 toll-like receptor 5 29903 rs5744166 TLR5 7100 1 2901399 NM_003268 NP_003259 C/G P112A minus 7988258 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 1q41-q42 toll-like receptor 5 29904 rs5744168 TLR5 7100 1 2900559 NM_003268 NP_003259 C/T R392X minus 7988260 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 114 by freq 1q41-q42 toll-like receptor 5 29905 rs5744168 TLR5 7100 1 2900559 NM_003268 NP_003259 C/T R392X minus 7988260 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.08 114 by freq 1q41-q42 toll-like receptor 5 29906 rs5744168 TLR5 7100 1 2900559 NM_003268 NP_003259 C/T R392X minus 7988260 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 114 by freq 1q41-q42 toll-like receptor 5 29907 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 7988267 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.21 123 by freq 1q41-q42 toll-like receptor 5 29908 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 7988267 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.38 123 by freq 1q41-q42 toll-like receptor 5 29909 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 7988267 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 123 by freq 1q41-q42 toll-like receptor 5 29910 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 24600729 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.36 123 by freq 1q41-q42 toll-like receptor 5 29911 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 24600729 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.27 123 by freq 1q41-q42 toll-like receptor 5 29912 rs5744174 TLR5 7100 1 2899887 NM_003268 NP_003259 C/T F616L minus 24600729 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 1q41-q42 toll-like receptor 5 29913 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 7988324 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.21 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29914 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 7988324 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 0.03 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29915 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 7988324 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29916 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 16215301 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.21 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29917 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 16215301 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.03 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29918 rs5744204 LBP 3929 20 36416225 NM_004139 NP_004130 A/G V166M plus 16215301 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29919 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 7988356 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29920 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 7988356 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.08 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29921 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 7988356 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29922 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 16215378 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29923 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 16215378 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29924 rs5744212 LBP 3929 20 36431086 NM_004139 NP_004130 C/T L339F plus 16215378 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 20q11.23-q12 lipopolysaccharide binding protein 29925 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 7988655 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29926 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 7988655 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29927 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 7988655 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29928 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 23192139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29929 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 23192139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29930 rs5744409 CLCA1 1179 1 86673247 NM_001285 NP_001276 C/T Y661H plus 23192139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p31-p22 "chloride channel, calcium activated, family member 1" 29931 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 7988729 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.02 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29932 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 7988729 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.15 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29933 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 7988729 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29934 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 24322566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29935 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 24322566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29936 rs5744463 LY64 4064 5 66528168 NM_005582 NP_005573 C/G V20L minus 24322566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 29937 rs5744751 POLE 5426 12 131864345 NM_006231 NP_006222 C/T A252V minus 7989040 693 EGP_SNPS PDR90 NIHPDR 174 0.05 120 "by doubleHit,freq,cluster" 12q24.3 "polymerase (DNA directed), epsilon" 29938 rs5744760 POLE 5426 12 131863043 NM_006231 NP_006222 A/G N336S minus 7989050 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29939 rs5744760 POLE 5426 12 131863043 NM_006231 NP_006222 A/G N336S minus 23501586 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29940 rs5744760 POLE 5426 12 131863043 NM_006231 NP_006222 A/G N336S minus 23501586 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29941 rs5744760 POLE 5426 12 131863043 NM_006231 NP_006222 A/G N336S minus 23501586 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29942 rs5744799 POLE 5426 12 131855382 NM_006231 NP_006222 A/T F695I minus 7989091 693 EGP_SNPS PDR90 NIHPDR 176 0.02 114 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29943 rs5744933 POLE 5426 12 131830879 NM_006231 NP_006222 A/G Y1395C minus 7989234 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29944 rs5744933 POLE 5426 12 131830879 NM_006231 NP_006222 A/G Y1395C minus 23500559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29945 rs5744933 POLE 5426 12 131830879 NM_006231 NP_006222 A/G Y1395C minus 23500559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29946 rs5744933 POLE 5426 12 131830879 NM_006231 NP_006222 A/G Y1395C minus 23500559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29947 rs5744934 POLE 5426 12 131830876 NM_006231 NP_006222 A/G N1396S minus 7989235 693 EGP_SNPS PDR90 NIHPDR 180 0.13 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29948 rs5744934 POLE 5426 12 131830876 NM_006231 NP_006222 A/G N1396S minus 23500549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29949 rs5744934 POLE 5426 12 131830876 NM_006231 NP_006222 A/G N1396S minus 23500549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29950 rs5744934 POLE 5426 12 131830876 NM_006231 NP_006222 A/G N1396S minus 23500549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29951 rs5744935 POLE 5426 12 131830868 NM_006231 NP_006222 C/G E1399Q minus 7989236 693 EGP_SNPS PDR90 NIHPDR 180 0.01 114 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29952 rs5745021 POLE 5426 12 131819617 NM_006231 NP_006222 C/T A2040V minus 7989329 693 EGP_SNPS PDR90 NIHPDR 166 0.01 114 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29953 rs5745068 POLE 5426 12 131813090 NM_006231 NP_006222 A/G R2165H minus 7989377 693 EGP_SNPS PDR90 NIHPDR 174 0.01 114 by freq 12q24.3 "polymerase (DNA directed), epsilon" 29954 rs5745324 MSH4 4438 1 75981460 NM_002440 NP_002431 A/G A90T plus 7989700 693 EGP_SNPS PDR90 NIHPDR 176 0.02 114 by freq 1p31 mutS homolog 4 (E. coli) 29955 rs5745325 MSH4 4438 1 75981481 NM_002440 NP_002431 A/G A97T plus 7989701 693 EGP_SNPS PDR90 NIHPDR 176 0.19 123 "by doubleHit,freq,cluster" 1p31 mutS homolog 4 (E. coli) 29956 rs5745325 MSH4 4438 1 75981481 NM_002440 NP_002431 A/G A97T plus 24274892 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 1p31 mutS homolog 4 (E. coli) 29957 rs5745325 MSH4 4438 1 75981481 NM_002440 NP_002431 A/G A97T plus 24274892 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 1p31 mutS homolog 4 (E. coli) 29958 rs5745325 MSH4 4438 1 75981481 NM_002440 NP_002431 A/G A97T plus 24274892 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 1p31 mutS homolog 4 (E. coli) 29959 rs5745549 MSH4 4438 1 76090523 NM_002440 NP_002431 A/G S914N plus 7989953 693 EGP_SNPS PDR90 NIHPDR 180 0.03 123 "by cluster,freq" 1p31 mutS homolog 4 (E. coli) 29960 rs5745549 MSH4 4438 1 76090523 NM_002440 NP_002431 A/G S914N plus 23202526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1p31 mutS homolog 4 (E. coli) 29961 rs5745549 MSH4 4438 1 76090523 NM_002440 NP_002431 A/G S914N plus 23202526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 1p31 mutS homolog 4 (E. coli) 29962 rs5745549 MSH4 4438 1 76090523 NM_002440 NP_002431 A/G S914N plus 23202526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 1p31 mutS homolog 4 (E. coli) 29963 rs5745687 HGF 3082 7 81003702 NM_000601 NP_000592 A/G E304K minus 7990318 693 EGP_SNPS PDR90 NIHPDR 158 0.02 114 by freq 7q21.1 hepatocyte growth factor (hepapoietin A; scatter factor) 29964 rs5745926 NEIL1 79661 15 73433168 NM_024608 NP_078884 A/G D252N plus 7990585 693 EGP_SNPS PDR90 NIHPDR 168 0.01 123 "HapMap,freq,cluster" 15q23 nei endonuclease VIII-like 1 (E. coli) 29965 rs5745926 NEIL1 79661 15 73433168 NM_024608 NP_078884 A/G D252N plus 7990585 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 15q23 nei endonuclease VIII-like 1 (E. coli) 29966 rs5745926 NEIL1 79661 15 73433168 NM_024608 NP_078884 A/G D252N plus 23426840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 15q23 nei endonuclease VIII-like 1 (E. coli) 29967 rs5745926 NEIL1 79661 15 73433168 NM_024608 NP_078884 A/G D252N plus 23426840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 15q23 nei endonuclease VIII-like 1 (E. coli) 29968 rs5745926 NEIL1 79661 15 73433168 NM_024608 NP_078884 A/G D252N plus 23426840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 15q23 nei endonuclease VIII-like 1 (E. coli) 29969 rs5746025 TNFRSF1B 7133 1 12187193 NM_001066 NP_001057 A/G V187M plus 7990726 693 EGP_SNPS PDR90 NIHPDR 172 0.02 123 "by cluster,freq" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29970 rs5746025 TNFRSF1B 7133 1 12187193 NM_001066 NP_001057 A/G V187M plus 23163432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29971 rs5746025 TNFRSF1B 7133 1 12187193 NM_001066 NP_001057 A/G V187M plus 23163432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29972 rs5746025 TNFRSF1B 7133 1 12187193 NM_001066 NP_001057 A/G V187M plus 23163432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29973 rs5746026 TNFRSF1B 7133 1 12187328 NM_001066 NP_001057 A/G E232K plus 7990728 693 EGP_SNPS PDR90 NIHPDR 174 0.02 123 by freq 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29974 rs5746026 TNFRSF1B 7133 1 12187328 NM_001066 NP_001057 A/G E232K plus 23845247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29975 rs5746026 TNFRSF1B 7133 1 12187328 NM_001066 NP_001057 A/G E232K plus 23845247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29976 rs5746026 TNFRSF1B 7133 1 12187328 NM_001066 NP_001057 A/G E232K plus 23845247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 1B" 29977 rs5746129 SOD2 6648 6 160076354 NM_000636 NP_000627 C/T R156W minus 7990860 693 EGP_SNPS PDR90 NIHPDR 180 0.01 114 by freq 6q25.3 "superoxide dismutase 2, mitochondrial" 29978 rs5748469 TXNRD2 10587 22 18281653 NM_006440 NP_006431 A/C A66S plus 24702104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 22q11.21 thioredoxin reductase 2 29979 rs5748469 TXNRD2 10587 22 18281653 NM_006440 NP_006431 A/C A66S plus 24702104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 by freq 22q11.21 thioredoxin reductase 2 29980 rs5748469 TXNRD2 10587 22 18281653 NM_006440 NP_006431 A/C A66S plus 24702104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 22q11.21 thioredoxin reductase 2 29981 rs5748469 TXNRD2 10587 22 18281653 NM_145748 NP_665691 A/C A36S plus 24702104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 22q11.21 thioredoxin reductase 2 29982 rs5748469 TXNRD2 10587 22 18281653 NM_145748 NP_665691 A/C A36S plus 24702104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 by freq 22q11.21 thioredoxin reductase 2 29983 rs5748469 TXNRD2 10587 22 18281653 NM_145748 NP_665691 A/C A36S plus 24702104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 22q11.21 thioredoxin reductase 2 29984 rs5758651 TCF20 6942 22 40933646 NM_005650 NP_005641 C/T S722G plus 24086543 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29985 rs5758651 TCF20 6942 22 40933646 NM_005650 NP_005641 C/T S722G plus 24086543 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29986 rs5758651 TCF20 6942 22 40933646 NM_005650 NP_005641 C/T S722G plus 24086543 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29987 rs5758651 TCF20 6942 22 40933646 NM_181492 NP_852469 C/T S722G plus 24086543 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29988 rs5758651 TCF20 6942 22 40933646 NM_181492 NP_852469 C/T S722G plus 24086543 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29989 rs5758651 TCF20 6942 22 40933646 NM_181492 NP_852469 C/T S722G plus 24086543 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by cluster,freq" 22q13.3 transcription factor 20 (AR1) 29990 rs5759612 RAB36 9609 22 21827724 NM_004914 NP_004905 A/G N308D plus 23603441 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 22q11.22 "RAB36, member RAS oncogene family" 29991 rs5759612 RAB36 9609 22 21827724 NM_004914 NP_004905 A/G N308D plus 23603441 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 22q11.22 "RAB36, member RAS oncogene family" 29992 rs5759612 RAB36 9609 22 21827724 NM_004914 NP_004905 A/G N308D plus 23603441 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 22q11.22 "RAB36, member RAS oncogene family" 29993 rs5761268 MYO18B 84700 22 24564404 NM_032608 NP_115997 A/C H1119Q plus 8014665 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 29994 rs5761268 MYO18B 84700 22 24564404 NM_032608 NP_115997 A/C H1119Q plus 23623194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 29995 rs5761268 MYO18B 84700 22 24564404 NM_032608 NP_115997 A/C H1119Q plus 23623194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 29996 rs5761268 MYO18B 84700 22 24564404 NM_032608 NP_115997 A/C H1119Q plus 23623194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 22q11.2-q12.1 myosin XVIIIB 29997 rs5764698 SMC1L2 27127 22 44070520 NM_148674 NP_683515 G/T L1051M plus 24571168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 29998 rs5764698 SMC1L2 27127 22 44070520 NM_148674 NP_683515 G/T L1051M plus 24571168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 29999 rs5764698 SMC1L2 27127 22 44070520 NM_148674 NP_683515 G/T L1051M plus 24571168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 30000 rs5992128 MICAL3 57553 22 16729337 XM_032997 XP_032997 G/T M778L plus 24545767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by doubleHit,cluster" 22q11.21 flavoprotein oxidoreductase MICAL3 30001 rs5992128 MICAL3 57553 22 16729337 XM_032997 XP_032997 G/T M778L plus 24545767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by doubleHit,cluster" 22q11.21 flavoprotein oxidoreductase MICAL3 30002 rs5992128 MICAL3 57553 22 16729337 XM_032997 XP_032997 G/T M778L plus 24545767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,cluster" 22q11.21 flavoprotein oxidoreductase MICAL3 30003 rs5995649 APOBEC3B 9582 22 37706579 NM_004900 NP_004891 A/C T146K plus 23558494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B" 30004 rs5995649 APOBEC3B 9582 22 37706579 NM_004900 NP_004891 A/C T146K plus 23558494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B" 30005 rs5995649 APOBEC3B 9582 22 37706579 NM_004900 NP_004891 A/C T146K plus 23558494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.03 123 "by cluster,freq" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B" 30006 rs5995720 VPREB1 7441 22 20924259 NM_007128 NP_009059 A/G E132K plus 16359760 649 FHCRC POPU1 USA (20) 40 0.15 121 "by doubleHit,freq,cluster" 22q11.22 pre-B lymphocyte gene 1 30007 rs5995720 VPREB1 7441 22 20924259 NM_007128 NP_009059 A/G E132K plus 16359763 649 FHCRC POPU1 USA (20) 40 0.15 121 "by doubleHit,freq,cluster" 22q11.22 pre-B lymphocyte gene 1 30008 rs5998478 BPIL2 254240 22 31136506 NM_174932 NP_777592 A/G S451P plus 24592682 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 30009 rs5998478 BPIL2 254240 22 31136506 NM_174932 NP_777592 A/G S451P plus 24592682 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 30010 rs5998478 BPIL2 254240 22 31136506 NM_174932 NP_777592 A/G S451P plus 24592682 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 22q12.3 bactericidal/permeability-increasing protein-like 2 30011 rs6004350 RUTBC2 129049 22 23618709 XM_059318 XP_059318 A/C T661P plus 23614799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 30012 rs6004350 RUTBC2 129049 22 23618709 XM_059318 XP_059318 A/C T661P plus 23614799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 30013 rs6004350 RUTBC2 129049 22 23618709 XM_059318 XP_059318 A/C T661P plus 23614799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q11.23 RUN and TBC1 domain containing 2 30014 rs6004901 MYO18B 84700 22 24747678 NM_032608 NP_115997 C/G G2395A plus 23557104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 30015 rs6004901 MYO18B 84700 22 24747678 NM_032608 NP_115997 C/G G2395A plus 23557104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 30016 rs6004901 MYO18B 84700 22 24747678 NM_032608 NP_115997 C/G G2395A plus 23557104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 30017 rs6007897 CELSR1 9620 22 45101040 NM_014246 NP_055061 C/T T2268A plus 10998850 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 30018 rs6007897 CELSR1 9620 22 45101040 NM_014246 NP_055061 C/T T2268A plus 23613953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 30019 rs6007897 CELSR1 9620 22 45101040 NM_014246 NP_055061 C/T T2268A plus 23613953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 30020 rs6007897 CELSR1 9620 22 45101040 NM_014246 NP_055061 C/T T2268A plus 23613953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 22q13.3 "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)" 30021 rs6015609 CDH26 60437 20 57991410 NM_177980 NP_817089 C/T I144T plus 8316177 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,freq,cluster" 20q13.2-q13.33 cadherin-like 26 30022 rs6015609 CDH26 60437 20 57991410 NM_177980 NP_817089 C/T I144T plus 23783608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,freq,cluster" 20q13.2-q13.33 cadherin-like 26 30023 rs6015609 CDH26 60437 20 57991410 NM_177980 NP_817089 C/T I144T plus 23783608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 20q13.2-q13.33 cadherin-like 26 30024 rs6015609 CDH26 60437 20 57991410 NM_177980 NP_817089 C/T I144T plus 23783608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 20q13.2-q13.33 cadherin-like 26 30025 rs6018008 SLC2A10 81031 20 44795806 NM_030777 NP_110404 A/G T518A plus 23579905 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 20q13.1 "solute carrier family 2 (facilitated glucose transporter), member 10" 30026 rs6018008 SLC2A10 81031 20 44795806 NM_030777 NP_110404 A/G T518A plus 23579905 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 20q13.1 "solute carrier family 2 (facilitated glucose transporter), member 10" 30027 rs6018008 SLC2A10 81031 20 44795806 NM_030777 NP_110404 A/G T518A plus 23579905 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 20q13.1 "solute carrier family 2 (facilitated glucose transporter), member 10" 30028 rs6022903 BCAS1 8537 20 52045956 NM_003657 NP_003648 C/T G255E plus 23590998 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 30029 rs6022903 BCAS1 8537 20 52045956 NM_003657 NP_003648 C/T G255E plus 23590998 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 30030 rs6022903 BCAS1 8537 20 52045956 NM_003657 NP_003648 C/T G255E plus 23590998 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 20q13.2-q13.3 breast carcinoma amplified sequence 1 30031 rs6032606 ZNF335 63925 20 44029614 NM_022095 NP_071378 C/G S294T plus 8338692 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.06 123 "HapMap,doubleHit,freq,cluster" 20q11.21-q13.12 zinc finger protein 335 30032 rs6032606 ZNF335 63925 20 44029614 NM_022095 NP_071378 C/G S294T plus 24084260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 20q11.21-q13.12 zinc finger protein 335 30033 rs6032606 ZNF335 63925 20 44029614 NM_022095 NP_071378 C/G S294T plus 24084260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 20q11.21-q13.12 zinc finger protein 335 30034 rs6032606 ZNF335 63925 20 44029614 NM_022095 NP_071378 C/G S294T plus 24084260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 20q11.21-q13.12 zinc finger protein 335 30035 rs6037651 SN 6614 20 3634436 NM_023068 NP_075556 C/T V221M plus 24497154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq" 20p13 sialoadhesin 30036 rs6037651 SN 6614 20 3634436 NM_023068 NP_075556 C/T V221M plus 24497154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq" 20p13 sialoadhesin 30037 rs6037651 SN 6614 20 3634436 NM_023068 NP_075556 C/T V221M plus 24497154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq" 20p13 sialoadhesin 30038 rs6043409 SIRPB2 55423 20 1564206 NM_018556 NP_061026 A/G V230A plus 8353298 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 121 "HapMap,freq,cluster" 20p13 signal-regulatory protein beta 2 30039 rs6048760 ZNF336 64412 20 23293844 NM_022482 NP_071927 A/C Q275P plus 24690495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 20p12.3-p11.21 zinc finger protein 336 30040 rs6048760 ZNF336 64412 20 23293844 NM_022482 NP_071927 A/C Q275P plus 24690495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 20p12.3-p11.21 zinc finger protein 336 30041 rs6048760 ZNF336 64412 20 23293844 NM_022482 NP_071927 A/C Q275P plus 24690495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 20p12.3-p11.21 zinc finger protein 336 30042 rs6050063 TMC2 117532 20 2487387 NM_080751 NP_542789 A/G R107K plus 8362102 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.36 121 "HapMap,freq,cluster" 20p13 transmembrane channel-like 2 30043 rs6050249 ACAS2L 84532 20 24942289 NM_032501 NP_115890 C/T V488M plus 23665053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 20p11.23-p11.21 acetyl-Coenzyme A synthetase 2 (AMP forming)-like 30044 rs6050249 ACAS2L 84532 20 24942289 NM_032501 NP_115890 C/T V488M plus 23665053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.22 123 "by doubleHit,freq,cluster" 20p11.23-p11.21 acetyl-Coenzyme A synthetase 2 (AMP forming)-like 30045 rs6050249 ACAS2L 84532 20 24942289 NM_032501 NP_115890 C/T V488M plus 23665053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 20p11.23-p11.21 acetyl-Coenzyme A synthetase 2 (AMP forming)-like 30046 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 8379349 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30047 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 14871695 901 AFFY AfAm 12 0.17 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30048 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 14871695 902 AFFY Caucasian 24 0.46 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30049 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 14871695 903 AFFY Asian 10 0.2 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30050 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 14871695 904 AFFY CEPH 12 0.33 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30051 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 14871695 905 AFFY PDpanel 44 0.25 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30052 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 24696222 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30053 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 24696222 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30054 rs6063377 DDX27 55661 20 47292624 NM_017895 NP_060365 A/G G766S plus 24696222 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 30055 rs6063966 ZNF217 7764 20 51626495 NM_006526 NP_006517 C/T V739I plus 23588126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 20q13.2 zinc finger protein 217 30056 rs6063966 ZNF217 7764 20 51626495 NM_006526 NP_006517 C/T V739I plus 23588126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 20q13.2 zinc finger protein 217 30057 rs6063966 ZNF217 7764 20 51626495 NM_006526 NP_006517 C/T V739I plus 23588126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 20q13.2 zinc finger protein 217 30058 rs6077510 PLCB4 5332 20 9236522 NM_000933 NP_000924 A/G A21T plus 24087344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30059 rs6077510 PLCB4 5332 20 9236522 NM_000933 NP_000924 A/G A21T plus 24087344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30060 rs6077510 PLCB4 5332 20 9236522 NM_000933 NP_000924 A/G A21T plus 24087344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30061 rs6077510 PLCB4 5332 20 9236522 NM_182797 NP_877949 A/G A21T plus 24087344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30062 rs6077510 PLCB4 5332 20 9236522 NM_182797 NP_877949 A/G A21T plus 24087344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30063 rs6077510 PLCB4 5332 20 9236522 NM_182797 NP_877949 A/G A21T plus 24087344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 20p12 "phospholipase C, beta 4" 30064 rs6080719 BFSP1 631 20 17425592 NM_001195 NP_001186 C/T G345S plus 8401763 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 114 "HapMap,doubleHit,freq" 20p11.23-p12.1 "beaded filament structural protein 1, filensin" 30065 rs6088066 BPIL1 80341 20 31060133 NM_025227 NP_079503 A/T K31M plus 8411129 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.34 123 "HapMap,freq" 20q11.22 bactericidal/permeability-increasing protein-like 1 30066 rs6088066 BPIL1 80341 20 31060133 NM_025227 NP_079503 A/T K31M plus 24533707 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.03 123 "HapMap,freq" 20q11.22 bactericidal/permeability-increasing protein-like 1 30067 rs6088066 BPIL1 80341 20 31060133 NM_025227 NP_079503 A/T K31M plus 24533707 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq" 20q11.22 bactericidal/permeability-increasing protein-like 1 30068 rs6088066 BPIL1 80341 20 31060133 NM_025227 NP_079503 A/T K31M plus 24533707 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 20q11.22 bactericidal/permeability-increasing protein-like 1 30069 rs6091375 SALL4 57167 20 49840037 NM_020436 NP_065169 G/T I798L plus 23784909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 20q13.13-q13.2 sal-like 4 (Drosophila) 30070 rs6091375 SALL4 57167 20 49840037 NM_020436 NP_065169 G/T I798L plus 23784909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 20q13.13-q13.2 sal-like 4 (Drosophila) 30071 rs6091375 SALL4 57167 20 49840037 NM_020436 NP_065169 G/T I798L plus 23784909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q13.13-q13.2 sal-like 4 (Drosophila) 30072 rs6135876 OTOR 56914 20 16677138 NM_020157 NP_064542 C/T L31P plus 8467288 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 123 "HapMap,doubleHit,freq,cluster" 20p12.1-p11.23 otoraplin 30073 rs6135876 OTOR 56914 20 16677138 NM_020157 NP_064542 C/T L31P plus 24121124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 20p12.1-p11.23 otoraplin 30074 rs6135876 OTOR 56914 20 16677138 NM_020157 NP_064542 C/T L31P plus 24121124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 20p12.1-p11.23 otoraplin 30075 rs6135876 OTOR 56914 20 16677138 NM_020157 NP_064542 C/T L31P plus 24121124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 20p12.1-p11.23 otoraplin 30076 rs6138482 VSX1 30813 20 25007442 NM_199425 NP_955457 C/T R217H plus 8470331 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.21 114 "HapMap,doubleHit,freq" 20p11.23-p11.22 "visual system homeobox 1 homolog, CHX10-like (zebrafish)" 30077 rs6151415 ARSA 410 22 49355505 NM_000487 NP_000478 G/T W193C minus 8485016 693 EGP_SNPS PDR90 NIHPDR 174 0.03 114 by freq 22q13.33 arylsulfatase A 30078 rs6151428 ARSA 410 22 49353754 NM_000487 NP_000478 A/G R496H minus 8485036 693 EGP_SNPS PDR90 NIHPDR 174 0.03 114 "HapMap,freq" 22q13.33 arylsulfatase A 30079 rs6151428 ARSA 410 22 49353754 NM_000487 NP_000478 A/G R496H minus 8485036 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 114 "HapMap,freq" 22q13.33 arylsulfatase A 30080 rs6413413 ADH1B 125 4 100596462 NM_000668 NP_000659 A/T T60S minus 5586190 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 117 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 30081 rs6413413 ADH1B 125 4 100596462 NM_000668 NP_000659 A/T T60S minus 5586190 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.05 117 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 30082 rs6413413 ADH1B 125 4 100596462 NM_000668 NP_000659 A/T T60S minus 5586190 776 SNP500CANCER AFR1 African / African-American (24) 46 1 117 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 30083 rs6413413 ADH1B 125 4 100596462 NM_000668 NP_000659 A/T T60S minus 5586190 777 SNP500CANCER HISP1 Hispanic (23) 46 1 117 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 30084 rs6413413 ADH1B 125 4 100596462 NM_000668 NP_000659 A/T T60S minus 5586190 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 117 "by cluster,freq" 4q21-q23 "alcohol dehydrogenase IB (class I), beta polypeptide" 30085 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 5586441 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.04 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30086 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 5586441 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30087 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 5586441 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30088 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 5586441 777 SNP500CANCER HISP1 Hispanic (23) 46 0.11 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30089 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 5586441 778 SNP500CANCER PAC1 Pacific Rim (24) 46 1 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30090 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 23588573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30091 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 23588573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30092 rs6413419 CYP2E1 1571 10 135234556 NM_000773 NP_000764 A/G V179I plus 23588573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q24.3-qter "cytochrome P450, family 2, subfamily E, polypeptide 1" 30093 rs6413438 CYP2C19 1557 10 96531605 NM_000769 NP_000760 C/T P227L plus 7986227 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 by freq 10q24.1-q24.3 "cytochrome P450, family 2, subfamily C, polypeptide 19" 30094 rs6413438 CYP2C19 1557 10 96531605 NM_000769 NP_000760 C/T P227L plus 7986227 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 by freq 10q24.1-q24.3 "cytochrome P450, family 2, subfamily C, polypeptide 19" 30095 rs6413438 CYP2C19 1557 10 96531605 NM_000769 NP_000760 C/T P227L plus 7986227 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 by freq 10q24.1-q24.3 "cytochrome P450, family 2, subfamily C, polypeptide 19" 30096 rs6413438 CYP2C19 1557 10 96531605 NM_000769 NP_000760 C/T P227L plus 7986227 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 by freq 10q24.1-q24.3 "cytochrome P450, family 2, subfamily C, polypeptide 19" 30097 rs6413438 CYP2C19 1557 10 96531605 NM_000769 NP_000760 C/T P227L plus 7986227 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 by freq 10q24.1-q24.3 "cytochrome P450, family 2, subfamily C, polypeptide 19" 30098 rs6413462 CBR1 873 21 36364545 NM_001757 NP_001748 A/G V88I plus 8819695 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 by freq 21q22.13 carbonyl reductase 1 30099 rs6413462 CBR1 873 21 36364545 NM_001757 NP_001748 A/G V88I plus 8819695 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 by freq 21q22.13 carbonyl reductase 1 30100 rs6413462 CBR1 873 21 36364545 NM_001757 NP_001748 A/G V88I plus 8819695 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 by freq 21q22.13 carbonyl reductase 1 30101 rs6413462 CBR1 873 21 36364545 NM_001757 NP_001748 A/G V88I plus 8819695 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 by freq 21q22.13 carbonyl reductase 1 30102 rs6413462 CBR1 873 21 36364545 NM_001757 NP_001748 A/G V88I plus 8819695 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 by freq 21q22.13 carbonyl reductase 1 30103 rs6413474 CYP2A6 1548 19 46041599 NM_000762 NP_000753 A/G K476R minus 8819721 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 30104 rs6413474 CYP2A6 1548 19 46041599 NM_000762 NP_000753 A/G K476R minus 8819721 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 30105 rs6413474 CYP2A6 1548 19 46041599 NM_000762 NP_000753 A/G K476R minus 8819721 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 30106 rs6413474 CYP2A6 1548 19 46041599 NM_000762 NP_000753 A/G K476R minus 8819721 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 30107 rs6413474 CYP2A6 1548 19 46041599 NM_000762 NP_000753 A/G K476R minus 8819721 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 116 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 30108 rs6413478 EDN1 1906 6 12404203 NM_001955 NP_001946 A/G V186I plus 8819732 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 by freq 6p24.1 endothelin 1 30109 rs6413478 EDN1 1906 6 12404203 NM_001955 NP_001946 A/G V186I plus 8819732 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 by freq 6p24.1 endothelin 1 30110 rs6413478 EDN1 1906 6 12404203 NM_001955 NP_001946 A/G V186I plus 8819732 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 by freq 6p24.1 endothelin 1 30111 rs6413478 EDN1 1906 6 12404203 NM_001955 NP_001946 A/G V186I plus 8819732 777 SNP500CANCER HISP1 Hispanic (23) 44 1 116 by freq 6p24.1 endothelin 1 30112 rs6413478 EDN1 1906 6 12404203 NM_001955 NP_001946 A/G V186I plus 8819732 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 116 by freq 6p24.1 endothelin 1 30113 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30114 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30115 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30116 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30117 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30118 rs6413484 GHR 2690 5 42735727 NM_000163 NP_000154 G/T V162F plus 8819744 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,freq" 5p13-p12 growth hormone receptor 30119 rs6413485 GRP58 2923 15 41849114 NM_005313 NP_005304 A/G K415R plus 8819746 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 116 by freq 15q15 "glucose regulated protein, 58kDa" 30120 rs6413485 GRP58 2923 15 41849114 NM_005313 NP_005304 A/G K415R plus 8819746 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 by freq 15q15 "glucose regulated protein, 58kDa" 30121 rs6413485 GRP58 2923 15 41849114 NM_005313 NP_005304 A/G K415R plus 8819746 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 by freq 15q15 "glucose regulated protein, 58kDa" 30122 rs6413485 GRP58 2923 15 41849114 NM_005313 NP_005304 A/G K415R plus 8819746 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 116 by freq 15q15 "glucose regulated protein, 58kDa" 30123 rs6413485 GRP58 2923 15 41849114 NM_005313 NP_005304 A/G K415R plus 8819746 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 by freq 15q15 "glucose regulated protein, 58kDa" 30124 rs6413489 IGF2R 3482 6 160434696 NM_000876 NP_000867 A/G R529Q plus 8819765 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 by freq 6q26 insulin-like growth factor 2 receptor 30125 rs6413489 IGF2R 3482 6 160434696 NM_000876 NP_000867 A/G R529Q plus 8819765 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 116 by freq 6q26 insulin-like growth factor 2 receptor 30126 rs6413489 IGF2R 3482 6 160434696 NM_000876 NP_000867 A/G R529Q plus 8819765 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 by freq 6q26 insulin-like growth factor 2 receptor 30127 rs6413489 IGF2R 3482 6 160434696 NM_000876 NP_000867 A/G R529Q plus 8819765 777 SNP500CANCER HISP1 Hispanic (23) 44 0.02 116 by freq 6q26 insulin-like growth factor 2 receptor 30128 rs6413489 IGF2R 3482 6 160434696 NM_000876 NP_000867 A/G R529Q plus 8819765 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 by freq 6q26 insulin-like growth factor 2 receptor 30129 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 8819768 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.01 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30130 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 8819768 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30131 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 8819768 776 SNP500CANCER AFR1 African / African-American (24) 46 0.02 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30132 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 8819768 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30133 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 8819768 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30134 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 12585801 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30135 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 23521419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30136 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 23521419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30137 rs6413491 IGF2R 3482 6 160438720 NM_000876 NP_000867 A/G A724T plus 23521419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 30138 rs6413508 NBS1 4683 8 91027599 NM_002485 NP_002476 C/T P672L minus 8819821 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 116 by freq 8q21 Nijmegen breakage syndrome 1 (nibrin) 30139 rs6413508 NBS1 4683 8 91027599 NM_002485 NP_002476 C/T P672L minus 8819821 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 116 by freq 8q21 Nijmegen breakage syndrome 1 (nibrin) 30140 rs6413508 NBS1 4683 8 91027599 NM_002485 NP_002476 C/T P672L minus 8819821 776 SNP500CANCER AFR1 African / African-American (24) 48 1 116 by freq 8q21 Nijmegen breakage syndrome 1 (nibrin) 30141 rs6413508 NBS1 4683 8 91027599 NM_002485 NP_002476 C/T P672L minus 8819821 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 by freq 8q21 Nijmegen breakage syndrome 1 (nibrin) 30142 rs6413508 NBS1 4683 8 91027599 NM_002485 NP_002476 C/T P672L minus 8819821 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 116 by freq 8q21 Nijmegen breakage syndrome 1 (nibrin) 30143 rs6413532 SLC39A2 29986 14 20539034 NM_014579 NP_055394 A/G G129E plus 8819887 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 116 by freq 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 30144 rs6413532 SLC39A2 29986 14 20539034 NM_014579 NP_055394 A/G G129E plus 8819887 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 116 by freq 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 30145 rs6413532 SLC39A2 29986 14 20539034 NM_014579 NP_055394 A/G G129E plus 8819887 776 SNP500CANCER AFR1 African / African-American (24) 46 1 116 by freq 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 30146 rs6413532 SLC39A2 29986 14 20539034 NM_014579 NP_055394 A/G G129E plus 8819887 777 SNP500CANCER HISP1 Hispanic (23) 46 1 116 by freq 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 30147 rs6413532 SLC39A2 29986 14 20539034 NM_014579 NP_055394 A/G G129E plus 8819887 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 116 by freq 14q11.2 "solute carrier family 39 (zinc transporter), member 2" 30148 rs6416668 ABCC6 368 16 16178858 NM_001171 NP_001162 C/T M848V plus 23595951 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 30149 rs6416668 ABCC6 368 16 16178858 NM_001171 NP_001162 C/T M848V plus 23595951 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 30150 rs6416668 ABCC6 368 16 16178858 NM_001171 NP_001162 C/T M848V plus 23595951 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 30151 rs6420424 PKD1L2 114780 16 79799603 NM_182740 NP_877417 A/G R252W plus 23462869 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30152 rs6420424 PKD1L2 114780 16 79799603 NM_182740 NP_877417 A/G R252W plus 23462869 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.48 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30153 rs6420424 PKD1L2 114780 16 79799603 NM_182740 NP_877417 A/G R252W plus 23462869 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30154 rs6425977 THRAP3 9967 1 36421526 NM_005119 NP_005110 C/T A201V plus 9893643 1303 SEQUENOM CEPH CEPH (92) 92 0.07 123 "by doubleHit,freq,cluster" 1p34.3 thyroid hormone receptor associated protein 3 30155 rs6427384 IRTA2 83416 1 154321955 NM_031281 NP_112571 C/T V466I plus 23160714 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30156 rs6427384 IRTA2 83416 1 154321955 NM_031281 NP_112571 C/T V466I plus 23160714 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30157 rs6427384 IRTA2 83416 1 154321955 NM_031281 NP_112571 C/T V466I plus 23160714 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30158 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 14883599 901 AFFY AfAm 10 0.4 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30159 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 14883599 902 AFFY Caucasian 22 0.36 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30160 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 14883599 903 AFFY Asian 12 0.33 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30161 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 14883599 904 AFFY CEPH 8 0.25 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30162 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 14883599 905 AFFY PDpanel 40 0.33 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30163 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 24239001 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30164 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 24239001 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30165 rs6427504 ATP1A4 480 1 156937948 NM_144699 NP_653300 A/G G83D plus 24239001 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 30166 rs6428388 ASPM 259266 1 193843751 NM_018136 NP_060606 C/T R430G plus 23194379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 30167 rs6428388 ASPM 259266 1 193843751 NM_018136 NP_060606 C/T R430G plus 23194379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 30168 rs6428388 ASPM 259266 1 193843751 NM_018136 NP_060606 C/T R430G plus 23194379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 30169 rs6429745 ELA2B 51032 1 15557738 NM_015849 NP_056933 A/G Q177R plus 23803875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 30170 rs6429745 ELA2B 51032 1 15557738 NM_015849 NP_056933 A/G Q177R plus 23803875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 30171 rs6429745 ELA2B 51032 1 15557738 NM_015849 NP_056933 A/G Q177R plus 23803875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 1p36.13 pancreatic elastase IIB 30172 rs6429757 AGMAT 79814 1 15655156 NM_024758 NP_079034 C/G G105R plus 9837663 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 121 "HapMap,doubleHit,freq,cluster" 1p36.13 agmatine ureohydrolase (agmatinase) 30173 rs6434197 ZSWIM2 151112 2 187524213 NM_182521 NP_872327 C/T C265Y plus 9912323 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 2q32.2 "zinc finger, SWIM domain containing 2" 30174 rs6434197 ZSWIM2 151112 2 187524213 NM_182521 NP_872327 C/T C265Y plus 23185690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 2q32.2 "zinc finger, SWIM domain containing 2" 30175 rs6434197 ZSWIM2 151112 2 187524213 NM_182521 NP_872327 C/T C265Y plus 23185690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "HapMap,doubleHit,freq,cluster" 2q32.2 "zinc finger, SWIM domain containing 2" 30176 rs6434197 ZSWIM2 151112 2 187524213 NM_182521 NP_872327 C/T C265Y plus 23185690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 2q32.2 "zinc finger, SWIM domain containing 2" 30177 rs6436669 COL4A3 1285 2 227938680 NM_000091 NP_000082 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30178 rs6436669 COL4A3 1285 2 227938680 NM_031362 NP_112730 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30179 rs6436669 COL4A3 1285 2 227938680 NM_031363 NP_112731 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30180 rs6436669 COL4A3 1285 2 227938680 NM_031364 NP_112732 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30181 rs6436669 COL4A3 1285 2 227938680 NM_031365 NP_112733 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30182 rs6436669 COL4A3 1285 2 227938680 NM_031366 NP_112734 A/G E162G plus 9921615 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq,cluster" 2q36-q37 "collagen, type IV, alpha 3 (Goodpasture antigen)" 30183 rs6438544 AAT1 89876 3 120917217 NM_033364 NP_203528 C/G A207P plus 23320396 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 3q12-q13.3 AAT1-alpha 30184 rs6438544 AAT1 89876 3 120917217 NM_033364 NP_203528 C/G A207P plus 23320396 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 3q12-q13.3 AAT1-alpha 30185 rs6438544 AAT1 89876 3 120917217 NM_033364 NP_203528 C/G A207P plus 23320396 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3q12-q13.3 AAT1-alpha 30186 rs6438869 HEG 57493 3 126211316 XM_087386 XP_087386 A/G M1152T plus 10072637 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.31 123 "HapMap,doubleHit,freq,cluster" 3q21.2 HEG homolog 30187 rs6438869 HEG 57493 3 126211316 XM_087386 XP_087386 A/G M1152T plus 23938230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 3q21.2 HEG homolog 30188 rs6438869 HEG 57493 3 126211316 XM_087386 XP_087386 A/G M1152T plus 23938230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 3q21.2 HEG homolog 30189 rs6438869 HEG 57493 3 126211316 XM_087386 XP_087386 A/G M1152T plus 23938230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 3q21.2 HEG homolog 30190 rs6442089 MAP4 4134 3 47931428 NM_002375 NP_002366 C/T V628I plus 10021515 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.39 123 "HapMap,doubleHit,freq,cluster" 3p21 microtubule-associated protein 4 30191 rs6442827 CHL1 10752 3 414963 NM_006614 NP_006605 A/G I1050V plus 23330008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 30192 rs6442827 CHL1 10752 3 414963 NM_006614 NP_006605 A/G I1050V plus 23330008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 30193 rs6442827 CHL1 10752 3 414963 NM_006614 NP_006605 A/G I1050V plus 23330008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 30194 rs6446261 GPX1 2876 3 49369857 NM_000581 NP_000572 C/T A194T plus 12568571 693 EGP_SNPS PDR90 NIHPDR 180 0.02 117 "HapMap,doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 30195 rs6446261 GPX1 2876 3 49369857 NM_000581 NP_000572 C/T A194T plus 12568571 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 "HapMap,doubleHit,freq,cluster" 3p21.3 glutathione peroxidase 1 30196 rs6448389 SLC34A2 10568 4 25354468 NM_006424 NP_006415 A/G D634G plus 24378926 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 4p15.3-p15.1 "solute carrier family 34 (sodium phosphate), member 2" 30197 rs6448389 SLC34A2 10568 4 25354468 NM_006424 NP_006415 A/G D634G plus 24378926 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4p15.3-p15.1 "solute carrier family 34 (sodium phosphate), member 2" 30198 rs6448389 SLC34A2 10568 4 25354468 NM_006424 NP_006415 A/G D634G plus 24378926 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p15.3-p15.1 "solute carrier family 34 (sodium phosphate), member 2" 30199 rs6453022 RGNEF 64283 5 73112267 XM_371755 XP_371755 A/C P284Q plus 24222734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 30200 rs6453022 RGNEF 64283 5 73112267 XM_371755 XP_371755 A/C P284Q plus 24222734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 30201 rs6453022 RGNEF 64283 5 73112267 XM_371755 XP_371755 A/C P284Q plus 24222734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 5q13.3 Rho-guanine nucleotide exchange factor 30202 rs6453373 AP3B1 8546 5 77460784 NM_003664 NP_003655 A/T V585E plus 23973065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 5q14.1 "adaptor-related protein complex 3, beta 1 subunit" 30203 rs6453373 AP3B1 8546 5 77460784 NM_003664 NP_003655 A/T V585E plus 23973065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 5q14.1 "adaptor-related protein complex 3, beta 1 subunit" 30204 rs6453373 AP3B1 8546 5 77460784 NM_003664 NP_003655 A/T V585E plus 23973065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 5q14.1 "adaptor-related protein complex 3, beta 1 subunit" 30205 rs6456811 PGBD1 84547 6 28378026 NM_032507 NP_115896 C/G H806D plus 10288276 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.07 123 "HapMap,doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 30206 rs6456811 PGBD1 84547 6 28378026 NM_032507 NP_115896 C/G H806D plus 23290764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 30207 rs6456811 PGBD1 84547 6 28378026 NM_032507 NP_115896 C/G H806D plus 23290764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "HapMap,doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 30208 rs6456811 PGBD1 84547 6 28378026 NM_032507 NP_115896 C/G H806D plus 23290764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 6p21.33 piggyBac transposable element derived 1 30209 rs6456880 ZNF311 282890 6 29071227 XM_212581 XP_212581 G/T K718Q plus 24338016 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30210 rs6456880 ZNF311 282890 6 29071227 XM_212581 XP_212581 G/T K718Q plus 24338016 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30211 rs6456880 ZNF311 282890 6 29071227 XM_212581 XP_212581 G/T K718Q plus 24338016 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30212 rs6458687 MUT 4594 6 49511241 NM_000255 NP_000246 C/T I671V plus 10313461 1303 SEQUENOM CEPH CEPH (92) 92 0.26 119 "by doubleHit,freq,cluster" 6p21 methylmalonyl Coenzyme A mutase 30213 rs6459165 DST 667 6 56578057 NM_020388 NP_065121 G/T K2573Q plus 23348296 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30214 rs6459165 DST 667 6 56578057 NM_020388 NP_065121 G/T K2573Q plus 23348296 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30215 rs6459165 DST 667 6 56578057 NM_020388 NP_065121 G/T K2573Q plus 23348296 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30216 rs6459166 DST 667 6 56590760 NM_001723 NP_001714 C/G V2011L plus 24379600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30217 rs6459166 DST 667 6 56590760 NM_001723 NP_001714 C/G V2011L plus 24379600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.37 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30218 rs6459166 DST 667 6 56590760 NM_001723 NP_001714 C/G V2011L plus 24379600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30219 rs6461378 UNC84A 23353 7 654909 XM_376564 XP_376564 C/T H152Y plus 23913431 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.48 123 "by doubleHit,freq,cluster" 7p22.3 unc-84 homolog A (C. elegans) 30220 rs6461378 UNC84A 23353 7 654909 XM_376564 XP_376564 C/T H152Y plus 23913431 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 7p22.3 unc-84 homolog A (C. elegans) 30221 rs6461378 UNC84A 23353 7 654909 XM_376564 XP_376564 C/T H152Y plus 23913431 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 7p22.3 unc-84 homolog A (C. elegans) 30222 rs6461515 ABCB5 340273 7 20551886 NM_178559 NP_848654 A/G E525K plus 23975197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by doubleHit,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 30223 rs6461515 ABCB5 340273 7 20551886 NM_178559 NP_848654 A/G E525K plus 23975197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 30224 rs6461515 ABCB5 340273 7 20551886 NM_178559 NP_848654 A/G E525K plus 23975197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 30225 rs6465770 ZCWPW1 55063 7 99659362 NM_017984 NP_060454 C/T T153A plus 10352891 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,doubleHit,freq,cluster" 7q22.1 "zinc finger, CW-type with PWWP domain 1" 30226 rs6471482 CNGB3 54714 8 87748419 NM_019098 NP_061971 A/C C234W plus 24479553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 8q21-q22 cyclic nucleotide gated channel beta 3 30227 rs6471482 CNGB3 54714 8 87748419 NM_019098 NP_061971 A/C C234W plus 24479553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8q21-q22 cyclic nucleotide gated channel beta 3 30228 rs6471482 CNGB3 54714 8 87748419 NM_019098 NP_061971 A/C C234W plus 24479553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q21-q22 cyclic nucleotide gated channel beta 3 30229 rs6483617 NAV2 89797 11 19810664 NM_145117 NP_660093 A/G R109K plus 10694427 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.29 120 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 30230 rs6483617 NAV2 89797 11 19810664 NM_182964 NP_892009 A/G R109K plus 10694427 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.29 120 "HapMap,doubleHit,freq,cluster" 11p15.1 neuron navigator 2 30231 rs6483700 HRMT1L3 10196 11 20486462 NM_005788 NP_005779 A/G S508N plus 23920755 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p15.1 protein arginine N-methyltransferase 3 30232 rs6483700 HRMT1L3 10196 11 20486462 NM_005788 NP_005779 A/G S508N plus 23920755 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 11p15.1 protein arginine N-methyltransferase 3 30233 rs6483700 HRMT1L3 10196 11 20486462 NM_005788 NP_005779 A/G S508N plus 23920755 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by cluster,freq" 11p15.1 protein arginine N-methyltransferase 3 30234 rs6485702 LRP4 4038 11 46855347 XM_035037 XP_035037 C/T I1056V plus 24207566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 30235 rs6485702 LRP4 4038 11 46855347 XM_035037 XP_035037 C/T I1056V plus 24207566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 30236 rs6485702 LRP4 4038 11 46855347 XM_035037 XP_035037 C/T I1056V plus 24207566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11p11.2-p12 low density lipoprotein receptor-related protein 4 30237 rs6487451 LRMP 4033 12 25123639 NM_006152 NP_006143 A/G T38A plus 23422015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 30238 rs6487451 LRMP 4033 12 25123639 NM_006152 NP_006143 A/G T38A plus 23422015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 30239 rs6487451 LRMP 4033 12 25123639 NM_006152 NP_006143 A/G T38A plus 23422015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 30240 rs6489795 P2RX7 5027 12 120077851 NM_002562 NP_002553 C/G T357S plus 23933360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 30241 rs6489795 P2RX7 5027 12 120077851 NM_002562 NP_002553 C/G T357S plus 23933360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 30242 rs6489795 P2RX7 5027 12 120077851 NM_002562 NP_002553 C/G T357S plus 23933360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 30243 rs6495228 RYR3 6263 15 31803566 NM_001036 NP_001027 A/G G2270E plus 23661970 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 30244 rs6495228 RYR3 6263 15 31803566 NM_001036 NP_001027 A/G G2270E plus 23661970 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 30245 rs6495228 RYR3 6263 15 31803566 NM_001036 NP_001027 A/G G2270E plus 23661970 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 15q14-q15 ryanodine receptor 3 30246 rs6497759 TNRC6 27327 16 24709238 NM_014494 NP_055309 A/G A339T plus 23382113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 16p11.2 trinucleotide repeat containing 6 30247 rs6497759 TNRC6 27327 16 24709238 NM_014494 NP_055309 A/G A339T plus 23382113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 16p11.2 trinucleotide repeat containing 6 30248 rs6497759 TNRC6 27327 16 24709238 NM_014494 NP_055309 A/G A339T plus 23382113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 16p11.2 trinucleotide repeat containing 6 30249 rs6500304 ABCC12 94160 16 46692285 NM_033226 NP_150229 A/G Y1013H plus 10826457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30250 rs6500304 ABCC12 94160 16 46692285 NM_145187 NP_660188 A/G *1010Q plus 10826457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30251 rs6500304 ABCC12 94160 16 46692285 NM_145188 NP_660189 A/G L934P plus 10826457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30252 rs6500304 ABCC12 94160 16 46692285 NM_145189 NP_660190 A/G *1010Q plus 10826457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30253 rs6500304 ABCC12 94160 16 46692285 NM_145190 NP_660191 A/G *1010Q plus 10826457 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30254 rs6500305 ABCC12 94160 16 46692357 NM_033226 NP_150229 A/T T989S plus 10837312 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30255 rs6500305 ABCC12 94160 16 46692357 NM_145187 NP_660188 A/T T986S plus 10837312 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30256 rs6500305 ABCC12 94160 16 46692357 NM_145188 NP_660189 A/T H910L plus 10837312 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30257 rs6500305 ABCC12 94160 16 46692357 NM_145189 NP_660190 A/T T986S plus 10837312 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30258 rs6500305 ABCC12 94160 16 46692357 NM_145190 NP_660191 A/T T986S plus 10837312 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 30259 rs6500437 ZFP276 92822 16 88317399 NM_152287 NP_689500 C/T W188R plus 10811248 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.4 116 "HapMap,doubleHit,freq,cluster" 16q24.3 zinc finger protein 276 homolog (mouse) 30260 rs6501741 OTOP2 92736 17 70438718 NM_178160 NP_835454 G/T G465W plus 10867692 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.32 123 "HapMap,doubleHit,freq,cluster" 17q25.2 otopetrin 2 30261 rs6501867 RNF157 114804 17 71733942 XM_290732 XP_290732 C/G E390Q plus 10851912 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.06 116 "HapMap,doubleHit,freq,cluster" 17q25.3 ring finger protein 157 30262 rs6502446 TEKT3 64518 17 15156515 NM_031898 NP_114104 A/G V296A plus 23637931 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by doubleHit,freq,cluster" 17p12 tektin 3 30263 rs6502446 TEKT3 64518 17 15156515 NM_031898 NP_114104 A/G V296A plus 23637931 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 17p12 tektin 3 30264 rs6502446 TEKT3 64518 17 15156515 NM_031898 NP_114104 A/G V296A plus 23637931 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 1 123 "by doubleHit,freq,cluster" 17p12 tektin 3 30265 rs6502774 TUSC5 286753 17 1130104 NM_172367 NP_758955 C/T F20S plus 24440422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by cluster,freq" 17p13.3 tumor suppressor candidate 5 30266 rs6502774 TUSC5 286753 17 1130104 NM_172367 NP_758955 C/T F20S plus 24440422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by cluster,freq" 17p13.3 tumor suppressor candidate 5 30267 rs6502774 TUSC5 286753 17 1130104 NM_172367 NP_758955 C/T F20S plus 24440422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by cluster,freq" 17p13.3 tumor suppressor candidate 5 30268 rs6504649 XYLT2 64132 17 45792455 NM_022167 NP_071450 C/G T801R plus 24594979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.4 123 "by doubleHit,freq,cluster" 17q21.3-17q22 xylosyltransferase II 30269 rs6504649 XYLT2 64132 17 45792455 NM_022167 NP_071450 C/G T801R plus 24594979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 17q21.3-17q22 xylosyltransferase II 30270 rs6504649 XYLT2 64132 17 45792455 NM_022167 NP_071450 C/G T801R plus 24594979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 17q21.3-17q22 xylosyltransferase II 30271 rs6508750 NYD-SP11 83889 19 43071286 XM_371164 XP_371164 C/T R1583Q plus 10919516 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.37 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 30272 rs6508750 NYD-SP11 83889 19 43071286 XM_371164 XP_371164 C/T R1583Q plus 24575796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 30273 rs6508750 NYD-SP11 83889 19 43071286 XM_371164 XP_371164 C/T R1583Q plus 24575796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 30274 rs6508750 NYD-SP11 83889 19 43071286 XM_371164 XP_371164 C/T R1583Q plus 24575796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 19q13.13 NYD-SP11 protein 30275 rs6509138 ZNF223 7766 19 49262233 NM_013361 NP_037493 A/C L138I plus 10917856 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.36 116 "HapMap,doubleHit,freq,cluster" 19q13.2 zinc finger protein 223 30276 rs6509358 ELSPBP1 64100 19 53217367 NM_022142 NP_071425 A/G D215N plus 10930251 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit,cluster" 19q13.33 epididymal sperm binding protein 1 30277 rs6509544 SIGLECL1 89858 19 56695143 NM_033329 NP_201586 C/G H99Q plus 24225644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30278 rs6509544 SIGLECL1 89858 19 56695143 NM_033329 NP_201586 C/G H99Q plus 24225644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30279 rs6509544 SIGLECL1 89858 19 56695143 NM_033329 NP_201586 C/G H99Q plus 24225644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30280 rs6509544 SIGLECL1 89858 19 56695143 NM_053003 NP_443729 C/G H217Q plus 24225644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30281 rs6509544 SIGLECL1 89858 19 56695143 NM_053003 NP_443729 C/G H217Q plus 24225644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30282 rs6509544 SIGLECL1 89858 19 56695143 NM_053003 NP_443729 C/G H217Q plus 24225644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 19q13.4 SIGLEC-like 1 30283 rs6510057 ZNF543 125919 19 62529830 NM_213598 NP_998763 C/G P55A plus 24534001 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 543 30284 rs6510057 ZNF543 125919 19 62529830 NM_213598 NP_998763 C/G P55A plus 24534001 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 543 30285 rs6510057 ZNF543 125919 19 62529830 NM_213598 NP_998763 C/G P55A plus 24534001 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 543 30286 rs6510130 ZNF544 27300 19 63464391 NM_014480 NP_055295 C/G H203D plus 23563149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 544 30287 rs6510130 ZNF544 27300 19 63464391 NM_014480 NP_055295 C/G H203D plus 23563149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 544 30288 rs6510130 ZNF544 27300 19 63464391 NM_014480 NP_055295 C/G H203D plus 23563149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 544 30289 rs6511874 OR7G1 125962 19 9087192 XM_064883 XP_064883 A/G V83A plus 23812720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 30290 rs6511874 OR7G1 125962 19 9087192 XM_064883 XP_064883 A/G V83A plus 23812720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 30291 rs6511874 OR7G1 125962 19 9087192 XM_064883 XP_064883 A/G V83A plus 23812720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 30292 rs6517105 TCP10L 140290 21 32872939 NM_144659 NP_653260 C/T H145R plus 10986837 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 21q22.11 t-complex 10 (mouse)-like 30293 rs6517105 TCP10L 140290 21 32872939 NM_144659 NP_653260 C/T H145R plus 24113000 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 21q22.11 t-complex 10 (mouse)-like 30294 rs6517105 TCP10L 140290 21 32872939 NM_144659 NP_653260 C/T H145R plus 24113000 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 21q22.11 t-complex 10 (mouse)-like 30295 rs6517105 TCP10L 140290 21 32872939 NM_144659 NP_653260 C/T H145R plus 24113000 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 21q22.11 t-complex 10 (mouse)-like 30296 rs6517549 SH3BGR 6450 21 39745851 NM_007341 NP_031367 A/G D50N plus 24601701 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 21q22.3 SH3 domain binding glutamic acid-rich protein 30297 rs6517549 SH3BGR 6450 21 39745851 NM_007341 NP_031367 A/G D50N plus 24601701 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 21q22.3 SH3 domain binding glutamic acid-rich protein 30298 rs6517549 SH3BGR 6450 21 39745851 NM_007341 NP_031367 A/G D50N plus 24601701 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 21q22.3 SH3 domain binding glutamic acid-rich protein 30299 rs6518291 PCNT2 5116 21 46646016 NM_006031 NP_006022 A/G I1639V plus 23558338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 30300 rs6518291 PCNT2 5116 21 46646016 NM_006031 NP_006022 A/G I1639V plus 23558338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 30301 rs6518291 PCNT2 5116 21 46646016 NM_006031 NP_006022 A/G I1639V plus 23558338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 30302 rs6533616 LAK 80216 4 113702751 NM_025144 NP_079420 A/G N175D plus 24654991 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 30303 rs6533616 LAK 80216 4 113702751 NM_025144 NP_079420 A/G N175D plus 24654991 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 30304 rs6533616 LAK 80216 4 113702751 NM_025144 NP_079420 A/G N175D plus 24654991 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 30305 rs6537825 TRIM33 51592 1 114660323 NM_015906 NP_056990 A/G I840T plus 9845725 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by doubleHit,freq,cluster" 1p13.1 tripartite motif-containing 33 30306 rs6537825 TRIM33 51592 1 114660323 NM_033020 NP_148980 A/G I840T plus 9845725 1303 SEQUENOM CEPH CEPH (92) 92 0.12 121 "by doubleHit,freq,cluster" 1p13.1 tripartite motif-containing 33 30307 rs6540433 CR2 1380 1 204041790 NM_001877 NP_001868 A/C A1003E plus 24617496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 1q32 complement component (3d/Epstein Barr virus) receptor 2 30308 rs6540433 CR2 1380 1 204041790 NM_001877 NP_001868 A/C A1003E plus 24617496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 1q32 complement component (3d/Epstein Barr virus) receptor 2 30309 rs6540433 CR2 1380 1 204041790 NM_001877 NP_001868 A/C A1003E plus 24617496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q32 complement component (3d/Epstein Barr virus) receptor 2 30310 rs6544718 ABCG8 64241 2 44016576 NM_022437 NP_071882 C/T V632A plus 12674832 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.11 120 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 30311 rs6544718 ABCG8 64241 2 44016576 NM_022437 NP_071882 C/T V632A plus 12674832 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.31 120 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 30312 rs6544718 ABCG8 64241 2 44016576 NM_022437 NP_071882 C/T V632A plus 12674832 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 120 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 30313 rs6544718 ABCG8 64241 2 44016576 NM_022437 NP_071882 C/T V632A plus 12674832 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 120 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 30314 rs6544718 ABCG8 64241 2 44016576 NM_022437 NP_071882 C/T V632A plus 12674832 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 120 "by doubleHit,freq,cluster" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 30315 rs6546838 ALMS1 7840 2 73590935 NM_015120 NP_055935 A/G I1875V plus 16338488 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.38 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30316 rs6546838 ALMS1 7840 2 73590935 NM_015120 NP_055935 A/G I1875V plus 24642263 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30317 rs6546838 ALMS1 7840 2 73590935 NM_015120 NP_055935 A/G I1875V plus 24642263 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30318 rs6546838 ALMS1 7840 2 73590935 NM_015120 NP_055935 A/G I1875V plus 24642263 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30319 rs6546839 ALMS1 7840 2 73592163 NM_015120 NP_055935 C/G R2284P plus 9922540 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30320 rs6546839 ALMS1 7840 2 73592163 NM_015120 NP_055935 C/G R2284P plus 16338489 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 78 0.38 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30321 rs6546839 ALMS1 7840 2 73592163 NM_015120 NP_055935 C/G R2284P plus 24642271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30322 rs6546839 ALMS1 7840 2 73592163 NM_015120 NP_055935 C/G R2284P plus 24642271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30323 rs6546839 ALMS1 7840 2 73592163 NM_015120 NP_055935 C/G R2284P plus 24642271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 30324 rs6552804 MLF1IP 79682 4 186012848 NM_024629 NP_078905 A/G I157T plus 23733652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 30325 rs6552804 MLF1IP 79682 4 186012848 NM_024629 NP_078905 A/G I157T plus 23733652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 30326 rs6552804 MLF1IP 79682 4 186012848 NM_024629 NP_078905 A/G I157T plus 23733652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4q35.1 KSHV latent nuclear antigen interacting protein 1 30327 rs6557634 TNFRSF10A 8797 8 23116201 NM_003844 NP_003835 C/T H141R plus 10474821 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 116 "HapMap,doubleHit,freq,cluster" 8p21 "tumor necrosis factor receptor superfamily, member 10a" 30328 rs6558394 SCRIB 23513 8 144965072 NM_015356 NP_056171 A/G P422L plus 10466062 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 8q24.3 scribbled homolog (Drosophila) 30329 rs6558394 SCRIB 23513 8 144965072 NM_182706 NP_874365 A/G P422L plus 10466062 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 8q24.3 scribbled homolog (Drosophila) 30330 rs6560142 TRPM3 80036 9 70380538 NM_020952 NP_066003 C/T R1517Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30331 rs6560142 TRPM3 80036 9 70380538 NM_020952 NP_066003 C/T R1517Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30332 rs6560142 TRPM3 80036 9 70380538 NM_020952 NP_066003 C/T R1517Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30333 rs6560142 TRPM3 80036 9 70380538 NM_024971 NP_079247 C/T R1529Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30334 rs6560142 TRPM3 80036 9 70380538 NM_024971 NP_079247 C/T R1529Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30335 rs6560142 TRPM3 80036 9 70380538 NM_024971 NP_079247 C/T R1529Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30336 rs6560142 TRPM3 80036 9 70380538 NM_206944 NP_996827 C/T R1507Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30337 rs6560142 TRPM3 80036 9 70380538 NM_206944 NP_996827 C/T R1507Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30338 rs6560142 TRPM3 80036 9 70380538 NM_206944 NP_996827 C/T R1507Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30339 rs6560142 TRPM3 80036 9 70380538 NM_206945 NP_996828 C/T R1519Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30340 rs6560142 TRPM3 80036 9 70380538 NM_206945 NP_996828 C/T R1519Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30341 rs6560142 TRPM3 80036 9 70380538 NM_206945 NP_996828 C/T R1519Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30342 rs6560142 TRPM3 80036 9 70380538 NM_206946 NP_996829 C/T R1542Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30343 rs6560142 TRPM3 80036 9 70380538 NM_206946 NP_996829 C/T R1542Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30344 rs6560142 TRPM3 80036 9 70380538 NM_206946 NP_996829 C/T R1542Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30345 rs6560142 TRPM3 80036 9 70380538 NM_206947 NP_996830 C/T R1532Q plus 24556812 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30346 rs6560142 TRPM3 80036 9 70380538 NM_206947 NP_996830 C/T R1532Q plus 24556812 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30347 rs6560142 TRPM3 80036 9 70380538 NM_206947 NP_996830 C/T R1532Q plus 24556812 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 30348 rs6564838 PKD1L2 114780 16 79799695 NM_182740 NP_877417 C/T E221G plus 23462878 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30349 rs6564838 PKD1L2 114780 16 79799695 NM_182740 NP_877417 C/T E221G plus 23462878 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30350 rs6564838 PKD1L2 114780 16 79799695 NM_182740 NP_877417 C/T E221G plus 23462878 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 30351 rs6564956 HSPC105 93517 16 80591936 NM_145168 NP_660151 C/G S10T plus 10804259 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 16q23.2 NAD(P) dependent steroid dehydrogenase-like 30352 rs6564956 HSPC105 93517 16 80591936 NM_145168 NP_660151 C/G S10T plus 23523419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 16q23.2 NAD(P) dependent steroid dehydrogenase-like 30353 rs6564956 HSPC105 93517 16 80591936 NM_145168 NP_660151 C/G S10T plus 23523419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 16q23.2 NAD(P) dependent steroid dehydrogenase-like 30354 rs6564956 HSPC105 93517 16 80591936 NM_145168 NP_660151 C/G S10T plus 23523419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 16q23.2 NAD(P) dependent steroid dehydrogenase-like 30355 rs6569605 LAMA2 3908 6 129849322 NM_000426 NP_000417 C/T A2587V plus 23966188 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 30356 rs6569605 LAMA2 3908 6 129849322 NM_000426 NP_000417 C/T A2587V plus 23966188 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 30357 rs6569605 LAMA2 3908 6 129849322 NM_000426 NP_000417 C/T A2587V plus 23966188 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 6q22-q23 "laminin, alpha 2 (merosin, congenital muscular dystrophy)" 30358 rs6571751 RPGRIP1 57096 14 20840570 NM_020366 NP_065099 A/G K192E plus 10754036 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 30359 rs6571751 RPGRIP1 57096 14 20840570 NM_020366 NP_065099 A/G K192E plus 23798164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 30360 rs6571751 RPGRIP1 57096 14 20840570 NM_020366 NP_065099 A/G K192E plus 23798164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 30361 rs6571751 RPGRIP1 57096 14 20840570 NM_020366 NP_065099 A/G K192E plus 23798164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 30362 rs6578533 OR52R1 119695 11 4781586 XM_061627 XP_061627 A/T N201Y plus 23548391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 30363 rs6578533 OR52R1 119695 11 4781586 XM_061627 XP_061627 A/T N201Y plus 23548391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 30364 rs6578533 OR52R1 119695 11 4781586 XM_061627 XP_061627 A/T N201Y plus 23548391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 30365 rs6579255 CPNE1 8904 20 33682910 NM_003915 NP_003906 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30366 rs6579255 CPNE1 8904 20 33682910 NM_003915 NP_003906 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30367 rs6579255 CPNE1 8904 20 33682910 NM_003915 NP_003906 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30368 rs6579255 CPNE1 8904 20 33682910 NM_152925 NP_690902 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30369 rs6579255 CPNE1 8904 20 33682910 NM_152925 NP_690902 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30370 rs6579255 CPNE1 8904 20 33682910 NM_152925 NP_690902 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30371 rs6579255 CPNE1 8904 20 33682910 NM_152926 NP_690903 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30372 rs6579255 CPNE1 8904 20 33682910 NM_152926 NP_690903 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30373 rs6579255 CPNE1 8904 20 33682910 NM_152926 NP_690903 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30374 rs6579255 CPNE1 8904 20 33682910 NM_152927 NP_690904 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30375 rs6579255 CPNE1 8904 20 33682910 NM_152927 NP_690904 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30376 rs6579255 CPNE1 8904 20 33682910 NM_152927 NP_690904 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30377 rs6579255 CPNE1 8904 20 33682910 NM_152928 NP_690905 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30378 rs6579255 CPNE1 8904 20 33682910 NM_152928 NP_690905 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30379 rs6579255 CPNE1 8904 20 33682910 NM_152928 NP_690905 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30380 rs6579255 CPNE1 8904 20 33682910 NM_152929 NP_690906 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30381 rs6579255 CPNE1 8904 20 33682910 NM_152929 NP_690906 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30382 rs6579255 CPNE1 8904 20 33682910 NM_152929 NP_690906 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30383 rs6579255 CPNE1 8904 20 33682910 NM_152930 NP_690907 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30384 rs6579255 CPNE1 8904 20 33682910 NM_152930 NP_690907 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30385 rs6579255 CPNE1 8904 20 33682910 NM_152930 NP_690907 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30386 rs6579255 CPNE1 8904 20 33682910 NM_152931 NP_690908 C/T Q211R plus 23567693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30387 rs6579255 CPNE1 8904 20 33682910 NM_152931 NP_690908 C/T Q211R plus 23567693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30388 rs6579255 CPNE1 8904 20 33682910 NM_152931 NP_690908 C/T Q211R plus 23567693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 20q11.23 copine I 30389 rs6580873 KRTHB1 3887 12 50968192 NM_002281 NP_002272 A/C L248R plus 24342242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 12q13 "keratin, hair, basic, 1" 30390 rs6580873 KRTHB1 3887 12 50968192 NM_002281 NP_002272 A/C L248R plus 24342242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 12q13 "keratin, hair, basic, 1" 30391 rs6580873 KRTHB1 3887 12 50968192 NM_002281 NP_002272 A/C L248R plus 24342242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 12q13 "keratin, hair, basic, 1" 30392 rs6580904 HUMCYT2A 51350 12 51452207 NM_015848 NP_056932 C/T A359T plus 23921753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 12q13.13 cytokeratin 2 30393 rs6580904 HUMCYT2A 51350 12 51452207 NM_015848 NP_056932 C/T A359T plus 23921753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 12q13.13 cytokeratin 2 30394 rs6580904 HUMCYT2A 51350 12 51452207 NM_015848 NP_056932 C/T A359T plus 23921753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 12q13.13 cytokeratin 2 30395 rs6580942 ESPL1 9700 12 51948891 NM_012291 NP_036423 A/C A25D plus 24392178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 30396 rs6580942 ESPL1 9700 12 51948891 NM_012291 NP_036423 A/C A25D plus 24392178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 30397 rs6580942 ESPL1 9700 12 51948891 NM_012291 NP_036423 A/C A25D plus 24392178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8 extra spindle poles like 1 (S. cerevisiae) 30398 rs6584356 PKD2L1 9033 10 102040232 NM_016112 NP_057196 A/C R681L plus 24487746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24 polycystic kidney disease 2-like 1 30399 rs6584356 PKD2L1 9033 10 102040232 NM_016112 NP_057196 A/C R681L plus 24487746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 10q24 polycystic kidney disease 2-like 1 30400 rs6584356 PKD2L1 9033 10 102040232 NM_016112 NP_057196 A/C R681L plus 24487746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 10q24 polycystic kidney disease 2-like 1 30401 rs6586145 LIPF 8513 10 90423325 NM_004190 NP_004181 A/T F224I plus 23569735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 10q23.31 "lipase, gastric" 30402 rs6586145 LIPF 8513 10 90423325 NM_004190 NP_004181 A/T F224I plus 23569735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 10q23.31 "lipase, gastric" 30403 rs6586145 LIPF 8513 10 90423325 NM_004190 NP_004181 A/T F224I plus 23569735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q23.31 "lipase, gastric" 30404 rs6586179 LIPA 3988 10 90997319 NM_000235 NP_000226 C/T G23R plus 10604742 1303 SEQUENOM CEPH CEPH (92) 92 0.15 123 "by doubleHit,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 30405 rs6586179 LIPA 3988 10 90997319 NM_000235 NP_000226 C/T G23R plus 24546497 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "by doubleHit,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 30406 rs6586179 LIPA 3988 10 90997319 NM_000235 NP_000226 C/T G23R plus 24546497 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 30407 rs6586179 LIPA 3988 10 90997319 NM_000235 NP_000226 C/T G23R plus 24546497 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by doubleHit,freq,cluster" 10q23.2-q23.3 "lipase A, lysosomal acid, cholesterol esterase (Wolman disease)" 30408 rs6586239 RIPK4 54101 21 42060236 NM_020639 NP_065690 C/G A12G plus 23652015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by doubleHit,freq,cluster" 21q22.3 ankyrin repeat domain 3 30409 rs6586239 RIPK4 54101 21 42060236 NM_020639 NP_065690 C/G A12G plus 23652015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 21q22.3 ankyrin repeat domain 3 30410 rs6586239 RIPK4 54101 21 42060236 NM_020639 NP_065690 C/G A12G plus 23652015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 21q22.3 ankyrin repeat domain 3 30411 rs6587220 EPN2 22905 17 19172671 NM_014964 NP_055779 C/T V401A plus 24120299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p11.2 epsin 2 30412 rs6587220 EPN2 22905 17 19172671 NM_014964 NP_055779 C/T V401A plus 24120299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 17p11.2 epsin 2 30413 rs6587220 EPN2 22905 17 19172671 NM_014964 NP_055779 C/T V401A plus 24120299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 17p11.2 epsin 2 30414 rs6587220 EPN2 22905 17 19172671 NM_148921 NP_683723 C/T V344A plus 24120299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p11.2 epsin 2 30415 rs6587220 EPN2 22905 17 19172671 NM_148921 NP_683723 C/T V344A plus 24120299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 17p11.2 epsin 2 30416 rs6587220 EPN2 22905 17 19172671 NM_148921 NP_683723 C/T V344A plus 24120299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 17p11.2 epsin 2 30417 rs6591324 OR5R1 219479 11 55941921 XM_166831 XP_166831 A/G C122R plus 24569008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30418 rs6591324 OR5R1 219479 11 55941921 XM_166831 XP_166831 A/G C122R plus 24569008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30419 rs6591324 OR5R1 219479 11 55941921 XM_166831 XP_166831 A/G C122R plus 24569008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30420 rs6591536 OR5A1 219982 11 58967764 XM_166899 XP_166899 A/G D183N plus 11123733 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 30421 rs6591536 OR5A1 219982 11 58967764 XM_166899 XP_166899 A/G D183N plus 23599055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 30422 rs6591536 OR5A1 219982 11 58967764 XM_166899 XP_166899 A/G D183N plus 23599055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 30423 rs6591536 OR5A1 219982 11 58967764 XM_166899 XP_166899 A/G D183N plus 23599055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 30424 rs6591561 MS4A4A 51338 11 59826752 NM_024021 NP_076926 A/G M159V plus 10703067 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 120 "HapMap,doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 4" 30425 rs6591561 MS4A4A 51338 11 59826752 NM_148975 NP_683876 A/G M178V plus 10703067 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 120 "HapMap,doubleHit,freq,cluster" 11q12 "membrane-spanning 4-domains, subfamily A, member 4" 30426 rs6595908 ADAMTS19 171019 5 128891370 NM_133638 NP_598377 A/G S367G plus 10202455 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,freq,cluster" 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 30427 rs6595908 ADAMTS19 171019 5 128891370 NM_133638 NP_598377 A/G S367G plus 23758401 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,freq,cluster" 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 30428 rs6595908 ADAMTS19 171019 5 128891370 NM_133638 NP_598377 A/G S367G plus 23758401 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,freq,cluster" 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 30429 rs6595908 ADAMTS19 171019 5 128891370 NM_133638 NP_598377 A/G S367G plus 23758401 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 30430 rs6597801 LHPP 64077 10 126162853 NM_022126 NP_071409 A/G Q94R plus 24580172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 10q26.2 phospholysine phosphohistidine inorganic pyrophosphate phosphatase 30431 rs6597801 LHPP 64077 10 126162853 NM_022126 NP_071409 A/G Q94R plus 24580172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10q26.2 phospholysine phosphohistidine inorganic pyrophosphate phosphatase 30432 rs6597801 LHPP 64077 10 126162853 NM_022126 NP_071409 A/G Q94R plus 24580172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 10q26.2 phospholysine phosphohistidine inorganic pyrophosphate phosphatase 30433 rs6598679 SHCBP1 79801 16 45212711 NM_024745 NP_079021 A/G M21T plus 10828090 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 "HapMap,cluster" 16q11.2 likely ortholog of mouse Shc SH2-domain binding protein 1 30434 rs6599079 OSR1 9943 3 38246885 NM_005109 NP_005100 C/T T304I plus 10073551 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 116 "HapMap,doubleHit,freq,cluster" 3p22-p21.3 oxidative-stress responsive 1 30435 rs6650971 FAT2 2196 5 150881454 NM_001447 NP_001438 C/T M3631I plus 23767398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 30436 rs6650971 FAT2 2196 5 150881454 NM_001447 NP_001438 C/T M3631I plus 23767398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 30437 rs6650971 FAT2 2196 5 150881454 NM_001447 NP_001438 C/T M3631I plus 23767398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 30438 rs6657250 USH2A 7399 1 212608176 NM_206933 NP_996816 A/G I2106T plus 23866831 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 30439 rs6657250 USH2A 7399 1 212608176 NM_206933 NP_996816 A/G I2106T plus 23866831 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 30440 rs6657250 USH2A 7399 1 212608176 NM_206933 NP_996816 A/G I2106T plus 23866831 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 30441 rs6657616 CATSPER4 378807 1 26212093 XM_371237 XP_371237 A/G D436N plus 23668199 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 1p35.3 "cation channel, sperm associated 4" 30442 rs6657616 CATSPER4 378807 1 26212093 XM_371237 XP_371237 A/G D436N plus 23668199 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 1p35.3 "cation channel, sperm associated 4" 30443 rs6657616 CATSPER4 378807 1 26212093 XM_371237 XP_371237 A/G D436N plus 23668199 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p35.3 "cation channel, sperm associated 4" 30444 rs6658256 OR2L3 391192 1 244550335 XM_372824 XP_372824 C/T S104L plus 9811999 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq" 1q44 "olfactory receptor, family 2, subfamily L, member 3" 30445 rs6661174 FMO2 2327 1 167909748 NM_001460 NP_001451 C/T *472Q plus 23198820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 30446 rs6661174 FMO2 2327 1 167909748 NM_001460 NP_001451 C/T *472Q plus 23198820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 30447 rs6661174 FMO2 2327 1 167909748 NM_001460 NP_001451 C/T *472Q plus 23198820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q23-q25 flavin containing monooxygenase 2 30448 rs6662382 OR10T2 128360 1 155181919 XM_060945 XP_060945 C/T I417M plus 9820365 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.25 116 "HapMap,doubleHit,freq" 1q23.1 "olfactory receptor, family 10, subfamily T, member 2" 30449 rs6664332 OR2AK2 391191 1 244454970 XM_372822 XP_372822 A/G S407N plus 23909024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily AK, member 2" 30450 rs6664332 OR2AK2 391191 1 244454970 XM_372822 XP_372822 A/G S407N plus 23909024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily AK, member 2" 30451 rs6664332 OR2AK2 391191 1 244454970 XM_372822 XP_372822 A/G S407N plus 23909024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q44 "olfactory receptor, family 2, subfamily AK, member 2" 30452 rs6667260 ITPKB 3707 1 223230673 NM_002221 NP_002212 A/C S408A plus 28460842 549 KYUGEN CP CEPH (78) 156 0.46 123 "by doubleHit,freq,cluster" 1q42.13 "inositol 1,4,5-trisphosphate 3-kinase B" 30453 rs6667260 ITPKB 3707 1 223230673 NM_002221 NP_002212 A/C S408A plus 28460842 1336 KYUGEN JPK3 Japanese (100) 200 0.33 123 "by doubleHit,freq,cluster" 1q42.13 "inositol 1,4,5-trisphosphate 3-kinase B" 30454 rs6667718 LBR 3930 1 221913879 NM_002296 NP_002287 C/T S154N plus 23181145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30455 rs6667718 LBR 3930 1 221913879 NM_002296 NP_002287 C/T S154N plus 23181145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30456 rs6667718 LBR 3930 1 221913879 NM_002296 NP_002287 C/T S154N plus 23181145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30457 rs6667718 LBR 3930 1 221913879 NM_194442 NP_919424 C/T S154N plus 23181145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30458 rs6667718 LBR 3930 1 221913879 NM_194442 NP_919424 C/T S154N plus 23181145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30459 rs6667718 LBR 3930 1 221913879 NM_194442 NP_919424 C/T S154N plus 23181145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 1q42.1 lamin B receptor 30460 rs6668765 LGR6 59352 1 199011121 NM_021636 NP_067649 G/T A464S plus 23169031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q32.1 leucine-rich repeat-containing G protein-coupled receptor 6 30461 rs6668765 LGR6 59352 1 199011121 NM_021636 NP_067649 G/T A464S plus 23169031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 1q32.1 leucine-rich repeat-containing G protein-coupled receptor 6 30462 rs6668765 LGR6 59352 1 199011121 NM_021636 NP_067649 G/T A464S plus 23169031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q32.1 leucine-rich repeat-containing G protein-coupled receptor 6 30463 rs6669481 SLC26A9 115019 1 202615931 NM_134325 NP_599152 C/T R804G plus 23702697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 1q31-q32 "solute carrier family 26, member 9" 30464 rs6669481 SLC26A9 115019 1 202615931 NM_134325 NP_599152 C/T R804G plus 23702697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 1q31-q32 "solute carrier family 26, member 9" 30465 rs6669481 SLC26A9 115019 1 202615931 NM_134325 NP_599152 C/T R804G plus 23702697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q31-q32 "solute carrier family 26, member 9" 30466 rs6671421 EVI5 7813 1 92881430 XM_496372 XP_496372 A/G S137P plus 9839005 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,freq,cluster" 1p22 ecotropic viral integration site 5 30467 rs6671527 MOBKL2C 148932 1 46792699 NM_145279 NP_660322 A/G R24X plus 9839228 885 TSC-CSHL HapMap-CEPH-30-trios 59 0.5 121 "HapMap,freq,cluster" 1p34.1 "MOB1, Mps One Binder kinase activator-like 2C (yeast)" 30468 rs6674775 HBXIP 10542 1 110662481 NM_006402 NP_006393 C/T S17N plus 9845789 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 123 "HapMap,doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30469 rs6674775 HBXIP 10542 1 110662481 NM_006402 NP_006393 C/T S17N plus 24279415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30470 rs6674775 HBXIP 10542 1 110662481 NM_006402 NP_006393 C/T S17N plus 24279415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30471 rs6674775 HBXIP 10542 1 110662481 NM_006402 NP_006393 C/T S17N plus 24279415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30472 rs6675281 DISC1 27185 1 228260836 NM_018662 NP_061132 C/T L607F plus 23242518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 30473 rs6675281 DISC1 27185 1 228260836 NM_018662 NP_061132 C/T L607F plus 23242518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 30474 rs6675281 DISC1 27185 1 228260836 NM_018662 NP_061132 C/T L607F plus 23242518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q42.1 disrupted in schizophrenia 1 30475 rs6676290 PGM1 5236 1 63832060 NM_002633 NP_002624 A/G V501I plus 23688977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1p31 phosphoglucomutase 1 30476 rs6676290 PGM1 5236 1 63832060 NM_002633 NP_002624 A/G V501I plus 23688977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 1p31 phosphoglucomutase 1 30477 rs6676290 PGM1 5236 1 63832060 NM_002633 NP_002624 A/G V501I plus 23688977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p31 phosphoglucomutase 1 30478 rs6679056 OR10R2 343406 1 155263387 XM_291548 XP_291548 A/G E443G plus 24280190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 30479 rs6679056 OR10R2 343406 1 155263387 XM_291548 XP_291548 A/G E443G plus 24280190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 30480 rs6679056 OR10R2 343406 1 155263387 XM_291548 XP_291548 A/G E443G plus 24280190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq" 1q23.1 "olfactory receptor, family 10, subfamily R, member 2" 30481 rs6679793 IRTA2 83416 1 154327170 NM_031281 NP_112571 A/G Y267H plus 23160843 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30482 rs6679793 IRTA2 83416 1 154327170 NM_031281 NP_112571 A/G Y267H plus 23160843 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30483 rs6679793 IRTA2 83416 1 154327170 NM_031281 NP_112571 A/G Y267H plus 23160843 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 1q21 immunoglobulin superfamily receptor translocation associated 2 30484 rs6681346 COG2 22796 1 227117491 NM_007357 NP_031383 A/T N304K plus 23234007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q42.2 component of oligomeric golgi complex 2 30485 rs6681346 COG2 22796 1 227117491 NM_007357 NP_031383 A/T N304K plus 23234007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 1q42.2 component of oligomeric golgi complex 2 30486 rs6681346 COG2 22796 1 227117491 NM_007357 NP_031383 A/T N304K plus 23234007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 1q42.2 component of oligomeric golgi complex 2 30487 rs6688832 H6PD 9563 1 9258176 NM_004285 NP_004276 A/G R453Q plus 24220458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq" 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 30488 rs6688832 H6PD 9563 1 9258176 NM_004285 NP_004276 A/G R453Q plus 24220458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq" 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 30489 rs6688832 H6PD 9563 1 9258176 NM_004285 NP_004276 A/G R453Q plus 24220458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq" 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 30490 rs6691117 CR1 1378 1 204171326 NM_000573 NP_000564 A/G I1615V plus 23669151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30491 rs6691117 CR1 1378 1 204171326 NM_000573 NP_000564 A/G I1615V plus 23669151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30492 rs6691117 CR1 1378 1 204171326 NM_000573 NP_000564 A/G I1615V plus 23669151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30493 rs6691117 CR1 1378 1 204171326 NM_000651 NP_000642 A/G I2065V plus 23669151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30494 rs6691117 CR1 1378 1 204171326 NM_000651 NP_000642 A/G I2065V plus 23669151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30495 rs6691117 CR1 1378 1 204171326 NM_000651 NP_000642 A/G I2065V plus 23669151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 30496 rs6692219 CAP350 9857 1 176721241 NM_014810 NP_055625 C/G R892T plus 9881413 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 116 "HapMap,freq" 1p36.13-q41 centrosome-associated protein 350 30497 rs6693815 EPS8L3 79574 1 110013302 NM_024526 NP_078802 C/T G163S plus 23203577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30498 rs6693815 EPS8L3 79574 1 110013302 NM_024526 NP_078802 C/T G163S plus 23203577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30499 rs6693815 EPS8L3 79574 1 110013302 NM_024526 NP_078802 C/T G163S plus 23203577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30500 rs6693815 EPS8L3 79574 1 110013302 NM_133181 NP_573444 C/T G163S plus 23203577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30501 rs6693815 EPS8L3 79574 1 110013302 NM_133181 NP_573444 C/T G163S plus 23203577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30502 rs6693815 EPS8L3 79574 1 110013302 NM_133181 NP_573444 C/T G163S plus 23203577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30503 rs6693815 EPS8L3 79574 1 110013302 NM_139053 NP_620641 C/T G164S plus 23203577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30504 rs6693815 EPS8L3 79574 1 110013302 NM_139053 NP_620641 C/T G164S plus 23203577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30505 rs6693815 EPS8L3 79574 1 110013302 NM_139053 NP_620641 C/T G164S plus 23203577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 30506 rs6695966 SOC 91544 1 26304903 NM_145345 NP_663320 C/T E132G plus 23668243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p35.3 socius 30507 rs6695966 SOC 91544 1 26304903 NM_145345 NP_663320 C/T E132G plus 23668243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 1p35.3 socius 30508 rs6695966 SOC 91544 1 26304903 NM_145345 NP_663320 C/T E132G plus 23668243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 1p35.3 socius 30509 rs6698159 HBXIP 10542 1 110662319 NM_006402 NP_006393 A/G P71L plus 23208636 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30510 rs6698159 HBXIP 10542 1 110662319 NM_006402 NP_006393 A/G P71L plus 23208636 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30511 rs6698159 HBXIP 10542 1 110662319 NM_006402 NP_006393 A/G P71L plus 23208636 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 1p13.2 hepatitis B virus x interacting protein 30512 rs6704505 TDRD5 163589 1 176331658 NM_173533 NP_775804 A/G K358E plus 24631065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq" 1q24.3-q25.1 tudor domain containing 5 30513 rs6704505 TDRD5 163589 1 176331658 NM_173533 NP_775804 A/G K358E plus 24631065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 1q24.3-q25.1 tudor domain containing 5 30514 rs6704505 TDRD5 163589 1 176331658 NM_173533 NP_775804 A/G K358E plus 24631065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 1q24.3-q25.1 tudor domain containing 5 30515 rs6707930 IL1F9 56300 2 113453861 NM_019618 NP_062564 A/C Q69K plus 23204994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 2q12-q21 "interleukin 1 family, member 9" 30516 rs6707930 IL1F9 56300 2 113453861 NM_019618 NP_062564 A/C Q69K plus 23204994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 2q12-q21 "interleukin 1 family, member 9" 30517 rs6707930 IL1F9 56300 2 113453861 NM_019618 NP_062564 A/C Q69K plus 23204994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q12-q21 "interleukin 1 family, member 9" 30518 rs6708527 DNAH7 56171 2 196496989 NM_018897 NP_061720 C/T R3386H plus 9913999 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 2q33.1 "dynein, axonemal, heavy polypeptide 7" 30519 rs6710480 UPP2 151531 2 158784113 NM_173355 NP_775491 G/T R10S plus 23714369 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by doubleHit,freq,cluster" 2q24.2 uridine phosphorylase 2 30520 rs6710480 UPP2 151531 2 158784113 NM_173355 NP_775491 G/T R10S plus 23714369 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2q24.2 uridine phosphorylase 2 30521 rs6710480 UPP2 151531 2 158784113 NM_173355 NP_775491 G/T R10S plus 23714369 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 2q24.2 uridine phosphorylase 2 30522 rs6710817 NAG 51594 2 15323160 NM_015909 NP_056993 C/T A2074T plus 9918074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 116 "HapMap,doubleHit,freq" 2p24 neuroblastoma-amplified protein 30523 rs6710817 NAG 51594 2 15323160 NM_015909 NP_056993 C/T A2074T plus 9918074 1303 SEQUENOM CEPH CEPH (92) 92 0.11 116 "HapMap,doubleHit,freq" 2p24 neuroblastoma-amplified protein 30524 rs6711382 NEB 4703 2 152356585 NM_004543 NP_004534 A/G Y1301H plus 9919103 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 2q22 nebulin 30525 rs6711382 NEB 4703 2 152356585 NM_004543 NP_004534 A/G Y1301H plus 23230889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 2q22 nebulin 30526 rs6711382 NEB 4703 2 152356585 NM_004543 NP_004534 A/G Y1301H plus 23230889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 2q22 nebulin 30527 rs6711382 NEB 4703 2 152356585 NM_004543 NP_004534 A/G Y1301H plus 23230889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 2q22 nebulin 30528 rs6719500 DNAH7 56171 2 196650908 NM_018897 NP_061720 C/T K825E plus 9933808 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 116 "HapMap,doubleHit,freq" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 30529 rs6720173 ABCG5 64240 2 43952052 NM_022436 NP_071881 C/G Q604E plus 24650850 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1)" 30530 rs6720173 ABCG5 64240 2 43952052 NM_022436 NP_071881 C/G Q604E plus 24650850 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1)" 30531 rs6720173 ABCG5 64240 2 43952052 NM_022436 NP_071881 C/G Q604E plus 24650850 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 2p21 "ATP-binding cassette, sub-family G (WHITE), member 5 (sterolin 1)" 30532 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 14886330 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30533 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 14886330 902 AFFY Caucasian 22 0.23 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30534 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 14886330 903 AFFY Asian 10 1 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30535 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 14886330 904 AFFY CEPH 3 0.5 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30536 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 14886330 905 AFFY PDpanel 48 0.27 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30537 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 16338448 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 16 0.25 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30538 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 24642268 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30539 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 24642268 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30540 rs6724782 ALMS1 7840 2 73591645 NM_015120 NP_055935 A/T S2111R plus 24642268 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p13 Alstrom syndrome 1 30541 rs6725443 MPP4 58538 2 202383208 NM_033066 NP_149055 C/T G44S plus 23710047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q33.2 "membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)" 30542 rs6725443 MPP4 58538 2 202383208 NM_033066 NP_149055 C/T G44S plus 23710047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 2q33.2 "membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)" 30543 rs6725443 MPP4 58538 2 202383208 NM_033066 NP_149055 C/T G44S plus 23710047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q33.2 "membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)" 30544 rs6727226 PASK 23178 2 241786240 NM_015148 NP_055963 C/T V694M plus 23304380 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q37.3 PAS domain containing serine/threonine kinase 30545 rs6727226 PASK 23178 2 241786240 NM_015148 NP_055963 C/T V694M plus 23304380 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 2q37.3 PAS domain containing serine/threonine kinase 30546 rs6727226 PASK 23178 2 241786240 NM_015148 NP_055963 C/T V694M plus 23304380 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q37.3 PAS domain containing serine/threonine kinase 30547 rs6729801 DNAJC10 54431 2 183410261 NM_018981 NP_061854 A/G D76N plus 24151107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by cluster,freq" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 30548 rs6729801 DNAJC10 54431 2 183410261 NM_018981 NP_061854 A/G D76N plus 24151107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 30549 rs6729801 DNAJC10 54431 2 183410261 NM_018981 NP_061854 A/G D76N plus 24151107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 2q32.1 "DnaJ (Hsp40) homolog, subfamily C, member 10" 30550 rs6733871 LRRTM1 347730 2 80441614 NM_178839 NP_849161 C/T N330S plus 9960186 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,doubleHit,freq,cluster" 2p12 leucine-rich repeat transmembrane neuronal 1 protein 30551 rs6733871 LRRTM1 347730 2 80441614 NM_178839 NP_849161 C/T N330S plus 24150217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "HapMap,doubleHit,freq,cluster" 2p12 leucine-rich repeat transmembrane neuronal 1 protein 30552 rs6733871 LRRTM1 347730 2 80441614 NM_178839 NP_849161 C/T N330S plus 24150217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,freq,cluster" 2p12 leucine-rich repeat transmembrane neuronal 1 protein 30553 rs6733871 LRRTM1 347730 2 80441614 NM_178839 NP_849161 C/T N330S plus 24150217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 2p12 leucine-rich repeat transmembrane neuronal 1 protein 30554 rs6736017 HTR2B 3357 2 231798921 NM_000867 NP_000858 C/T M421V plus 9964162 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,freq,cluster" 2q36.3-q37.1 5-hydroxytryptamine (serotonin) receptor 2B 30555 rs6736017 HTR2B 3357 2 231798921 NM_000867 NP_000858 C/T M421V plus 23719968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 2q36.3-q37.1 5-hydroxytryptamine (serotonin) receptor 2B 30556 rs6736017 HTR2B 3357 2 231798921 NM_000867 NP_000858 C/T M421V plus 23719968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq,cluster" 2q36.3-q37.1 5-hydroxytryptamine (serotonin) receptor 2B 30557 rs6736017 HTR2B 3357 2 231798921 NM_000867 NP_000858 C/T M421V plus 23719968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 2q36.3-q37.1 5-hydroxytryptamine (serotonin) receptor 2B 30558 rs6736609 MYO3B 140469 2 171086294 NM_138995 NP_620482 A/G V770I plus 9965215 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 30559 rs6736609 MYO3B 140469 2 171086294 NM_138995 NP_620482 A/G V770I plus 23716659 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 30560 rs6736609 MYO3B 140469 2 171086294 NM_138995 NP_620482 A/G V770I plus 23716659 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 30561 rs6736609 MYO3B 140469 2 171086294 NM_138995 NP_620482 A/G V770I plus 23716659 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 30562 rs6736913 EML4 27436 2 42421669 NM_019063 NP_061936 A/G K283E plus 24634884 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2p22-p21 echinoderm microtubule associated protein like 4 30563 rs6736913 EML4 27436 2 42421669 NM_019063 NP_061936 A/G K283E plus 24634884 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 2p22-p21 echinoderm microtubule associated protein like 4 30564 rs6736913 EML4 27436 2 42421669 NM_019063 NP_061936 A/G K283E plus 24634884 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p22-p21 echinoderm microtubule associated protein like 4 30565 rs6737156 DGUOK 1716 2 74071389 NM_080915 NP_550437 C/T L51P plus 23221307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 2p13 deoxyguanosine kinase 30566 rs6737156 DGUOK 1716 2 74071389 NM_080915 NP_550437 C/T L51P plus 23221307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 2p13 deoxyguanosine kinase 30567 rs6737156 DGUOK 1716 2 74071389 NM_080915 NP_550437 C/T L51P plus 23221307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2p13 deoxyguanosine kinase 30568 rs6741892 GALM 130589 2 38828621 NM_138801 NP_620156 A/T N190Y plus 9974980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,doubleHit,freq,cluster" 2p22.3 galactose mutarotase (aldose 1-epimerase) 30569 rs6743376 IL1F10 84639 2 113548564 NM_032556 NP_115945 A/C A51D plus 24277918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30570 rs6743376 IL1F10 84639 2 113548564 NM_032556 NP_115945 A/C A51D plus 24277918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30571 rs6743376 IL1F10 84639 2 113548564 NM_032556 NP_115945 A/C A51D plus 24277918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30572 rs6743376 IL1F10 84639 2 113548564 NM_173161 NP_775184 A/C A51D plus 24277918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30573 rs6743376 IL1F10 84639 2 113548564 NM_173161 NP_775184 A/C A51D plus 24277918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30574 rs6743376 IL1F10 84639 2 113548564 NM_173161 NP_775184 A/C A51D plus 24277918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30575 rs6746030 SCN9A 6335 2 166924665 NM_002977 NP_002968 A/G W1150R plus 24301615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 30576 rs6746030 SCN9A 6335 2 166924665 NM_002977 NP_002968 A/G W1150R plus 24301615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 30577 rs6746030 SCN9A 6335 2 166924665 NM_002977 NP_002968 A/G W1150R plus 24301615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 2q24 "sodium channel, voltage-gated, type IX, alpha" 30578 rs6749066 MAP2 4133 2 210382936 NM_002374 NP_002365 A/G E179G plus 23240298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30579 rs6749066 MAP2 4133 2 210382936 NM_002374 NP_002365 A/G E179G plus 23240298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30580 rs6749066 MAP2 4133 2 210382936 NM_002374 NP_002365 A/G E179G plus 23240298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30581 rs6749066 MAP2 4133 2 210382936 NM_031846 NP_114034 A/G E179G plus 23240298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30582 rs6749066 MAP2 4133 2 210382936 NM_031846 NP_114034 A/G E179G plus 23240298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30583 rs6749066 MAP2 4133 2 210382936 NM_031846 NP_114034 A/G E179G plus 23240298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q34-q35 microtubule-associated protein 2 30584 rs6750289 IMMT 10989 2 86312482 NM_006839 NP_006830 A/G P124S plus 23887064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 2p11.2 "inner membrane protein, mitochondrial (mitofilin)" 30585 rs6750289 IMMT 10989 2 86312482 NM_006839 NP_006830 A/G P124S plus 23887064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 2p11.2 "inner membrane protein, mitochondrial (mitofilin)" 30586 rs6750289 IMMT 10989 2 86312482 NM_006839 NP_006830 A/G P124S plus 23887064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 2p11.2 "inner membrane protein, mitochondrial (mitofilin)" 30587 rs6752026 APOB 338 2 21172586 NM_000384 NP_000375 A/G P145S plus 20418989 889 PHARMGKB_PARC PA128275074 94 0.09 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 30588 rs6755571 UGT1A4 54657 2 234409536 NM_007120 NP_009051 A/C P24T plus 9999931 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 116 "HapMap,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A4" 30589 rs6756280 KBTBD9 114818 2 23832707 XM_496546 XP_496546 A/G S5710G plus 24254753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 30590 rs6756280 KBTBD9 114818 2 23832707 XM_496546 XP_496546 A/G S5710G plus 24254753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 30591 rs6756280 KBTBD9 114818 2 23832707 XM_496546 XP_496546 A/G S5710G plus 24254753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 30592 rs6758492 MTHFD2 10797 2 74344569 NM_006636 NP_006627 A/G A56T plus 10005246 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 2p13.1 "methylene tetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase" 30593 rs6759356 GALNT5 11227 2 157966314 NM_014568 NP_055383 C/G Q489H plus 23268342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 2q24.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 30594 rs6759356 GALNT5 11227 2 157966314 NM_014568 NP_055383 C/G Q489H plus 23268342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 2q24.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 30595 rs6759356 GALNT5 11227 2 157966314 NM_014568 NP_055383 C/G Q489H plus 23268342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2q24.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) 30596 rs6759892 UGT1A6 54578 2 234383669 NM_001072 NP_001063 G/T S7A plus 10007811 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 30597 rs6759892 UGT1A6 54578 2 234383669 NM_001072 NP_001063 G/T S7A plus 24278533 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 30598 rs6759892 UGT1A6 54578 2 234383669 NM_001072 NP_001063 G/T S7A plus 24278533 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 30599 rs6759892 UGT1A6 54578 2 234383669 NM_001072 NP_001063 G/T S7A plus 24278533 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 2q37 "UDP glycosyltransferase 1 family, polypeptide A6" 30600 rs6760593 SCN7A 6332 2 167091726 NM_002976 NP_002967 A/G A1313V plus 23889475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,cluster" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 30601 rs6760593 SCN7A 6332 2 167091726 NM_002976 NP_002967 A/G A1313V plus 23889475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,cluster" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 30602 rs6760593 SCN7A 6332 2 167091726 NM_002976 NP_002967 A/G A1313V plus 23889475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,cluster" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 30603 rs6761276 IL1F10 84639 2 113548543 NM_032556 NP_115945 C/T I44T plus 24277910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30604 rs6761276 IL1F10 84639 2 113548543 NM_032556 NP_115945 C/T I44T plus 24277910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30605 rs6761276 IL1F10 84639 2 113548543 NM_032556 NP_115945 C/T I44T plus 24277910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30606 rs6761276 IL1F10 84639 2 113548543 NM_173161 NP_775184 C/T I44T plus 24277910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30607 rs6761276 IL1F10 84639 2 113548543 NM_173161 NP_775184 C/T I44T plus 24277910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30608 rs6761276 IL1F10 84639 2 113548543 NM_173161 NP_775184 C/T I44T plus 24277910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2q14.1 "interleukin 1 family, member 10 (theta)" 30609 rs6761637 MARCO 8685 2 119455293 NM_006770 NP_006761 C/T F282S plus 23251087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2q12-q13 macrophage receptor with collagenous structure 30610 rs6761637 MARCO 8685 2 119455293 NM_006770 NP_006761 C/T F282S plus 23251087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 2q12-q13 macrophage receptor with collagenous structure 30611 rs6761637 MARCO 8685 2 119455293 NM_006770 NP_006761 C/T F282S plus 23251087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 2q12-q13 macrophage receptor with collagenous structure 30612 rs6761641 PASK 23178 2 241766775 NM_015148 NP_055963 A/C F1266C plus 10010980 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 30613 rs6761641 PASK 23178 2 241766775 NM_015148 NP_055963 A/C F1266C plus 10010980 1303 SEQUENOM CEPH CEPH (92) 92 0.14 123 "HapMap,doubleHit,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 30614 rs6761641 PASK 23178 2 241766775 NM_015148 NP_055963 A/C F1266C plus 23922873 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 30615 rs6761641 PASK 23178 2 241766775 NM_015148 NP_055963 A/C F1266C plus 23922873 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.4 123 "HapMap,doubleHit,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 30616 rs6761641 PASK 23178 2 241766775 NM_015148 NP_055963 A/C F1266C plus 23922873 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 2q37.3 PAS domain containing serine/threonine kinase 30617 rs6773138 SLC12A8 84561 3 126309098 NM_024628 NP_078904 C/T K541R plus 23276031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 3q21.2 "solute carrier family 12 (potassium/chloride transporters), member 8" 30618 rs6773138 SLC12A8 84561 3 126309098 NM_024628 NP_078904 C/T K541R plus 23276031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 3q21.2 "solute carrier family 12 (potassium/chloride transporters), member 8" 30619 rs6773138 SLC12A8 84561 3 126309098 NM_024628 NP_078904 C/T K541R plus 23276031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 3q21.2 "solute carrier family 12 (potassium/chloride transporters), member 8" 30620 rs6779094 HHLA2 11148 3 109563967 NM_007072 NP_009003 A/C S364R plus 10043021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30621 rs6779094 HHLA2 11148 3 109563967 NM_007072 NP_009003 A/C S364R plus 24314826 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30622 rs6779094 HHLA2 11148 3 109563967 NM_007072 NP_009003 A/C S364R plus 24314826 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 "HapMap,doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30623 rs6779094 HHLA2 11148 3 109563967 NM_007072 NP_009003 A/C S364R plus 24314826 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30624 rs6779254 HHLA2 11148 3 109554988 NM_007072 NP_009003 C/T I30T plus 24314753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30625 rs6779254 HHLA2 11148 3 109554988 NM_007072 NP_009003 C/T I30T plus 24314753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30626 rs6779254 HHLA2 11148 3 109554988 NM_007072 NP_009003 C/T I30T plus 24314753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 3q13.13 HERV-H LTR-associating 2 30627 rs6785067 FETUB 26998 3 187846748 NM_014375 NP_055190 A/G G202S plus 10053919 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,freq,cluster" 3q27 fetuin B 30628 rs6785067 FETUB 26998 3 187846748 NM_014375 NP_055190 A/G G202S plus 24160669 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3q27 fetuin B 30629 rs6785067 FETUB 26998 3 187846748 NM_014375 NP_055190 A/G G202S plus 24160669 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 "HapMap,doubleHit,freq,cluster" 3q27 fetuin B 30630 rs6785067 FETUB 26998 3 187846748 NM_014375 NP_055190 A/G G202S plus 24160669 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 "HapMap,doubleHit,freq,cluster" 3q27 fetuin B 30631 rs6787633 ADAMTS9 56999 3 64507516 NM_182920 NP_891550 C/G D1674E plus 23911076 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 30632 rs6787633 ADAMTS9 56999 3 64507516 NM_182920 NP_891550 C/G D1674E plus 23911076 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 30633 rs6787633 ADAMTS9 56999 3 64507516 NM_182920 NP_891550 C/G D1674E plus 23911076 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 "by doubleHit,freq,cluster" 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 30634 rs6788319 URP 257313 3 192482619 NM_198152 NP_937795 A/C S21I plus 23933351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 3q29 urotensin II-related peptide 30635 rs6788319 URP 257313 3 192482619 NM_198152 NP_937795 A/C S21I plus 23933351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 3q29 urotensin II-related peptide 30636 rs6788319 URP 257313 3 192482619 NM_198152 NP_937795 A/C S21I plus 23933351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 3q29 urotensin II-related peptide 30637 rs6804162 GUCA1C 9626 3 110122074 NM_005459 NP_005450 C/T M85V plus 23343525 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 30638 rs6804162 GUCA1C 9626 3 110122074 NM_005459 NP_005450 C/T M85V plus 23343525 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 30639 rs6804162 GUCA1C 9626 3 110122074 NM_005459 NP_005450 C/T M85V plus 23343525 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 3q13.1 guanylate cyclase activator 1C 30640 rs6807963 HCLS1 3059 3 122835944 NM_005335 NP_005326 C/T T235A plus 23322875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 3q13 hematopoietic cell-specific Lyn substrate 1 30641 rs6807963 HCLS1 3059 3 122835944 NM_005335 NP_005326 C/T T235A plus 23322875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 3q13 hematopoietic cell-specific Lyn substrate 1 30642 rs6807963 HCLS1 3059 3 122835944 NM_005335 NP_005326 C/T T235A plus 23322875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 3q13 hematopoietic cell-specific Lyn substrate 1 30643 rs6808056 CNTN6 27255 3 1295187 NM_014461 NP_055276 C/T F150S plus 23171153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p26-p25 contactin 6 30644 rs6808056 CNTN6 27255 3 1295187 NM_014461 NP_055276 C/T F150S plus 23171153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 3p26-p25 contactin 6 30645 rs6808056 CNTN6 27255 3 1295187 NM_014461 NP_055276 C/T F150S plus 23171153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p26-p25 contactin 6 30646 rs6809436 SENP7 57337 3 102660538 NM_020654 NP_065705 G/T K79Q plus 23296144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 3q12 SUMO1/sentrin specific protease 7 30647 rs6809436 SENP7 57337 3 102660538 NM_020654 NP_065705 G/T K79Q plus 23296144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 3q12 SUMO1/sentrin specific protease 7 30648 rs6809436 SENP7 57337 3 102660538 NM_020654 NP_065705 G/T K79Q plus 23296144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3q12 SUMO1/sentrin specific protease 7 30649 rs6835769 FRAS1 80144 4 79641873 NM_206841 NP_996672 C/T A817V plus 24248141 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.45 123 "by doubleHit,freq,cluster" 4q21.21 Fraser syndrome 1 30650 rs6835769 FRAS1 80144 4 79641873 NM_206841 NP_996672 C/T A817V plus 24248141 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.21 123 "by doubleHit,freq,cluster" 4q21.21 Fraser syndrome 1 30651 rs6835769 FRAS1 80144 4 79641873 NM_206841 NP_996672 C/T A817V plus 24248141 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.17 123 "by doubleHit,freq,cluster" 4q21.21 Fraser syndrome 1 30652 rs6836994 ANXA10 11199 4 169458424 NM_007193 NP_009124 A/C M71L plus 10149327 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 4q33 annexin A10 30653 rs6836994 ANXA10 11199 4 169458424 NM_007193 NP_009124 A/C M71L plus 24667522 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 4q33 annexin A10 30654 rs6836994 ANXA10 11199 4 169458424 NM_007193 NP_009124 A/C M71L plus 24667522 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 4q33 annexin A10 30655 rs6836994 ANXA10 11199 4 169458424 NM_007193 NP_009124 A/C M71L plus 24667522 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 4q33 annexin A10 30656 rs6842544 FBXW7 55294 4 153690164 NM_033632 NP_361014 C/T R133G plus 23686599 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q31.3 "F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)" 30657 rs6842544 FBXW7 55294 4 153690164 NM_033632 NP_361014 C/T R133G plus 23686599 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4q31.3 "F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)" 30658 rs6842544 FBXW7 55294 4 153690164 NM_033632 NP_361014 C/T R133G plus 23686599 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q31.3 "F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)" 30659 rs6858328 MAN2B2 23324 4 6716947 XM_052620 XP_052620 C/T R365C plus 23371576 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p16.2 "mannosidase, alpha, class 2B, member 2" 30660 rs6858328 MAN2B2 23324 4 6716947 XM_052620 XP_052620 C/T R365C plus 23371576 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 4p16.2 "mannosidase, alpha, class 2B, member 2" 30661 rs6858328 MAN2B2 23324 4 6716947 XM_052620 XP_052620 C/T R365C plus 23371576 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p16.2 "mannosidase, alpha, class 2B, member 2" 30662 rs6858712 CDHJ 54798 4 155613810 NM_017639 NP_060109 A/G S344L plus 23688742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 30663 rs6858712 CDHJ 54798 4 155613810 NM_017639 NP_060109 A/G S344L plus 23688742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 30664 rs6858712 CDHJ 54798 4 155613810 NM_017639 NP_060109 A/G S344L plus 23688742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 30665 rs6858913 PCDHA2 56146 5 140157024 NM_018905 NP_061728 C/T P764L plus 10189185 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q31 protocadherin alpha 2 30666 rs6858913 PCDHA2 56146 5 140157024 NM_031495 NP_113683 C/T P764L plus 10189185 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q31 protocadherin alpha 2 30667 rs6858913 PCDHA2 56146 5 140157024 NM_031496 NP_113684 C/T P764L plus 10189185 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q31 protocadherin alpha 2 30668 rs6860508 NLN 57486 5 65154494 NM_020726 NP_065777 C/T P704S plus 23260813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5q12.3 neurolysin (metallopeptidase M3 family) 30669 rs6860508 NLN 57486 5 65154494 NM_020726 NP_065777 C/T P704S plus 23260813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 5q12.3 neurolysin (metallopeptidase M3 family) 30670 rs6860508 NLN 57486 5 65154494 NM_020726 NP_065777 C/T P704S plus 23260813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5q12.3 neurolysin (metallopeptidase M3 family) 30671 rs6862252 ZNF608 57507 5 124011814 XM_114432 XP_114432 G/T T721N plus 24325578 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,freq" 5q23.2 zinc finger protein 608 30672 rs6862252 ZNF608 57507 5 124011814 XM_114432 XP_114432 G/T T721N plus 24325578 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq" 5q23.2 zinc finger protein 608 30673 rs6862252 ZNF608 57507 5 124011814 XM_114432 XP_114432 G/T T721N plus 24325578 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq" 5q23.2 zinc finger protein 608 30674 rs6863012 NLN 57486 5 65119857 NM_020726 NP_065777 A/G K372R plus 23260526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 5q12.3 neurolysin (metallopeptidase M3 family) 30675 rs6863012 NLN 57486 5 65119857 NM_020726 NP_065777 A/G K372R plus 23260526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 5q12.3 neurolysin (metallopeptidase M3 family) 30676 rs6863012 NLN 57486 5 65119857 NM_020726 NP_065777 A/G K372R plus 23260526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q12.3 neurolysin (metallopeptidase M3 family) 30677 rs6867460 PCDHGB5 56101 5 140758440 NM_018925 NP_061748 A/G G188S plus 10206106 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.17 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 5" 30678 rs6867460 PCDHGB5 56101 5 140758440 NM_032099 NP_115270 A/G G188S plus 10206106 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.17 119 "HapMap,doubleHit,freq,cluster" 5q31 "protocadherin gamma subfamily B, 5" 30679 rs6879322 RUFY1 80230 5 178940557 NM_025158 NP_079434 G/T H190Q plus 10229582 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q35.3 RUN and FYVE domain containing 1 30680 rs6883021 BRD8 10902 5 137516239 NM_139199 NP_631938 A/G L896P plus 23340179 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q31 bromodomain containing 8 30681 rs6883021 BRD8 10902 5 137516239 NM_139199 NP_631938 A/G L896P plus 23340179 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 5q31 bromodomain containing 8 30682 rs6883021 BRD8 10902 5 137516239 NM_139199 NP_631938 A/G L896P plus 23340179 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q31 bromodomain containing 8 30683 rs6890689 TTID 9499 5 137234459 NM_006790 NP_006781 A/C K74Q plus 10252161 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 "HapMap,doubleHit,cluster" 5q31 titin immunoglobulin domain protein (myotilin) 30684 rs6892205 SPINK5 11005 5 147455579 NM_006846 NP_006837 A/G Q267R plus 10255067 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 30685 rs6892205 SPINK5 11005 5 147455579 NM_006846 NP_006837 A/G Q267R plus 23959336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 30686 rs6892205 SPINK5 11005 5 147455579 NM_006846 NP_006837 A/G Q267R plus 23959336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.45 123 "HapMap,doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 30687 rs6892205 SPINK5 11005 5 147455579 NM_006846 NP_006837 A/G Q267R plus 23959336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 22 0.5 123 "HapMap,doubleHit,freq,cluster" 5q32 "serine protease inhibitor, Kazal type 5" 30688 rs6892971 SLC4A9 83697 5 139732057 NM_031467 NP_113655 C/T S892L plus 10256524 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q31 "solute carrier family 4, sodium bicarbonate cotransporter, member 9" 30689 rs6897932 IL7R 3575 5 35910332 NM_002185 NP_002176 C/T T244I plus 16336732 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.11 120 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 30690 rs6897932 IL7R 3575 5 35910332 NM_002185 NP_002176 C/T T244I plus 16336732 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.33 120 "by doubleHit,freq,cluster" 5p13 interleukin 7 receptor 30691 rs6904029 HCG9 10255 6 30051046 NM_005844 NP_005835 A/G G47R plus 23923411 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.34 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 30692 rs6904029 HCG9 10255 6 30051046 NM_005844 NP_005835 A/G G47R plus 23923411 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 30693 rs6904029 HCG9 10255 6 30051046 NM_005844 NP_005835 A/G G47R plus 23923411 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "by doubleHit,freq,cluster" 6p21.3 HLA complex group 9 30694 rs6906499 NUP153 9972 6 17773458 NM_005124 NP_005115 C/G N402K plus 23995151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq" 6p22.3 nucleoporin 153kDa 30695 rs6906499 NUP153 9972 6 17773458 NM_005124 NP_005115 C/G N402K plus 23995151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq" 6p22.3 nucleoporin 153kDa 30696 rs6906499 NUP153 9972 6 17773458 NM_005124 NP_005115 C/G N402K plus 23995151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq" 6p22.3 nucleoporin 153kDa 30697 rs6907125 GPR111 222611 6 47754801 NM_153839 NP_722581 A/G Q148R plus 10283844 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.36 123 "HapMap,doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 30698 rs6907125 GPR111 222611 6 47754801 NM_153839 NP_722581 A/G Q148R plus 23334435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 30699 rs6907125 GPR111 222611 6 47754801 NM_153839 NP_722581 A/G Q148R plus 23334435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 30700 rs6907125 GPR111 222611 6 47754801 NM_153839 NP_722581 A/G Q148R plus 23334435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 30701 rs6909714 DST 667 6 56593445 NM_001723 NP_001714 A/G H1116Y plus 10288789 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 30702 rs6910140 COL9A1 1297 6 71000978 NM_001851 NP_001842 C/T M767V plus 23364345 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30703 rs6910140 COL9A1 1297 6 71000978 NM_001851 NP_001842 C/T M767V plus 23364345 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30704 rs6910140 COL9A1 1297 6 71000978 NM_001851 NP_001842 C/T M767V plus 23364345 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30705 rs6910140 COL9A1 1297 6 71000978 NM_078485 NP_511040 C/T M524V plus 23364345 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30706 rs6910140 COL9A1 1297 6 71000978 NM_078485 NP_511040 C/T M524V plus 23364345 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30707 rs6910140 COL9A1 1297 6 71000978 NM_078485 NP_511040 C/T M524V plus 23364345 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 6q12-q14 "collagen, type IX, alpha 1" 30708 rs6910541 ZNF292 23036 6 88026199 XM_048070 XP_048070 A/G V2217I plus 10290363 1303 SEQUENOM CEPH CEPH (92) 92 0.1 121 "by doubleHit,freq,cluster" 6q15 zinc finger protein 292 30709 rs6911096 SYNE1 23345 6 152744148 NM_033071 NP_149062 A/T S4525T plus 24493328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30710 rs6911096 SYNE1 23345 6 152744148 NM_033071 NP_149062 A/T S4525T plus 24493328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30711 rs6911096 SYNE1 23345 6 152744148 NM_033071 NP_149062 A/T S4525T plus 24493328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30712 rs6911096 SYNE1 23345 6 152744148 NM_182961 NP_892006 A/T S4596T plus 24493328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30713 rs6911096 SYNE1 23345 6 152744148 NM_182961 NP_892006 A/T S4596T plus 24493328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30714 rs6911096 SYNE1 23345 6 152744148 NM_182961 NP_892006 A/T S4596T plus 24493328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 30715 rs6919947 NCOA7 135112 6 126252088 NM_181782 NP_861447 G/T S399A plus 24400308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 6q22.33 nuclear receptor coactivator 7 30716 rs6919947 NCOA7 135112 6 126252088 NM_181782 NP_861447 G/T S399A plus 24400308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6q22.33 nuclear receptor coactivator 7 30717 rs6919947 NCOA7 135112 6 126252088 NM_181782 NP_861447 G/T S399A plus 24400308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 6q22.33 nuclear receptor coactivator 7 30718 rs6923761 GLP1R 2740 6 39142050 NM_002062 NP_002053 A/G G168S plus 12587299 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.34 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 30719 rs6923761 GLP1R 2740 6 39142050 NM_002062 NP_002053 A/G G168S plus 14323056 693 EGP_SNPS PDR90 NIHPDR 180 0.14 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 30720 rs6923761 GLP1R 2740 6 39142050 NM_002062 NP_002053 A/G G168S plus 24439537 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 30721 rs6923761 GLP1R 2740 6 39142050 NM_002062 NP_002053 A/G G168S plus 24439537 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 30722 rs6923761 GLP1R 2740 6 39142050 NM_002062 NP_002053 A/G G168S plus 24439537 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6p21 glucagon-like peptide 1 receptor 30723 rs6924628 GPLD1 2822 6 24562371 NM_001503 NP_001494 C/T G396S plus 23409200 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 30724 rs6924628 GPLD1 2822 6 24562371 NM_001503 NP_001494 C/T G396S plus 23409200 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 30725 rs6924628 GPLD1 2822 6 24562371 NM_001503 NP_001494 C/T G396S plus 23409200 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by doubleHit,freq,cluster" 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 30726 rs6925151 RAET1E 135250 6 150302837 NM_139165 NP_631904 C/T R128H plus 23494143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 30727 rs6925151 RAET1E 135250 6 150302837 NM_139165 NP_631904 C/T R128H plus 23494143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 30728 rs6925151 RAET1E 135250 6 150302837 NM_139165 NP_631904 C/T R128H plus 23494143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 30729 rs6925178 ZNF311 282890 6 29081194 XM_212581 XP_212581 A/C D203Y plus 23294545 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30730 rs6925178 ZNF311 282890 6 29081194 XM_212581 XP_212581 A/C D203Y plus 23294545 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30731 rs6925178 ZNF311 282890 6 29081194 XM_212581 XP_212581 A/C D203Y plus 23294545 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6p21.33 zinc finger protein 311 30732 rs6926570 ENPP5 59084 6 46243448 NM_021572 NP_067547 C/T I171V plus 24000776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 30733 rs6926570 ENPP5 59084 6 46243448 NM_021572 NP_067547 C/T I171V plus 24000776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 30734 rs6926570 ENPP5 59084 6 46243448 NM_021572 NP_067547 C/T I171V plus 24000776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 30735 rs6926628 HLA-DMA 3108 6 33025476 NM_006120 NP_006111 C/G G181A plus 24169457 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 "major histocompatibility complex, class II, DM alpha" 30736 rs6926628 HLA-DMA 3108 6 33025476 NM_006120 NP_006111 C/G G181A plus 24169457 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DM alpha" 30737 rs6926628 HLA-DMA 3108 6 33025476 NM_006120 NP_006111 C/G G181A plus 24169457 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 "major histocompatibility complex, class II, DM alpha" 30738 rs6927567 RSHL3 345895 6 117057427 XM_496824 XP_496824 A/G R556H plus 23980322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 30739 rs6927567 RSHL3 345895 6 117057427 XM_496824 XP_496824 A/G R556H plus 23980322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 30740 rs6927567 RSHL3 345895 6 117057427 XM_496824 XP_496824 A/G R556H plus 23980322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 30741 rs6927706 PBOV1 59351 6 138581008 NM_021635 NP_067648 A/G I73T plus 24030357 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 30742 rs6927706 PBOV1 59351 6 138581008 NM_021635 NP_067648 A/G I73T plus 24030357 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 30743 rs6927706 PBOV1 59351 6 138581008 NM_021635 NP_067648 A/G I73T plus 24030357 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 30744 rs6929069 DSP 1832 6 7526635 NM_004415 NP_004406 A/G R1738Q plus 23293421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6p24 desmoplakin 30745 rs6929069 DSP 1832 6 7526635 NM_004415 NP_004406 A/G R1738Q plus 23293421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by cluster,freq" 6p24 desmoplakin 30746 rs6929069 DSP 1832 6 7526635 NM_004415 NP_004406 A/G R1738Q plus 23293421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 6p24 desmoplakin 30747 rs6930932 ANKS1 23294 6 35060888 NM_015245 NP_056060 A/C A355D plus 10328418 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 6p21.31 ankyrin repeat and sterile alpha motif domain containing 1 30748 rs6934603 GJB7 375519 6 88050734 NM_198568 NP_940970 A/G F206L plus 23956395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq,cluster" 6q15 "gap junction protein, beta 7" 30749 rs6934603 GJB7 375519 6 88050734 NM_198568 NP_940970 A/G F206L plus 23956395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,freq,cluster" 6q15 "gap junction protein, beta 7" 30750 rs6934603 GJB7 375519 6 88050734 NM_198568 NP_940970 A/G F206L plus 23956395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 6q15 "gap junction protein, beta 7" 30751 rs6941356 ZNF292 23036 6 88024355 XM_048070 XP_048070 A/G N1602S plus 24013492 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q15 zinc finger protein 292 30752 rs6941356 ZNF292 23036 6 88024355 XM_048070 XP_048070 A/G N1602S plus 24013492 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 6q15 zinc finger protein 292 30753 rs6941356 ZNF292 23036 6 88024355 XM_048070 XP_048070 A/G N1602S plus 24013492 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 6q15 zinc finger protein 292 30754 rs6941583 POLH 5429 6 43690069 NM_006502 NP_006493 A/T M647L plus 12709528 693 EGP_SNPS PDR90 NIHPDR 178 0.08 119 "by doubleHit,freq,cluster" 6p21.1 "polymerase (DNA directed), eta" 30755 rs6945306 STK31 56164 7 23530402 NM_031414 NP_113602 C/G Q71H plus 10355209 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 121 "HapMap,freq,cluster" 7p15.3 serine/threonine kinase 31 30756 rs6945306 STK31 56164 7 23530402 NM_032944 NP_116562 C/G Q48H plus 10355209 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 121 "HapMap,freq,cluster" 7p15.3 serine/threonine kinase 31 30757 rs6947097 CARD4 10392 7 30269614 NM_006092 NP_006083 A/G A55V plus 10358508 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 7p15-p14 "caspase recruitment domain family, member 4" 30758 rs6949056 NYD-SP18 84691 7 127953084 NM_032599 NP_115988 C/T S228L plus 24003135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 7q32.2-q32.3 testes development-related NYD-SP18 30759 rs6949056 NYD-SP18 84691 7 127953084 NM_032599 NP_115988 C/T S228L plus 24003135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 7q32.2-q32.3 testes development-related NYD-SP18 30760 rs6949056 NYD-SP18 84691 7 127953084 NM_032599 NP_115988 C/T S228L plus 24003135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 7q32.2-q32.3 testes development-related NYD-SP18 30761 rs6949082 HYAL4 23553 7 123108847 NM_012269 NP_036401 G/T A346S plus 22597765 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 7q31.3 hyaluronoglucosaminidase 4 30762 rs6949082 HYAL4 23553 7 123108847 NM_012269 NP_036401 G/T A346S plus 24482139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 7q31.3 hyaluronoglucosaminidase 4 30763 rs6949082 HYAL4 23553 7 123108847 NM_012269 NP_036401 G/T A346S plus 24482139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 7q31.3 hyaluronoglucosaminidase 4 30764 rs6949082 HYAL4 23553 7 123108847 NM_012269 NP_036401 G/T A346S plus 24482139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 7q31.3 hyaluronoglucosaminidase 4 30765 rs6951159 MLL3 58508 7 151316571 NM_021230 NP_067053 C/T T1069A plus 10366021 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 7q34-q36 myeloid/lymphoid or mixed-lineage leukemia 3 30766 rs6951159 MLL3 58508 7 151316571 NM_170606 NP_733751 C/T T2008A plus 10366021 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 7q34-q36 myeloid/lymphoid or mixed-lineage leukemia 3 30767 rs6954345 PON2 5445 7 94679426 NM_000305 NP_000296 C/G S311C plus 10371805 1303 SEQUENOM CEPH CEPH (92) 92 0.23 123 "by cluster,freq" 7q21.3 paraoxonase 2 30768 rs6954345 PON2 5445 7 94679426 NM_000305 NP_000296 C/G S311C plus 23760919 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 7q21.3 paraoxonase 2 30769 rs6954345 PON2 5445 7 94679426 NM_000305 NP_000296 C/G S311C plus 23760919 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 7q21.3 paraoxonase 2 30770 rs6954345 PON2 5445 7 94679426 NM_000305 NP_000296 C/G S311C plus 23760919 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 7q21.3 paraoxonase 2 30771 rs6958498 NRCAM 4897 7 107428564 NM_005010 NP_005001 C/G P539A plus 10379607 1303 SEQUENOM CEPH CEPH (92) 92 0.17 121 "by doubleHit,freq,cluster" 7q31.1-q31.2 neuronal cell adhesion molecule 30772 rs6960270 GALNT15 168391 7 151117720 NM_145292 NP_660335 C/T C124R plus 10382862 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,doubleHit,freq,cluster" 7q36.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 30773 rs6960270 GALNT15 168391 7 151117720 NM_145292 NP_660335 C/T C124R plus 23308923 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 7q36.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 30774 rs6960270 GALNT15 168391 7 151117720 NM_145292 NP_660335 C/T C124R plus 23308923 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 7q36.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 30775 rs6960270 GALNT15 168391 7 151117720 NM_145292 NP_660335 C/T C124R plus 23308923 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 7q36.2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 30776 rs6961412 LANCL2 55915 7 55233710 NM_018697 NP_061167 A/G I74V plus 10384929 885 TSC-CSHL HapMap-CEPH-30-trios 104 1 116 HapMap 7q31.1-q31.33 LanC lantibiotic synthetase component C-like 2 (bacterial) 30777 rs6964535 PAPOLB 56903 7 4673406 NM_020144 NP_064529 C/T K426R plus 10390796 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 123 "HapMap,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 30778 rs6964535 PAPOLB 56903 7 4673406 NM_020144 NP_064529 C/T K426R plus 23516408 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 30779 rs6964535 PAPOLB 56903 7 4673406 NM_020144 NP_064529 C/T K426R plus 23516408 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 30780 rs6964535 PAPOLB 56903 7 4673406 NM_020144 NP_064529 C/T K426R plus 23516408 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,freq,cluster" 7p22.2 poly(A) polymerase beta (testis specific) 30781 rs6964587 AKAP9 10142 7 91275271 NM_005751 NP_005742 G/T M463I plus 23493652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30782 rs6964587 AKAP9 10142 7 91275271 NM_005751 NP_005742 G/T M463I plus 23493652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30783 rs6964587 AKAP9 10142 7 91275271 NM_005751 NP_005742 G/T M463I plus 23493652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30784 rs6964587 AKAP9 10142 7 91275271 NM_147166 NP_671695 G/T M475I plus 23493652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30785 rs6964587 AKAP9 10142 7 91275271 NM_147166 NP_671695 G/T M475I plus 23493652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30786 rs6964587 AKAP9 10142 7 91275271 NM_147166 NP_671695 G/T M475I plus 23493652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30787 rs6964587 AKAP9 10142 7 91275271 NM_147171 NP_671700 G/T M475I plus 23493652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30788 rs6964587 AKAP9 10142 7 91275271 NM_147171 NP_671700 G/T M475I plus 23493652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30789 rs6964587 AKAP9 10142 7 91275271 NM_147171 NP_671700 G/T M475I plus 23493652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30790 rs6964587 AKAP9 10142 7 91275271 NM_147185 NP_671714 G/T M463I plus 23493652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30791 rs6964587 AKAP9 10142 7 91275271 NM_147185 NP_671714 G/T M463I plus 23493652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30792 rs6964587 AKAP9 10142 7 91275271 NM_147185 NP_671714 G/T M463I plus 23493652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 7q21-q22 A kinase (PRKA) anchor protein (yotiao) 9 30793 rs6971091 NYD-SP18 84691 7 127957238 NM_032599 NP_115988 A/G E242K plus 10403173 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.27 120 "HapMap,doubleHit,freq,cluster" 7q32.2-q32.3 testes development-related NYD-SP18 30794 rs6972158 GPR154 387129 7 34662422 NM_207172 NP_997055 A/G Q344R plus 23521647 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 30795 rs6972158 GPR154 387129 7 34662422 NM_207172 NP_997055 A/G Q344R plus 23521647 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 30796 rs6972158 GPR154 387129 7 34662422 NM_207172 NP_997055 A/G Q344R plus 23521647 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 7p14.3 G protein-coupled receptor 154 30797 rs6973420 CALD1 800 7 134075965 NM_033138 NP_149129 A/G H397R plus 10407496 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 123 "HapMap,doubleHit,freq,cluster" 7q33 caldesmon 1 30798 rs6973420 CALD1 800 7 134075965 NM_033138 NP_149129 A/G H397R plus 24510763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.48 123 "HapMap,doubleHit,freq,cluster" 7q33 caldesmon 1 30799 rs6973420 CALD1 800 7 134075965 NM_033138 NP_149129 A/G H397R plus 24510763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 7q33 caldesmon 1 30800 rs6973420 CALD1 800 7 134075965 NM_033138 NP_149129 A/G H397R plus 24510763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 7q33 caldesmon 1 30801 rs6976847 HOXA4 3201 7 26942296 NM_002141 NP_002132 G/T T251P plus 10413826 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 7p15-p14 homeo box A4 30802 rs6980476 CGI-90 51115 8 87588431 NM_016033 NP_057117 G/T K52N plus 23809560 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.23 123 "by doubleHit,freq,cluster" 8q21.2 CGI-90 protein 30803 rs6980476 CGI-90 51115 8 87588431 NM_016033 NP_057117 G/T K52N plus 23809560 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 8q21.2 CGI-90 protein 30804 rs6980476 CGI-90 51115 8 87588431 NM_016033 NP_057117 G/T K52N plus 23809560 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 "by doubleHit,freq,cluster" 8q21.2 CGI-90 protein 30805 rs6980553 TACC1 6867 8 38796647 NM_006283 NP_006274 C/T I243T plus 10420634 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 8p11 "transforming, acidic coiled-coil containing protein 1" 30806 rs6980553 TACC1 6867 8 38796647 NM_006283 NP_006274 C/T I243T plus 23459307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p11 "transforming, acidic coiled-coil containing protein 1" 30807 rs6980553 TACC1 6867 8 38796647 NM_006283 NP_006274 C/T I243T plus 23459307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 8p11 "transforming, acidic coiled-coil containing protein 1" 30808 rs6980553 TACC1 6867 8 38796647 NM_006283 NP_006274 C/T I243T plus 23459307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p11 "transforming, acidic coiled-coil containing protein 1" 30809 rs6982284 ADAM28 10863 8 24249133 NM_021777 NP_068547 C/T A534V plus 10423811 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 116 "HapMap,doubleHit" 8p21.2 a disintegrin and metalloproteinase domain 28 30810 rs6998760 PSKH2 85481 8 87145636 NM_033126 NP_149117 A/C A176S plus 24027037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 8q21.2 protein serine kinase H2 30811 rs6998760 PSKH2 85481 8 87145636 NM_033126 NP_149117 A/C A176S plus 24027037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 8q21.2 protein serine kinase H2 30812 rs6998760 PSKH2 85481 8 87145636 NM_033126 NP_149117 A/C A176S plus 24027037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 8q21.2 protein serine kinase H2 30813 rs7002384 TRPS1 7227 8 116685371 NM_014112 NP_054831 A/G S654L plus 10460615 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 8q24.12 trichorhinophalangeal syndrome I 30814 rs7007084 ADAMDEC1 27299 8 24307604 NM_014479 NP_055294 C/T M121T plus 10469114 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 123 "HapMap,doubleHit,freq,cluster" 8p21.2 "ADAM-like, decysin 1" 30815 rs7007084 ADAMDEC1 27299 8 24307604 NM_014479 NP_055294 C/T M121T plus 23508229 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 8p21.2 "ADAM-like, decysin 1" 30816 rs7007084 ADAMDEC1 27299 8 24307604 NM_014479 NP_055294 C/T M121T plus 23508229 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 8p21.2 "ADAM-like, decysin 1" 30817 rs7007084 ADAMDEC1 27299 8 24307604 NM_014479 NP_055294 C/T M121T plus 23508229 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p21.2 "ADAM-like, decysin 1" 30818 rs7009117 PCM1 5108 8 17865038 NM_006197 NP_006188 G/T G871V plus 23736491 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p22-p21.3 pericentriolar material 1 30819 rs7009117 PCM1 5108 8 17865038 NM_006197 NP_006188 G/T G871V plus 23736491 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by cluster,freq" 8p22-p21.3 pericentriolar material 1 30820 rs7009117 PCM1 5108 8 17865038 NM_006197 NP_006188 G/T G871V plus 23736491 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p22-p21.3 pericentriolar material 1 30821 rs7014851 HR 55806 8 22032655 NM_005144 NP_005135 C/T T1022A plus 10483564 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 116 "HapMap,doubleHit" 8p21.2 hairless homolog (mouse) 30822 rs7014851 HR 55806 8 22032655 NM_018411 NP_060881 C/T T1022A plus 10483564 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 116 "HapMap,doubleHit" 8p21.2 hairless homolog (mouse) 30823 rs7017102 OPLAH 26873 8 145190636 XM_291266 XP_291266 A/G W64R plus 10487748 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 116 "HapMap,doubleHit,freq" 8q24.3 5-oxoprolinase (ATP-hydrolysing) 30824 rs7017776 ChGn 55790 8 19407048 NM_018371 NP_060841 C/T S193N plus 10489004 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.18 123 "HapMap,doubleHit,freq,cluster" 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 30825 rs7017776 ChGn 55790 8 19407048 NM_018371 NP_060841 C/T S193N plus 23711507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 30826 rs7017776 ChGn 55790 8 19407048 NM_018371 NP_060841 C/T S193N plus 23711507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 30827 rs7017776 ChGn 55790 8 19407048 NM_018371 NP_060841 C/T S193N plus 23711507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq,cluster" 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 30828 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 14910990 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30829 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 14910990 902 AFFY Caucasian 22 0.27 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30830 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 14910990 903 AFFY Asian 12 0.25 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30831 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 14910990 904 AFFY CEPH 10 0.3 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30832 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 14910990 905 AFFY PDpanel 44 0.18 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30833 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 24698582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30834 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 24698582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30835 rs7021366 CTNNAL1 8727 9 108807225 NM_003798 NP_003789 C/G E527Q plus 24698582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 30836 rs7023954 MTAP 4507 9 21806758 NM_002451 NP_002442 A/G V56I plus 24692235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 9p21 methylthioadenosine phosphorylase 30837 rs7023954 MTAP 4507 9 21806758 NM_002451 NP_002442 A/G V56I plus 24692235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 9p21 methylthioadenosine phosphorylase 30838 rs7023954 MTAP 4507 9 21806758 NM_002451 NP_002442 A/G V56I plus 24692235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 9p21 methylthioadenosine phosphorylase 30839 rs7025559 NOL8 55035 9 92152462 NM_017948 NP_060418 C/G D841E plus 10503020 1303 SEQUENOM CEPH CEPH (92) 92 0.03 120 "by doubleHit,freq,cluster" 9q22.32 nucleolar protein 8 30840 rs7030899 CDW92 23446 9 105227318 NM_080546 NP_536856 G/T S644A plus 23408469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 9q31.2 CDW92 antigen 30841 rs7030899 CDW92 23446 9 105227318 NM_080546 NP_536856 G/T S644A plus 23408469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 9q31.2 CDW92 antigen 30842 rs7030899 CDW92 23446 9 105227318 NM_080546 NP_536856 G/T S644A plus 23408469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9q31.2 CDW92 antigen 30843 rs7036635 CER1 9350 9 14710357 NM_005454 NP_005445 C/T V179I plus 23542758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 30844 rs7036635 CER1 9350 9 14710357 NM_005454 NP_005445 C/T V179I plus 23542758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 30845 rs7036635 CER1 9350 9 14710357 NM_005454 NP_005445 C/T V179I plus 23542758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 30846 rs7040838 SH3GLB2 56904 9 128851644 NM_020145 NP_064530 A/T C267S plus 10530917 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 9q34 SH3-domain GRB2-like endophilin B2 30847 rs7048607 COL27A1 85301 9 114107263 NM_032888 NP_116277 A/C P1116Q plus 23525160 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 30848 rs7048607 COL27A1 85301 9 114107263 NM_032888 NP_116277 A/C P1116Q plus 23525160 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 30849 rs7048607 COL27A1 85301 9 114107263 NM_032888 NP_116277 A/C P1116Q plus 23525160 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 9q33.1 "collagen, type XXVII, alpha 1" 30850 rs7068874 ZNF37B 256112 10 42335788 XM_497219 XP_497219 G/T K291N plus 24090883 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 10q11.21 zinc finger protein 37b (KOX 21) 30851 rs7068874 ZNF37B 256112 10 42335788 XM_497219 XP_497219 G/T K291N plus 24090883 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 10q11.21 zinc finger protein 37b (KOX 21) 30852 rs7068874 ZNF37B 256112 10 42335788 XM_497219 XP_497219 G/T K291N plus 24090883 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 10q11.21 zinc finger protein 37b (KOX 21) 30853 rs7074847 SPAG6 9576 10 22715863 NM_012443 NP_036575 A/G Q216R plus 23443559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30854 rs7074847 SPAG6 9576 10 22715863 NM_012443 NP_036575 A/G Q216R plus 23443559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30855 rs7074847 SPAG6 9576 10 22715863 NM_012443 NP_036575 A/G Q216R plus 23443559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30856 rs7074847 SPAG6 9576 10 22715863 NM_172242 NP_758442 A/G Q216R plus 23443559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30857 rs7074847 SPAG6 9576 10 22715863 NM_172242 NP_758442 A/G Q216R plus 23443559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30858 rs7074847 SPAG6 9576 10 22715863 NM_172242 NP_758442 A/G Q216R plus 23443559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10p12.2 sperm associated antigen 6 30859 rs7075840 SH2D4B 387694 10 82353384 NM_207372 NP_997255 A/G H238R plus 24112802 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 10q23.1 SH2 domain containing 4B 30860 rs7075840 SH2D4B 387694 10 82353384 NM_207372 NP_997255 A/G H238R plus 24112802 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 10q23.1 SH2 domain containing 4B 30861 rs7075840 SH2D4B 387694 10 82353384 NM_207372 NP_997255 A/G H238R plus 24112802 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 10q23.1 SH2 domain containing 4B 30862 rs7076156 ZNF365 22891 10 64085190 NM_199452 NP_955524 A/G T62A plus 24497496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q21.2 zinc finger protein 365 30863 rs7076156 ZNF365 22891 10 64085190 NM_199452 NP_955524 A/G T62A plus 24497496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 10q21.2 zinc finger protein 365 30864 rs7076156 ZNF365 22891 10 64085190 NM_199452 NP_955524 A/G T62A plus 24497496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 10q21.2 zinc finger protein 365 30865 rs7077408 PNLIPRP3 119548 10 118218753 XM_058404 XP_058404 C/T F332L plus 23645546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 30866 rs7077408 PNLIPRP3 119548 10 118218753 XM_058404 XP_058404 C/T F332L plus 23645546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 30867 rs7077408 PNLIPRP3 119548 10 118218753 XM_058404 XP_058404 C/T F332L plus 23645546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q26.12 pancreatic lipase-related protein 3 30868 rs7079388 UPF2 26019 10 12086552 NM_015542 NP_056357 C/T N496S plus 10603412 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 116 "HapMap,freq" 10p14-p13 UPF2 regulator of nonsense transcripts homolog (yeast) 30869 rs7079388 UPF2 26019 10 12086552 NM_080599 NP_542166 C/T N496S plus 10603412 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.17 116 "HapMap,freq" 10p14-p13 UPF2 regulator of nonsense transcripts homolog (yeast) 30870 rs7080536 HABP2 3026 10 115338036 NM_004132 NP_004123 A/G G534E plus 16362064 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.02 120 "by cluster,freq" 10q26.11 hyaluronan binding protein 2 30871 rs7080536 HABP2 3026 10 115338036 NM_004132 NP_004123 A/G G534E plus 16362064 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 120 "by cluster,freq" 10q26.11 hyaluronan binding protein 2 30872 rs7080681 ABCC2 1244 10 101550159 NM_000392 NP_000383 A/G R353H plus 12580176 892 PHARMGKB_PMT PA128307340 494 0.01 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 30873 rs7080681 ABCC2 1244 10 101550159 NM_000392 NP_000383 A/G R353H plus 23596921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 30874 rs7080681 ABCC2 1244 10 101550159 NM_000392 NP_000383 A/G R353H plus 23596921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 30875 rs7080681 ABCC2 1244 10 101550159 NM_000392 NP_000383 A/G R353H plus 23596921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 30876 rs7081726 PDCD4 27250 10 112631043 NM_014456 NP_055271 A/G I36V plus 23517157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30877 rs7081726 PDCD4 27250 10 112631043 NM_014456 NP_055271 A/G I36V plus 23517157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30878 rs7081726 PDCD4 27250 10 112631043 NM_014456 NP_055271 A/G I36V plus 23517157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30879 rs7081726 PDCD4 27250 10 112631043 NM_145341 NP_663314 A/G I25V plus 23517157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30880 rs7081726 PDCD4 27250 10 112631043 NM_145341 NP_663314 A/G I25V plus 23517157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30881 rs7081726 PDCD4 27250 10 112631043 NM_145341 NP_663314 A/G I25V plus 23517157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 10q24 programmed cell death 4 (neoplastic transformation inhibitor) 30882 rs7083622 MKI67 4288 10 129793084 NM_002417 NP_002408 G/T T2337N plus 10611413 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 120 "HapMap,doubleHit,freq,cluster" 10q25-qter antigen identified by monoclonal antibody Ki-67 30883 rs7094973 ANKRD2 26287 10 99327562 NM_020349 NP_065082 A/G A62T plus 16503786 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.28 123 "HapMap,doubleHit,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 2 (stretch responsive muscle) 30884 rs7094973 ANKRD2 26287 10 99327562 NM_020349 NP_065082 A/G A62T plus 24090746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 2 (stretch responsive muscle) 30885 rs7094973 ANKRD2 26287 10 99327562 NM_020349 NP_065082 A/G A62T plus 24090746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 2 (stretch responsive muscle) 30886 rs7094973 ANKRD2 26287 10 99327562 NM_020349 NP_065082 A/G A62T plus 24090746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 10q23.31-q23.32 ankyrin repeat domain 2 (stretch responsive muscle) 30887 rs7099565 TRUB1 142940 10 116709533 NM_139169 NP_631908 A/G R167K plus 10641904 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.4 123 "HapMap,doubleHit,freq,cluster" 10q26.11 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 30888 rs7099565 TRUB1 142940 10 116709533 NM_139169 NP_631908 A/G R167K plus 10641904 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,freq,cluster" 10q26.11 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 30889 rs7099565 TRUB1 142940 10 116709533 NM_139169 NP_631908 A/G R167K plus 24327609 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.47 123 "HapMap,doubleHit,freq,cluster" 10q26.11 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 30890 rs7099565 TRUB1 142940 10 116709533 NM_139169 NP_631908 A/G R167K plus 24327609 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 10q26.11 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 30891 rs7099565 TRUB1 142940 10 116709533 NM_139169 NP_631908 A/G R167K plus 24327609 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 32 0.06 123 "HapMap,doubleHit,freq,cluster" 10q26.11 TruB pseudouridine (psi) synthase homolog 1 (E. coli) 30892 rs7101919 OR52D1 390066 11 5467264 XM_372359 XP_372359 C/T I251T plus 24532988 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 30893 rs7101919 OR52D1 390066 11 5467264 XM_372359 XP_372359 C/T I251T plus 24532988 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 30894 rs7101919 OR52D1 390066 11 5467264 XM_372359 XP_372359 C/T I251T plus 24532988 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 30895 rs7102464 CMT4B2 81846 11 9836414 NM_030962 NP_112224 C/T E679K plus 24530274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 11p15.3 "Charcot-Marie-Tooth neuropathy 4B2 (autosomal recessive, with myelin outfolding)" 30896 rs7102464 CMT4B2 81846 11 9836414 NM_030962 NP_112224 C/T E679K plus 24530274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.3 "Charcot-Marie-Tooth neuropathy 4B2 (autosomal recessive, with myelin outfolding)" 30897 rs7102464 CMT4B2 81846 11 9836414 NM_030962 NP_112224 C/T E679K plus 24530274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.3 "Charcot-Marie-Tooth neuropathy 4B2 (autosomal recessive, with myelin outfolding)" 30898 rs7102536 OR2AG2 338755 11 6746682 XM_291980 XP_291980 C/T Y28C plus 24517215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 30899 rs7102536 OR2AG2 338755 11 6746682 XM_291980 XP_291980 C/T Y28C plus 24517215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 30900 rs7102536 OR2AG2 338755 11 6746682 XM_291980 XP_291980 C/T Y28C plus 24517215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 30901 rs7103126 MYEOV 26579 11 68819969 NM_138768 NP_620123 C/T V159A plus 10648994 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,doubleHit,freq" 11q13 myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 30902 rs7103126 MYEOV 26579 11 68819969 NM_138768 NP_620123 C/T V159A plus 24175952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq" 11q13 myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 30903 rs7103126 MYEOV 26579 11 68819969 NM_138768 NP_620123 C/T V159A plus 24175952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq" 11q13 myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 30904 rs7103126 MYEOV 26579 11 68819969 NM_138768 NP_620123 C/T V159A plus 24175952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 22 0.5 123 "HapMap,doubleHit,freq" 11q13 myeloma overexpressed gene (in a subset of t(11;14) positive multiple myelomas) 30905 rs7104156 PC 5091 11 66395828 NM_000920 NP_000911 A/T H76L plus 10651061 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 11q13.4-q13.5 pyruvate carboxylase 30906 rs7104156 PC 5091 11 66395828 NM_022172 NP_071504 A/T H76L plus 10651061 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 11q13.4-q13.5 pyruvate carboxylase 30907 rs7106047 ODZ4 26011 11 78060580 XM_166254 XP_166254 A/C M2583R plus 10654839 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.26 123 "HapMap,doubleHit,freq,cluster" 11q13.4 odd Oz/ten-m homolog 4 30908 rs7106047 ODZ4 26011 11 78060580 XM_166254 XP_166254 A/C M2583R plus 24602549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.37 123 "HapMap,doubleHit,freq,cluster" 11q13.4 odd Oz/ten-m homolog 4 30909 rs7106047 ODZ4 26011 11 78060580 XM_166254 XP_166254 A/C M2583R plus 24602549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.18 123 "HapMap,doubleHit,freq,cluster" 11q13.4 odd Oz/ten-m homolog 4 30910 rs7106047 ODZ4 26011 11 78060580 XM_166254 XP_166254 A/C M2583R plus 24602549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 11q13.4 odd Oz/ten-m homolog 4 30911 rs7106300 OR52E5 390082 11 5879283 XM_372369 XP_372369 C/T P238L plus 23528159 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 30912 rs7106300 OR52E5 390082 11 5879283 XM_372369 XP_372369 C/T P238L plus 23528159 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 30913 rs7106300 OR52E5 390082 11 5879283 XM_372369 XP_372369 C/T P238L plus 23528159 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 30914 rs7108225 OR51A7 119687 11 4885417 XM_061619 XP_061619 C/T M81T plus 24527193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 30915 rs7108225 OR51A7 119687 11 4885417 XM_061619 XP_061619 C/T M81T plus 24527193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 30916 rs7108225 OR51A7 119687 11 4885417 XM_061619 XP_061619 C/T M81T plus 24527193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 30917 rs7110845 POU2F3 25833 11 119680959 NM_014352 NP_055167 A/G H152R plus 10664391 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 11q23.3 "POU domain, class 2, transcription factor 3" 30918 rs7111528 OTOG 340990 11 17589227 XM_291816 XP_291816 C/T T953M plus 23640575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 30919 rs7111528 OTOG 340990 11 17589227 XM_291816 XP_291816 C/T T953M plus 23640575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 30920 rs7111528 OTOG 340990 11 17589227 XM_291816 XP_291816 C/T T953M plus 23640575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 30921 rs7116130 PSMD13 5719 11 234129 NM_175932 NP_787128 A/G R35W minus 24117440 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30922 rs7116130 PSMD13 5719 11 234129 NM_175932 NP_787128 A/G R35W minus 24117440 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30923 rs7116130 PSMD13 5719 11 234129 NM_175932 NP_787128 A/G R35W minus 24117440 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30924 rs7117260 OR51S1 119692 11 4826482 XM_061624 XP_061624 A/C L178R plus 10677194 885 TSC-CSHL HapMap-CEPH-30-trios 59 0.5 121 "HapMap,doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily S, member 1" 30925 rs7117511 MYO7A 4647 11 76601714 NM_000260 NP_000251 A/G D2142N plus 23647756 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 30926 rs7117511 MYO7A 4647 11 76601714 NM_000260 NP_000251 A/G D2142N plus 23647756 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 30927 rs7117511 MYO7A 4647 11 76601714 NM_000260 NP_000251 A/G D2142N plus 23647756 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q13.5 "myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))" 30928 rs7118113 OR51B4 79339 11 5279647 NM_033179 NP_149419 C/T V36I plus 10678878 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq,cluster" 11p15 "olfactory receptor, family 51, subfamily B, member 4" 30929 rs7120079 OR4D11 219986 11 59028213 XM_166903 XP_166903 C/T F197L plus 10682808 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 120 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 4, subfamily D, member 11" 30930 rs7123108 OR5R1 219479 11 55941977 XM_166831 XP_166831 C/T C103Y plus 24569016 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30931 rs7123108 OR5R1 219479 11 55941977 XM_166831 XP_166831 C/T C103Y plus 24569016 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30932 rs7123108 OR5R1 219479 11 55941977 XM_166831 XP_166831 C/T C103Y plus 24569016 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 30933 rs7124409 NUP98 4928 11 3673391 NM_016320 NP_057404 A/T L1344H plus 10691425 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 116 HapMap 11p15.5 nucleoporin 98kDa 30934 rs7128029 PSMD13 5719 11 234141 NM_175932 NP_787128 C/T A39T minus 24117442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30935 rs7128029 PSMD13 5719 11 234141 NM_175932 NP_787128 C/T A39T minus 24117442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30936 rs7128029 PSMD13 5719 11 234141 NM_175932 NP_787128 C/T A39T minus 24117442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 11p15.5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" 30937 rs7130656 SLC35C1 55343 11 45789085 NM_018389 NP_060859 A/G I240V plus 24697160 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq" 11p11.2 "solute carrier family 35, member C1" 30938 rs7130656 SLC35C1 55343 11 45789085 NM_018389 NP_060859 A/G I240V plus 24697160 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq" 11p11.2 "solute carrier family 35, member C1" 30939 rs7130656 SLC35C1 55343 11 45789085 NM_018389 NP_060859 A/G I240V plus 24697160 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 11p11.2 "solute carrier family 35, member C1" 30940 rs7131283 NYD-SP21 84689 11 59939546 XM_495876 XP_495876 A/T N177Y plus 23605058 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 11q12.2 testes development-related NYD-SP21 30941 rs7131283 NYD-SP21 84689 11 59939546 XM_495876 XP_495876 A/T N177Y plus 23605058 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 11q12.2 testes development-related NYD-SP21 30942 rs7131283 NYD-SP21 84689 11 59939546 XM_495876 XP_495876 A/T N177Y plus 23605058 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 11q12.2 testes development-related NYD-SP21 30943 rs7132600 OR6C1 390321 12 54001315 XM_372459 XP_372459 C/T T222I plus 23304485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 12q13.13 "olfactory receptor, family 6, subfamily C, member 1" 30944 rs7132600 OR6C1 390321 12 54001315 XM_372459 XP_372459 C/T T222I plus 23304485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 12q13.13 "olfactory receptor, family 6, subfamily C, member 1" 30945 rs7132600 OR6C1 390321 12 54001315 XM_372459 XP_372459 C/T T222I plus 23304485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12q13.13 "olfactory receptor, family 6, subfamily C, member 1" 30946 rs7144658 FOXA1 3169 14 37131493 NM_004496 NP_004487 C/T A83T plus 10730203 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 14q12-q13 forkhead box A1 30947 rs7146310 IPO4 79711 14 23723794 NM_024658 NP_078934 A/G A513V plus 24217272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 14q11.2 importin 4 30948 rs7146310 IPO4 79711 14 23723794 NM_024658 NP_078934 A/G A513V plus 24217272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 by freq 14q11.2 importin 4 30949 rs7146310 IPO4 79711 14 23723794 NM_024658 NP_078934 A/G A513V plus 24217272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 by freq 14q11.2 importin 4 30950 rs7148331 CKLFSF5 116173 14 22916517 NM_181618 NP_853649 G/T A73S plus 23619394 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 14q11.2 chemokine-like factor super family 5 30951 rs7148331 CKLFSF5 116173 14 22916517 NM_181618 NP_853649 G/T A73S plus 23619394 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 14q11.2 chemokine-like factor super family 5 30952 rs7148331 CKLFSF5 116173 14 22916517 NM_181618 NP_853649 G/T A73S plus 23619394 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 14q11.2 chemokine-like factor super family 5 30953 rs7149586 NFATC4 4776 14 23915681 NM_004554 NP_004545 C/T S800P plus 23799260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 14q11.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4" 30954 rs7149586 NFATC4 4776 14 23915681 NM_004554 NP_004545 C/T S800P plus 23799260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 14q11.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4" 30955 rs7149586 NFATC4 4776 14 23915681 NM_004554 NP_004545 C/T S800P plus 23799260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 14q11.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4" 30956 rs7155504 GARNL1 253959 14 35228579 XM_170749 XP_170749 C/T Y631C plus 10750378 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 116 "HapMap,freq" 14q13.2 GTPase activating RANGAP domain-like 1 30957 rs7157076 OR4K14 122740 14 19552838 XM_063308 XP_063308 C/T M432V plus 23814836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 30958 rs7157076 OR4K14 122740 14 19552838 XM_063308 XP_063308 C/T M432V plus 23814836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 30959 rs7157076 OR4K14 122740 14 19552838 XM_063308 XP_063308 C/T M432V plus 23814836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 30960 rs7161563 CDKL1 8814 14 49868876 NM_004196 NP_004187 C/G Q275E plus 16342974 693 EGP_SNPS PDR90 NIHPDR 162 0.44 123 "by doubleHit,freq,cluster" 14q22.1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 30961 rs7161563 CDKL1 8814 14 49868876 NM_004196 NP_004187 C/G Q275E plus 23640535 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 14q22.1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 30962 rs7161563 CDKL1 8814 14 49868876 NM_004196 NP_004187 C/G Q275E plus 23640535 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 14q22.1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 30963 rs7161563 CDKL1 8814 14 49868876 NM_004196 NP_004187 C/G Q275E plus 23640535 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 14q22.1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 30964 rs7162168 AKAP13 11214 15 83925950 NM_006738 NP_006729 C/T M1216T plus 23338107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30965 rs7162168 AKAP13 11214 15 83925950 NM_006738 NP_006729 C/T M1216T plus 23338107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30966 rs7162168 AKAP13 11214 15 83925950 NM_006738 NP_006729 C/T M1216T plus 23338107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30967 rs7162168 AKAP13 11214 15 83925950 NM_007200 NP_009131 C/T M1216T plus 23338107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30968 rs7162168 AKAP13 11214 15 83925950 NM_007200 NP_009131 C/T M1216T plus 23338107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30969 rs7162168 AKAP13 11214 15 83925950 NM_007200 NP_009131 C/T M1216T plus 23338107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by cluster,freq" 15q24-q25 A kinase (PRKA) anchor protein 13 30970 rs7162473 HERC1 8925 15 61724262 NM_003922 NP_003913 C/G E3722D plus 10763447 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 30971 rs7162473 HERC1 8925 15 61724262 NM_003922 NP_003913 C/G E3722D plus 23518142 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 30972 rs7162473 HERC1 8925 15 61724262 NM_003922 NP_003913 C/G E3722D plus 23518142 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 30973 rs7162473 HERC1 8925 15 61724262 NM_003922 NP_003913 C/G E3722D plus 23518142 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 30974 rs7170637 CYFIP1 23191 15 20520673 NM_014608 NP_055423 A/G G820S plus 23374935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 15q11 cytoplasmic FMR1 interacting protein 1 30975 rs7170637 CYFIP1 23191 15 20520673 NM_014608 NP_055423 A/G G820S plus 23374935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 15q11 cytoplasmic FMR1 interacting protein 1 30976 rs7170637 CYFIP1 23191 15 20520673 NM_014608 NP_055423 A/G G820S plus 23374935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 15q11 cytoplasmic FMR1 interacting protein 1 30977 rs7173448 B7H3 80381 15 71781859 NM_025240 NP_079516 C/T P97L plus 16359796 649 FHCRC POPU1 USA (20) 40 0.28 120 "by cluster,freq" 15q23-q24 B7 homolog 3 30978 rs7173476 B7H3 80381 15 71781900 NM_025240 NP_079516 A/C R111S plus 16359797 649 FHCRC POPU1 USA (20) 40 0.25 120 "by cluster,freq" 15q23-q24 B7 homolog 3 30979 rs7174710 PLA2G4B 8681 15 39914248 NM_005090 NP_005081 C/G A28G plus 23361118 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 30980 rs7174710 PLA2G4B 8681 15 39914248 NM_005090 NP_005081 C/G A28G plus 23361118 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 30981 rs7174710 PLA2G4B 8681 15 39914248 NM_005090 NP_005081 C/G A28G plus 23361118 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q11.2-q21.3 "phospholipase A2, group IVB (cytosolic)" 30982 rs7175910 ADAMTSL3 57188 15 82491107 NM_207517 NP_997400 C/T M1558T plus 10788758 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q25.2 ADAMTS-like 3 30983 rs7177092 IREB2 3658 15 76567159 NM_004136 NP_004127 C/T I580T plus 10790949 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 15q24.1 iron-responsive element binding protein 2 30984 rs7177092 IREB2 3658 15 76567159 NM_004136 NP_004127 C/T I580T plus 23439868 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 15q24.1 iron-responsive element binding protein 2 30985 rs7177092 IREB2 3658 15 76567159 NM_004136 NP_004127 C/T I580T plus 23439868 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,doubleHit,freq,cluster" 15q24.1 iron-responsive element binding protein 2 30986 rs7177092 IREB2 3658 15 76567159 NM_004136 NP_004127 C/T I580T plus 23439868 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 15q24.1 iron-responsive element binding protein 2 30987 rs7177192 AF15Q14 57082 15 38685935 NM_020380 NP_065113 C/G R43T plus 24037053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30988 rs7177192 AF15Q14 57082 15 38685935 NM_020380 NP_065113 C/G R43T plus 24037053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30989 rs7177192 AF15Q14 57082 15 38685935 NM_020380 NP_065113 C/G R43T plus 24037053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30990 rs7177192 AF15Q14 57082 15 38685935 NM_144508 NP_653091 C/G R43T plus 24037053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30991 rs7177192 AF15Q14 57082 15 38685935 NM_144508 NP_653091 C/G R43T plus 24037053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30992 rs7177192 AF15Q14 57082 15 38685935 NM_144508 NP_653091 C/G R43T plus 24037053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30993 rs7177192 AF15Q14 57082 15 38685935 NM_170589 NP_733468 C/G R43T plus 24037053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30994 rs7177192 AF15Q14 57082 15 38685935 NM_170589 NP_733468 C/G R43T plus 24037053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30995 rs7177192 AF15Q14 57082 15 38685935 NM_170589 NP_733468 C/G R43T plus 24037053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 30996 rs7182782 HERC1 8925 15 61729175 NM_003922 NP_003913 C/T G3517R plus 10801675 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 30997 rs7183491 NEIL1 79661 15 73431616 NM_024608 NP_078884 C/G I182M plus 10802985 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q23 nei endonuclease VIII-like 1 (E. coli) 30998 rs7187826 NFATC3 4775 16 66713745 NM_004555 NP_004546 C/T L153P plus 10811026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 30999 rs7187826 NFATC3 4775 16 66713745 NM_173163 NP_775186 C/T L153P plus 10811026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 31000 rs7187826 NFATC3 4775 16 66713745 NM_173164 NP_775187 C/T L153P plus 10811026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 31001 rs7187826 NFATC3 4775 16 66713745 NM_173165 NP_775188 C/T L153P plus 10811026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16q22.2 "nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3" 31002 rs7188856 NAGPA 51172 16 5015634 NM_016256 NP_057340 A/G T465I plus 24483406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.32 123 "by doubleHit,freq,cluster" 16p13.3 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 31003 rs7188856 NAGPA 51172 16 5015634 NM_016256 NP_057340 A/G T465I plus 24483406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 "by doubleHit,freq,cluster" 16p13.3 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 31004 rs7188856 NAGPA 51172 16 5015634 NM_016256 NP_057340 A/G T465I plus 24483406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.13 123 "by doubleHit,freq,cluster" 16p13.3 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase 31005 rs7190666 CP110 9738 16 19455617 NM_014711 NP_055526 A/G M375I plus 23547360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 16p13.11 CP110 protein 31006 rs7190666 CP110 9738 16 19455617 NM_014711 NP_055526 A/G M375I plus 23547360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 16p13.11 CP110 protein 31007 rs7190666 CP110 9738 16 19455617 NM_014711 NP_055526 A/G M375I plus 23547360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16p13.11 CP110 protein 31008 rs7190823 FANCA 2175 16 88393544 NM_000135 NP_000126 C/T T266A plus 14268354 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 31009 rs7190823 FANCA 2175 16 88393544 NM_000135 NP_000126 C/T T266A plus 24487952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 31010 rs7190823 FANCA 2175 16 88393544 NM_000135 NP_000126 C/T T266A plus 24487952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 31011 rs7190823 FANCA 2175 16 88393544 NM_000135 NP_000126 C/T T266A plus 24487952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 31012 rs7191351 PKD1L2 114780 16 79807455 NM_182740 NP_877417 A/T Q120L plus 23463136 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31013 rs7191351 PKD1L2 114780 16 79807455 NM_182740 NP_877417 A/T Q120L plus 23463136 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31014 rs7191351 PKD1L2 114780 16 79807455 NM_182740 NP_877417 A/T Q120L plus 23463136 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31015 rs7192948 PKD1L2 114780 16 79738598 NM_182740 NP_877417 G/T S1665Y plus 24051148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 31016 rs7192948 PKD1L2 114780 16 79738598 NM_182740 NP_877417 G/T S1665Y plus 24051148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 31017 rs7192948 PKD1L2 114780 16 79738598 NM_182740 NP_877417 G/T S1665Y plus 24051148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 31018 rs7193955 ABCC12 94160 16 46680083 NM_033226 NP_150229 A/G R1117C plus 10822374 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.18 121 "HapMap,doubleHit,freq,cluster" 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 31019 rs7194136 PKD1L2 114780 16 79738489 NM_182740 NP_877417 C/G Q1701H plus 24505552 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31020 rs7194136 PKD1L2 114780 16 79738489 NM_182740 NP_877417 C/G Q1701H plus 24505552 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31021 rs7194136 PKD1L2 114780 16 79738489 NM_182740 NP_877417 C/G Q1701H plus 24505552 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31022 rs7194871 PKD1L2 114780 16 79790065 NM_182740 NP_877417 G/T K416Q plus 24466690 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31023 rs7194871 PKD1L2 114780 16 79790065 NM_182740 NP_877417 G/T K416Q plus 24466690 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31024 rs7194871 PKD1L2 114780 16 79790065 NM_182740 NP_877417 G/T K416Q plus 24466690 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 16q23.2 polycystic kidney disease 1-like 2 31025 rs7195066 FANCA 2175 16 88363824 NM_000135 NP_000126 C/T G809D plus 14270147 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.3 121 "HapMap,doubleHit,freq,cluster" 16q24.3 "Fanconi anemia, complementation group A" 31026 rs7195142 RNF40 9810 16 30687217 NM_014771 NP_055586 A/G Q615R plus 10824589 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 16p11.2-p11.1 ring finger protein 40 31027 rs7195142 RNF40 9810 16 30687217 NM_194352 NP_919333 A/G Q615R plus 10824589 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 16p11.2-p11.1 ring finger protein 40 31028 rs7198458 RRAD 6236 16 65516387 NM_004165 NP_004156 G/T Q66P plus 10830636 1303 SEQUENOM CEPH CEPH (92) 92 0.1 119 "by doubleHit,freq,cluster" 16q22 Ras-related associated with diabetes 31029 rs7200749 VKORC1 79001 16 31010090 NM_206824 NP_996560 A/G P83L plus 23763403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 16p11.2 "vitamin K epoxide reductase complex, subunit 1" 31030 rs7200749 VKORC1 79001 16 31010090 NM_206824 NP_996560 A/G P83L plus 23763403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 16p11.2 "vitamin K epoxide reductase complex, subunit 1" 31031 rs7200749 VKORC1 79001 16 31010090 NM_206824 NP_996560 A/G P83L plus 23763403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 "by doubleHit,freq,cluster" 16p11.2 "vitamin K epoxide reductase complex, subunit 1" 31032 rs7201448 ITGAM 3684 16 31244389 NM_000632 NP_000623 C/T A858V plus 23450038 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 31033 rs7201448 ITGAM 3684 16 31244389 NM_000632 NP_000623 C/T A858V plus 23450038 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 31034 rs7201448 ITGAM 3684 16 31244389 NM_000632 NP_000623 C/T A858V plus 23450038 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 31035 rs7201481 Rab11-FIP3 9727 16 495573 NM_014700 NP_055515 G/T A482S plus 10836193 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 16p13.3 eferin 31036 rs7202455 ZNF267 10308 16 31833840 NM_003414 NP_003405 A/G M257V plus 10837987 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16p11.2 zinc finger protein 267 31037 rs7202925 CNTNAP4 85445 16 75144703 NM_033401 NP_207837 G/T D1158E plus 23545736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 16q23.1 contactin associated protein-like 4 31038 rs7202925 CNTNAP4 85445 16 75144703 NM_033401 NP_207837 G/T D1158E plus 23545736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 16q23.1 contactin associated protein-like 4 31039 rs7202925 CNTNAP4 85445 16 75144703 NM_033401 NP_207837 G/T D1158E plus 23545736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 16q23.1 contactin associated protein-like 4 31040 rs7203801 SRCAP 10847 16 30639099 NM_006662 NP_006653 C/T A781V plus 10840474 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 16p11.2 Snf2-related CBP activator protein 31041 rs7206111 PRDM7 11105 16 88652372 NM_052996 NP_443722 G/T T135K plus 10844778 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.03 123 "HapMap,doubleHit,freq,cluster" 16q24.3 PR domain containing 7 31042 rs7206111 PRDM7 11105 16 88652372 NM_052996 NP_443722 G/T T135K plus 23780461 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 16q24.3 PR domain containing 7 31043 rs7206111 PRDM7 11105 16 88652372 NM_052996 NP_443722 G/T T135K plus 23780461 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 16q24.3 PR domain containing 7 31044 rs7206111 PRDM7 11105 16 88652372 NM_052996 NP_443722 G/T T135K plus 23780461 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 16q24.3 PR domain containing 7 31045 rs7207402 ITGA2B 3674 17 39811538 NM_000419 NP_000410 A/C V649L plus 10847030 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 17q21.32 "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)" 31046 rs7207403 GALGT2 124872 17 44565505 NM_153446 NP_703147 A/C A40D plus 10847031 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 121 "HapMap,doubleHit,freq,cluster" 17q21.33 "UDP-GalNAc:Neu5Acalpha2-3Galbeta-R beta1,4-N-acetylgalactosaminyltransferase" 31047 rs7208207 COG1 9382 17 68711376 NM_018714 NP_061184 A/G Y744C plus 10848436 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 17q25.1 component of oligomeric golgi complex 1 31048 rs7208422 EVER2 147138 17 73642170 NM_152468 NP_689681 A/T N306I plus 10848800 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.49 121 "HapMap,doubleHit,freq,cluster" 17q25.3 epidermodysplasia verruciformis 2 31049 rs7208693 MPO 4353 17 53712817 NM_000250 NP_000241 A/C V53F plus 16338617 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 80 0.11 120 "by cluster,freq" 17q23.1 myeloperoxidase 31050 rs7208980 USP32 84669 17 55733808 NM_032582 NP_115971 A/G H76Y plus 10849768 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 17q23.3 ubiquitin specific protease 32 31051 rs7211875 TADA2L 6871 17 32845581 NM_001488 NP_001479 C/T P6S plus 10854991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31052 rs7211875 TADA2L 6871 17 32845581 NM_001488 NP_001479 C/T P6S plus 24108350 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31053 rs7211875 TADA2L 6871 17 32845581 NM_001488 NP_001479 C/T P6S plus 24108350 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31054 rs7211875 TADA2L 6871 17 32845581 NM_001488 NP_001479 C/T P6S plus 24108350 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31055 rs7211875 TADA2L 6871 17 32845581 NM_133439 NP_597683 C/T P6S plus 10854991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31056 rs7211875 TADA2L 6871 17 32845581 NM_133439 NP_597683 C/T P6S plus 24108350 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31057 rs7211875 TADA2L 6871 17 32845581 NM_133439 NP_597683 C/T P6S plus 24108350 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31058 rs7211875 TADA2L 6871 17 32845581 NM_133439 NP_597683 C/T P6S plus 24108350 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "HapMap,freq,cluster" 17q12-q21 "transcriptional adaptor 2 (ADA2 homolog, yeast)-like" 31059 rs7212260 TRIM25 7706 17 52346083 NM_005082 NP_005073 A/C V89G plus 10855653 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 31060 rs7212260 TRIM25 7706 17 52346083 NM_005082 NP_005073 A/C V89G plus 23577388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 31061 rs7212260 TRIM25 7706 17 52346083 NM_005082 NP_005073 A/C V89G plus 23577388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 31062 rs7212260 TRIM25 7706 17 52346083 NM_005082 NP_005073 A/C V89G plus 23577388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 17q23.1 tripartite motif-containing 25 31063 rs7212483 KRT20 54474 17 36294578 NM_019010 NP_061883 C/T S129N plus 23594533 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 17q21.2 keratin 20 31064 rs7212483 KRT20 54474 17 36294578 NM_019010 NP_061883 C/T S129N plus 23594533 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 17q21.2 keratin 20 31065 rs7212483 KRT20 54474 17 36294578 NM_019010 NP_061883 C/T S129N plus 23594533 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 17q21.2 keratin 20 31066 rs7212506 ABCA6 23460 17 64613313 NM_080284 NP_525023 C/T M875I plus 23634168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 31067 rs7212506 ABCA6 23460 17 64613313 NM_080284 NP_525023 C/T M875I plus 23634168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 31068 rs7212506 ABCA6 23460 17 64613313 NM_080284 NP_525023 C/T M875I plus 23634168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 31069 rs7213731 FBXO39 162517 17 6630888 NM_153230 NP_694962 A/G I363M plus 10858332 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.21 120 "HapMap,doubleHit,freq,cluster" 17p13.2 F-box protein 39 31070 rs7214723 CAMKK1 84254 17 3722597 NM_032294 NP_115670 C/T E375G plus 24583452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31071 rs7214723 CAMKK1 84254 17 3722597 NM_032294 NP_115670 C/T E375G plus 24583452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31072 rs7214723 CAMKK1 84254 17 3722597 NM_032294 NP_115670 C/T E375G plus 24583452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31073 rs7214723 CAMKK1 84254 17 3722597 NM_172206 NP_757343 C/T E375G plus 24583452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31074 rs7214723 CAMKK1 84254 17 3722597 NM_172206 NP_757343 C/T E375G plus 24583452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31075 rs7214723 CAMKK1 84254 17 3722597 NM_172206 NP_757343 C/T E375G plus 24583452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31076 rs7214723 CAMKK1 84254 17 3722597 NM_172207 NP_757344 C/T E413G plus 24583452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31077 rs7214723 CAMKK1 84254 17 3722597 NM_172207 NP_757344 C/T E413G plus 24583452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31078 rs7214723 CAMKK1 84254 17 3722597 NM_172207 NP_757344 C/T E413G plus 24583452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 17p13.3 "calcium/calmodulin-dependent protein kinase kinase 1, alpha" 31079 rs7215880 PEMT 10400 17 17435634 NM_148172 NP_680477 A/G V11A plus 10862219 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 31080 rs7215880 PEMT 10400 17 17435634 NM_148172 NP_680477 A/G V11A plus 23643426 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 31081 rs7215880 PEMT 10400 17 17435634 NM_148172 NP_680477 A/G V11A plus 23643426 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 31082 rs7215880 PEMT 10400 17 17435634 NM_148172 NP_680477 A/G V11A plus 23643426 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,cluster" 17p11.2 phosphatidylethanolamine N-methyltransferase 31083 rs7215958 MYO1D 4642 17 28010279 XM_050041 XP_050041 C/T R912H plus 23795156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q11-q12 myosin ID 31084 rs7215958 MYO1D 4642 17 28010279 XM_050041 XP_050041 C/T R912H plus 23795156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 17q11-q12 myosin ID 31085 rs7215958 MYO1D 4642 17 28010279 XM_050041 XP_050041 C/T R912H plus 23795156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q11-q12 myosin ID 31086 rs7216445 DDX52 11056 17 33058523 NM_007010 NP_008941 C/T M403V plus 10863259 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 121 "HapMap,doubleHit,freq,cluster" 17q21.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 31087 rs7216445 DDX52 11056 17 33058523 NM_152300 NP_689513 C/T M295V plus 10863259 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 121 "HapMap,doubleHit,freq,cluster" 17q21.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 31088 rs7218599 ASB16 92591 17 39603872 NM_080863 NP_543139 A/T Q63H plus 10867116 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 121 "HapMap,freq,cluster" 17q21.31 ankyrin repeat and SOCS box-containing 16 31089 rs7224723 ZNF287 57336 17 16397339 NM_020653 NP_065704 G/T K274T plus 10878053 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 287 31090 rs7224723 ZNF287 57336 17 16397339 NM_020653 NP_065704 G/T K274T plus 23640398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 287 31091 rs7224723 ZNF287 57336 17 16397339 NM_020653 NP_065704 G/T K274T plus 23640398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 287 31092 rs7224723 ZNF287 57336 17 16397339 NM_020653 NP_065704 G/T K274T plus 23640398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 287 31093 rs7225107 ALOX15B 247 17 7892603 NM_001141 NP_001132 A/G I676V plus 10878732 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 31094 rs7225107 ALOX15B 247 17 7892603 NM_001141 NP_001132 A/G I676V plus 23438017 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 31095 rs7225107 ALOX15B 247 17 7892603 NM_001141 NP_001132 A/G I676V plus 23438017 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 31096 rs7225107 ALOX15B 247 17 7892603 NM_001141 NP_001132 A/G I676V plus 23438017 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 17p13.1 "arachidonate 15-lipoxygenase, second type" 31097 rs7245429 FBN3 84467 19 8065362 NM_032447 NP_115823 G/T P1958H plus 24534760 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.48 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31098 rs7245429 FBN3 84467 19 8065362 NM_032447 NP_115823 G/T P1958H plus 24534760 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.23 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31099 rs7245429 FBN3 84467 19 8065362 NM_032447 NP_115823 G/T P1958H plus 24534760 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31100 rs7246232 LIPE 3991 19 47598754 NM_005357 NP_005348 G/T R938S plus 10919219 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 19q13.2 "lipase, hormone-sensitive" 31101 rs7246376 FBN3 84467 19 8109328 NM_032447 NP_115823 A/G P329L plus 24089266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 19p13 fibrillin 3 31102 rs7246376 FBN3 84467 19 8109328 NM_032447 NP_115823 A/G P329L plus 24089266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 19p13 fibrillin 3 31103 rs7246376 FBN3 84467 19 8109328 NM_032447 NP_115823 A/G P329L plus 24089266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by cluster,freq" 19p13 fibrillin 3 31104 rs7246980 OR7G1 125962 19 9086973 XM_064883 XP_064883 A/G A156V plus 23812719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 31105 rs7246980 OR7G1 125962 19 9086973 XM_064883 XP_064883 A/G A156V plus 23812719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 31106 rs7246980 OR7G1 125962 19 9086973 XM_064883 XP_064883 A/G A156V plus 23812719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 19p13.2 "olfactory receptor, family 7, subfamily G, member 1" 31107 rs7247284 RNASEH2A 10535 19 12782186 NM_006397 NP_006388 C/T L202S plus 10921045 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 116 "HapMap,doubleHit,freq" 19p13.2 "ribonuclease H2, large subunit" 31108 rs7250872 ATP8B3 148229 19 1762603 NM_138813 NP_620168 C/T G45R plus 23755358 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31109 rs7250872 ATP8B3 148229 19 1762603 NM_138813 NP_620168 C/T G45R plus 23755358 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31110 rs7250872 ATP8B3 148229 19 1762603 NM_138813 NP_620168 C/T G45R plus 23755358 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31111 rs7251081 LRG1 116844 19 4489806 NM_052972 NP_443204 C/T G64S plus 10927969 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit,cluster" 19p13.3 leucine-rich alpha-2-glycoprotein 1 31112 rs7251252 ZNF556 80032 19 2827230 NM_024967 NP_079243 A/T E90D plus 10928290 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19p13.3 zinc finger protein 556 31113 rs7252632 ZIM3 114026 19 62339048 NM_052882 NP_443114 C/T N157D plus 24719705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 31114 rs7252632 ZIM3 114026 19 62339048 NM_052882 NP_443114 C/T N157D plus 24719705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 31115 rs7252632 ZIM3 114026 19 62339048 NM_052882 NP_443114 C/T N157D plus 24719705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 31116 rs7253301 HIF3A 64344 19 51520683 NM_022462 NP_071907 C/T F407L plus 10931890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.33 "hypoxia inducible factor 3, alpha subunit" 31117 rs7253301 HIF3A 64344 19 51520683 NM_152794 NP_690007 C/T F461L plus 10931890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.33 "hypoxia inducible factor 3, alpha subunit" 31118 rs7253301 HIF3A 64344 19 51520683 NM_152795 NP_690008 C/T F463L plus 10931890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.33 "hypoxia inducible factor 3, alpha subunit" 31119 rs7253301 HIF3A 64344 19 51520683 NM_152796 NP_690009 C/T F394L plus 10931890 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.33 "hypoxia inducible factor 3, alpha subunit" 31120 rs7257170 DEDD2 162989 19 47412975 NM_133328 NP_579874 C/G A9P plus 10938811 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.31 death effector domain containing 2 31121 rs7257948 FBN3 84467 19 8044054 NM_032447 NP_115823 A/C E2610D plus 23980268 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31122 rs7257948 FBN3 84467 19 8044054 NM_032447 NP_115823 A/C E2610D plus 23980268 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31123 rs7257948 FBN3 84467 19 8044054 NM_032447 NP_115823 A/C E2610D plus 23980268 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 19p13 fibrillin 3 31124 rs7258368 ZNF625 90589 19 12117912 NM_145233 NP_660276 C/T V41M plus 10940970 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 116 "HapMap,freq" 19p13.2 zinc finger protein 625 31125 rs7273698 TNFRSF5 958 20 44190230 NM_152854 NP_690593 C/T R182W plus 16340751 693 EGP_SNPS PDR90 NIHPDR 176 0.01 120 "by cluster,freq" 20q12-q13.2 "tumor necrosis factor receptor superfamily, member 5" 31126 rs7277175 PCNT2 5116 21 46666369 NM_006031 NP_006022 A/G Q2361R plus 10978373 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.09 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 31127 rs7277175 PCNT2 5116 21 46666369 NM_006031 NP_006022 A/G Q2361R plus 23558538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 31128 rs7277175 PCNT2 5116 21 46666369 NM_006031 NP_006022 A/G Q2361R plus 23558538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 31129 rs7277175 PCNT2 5116 21 46666369 NM_006031 NP_006022 A/G Q2361R plus 23558538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 21q22.3 pericentrin 2 (kendrin) 31130 rs7279064 IFNAR2 3455 21 33536125 NM_000874 NP_000865 G/T F10V plus 28459200 549 KYUGEN CP CEPH (78) 156 0.37 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31131 rs7279064 IFNAR2 3455 21 33536125 NM_000874 NP_000865 G/T F10V plus 28459200 1335 KYUGEN JPK2 Japanese (100) 200 0.46 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31132 rs7279064 IFNAR2 3455 21 33536125 NM_207584 NP_997467 G/T F10V plus 28459200 549 KYUGEN CP CEPH (78) 156 0.37 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31133 rs7279064 IFNAR2 3455 21 33536125 NM_207584 NP_997467 G/T F10V plus 28459200 1335 KYUGEN JPK2 Japanese (100) 200 0.46 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31134 rs7279064 IFNAR2 3455 21 33536125 NM_207585 NP_997468 G/T F10V plus 28459200 549 KYUGEN CP CEPH (78) 156 0.37 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31135 rs7279064 IFNAR2 3455 21 33536125 NM_207585 NP_997468 G/T F10V plus 28459200 1335 KYUGEN JPK2 Japanese (100) 200 0.46 123 "by doubleHit,freq,cluster" 21q22.11 "interferon (alpha, beta and omega) receptor 2" 31136 rs7285167 APOL2 23780 22 34948420 NM_030882 NP_112092 A/G R182C plus 23644531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31137 rs7285167 APOL2 23780 22 34948420 NM_030882 NP_112092 A/G R182C plus 23644531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31138 rs7285167 APOL2 23780 22 34948420 NM_030882 NP_112092 A/G R182C plus 23644531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31139 rs7285167 APOL2 23780 22 34948420 NM_145637 NP_663612 A/G R182C plus 23644531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31140 rs7285167 APOL2 23780 22 34948420 NM_145637 NP_663612 A/G R182C plus 23644531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31141 rs7285167 APOL2 23780 22 34948420 NM_145637 NP_663612 A/G R182C plus 23644531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q12 "apolipoprotein L, 2" 31142 rs7288201 GGTLA1 2687 22 22945847 NM_004121 NP_004112 C/T I475V plus 11002305 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 31143 rs7288201 GGTLA1 2687 22 22945847 NM_004121 NP_004112 C/T I475V plus 23610262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 31144 rs7288201 GGTLA1 2687 22 22945847 NM_004121 NP_004112 C/T I475V plus 23610262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 31145 rs7288201 GGTLA1 2687 22 22945847 NM_004121 NP_004112 C/T I475V plus 23610262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 22q11.23 gamma-glutamyltransferase-like activity 1 31146 rs7290488 C1QTNF6 114904 22 35905883 NM_031910 NP_114116 C/T G55D plus 24601541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31147 rs7290488 C1QTNF6 114904 22 35905883 NM_031910 NP_114116 C/T G55D plus 24601541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31148 rs7290488 C1QTNF6 114904 22 35905883 NM_031910 NP_114116 C/T G55D plus 24601541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31149 rs7290488 C1QTNF6 114904 22 35905883 NM_182486 NP_872292 C/T G55D plus 24601541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31150 rs7290488 C1QTNF6 114904 22 35905883 NM_182486 NP_872292 C/T G55D plus 24601541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31151 rs7290488 C1QTNF6 114904 22 35905883 NM_182486 NP_872292 C/T G55D plus 24601541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q13.1 C1q and tumor necrosis factor related protein 6 31152 rs7302230 CLSTN3 9746 12 7179699 NM_014718 NP_055533 A/G S209G plus 24697852 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12p13.31 calsyntenin 3 31153 rs7302230 CLSTN3 9746 12 7179699 NM_014718 NP_055533 A/G S209G plus 24697852 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12p13.31 calsyntenin 3 31154 rs7302230 CLSTN3 9746 12 7179699 NM_014718 NP_055533 A/G S209G plus 24697852 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.31 calsyntenin 3 31155 rs7302981 LASS5 91012 12 48824082 NM_147190 NP_671723 A/G C75R plus 24419989 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 12q13.12 LAG1 longevity assurance homolog 5 (S. cerevisiae) 31156 rs7302981 LASS5 91012 12 48824082 NM_147190 NP_671723 A/G C75R plus 24419989 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 12q13.12 LAG1 longevity assurance homolog 5 (S. cerevisiae) 31157 rs7302981 LASS5 91012 12 48824082 NM_147190 NP_671723 A/G C75R plus 24419989 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q13.12 LAG1 longevity assurance homolog 5 (S. cerevisiae) 31158 rs7306642 STAB2 55576 12 102641501 NM_017564 NP_060034 A/C P2039T plus 23458327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q23.3 stabilin 2 31159 rs7306642 STAB2 55576 12 102641501 NM_017564 NP_060034 A/C P2039T plus 23458327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12q23.3 stabilin 2 31160 rs7306642 STAB2 55576 12 102641501 NM_017564 NP_060034 A/C P2039T plus 23458327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12q23.3 stabilin 2 31161 rs7310138 K6IRS2 140807 12 51267894 NM_080747 NP_542785 A/T D366E plus 24387528 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq" 12q13.13 keratin protein K6irs 31162 rs7310138 K6IRS2 140807 12 51267894 NM_080747 NP_542785 A/T D366E plus 24387528 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq" 12q13.13 keratin protein K6irs 31163 rs7310138 K6IRS2 140807 12 51267894 NM_080747 NP_542785 A/T D366E plus 24387528 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 12q13.13 keratin protein K6irs 31164 rs7311358 SLCO1B3 28234 12 20907027 NM_019844 NP_062818 A/G M233I plus 23348529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 31165 rs7311358 SLCO1B3 28234 12 20907027 NM_019844 NP_062818 A/G M233I plus 23348529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 31166 rs7311358 SLCO1B3 28234 12 20907027 NM_019844 NP_062818 A/G M233I plus 23348529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.16 123 "by doubleHit,freq,cluster" 12p12 "solute carrier organic anion transporter family, member 1B3" 31167 rs7312857 BIN2 51411 12 49993893 NM_016293 NP_057377 C/T S48N plus 11048789 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq" 12q13 bridging integrator 2 31168 rs7312857 BIN2 51411 12 49993893 NM_016293 NP_057377 C/T S48N plus 24423322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "HapMap,doubleHit,freq" 12q13 bridging integrator 2 31169 rs7312857 BIN2 51411 12 49993893 NM_016293 NP_057377 C/T S48N plus 24423322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq" 12q13 bridging integrator 2 31170 rs7312857 BIN2 51411 12 49993893 NM_016293 NP_057377 C/T S48N plus 24423322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,doubleHit,freq" 12q13 bridging integrator 2 31171 rs7313020 BCAT1 586 12 24877007 NM_005504 NP_005495 C/T E321K plus 11049057 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 123 "HapMap,doubleHit,freq" 12pter-q12 "branched chain aminotransferase 1, cytosolic" 31172 rs7313020 BCAT1 586 12 24877007 NM_005504 NP_005495 C/T E321K plus 24433944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq" 12pter-q12 "branched chain aminotransferase 1, cytosolic" 31173 rs7313020 BCAT1 586 12 24877007 NM_005504 NP_005495 C/T E321K plus 24433944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq" 12pter-q12 "branched chain aminotransferase 1, cytosolic" 31174 rs7313020 BCAT1 586 12 24877007 NM_005504 NP_005495 C/T E321K plus 24433944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq" 12pter-q12 "branched chain aminotransferase 1, cytosolic" 31175 rs7315731 SFRS2IP 9169 12 44607781 NM_004719 NP_004710 A/T F342Y plus 16360782 649 FHCRC POPU1 USA (20) 40 0.28 121 "by doubleHit,freq,cluster" 12q13.11 "splicing factor, arginine/serine-rich 2, interacting protein" 31176 rs7315731 SFRS2IP 9169 12 44607781 NM_004719 NP_004710 A/T F342Y plus 16360783 649 FHCRC POPU1 USA (20) 40 0.15 121 "by doubleHit,freq,cluster" 12q13.11 "splicing factor, arginine/serine-rich 2, interacting protein" 31177 rs7317245 NURIT 220082 13 45186146 NM_152719 NP_689932 A/G K329E plus 23408743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by cluster,freq" 13q14.11 testis-specific leucine zipper protein nurit 31178 rs7317245 NURIT 220082 13 45186146 NM_152719 NP_689932 A/G K329E plus 23408743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by cluster,freq" 13q14.11 testis-specific leucine zipper protein nurit 31179 rs7317245 NURIT 220082 13 45186146 NM_152719 NP_689932 A/G K329E plus 23408743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 13q14.11 testis-specific leucine zipper protein nurit 31180 rs7324275 C13orf19 55578 13 36512766 NM_017569 NP_060039 C/T M155V plus 11070669 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,cluster" 13q13.2 transcription factor (p38 interacting protein) 31181 rs7324275 C13orf19 55578 13 36512766 NM_017569 NP_060039 C/T M155V plus 23391218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,cluster" 13q13.2 transcription factor (p38 interacting protein) 31182 rs7324275 C13orf19 55578 13 36512766 NM_017569 NP_060039 C/T M155V plus 23391218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,cluster" 13q13.2 transcription factor (p38 interacting protein) 31183 rs7324275 C13orf19 55578 13 36512766 NM_017569 NP_060039 C/T M155V plus 23391218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,cluster" 13q13.2 transcription factor (p38 interacting protein) 31184 rs7330220 LECT1 11061 13 52184951 NM_007015 NP_008946 C/T V175I plus 23327697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 13q14-q21 leukocyte cell derived chemotaxin 1 31185 rs7330220 LECT1 11061 13 52184951 NM_007015 NP_008946 C/T V175I plus 23327697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by doubleHit,freq,cluster" 13q14-q21 leukocyte cell derived chemotaxin 1 31186 rs7330220 LECT1 11061 13 52184951 NM_007015 NP_008946 C/T V175I plus 23327697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q14-q21 leukocyte cell derived chemotaxin 1 31187 rs7336216 CENPJ 55835 13 24384977 NM_018451 NP_060921 C/G D63H plus 23438867 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 13q12.13 centromere protein J 31188 rs7336216 CENPJ 55835 13 24384977 NM_018451 NP_060921 C/G D63H plus 23438867 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 13q12.13 centromere protein J 31189 rs7336216 CENPJ 55835 13 24384977 NM_018451 NP_060921 C/G D63H plus 23438867 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q12.13 centromere protein J 31190 rs7339904 HHL 9910 1 170951381 NM_014857 NP_055672 A/G S277G plus 11100155 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 1q24 "expressed in hematopoietic cells, heart, liver" 31191 rs7358374 DNCH2 79659 11 102511679 XM_370652 XP_370652 A/G R789K plus 11123547 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 31192 rs7373165 LMLN 89782 3 199190223 NM_033029 NP_149018 G/T E106D plus 23707271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 3q29 leishmanolysin-like (metallopeptidase M8 family) 31193 rs7373165 LMLN 89782 3 199190223 NM_033029 NP_149018 G/T E106D plus 23707271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 3q29 leishmanolysin-like (metallopeptidase M8 family) 31194 rs7373165 LMLN 89782 3 199190223 NM_033029 NP_149018 G/T E106D plus 23707271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3q29 leishmanolysin-like (metallopeptidase M8 family) 31195 rs7386782 OC90 137202 8 133122491 XM_070277 XP_070277 C/T S153G plus 11161604 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.29 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31196 rs7386782 OC90 137202 8 133122491 XM_070277 XP_070277 C/T S153G plus 24473211 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31197 rs7386782 OC90 137202 8 133122491 XM_070277 XP_070277 C/T S153G plus 24473211 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31198 rs7386782 OC90 137202 8 133122491 XM_070277 XP_070277 C/T S153G plus 24473211 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31199 rs7386783 OC90 137202 8 133122500 XM_070277 XP_070277 C/T N150D plus 11161605 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31200 rs7386783 OC90 137202 8 133122500 XM_070277 XP_070277 C/T N150D plus 24473218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31201 rs7386783 OC90 137202 8 133122500 XM_070277 XP_070277 C/T N150D plus 24473218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31202 rs7386783 OC90 137202 8 133122500 XM_070277 XP_070277 C/T N150D plus 24473218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8q24.22 otoconin 90 31203 rs7396938 OR52N4 390072 11 5733199 XM_372361 XP_372361 A/T N218I plus 23809902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 4" 31204 rs7396938 OR52N4 390072 11 5733199 XM_372361 XP_372361 A/T N218I plus 23809902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 4" 31205 rs7396938 OR52N4 390072 11 5733199 XM_372361 XP_372361 A/T N218I plus 23809902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 4" 31206 rs7406910 HOXB7 3217 17 44043255 NM_004502 NP_004493 C/T T9A plus 11190642 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,doubleHit,freq,cluster" 17q21.3 homeo box B7 31207 rs7410919 LAMC1 3915 1 179826204 NM_002293 NP_002284 C/T L888P plus 23853076 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31208 rs7410919 LAMC1 3915 1 179826204 NM_002293 NP_002284 C/T L888P plus 23853076 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31209 rs7410919 LAMC1 3915 1 179826204 NM_002293 NP_002284 C/T L888P plus 23853076 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31210 rs7416842 OSBPL9 114883 1 51829718 NM_024586 NP_078862 C/G G49A plus 11205207 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 1p32.3 oxysterol binding protein-like 9 31211 rs7416842 OSBPL9 114883 1 51829718 NM_148908 NP_683706 C/G G49A plus 11205207 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 1p32.3 oxysterol binding protein-like 9 31212 rs7416842 OSBPL9 114883 1 51829718 NM_148909 NP_683707 C/G G49A plus 11205207 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 1p32.3 oxysterol binding protein-like 9 31213 rs7422339 CPS1 1373 2 211366013 NM_001875 NP_001866 A/C T1406N plus 11212944 1303 SEQUENOM CEPH CEPH (92) 92 0.22 123 "by doubleHit,freq,cluster" 2q35 "carbamoyl-phosphate synthetase 1, mitochondrial" 31214 rs7426114 NEB 4703 2 152353080 NM_004543 NP_004534 C/T V1491M plus 23882857 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 2q22 nebulin 31215 rs7426114 NEB 4703 2 152353080 NM_004543 NP_004534 C/T V1491M plus 23882857 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by doubleHit,freq,cluster" 2q22 nebulin 31216 rs7426114 NEB 4703 2 152353080 NM_004543 NP_004534 C/T V1491M plus 23882857 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 2q22 nebulin 31217 rs7433088 DPPA4 55211 3 110532063 NM_018189 NP_060659 A/G S216F plus 11228147 1303 SEQUENOM CEPH CEPH (92) 92 0.03 116 by freq 3q13.13 developmental pluripotency associated 4 31218 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 14917895 901 AFFY AfAm 12 0.17 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31219 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 14917895 902 AFFY Caucasian 24 1 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31220 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 14917895 903 AFFY Asian 12 1 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31221 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 14917895 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31222 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 14917895 905 AFFY PDpanel 48 0.06 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31223 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 23234796 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31224 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 23234796 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31225 rs7435825 SPP1 6696 4 89260953 NM_000582 NP_000573 A/G S210N plus 23234796 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q21-q25 "secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)" 31226 rs7439366 UGT2B7 7364 4 70145098 NM_001074 NP_001065 C/T Y268H plus 16339390 1127 PHARMGKB_PAAR-UCHI PA128522469 188 0.45 120 "by doubleHit,freq,cluster" 4q13 "UDP glycosyltransferase 2 family, polypeptide B7" 31227 rs7439869 SMARCAD1 56916 4 95530957 NM_020159 NP_064544 C/T V301A plus 23915574 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 4q22-q23 "SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1" 31228 rs7439869 SMARCAD1 56916 4 95530957 NM_020159 NP_064544 C/T V301A plus 23915574 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "by doubleHit,freq,cluster" 4q22-q23 "SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1" 31229 rs7439869 SMARCAD1 56916 4 95530957 NM_020159 NP_064544 C/T V301A plus 23915574 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.45 123 "by doubleHit,freq,cluster" 4q22-q23 "SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1" 31230 rs7447815 SLC6A18 348932 5 1293757 NM_182632 NP_872438 C/G Y319X plus 11249106 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.4 121 "HapMap,doubleHit,freq,cluster" 5p15.33 "solute carrier family 6 (neurotransmitter transporter), member 18" 31231 rs7481521 MUC6 4588 11 1017811 XM_290540 XP_290540 A/G V638M minus 11297119 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.42 116 "HapMap,doubleHit,freq" 11p15.5-p15.4 "mucin 6, gastric" 31232 rs7483122 OR51B6 390058 11 5329582 XM_372353 XP_372353 C/T I90T plus 23809879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 31233 rs7483122 OR51B6 390058 11 5329582 XM_372353 XP_372353 C/T I90T plus 23809879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 31234 rs7483122 OR51B6 390058 11 5329582 XM_372353 XP_372353 C/T I90T plus 23809879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily B, member 6" 31235 rs7491932 SLITRK1 114798 13 83351990 NM_052910 NP_443142 G/T L552M plus 11311906 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 13q31.1 "SLIT and NTRK-like family, member 1" 31236 rs7497617 IREB2 3658 15 76573422 NM_004136 NP_004127 C/T P814L plus 11319895 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q24.1 iron-responsive element binding protein 2 31237 rs7503034 SGSH 6448 17 75798988 NM_000199 NP_000190 C/T R456H plus 24073464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 17q25.3 N-sulfoglucosamine sulfohydrolase (sulfamidase) 31238 rs7503034 SGSH 6448 17 75798988 NM_000199 NP_000190 C/T R456H plus 24073464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq,cluster" 17q25.3 N-sulfoglucosamine sulfohydrolase (sulfamidase) 31239 rs7503034 SGSH 6448 17 75798988 NM_000199 NP_000190 C/T R456H plus 24073464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 17q25.3 N-sulfoglucosamine sulfohydrolase (sulfamidase) 31240 rs7508949 CRNKL1 51340 20 19981367 NM_016652 NP_057736 C/G G35R plus 24535149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 31241 rs7508949 CRNKL1 51340 20 19981367 NM_016652 NP_057736 C/G G35R plus 24535149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 31242 rs7508949 CRNKL1 51340 20 19981367 NM_016652 NP_057736 C/G G35R plus 24535149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 20p11.2 "Crn, crooked neck-like 1 (Drosophila)" 31243 rs7512553 FLG 2312 1 149094080 XM_048104 XP_048104 A/G Y2119H plus 11342360 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 116 "HapMap,doubleHit" 1q21 filaggrin 31244 rs7514102 PROK1 84432 1 110710896 NM_032414 NP_115790 A/G V67I plus 24279824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 by freq 1p21 prokineticin 1 31245 rs7514102 PROK1 84432 1 110710896 NM_032414 NP_115790 A/G V67I plus 24279824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 1p21 prokineticin 1 31246 rs7514102 PROK1 84432 1 110710896 NM_032414 NP_115790 A/G V67I plus 24279824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 1p21 prokineticin 1 31247 rs7516919 SIPA1L2 57568 1 228871032 NM_020808 NP_065859 A/T M1200L plus 24307620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 1q42.2 signal-induced proliferation-associated 1 like 2 31248 rs7516919 SIPA1L2 57568 1 228871032 NM_020808 NP_065859 A/T M1200L plus 24307620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q42.2 signal-induced proliferation-associated 1 like 2 31249 rs7516919 SIPA1L2 57568 1 228871032 NM_020808 NP_065859 A/T M1200L plus 24307620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42.2 signal-induced proliferation-associated 1 like 2 31250 rs7522061 FCRH3 115352 1 154481463 NM_052939 NP_443171 C/T N28D plus 23878009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "by doubleHit,freq,cluster" 1q21-q22 Fc receptor-like protein 3 31251 rs7522061 FCRH3 115352 1 154481463 NM_052939 NP_443171 C/T N28D plus 23878009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 1q21-q22 Fc receptor-like protein 3 31252 rs7522061 FCRH3 115352 1 154481463 NM_052939 NP_443171 C/T N28D plus 23878009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 1q21-q22 Fc receptor-like protein 3 31253 rs7524261 CHS1 1130 1 232299585 NM_000081 NP_000072 A/C L192V plus 23232487 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1q42.1-q42.2 Chediak-Higashi syndrome 1 31254 rs7524261 CHS1 1130 1 232299585 NM_000081 NP_000072 A/C L192V plus 23232487 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 1q42.1-q42.2 Chediak-Higashi syndrome 1 31255 rs7524261 CHS1 1130 1 232299585 NM_000081 NP_000072 A/C L192V plus 23232487 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q42.1-q42.2 Chediak-Higashi syndrome 1 31256 rs7527017 ROR1 4919 1 64355298 NM_005012 NP_005003 C/T T518M plus 24629260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 1p32-p31 receptor tyrosine kinase-like orphan receptor 1 31257 rs7527017 ROR1 4919 1 64355298 NM_005012 NP_005003 C/T T518M plus 24629260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p32-p31 receptor tyrosine kinase-like orphan receptor 1 31258 rs7527017 ROR1 4919 1 64355298 NM_005012 NP_005003 C/T T518M plus 24629260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 1p32-p31 receptor tyrosine kinase-like orphan receptor 1 31259 rs7528153 VAV3 10451 1 108019769 NM_006113 NP_006104 A/T T298S plus 23179921 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 1p13.3 vav 3 oncogene 31260 rs7528153 VAV3 10451 1 108019769 NM_006113 NP_006104 A/T T298S plus 23179921 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 1p13.3 vav 3 oncogene 31261 rs7528153 VAV3 10451 1 108019769 NM_006113 NP_006104 A/T T298S plus 23179921 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 1p13.3 vav 3 oncogene 31262 rs7528405 ELA3B 23436 1 22052844 NM_007352 NP_031378 C/T R79W plus 23846218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 1p36.12 "elastase 3B, pancreatic" 31263 rs7528405 ELA3B 23436 1 22052844 NM_007352 NP_031378 C/T R79W plus 23846218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 1p36.12 "elastase 3B, pancreatic" 31264 rs7528405 ELA3B 23436 1 22052844 NM_007352 NP_031378 C/T R79W plus 23846218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 1p36.12 "elastase 3B, pancreatic" 31265 rs7530511 IL23R 149233 1 67397408 NM_144701 NP_653302 C/T L310P plus 15355771 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.23 121 "by doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 31266 rs7530511 IL23R 149233 1 67397408 NM_144701 NP_653302 C/T L310P plus 15355771 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.18 121 "by doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 31267 rs7530511 IL23R 149233 1 67397408 NM_144701 NP_653302 C/T L310P plus 15355771 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 121 "by doubleHit,freq,cluster" 1p31.3-p31.2 interleukin-23 receptor 31268 rs7531012 LEMD1 93273 1 202121249 XM_371338 XP_371338 A/G P25S plus 23701866 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q32.1 LEM domain containing 1 31269 rs7531012 LEMD1 93273 1 202121249 XM_371338 XP_371338 A/G P25S plus 23701866 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1q32.1 LEM domain containing 1 31270 rs7531012 LEMD1 93273 1 202121249 XM_371338 XP_371338 A/G P25S plus 23701866 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 1q32.1 LEM domain containing 1 31271 rs7535533 RGSL1 353299 1 179228486 NM_181572 NP_853550 A/G I107V plus 23856127 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling like 1 31272 rs7535533 RGSL1 353299 1 179228486 NM_181572 NP_853550 A/G I107V plus 23856127 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling like 1 31273 rs7535533 RGSL1 353299 1 179228486 NM_181572 NP_853550 A/G I107V plus 23856127 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 1q25 regulator of G-protein signalling like 1 31274 rs7536086 AGL 178 1 100073946 NM_000028 NP_000019 A/G G1115R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31275 rs7536086 AGL 178 1 100073946 NM_000028 NP_000019 A/G G1115R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31276 rs7536086 AGL 178 1 100073946 NM_000028 NP_000019 A/G G1115R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31277 rs7536086 AGL 178 1 100073946 NM_000028 NP_000019 A/G G1115R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31278 rs7536086 AGL 178 1 100073946 NM_000642 NP_000633 A/G G1115R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31279 rs7536086 AGL 178 1 100073946 NM_000642 NP_000633 A/G G1115R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31280 rs7536086 AGL 178 1 100073946 NM_000642 NP_000633 A/G G1115R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31281 rs7536086 AGL 178 1 100073946 NM_000642 NP_000633 A/G G1115R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31282 rs7536086 AGL 178 1 100073946 NM_000643 NP_000634 A/G G1115R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31283 rs7536086 AGL 178 1 100073946 NM_000643 NP_000634 A/G G1115R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31284 rs7536086 AGL 178 1 100073946 NM_000643 NP_000634 A/G G1115R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31285 rs7536086 AGL 178 1 100073946 NM_000643 NP_000634 A/G G1115R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31286 rs7536086 AGL 178 1 100073946 NM_000644 NP_000635 A/G G1115R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31287 rs7536086 AGL 178 1 100073946 NM_000644 NP_000635 A/G G1115R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31288 rs7536086 AGL 178 1 100073946 NM_000644 NP_000635 A/G G1115R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31289 rs7536086 AGL 178 1 100073946 NM_000644 NP_000635 A/G G1115R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31290 rs7536086 AGL 178 1 100073946 NM_000645 NP_000636 A/G G1098R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31291 rs7536086 AGL 178 1 100073946 NM_000645 NP_000636 A/G G1098R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31292 rs7536086 AGL 178 1 100073946 NM_000645 NP_000636 A/G G1098R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31293 rs7536086 AGL 178 1 100073946 NM_000645 NP_000636 A/G G1098R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31294 rs7536086 AGL 178 1 100073946 NM_000646 NP_000637 A/G G1099R plus 11390346 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31295 rs7536086 AGL 178 1 100073946 NM_000646 NP_000637 A/G G1099R plus 23843597 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31296 rs7536086 AGL 178 1 100073946 NM_000646 NP_000637 A/G G1099R plus 23843597 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31297 rs7536086 AGL 178 1 100073946 NM_000646 NP_000637 A/G G1099R plus 23843597 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 31298 rs7536561 LHX4 89884 1 176975181 NM_033343 NP_203129 A/G N328S plus 11391290 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.48 123 "HapMap,doubleHit,freq,cluster" 1q25.1 LIM homeobox 4 31299 rs7536561 LHX4 89884 1 176975181 NM_033343 NP_203129 A/G N328S plus 24631758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 1q25.1 LIM homeobox 4 31300 rs7536561 LHX4 89884 1 176975181 NM_033343 NP_203129 A/G N328S plus 24631758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 1q25.1 LIM homeobox 4 31301 rs7536561 LHX4 89884 1 176975181 NM_033343 NP_203129 A/G N328S plus 24631758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 1q25.1 LIM homeobox 4 31302 rs7537203 CLSPN 63967 1 35895041 NM_022111 NP_071394 C/T N525S plus 11392680 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 119 "HapMap,doubleHit,freq,cluster" 1p34.2 claspin homolog (Xenopus laevis) 31303 rs7537937 GBP2 2634 1 89294711 NM_004120 NP_004111 C/G P285A plus 24250935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 1p22.2 "guanylate binding protein 2, interferon-inducible" 31304 rs7537937 GBP2 2634 1 89294711 NM_004120 NP_004111 C/G P285A plus 24250935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 1p22.2 "guanylate binding protein 2, interferon-inducible" 31305 rs7537937 GBP2 2634 1 89294711 NM_004120 NP_004111 C/G P285A plus 24250935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 1p22.2 "guanylate binding protein 2, interferon-inducible" 31306 rs7542760 PIGR 5284 1 203496201 NM_002644 NP_002635 A/G T555I plus 23703964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 1q31-q41 polymeric immunoglobulin receptor 31307 rs7542760 PIGR 5284 1 203496201 NM_002644 NP_002635 A/G T555I plus 23703964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 1q31-q41 polymeric immunoglobulin receptor 31308 rs7542760 PIGR 5284 1 203496201 NM_002644 NP_002635 A/G T555I plus 23703964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1q31-q41 polymeric immunoglobulin receptor 31309 rs7549483 VANGL2 57216 1 157207050 XM_049695 XP_049695 C/G Q403H plus 11417539 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 116 HapMap 1q22-q23 "vang-like 2 (van gogh, Drosophila)" 31310 rs7550295 CLSTN1 22883 1 9738959 NM_014944 NP_055759 C/T A322T plus 11419289 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 116 "HapMap,doubleHit,freq" 1p36.22 calsyntenin 1 31311 rs7554507 xp33 388699 1 149440996 XM_371314 XP_371314 A/C L7I plus 11427905 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 1q22 skin-specific protein 31312 rs7556132 LAMC1 3915 1 179817412 NM_002293 NP_002284 A/G I458V plus 11431206 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31313 rs7556132 LAMC1 3915 1 179817412 NM_002293 NP_002284 A/G I458V plus 23852981 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31314 rs7556132 LAMC1 3915 1 179817412 NM_002293 NP_002284 A/G I458V plus 23852981 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31315 rs7556132 LAMC1 3915 1 179817412 NM_002293 NP_002284 A/G I458V plus 23852981 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 1q31 "laminin, gamma 1 (formerly LAMB2)" 31316 rs7558074 EIF5B 9669 2 99451340 NM_015904 NP_056988 A/C K522T plus 11434921 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 119 "HapMap,doubleHit,freq,cluster" 2p11.1-q11.1 eukaryotic translation initiation factor 5B 31317 rs7565062 SCN7A 6332 2 167159592 NM_002976 NP_002967 G/T T41N plus 11447625 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 123 "HapMap,doubleHit,freq,cluster" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 31318 rs7565893 CD8B1 926 2 86990216 NM_172100 NP_742098 G/T P168Q plus 11449148 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.26 121 "HapMap,freq,cluster" 2p12 "CD8 antigen, beta polypeptide 1 (p37)" 31319 rs7567833 COLEC11 78989 2 3184917 NM_024027 NP_076932 A/G H219R plus 11452702 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31320 rs7567833 COLEC11 78989 2 3184917 NM_024027 NP_076932 A/G H219R plus 23172256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31321 rs7567833 COLEC11 78989 2 3184917 NM_024027 NP_076932 A/G H219R plus 23172256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31322 rs7567833 COLEC11 78989 2 3184917 NM_024027 NP_076932 A/G H219R plus 23172256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31323 rs7567833 COLEC11 78989 2 3184917 NM_199235 NP_954705 A/G H216R plus 11452702 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31324 rs7567833 COLEC11 78989 2 3184917 NM_199235 NP_954705 A/G H216R plus 23172256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31325 rs7567833 COLEC11 78989 2 3184917 NM_199235 NP_954705 A/G H216R plus 23172256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31326 rs7567833 COLEC11 78989 2 3184917 NM_199235 NP_954705 A/G H216R plus 23172256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 2p25.3 collectin sub-family member 11 31327 rs7570797 GPR73 10887 2 68784722 NM_138964 NP_620414 A/G S40G plus 11458097 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 116 "HapMap,doubleHit,freq" 2p13.1 G protein-coupled receptor 73 31328 rs7572946 LRP1B 53353 2 141083978 NM_018557 NP_061027 A/T L3017F plus 11462064 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 31329 rs7578199 HDLBP 3069 2 241912838 NM_005336 NP_005327 C/T N418S plus 11471664 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "by doubleHit,freq,cluster" 2q37 high density lipoprotein binding protein (vigilin) 31330 rs7578199 HDLBP 3069 2 241912838 NM_203346 NP_976221 C/T N418S plus 11471664 1303 SEQUENOM CEPH CEPH (92) 92 0.2 120 "by doubleHit,freq,cluster" 2q37 high density lipoprotein binding protein (vigilin) 31331 rs7578597 THADA 63892 2 43644474 NM_022065 NP_071348 C/T T1187A plus 23699764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31332 rs7578597 THADA 63892 2 43644474 NM_022065 NP_071348 C/T T1187A plus 23699764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31333 rs7578597 THADA 63892 2 43644474 NM_022065 NP_071348 C/T T1187A plus 23699764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31334 rs7578597 THADA 63892 2 43644474 NM_198554 NP_940956 C/T T897A plus 23699764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31335 rs7578597 THADA 63892 2 43644474 NM_198554 NP_940956 C/T T897A plus 23699764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31336 rs7578597 THADA 63892 2 43644474 NM_198554 NP_940956 C/T T897A plus 23699764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p22.1 thyroid adenoma associated 31337 rs7588635 MERTK 10461 2 112439085 NM_006343 NP_006334 A/G A282T plus 23248650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 31338 rs7588635 MERTK 10461 2 112439085 NM_006343 NP_006334 A/G A282T plus 23248650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 31339 rs7588635 MERTK 10461 2 112439085 NM_006343 NP_006334 A/G A282T plus 23248650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 2q14.1 c-mer proto-oncogene tyrosine kinase 31340 rs7593622 ZAK 51776 2 173956320 NM_016653 NP_057737 C/T R580W plus 11500053 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,cluster" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 31341 rs7593622 ZAK 51776 2 173956320 NM_016653 NP_057737 C/T R580W plus 23224485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,cluster" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 31342 rs7593622 ZAK 51776 2 173956320 NM_016653 NP_057737 C/T R580W plus 23224485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,cluster" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 31343 rs7593622 ZAK 51776 2 173956320 NM_016653 NP_057737 C/T R580W plus 23224485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,cluster" 2q24.2 sterile alpha motif and leucine zipper containing kinase AZK 31344 rs7594497 PNPT1 87178 2 55784189 NM_033109 NP_149100 C/T N590D plus 23239344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 2p15 polyribonucleotide nucleotidyltransferase 1 31345 rs7594497 PNPT1 87178 2 55784189 NM_033109 NP_149100 C/T N590D plus 23239344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 2p15 polyribonucleotide nucleotidyltransferase 1 31346 rs7594497 PNPT1 87178 2 55784189 NM_033109 NP_149100 C/T N590D plus 23239344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 2p15 polyribonucleotide nucleotidyltransferase 1 31347 rs7598922 DHX57 90957 2 38993995 NM_198963 NP_945314 C/T N587S plus 24650482 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 "by doubleHit,freq" 2p22.3 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 31348 rs7598922 DHX57 90957 2 38993995 NM_198963 NP_945314 C/T N587S plus 24650482 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.33 123 "by doubleHit,freq" 2p22.3 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 31349 rs7598922 DHX57 90957 2 38993995 NM_198963 NP_945314 C/T N587S plus 24650482 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.14 123 "by doubleHit,freq" 2p22.3 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 31350 rs7603997 ITSN2 50618 2 24436609 NM_006277 NP_006268 C/T V290I plus 11519079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31351 rs7603997 ITSN2 50618 2 24436609 NM_006277 NP_006268 C/T V290I plus 23237135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31352 rs7603997 ITSN2 50618 2 24436609 NM_006277 NP_006268 C/T V290I plus 23237135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31353 rs7603997 ITSN2 50618 2 24436609 NM_006277 NP_006268 C/T V290I plus 23237135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31354 rs7603997 ITSN2 50618 2 24436609 NM_019595 NP_062541 C/T V290I plus 11519079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31355 rs7603997 ITSN2 50618 2 24436609 NM_019595 NP_062541 C/T V290I plus 23237135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31356 rs7603997 ITSN2 50618 2 24436609 NM_019595 NP_062541 C/T V290I plus 23237135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31357 rs7603997 ITSN2 50618 2 24436609 NM_019595 NP_062541 C/T V290I plus 23237135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31358 rs7603997 ITSN2 50618 2 24436609 NM_147152 NP_671494 C/T V290I plus 11519079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31359 rs7603997 ITSN2 50618 2 24436609 NM_147152 NP_671494 C/T V290I plus 23237135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31360 rs7603997 ITSN2 50618 2 24436609 NM_147152 NP_671494 C/T V290I plus 23237135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31361 rs7603997 ITSN2 50618 2 24436609 NM_147152 NP_671494 C/T V290I plus 23237135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 2pter-p25.1 intersectin 2 31362 rs7604639 MERTK 10461 2 112468159 NM_006343 NP_006334 A/G R466K plus 24311085 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 31363 rs7604639 MERTK 10461 2 112468159 NM_006343 NP_006334 A/G R466K plus 24311085 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 31364 rs7604639 MERTK 10461 2 112468159 NM_006343 NP_006334 A/G R466K plus 24311085 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2q14.1 c-mer proto-oncogene tyrosine kinase 31365 rs7605170 SH3MD4 344558 2 109531295 XM_293090 XP_293090 C/T R614X plus 11521199 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 2q13 SH3 multiple domains 4 31366 rs7607246 CMYA3 129446 2 167929432 XM_496606 XP_496606 A/G N2060S plus 23195993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 31367 rs7607246 CMYA3 129446 2 167929432 XM_496606 XP_496606 A/G N2060S plus 23195993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 31368 rs7607246 CMYA3 129446 2 167929432 XM_496606 XP_496606 A/G N2060S plus 23195993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 2q31.1 cardiomyopathy associated 3 31369 rs7617704 NR2C2 7182 3 15021103 NM_003298 NP_003289 C/G F36L plus 11544327 885 TSC-CSHL HapMap-CEPH-30-trios 104 1 116 "HapMap,doubleHit" 3p25 "nuclear receptor subfamily 2, group C, member 2" 31370 rs7619322 IGSF10 285313 3 152654137 NM_178822 NP_849144 A/C Y150D plus 11547286 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 121 "HapMap,doubleHit,freq,cluster" 3q25.1 "immunoglobulin superfamily, member 10" 31371 rs7623258 SUCLG2 8801 3 67533887 NM_003848 NP_003839 A/G R333W plus 11554599 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,freq,cluster" 3p14.3 "succinate-CoA ligase, GDP-forming, beta subunit" 31372 rs7623258 SUCLG2 8801 3 67533887 NM_003848 NP_003839 A/G R333W plus 23290077 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3p14.3 "succinate-CoA ligase, GDP-forming, beta subunit" 31373 rs7623258 SUCLG2 8801 3 67533887 NM_003848 NP_003839 A/G R333W plus 23290077 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 3p14.3 "succinate-CoA ligase, GDP-forming, beta subunit" 31374 rs7623258 SUCLG2 8801 3 67533887 NM_003848 NP_003839 A/G R333W plus 23290077 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3p14.3 "succinate-CoA ligase, GDP-forming, beta subunit" 31375 rs7624750 OPA1 4976 3 194817693 NM_015560 NP_056375 A/G S158N plus 11557418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 121 "HapMap,doubleHit,freq,cluster" 3q28-q29 optic atrophy 1 (autosomal dominant) 31376 rs7624750 OPA1 4976 3 194817693 NM_130834 NP_570847 A/G S158N plus 11557418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 121 "HapMap,doubleHit,freq,cluster" 3q28-q29 optic atrophy 1 (autosomal dominant) 31377 rs7624750 OPA1 4976 3 194817693 NM_130836 NP_570849 A/G S158N plus 11557418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 121 "HapMap,doubleHit,freq,cluster" 3q28-q29 optic atrophy 1 (autosomal dominant) 31378 rs7624750 OPA1 4976 3 194817693 NM_130837 NP_570850 A/G S158N plus 11557418 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 121 "HapMap,doubleHit,freq,cluster" 3q28-q29 optic atrophy 1 (autosomal dominant) 31379 rs7628051 NUP210 23225 3 13396150 NM_024923 NP_079199 C/T A297T plus 24306788 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 31380 rs7628051 NUP210 23225 3 13396150 NM_024923 NP_079199 C/T A297T plus 24306788 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.24 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 31381 rs7628051 NUP210 23225 3 13396150 NM_024923 NP_079199 C/T A297T plus 24306788 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 "by doubleHit,freq,cluster" 3p25.2-p25.1 nucleoporin 210 31382 rs7632885 CLSTN2 64084 3 141661183 NM_022131 NP_071414 A/G V366I plus 23297518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 3q23-q24 calsyntenin 2 31383 rs7632885 CLSTN2 64084 3 141661183 NM_022131 NP_071414 A/G V366I plus 23297518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 3q23-q24 calsyntenin 2 31384 rs7632885 CLSTN2 64084 3 141661183 NM_022131 NP_071414 A/G V366I plus 23297518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 3q23-q24 calsyntenin 2 31385 rs7633228 GBE1 2632 3 81709865 NM_000158 NP_000149 C/T T507A plus 11573206 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 123 "HapMap,doubleHit,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 31386 rs7633228 GBE1 2632 3 81709865 NM_000158 NP_000149 C/T T507A plus 23195228 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 31387 rs7633228 GBE1 2632 3 81709865 NM_000158 NP_000149 C/T T507A plus 23195228 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 31388 rs7633228 GBE1 2632 3 81709865 NM_000158 NP_000149 C/T T507A plus 23195228 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 3p12.3 "glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)" 31389 rs7640654 ZNF502 91392 3 44738041 NM_033210 NP_149987 A/C E243A plus 11586991 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 119 "HapMap,doubleHit,freq,cluster" 3p21.32 zinc finger protein 502 31390 rs7645550 KCNMB3 27094 3 180451336 NM_014407 NP_055222 C/T A53T plus 24675273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31391 rs7645550 KCNMB3 27094 3 180451336 NM_014407 NP_055222 C/T A53T plus 24675273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31392 rs7645550 KCNMB3 27094 3 180451336 NM_014407 NP_055222 C/T A53T plus 24675273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31393 rs7645550 KCNMB3 27094 3 180451336 NM_171828 NP_741979 C/T A51T plus 24675273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31394 rs7645550 KCNMB3 27094 3 180451336 NM_171828 NP_741979 C/T A51T plus 24675273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31395 rs7645550 KCNMB3 27094 3 180451336 NM_171828 NP_741979 C/T A51T plus 24675273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31396 rs7645550 KCNMB3 27094 3 180451336 NM_171829 NP_741980 C/T A31T plus 24675273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31397 rs7645550 KCNMB3 27094 3 180451336 NM_171829 NP_741980 C/T A31T plus 24675273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31398 rs7645550 KCNMB3 27094 3 180451336 NM_171829 NP_741980 C/T A31T plus 24675273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31399 rs7645550 KCNMB3 27094 3 180451336 NM_171830 NP_741981 C/T A49T plus 24675273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31400 rs7645550 KCNMB3 27094 3 180451336 NM_171830 NP_741981 C/T A49T plus 24675273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31401 rs7645550 KCNMB3 27094 3 180451336 NM_171830 NP_741981 C/T A49T plus 24675273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 3q26.3-q27 "potassium large conductance calcium-activated channel, subfamily M beta member 3" 31402 rs7651620 HRH1 3269 3 11276532 NM_000861 NP_000852 A/G G270E plus 23176580 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 3p25 histamine receptor H1 31403 rs7651620 HRH1 3269 3 11276532 NM_000861 NP_000852 A/G G270E plus 23176580 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 3p25 histamine receptor H1 31404 rs7651620 HRH1 3269 3 11276532 NM_000861 NP_000852 A/G G270E plus 23176580 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 3p25 histamine receptor H1 31405 rs7652177 FAD104 64778 3 173451779 NM_022763 NP_073600 C/G T179S plus 11608363 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.48 123 "HapMap,doubleHit,freq,cluster" 3q26.31 FAD104 31406 rs7652177 FAD104 64778 3 173451779 NM_022763 NP_073600 C/G T179S plus 24320573 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 3q26.31 FAD104 31407 rs7652177 FAD104 64778 3 173451779 NM_022763 NP_073600 C/G T179S plus 24320573 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 3q26.31 FAD104 31408 rs7652177 FAD104 64778 3 173451779 NM_022763 NP_073600 C/G T179S plus 24320573 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 3q26.31 FAD104 31409 rs7671281 ENAM 10117 4 71874121 NM_031889 NP_114095 C/T I648T plus 23360020 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 4q21.1 enamelin 31410 rs7671281 ENAM 10117 4 71874121 NM_031889 NP_114095 C/T I648T plus 23360020 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 4q21.1 enamelin 31411 rs7671281 ENAM 10117 4 71874121 NM_031889 NP_114095 C/T I648T plus 23360020 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 4q21.1 enamelin 31412 rs7675987 SCFD2 152579 4 53852454 NM_152540 NP_689753 A/G L512S plus 24383719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 4q12 sec1 family domain containing 2 31413 rs7675987 SCFD2 152579 4 53852454 NM_152540 NP_689753 A/G L512S plus 24383719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by doubleHit,freq,cluster" 4q12 sec1 family domain containing 2 31414 rs7675987 SCFD2 152579 4 53852454 NM_152540 NP_689753 A/G L512S plus 24383719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 4q12 sec1 family domain containing 2 31415 rs7677237 HERC6 55008 4 89663837 XM_496710 XP_496710 C/T M198T plus 23237650 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 4q22.1 hect domain and RLD 6 31416 rs7677237 HERC6 55008 4 89663837 XM_496710 XP_496710 C/T M198T plus 23237650 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 4q22.1 hect domain and RLD 6 31417 rs7677237 HERC6 55008 4 89663837 XM_496710 XP_496710 C/T M198T plus 23237650 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4q22.1 hect domain and RLD 6 31418 rs7679941 RGS12 6002 4 3355539 NM_002926 NP_002917 A/G I225V plus 23251201 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31419 rs7679941 RGS12 6002 4 3355539 NM_002926 NP_002917 A/G I225V plus 23251201 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31420 rs7679941 RGS12 6002 4 3355539 NM_002926 NP_002917 A/G I225V plus 23251201 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31421 rs7679941 RGS12 6002 4 3355539 NM_198229 NP_937872 A/G I225V plus 23251201 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31422 rs7679941 RGS12 6002 4 3355539 NM_198229 NP_937872 A/G I225V plus 23251201 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31423 rs7679941 RGS12 6002 4 3355539 NM_198229 NP_937872 A/G I225V plus 23251201 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31424 rs7679941 RGS12 6002 4 3355539 NM_198432 NP_940834 A/G I225V plus 23251201 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31425 rs7679941 RGS12 6002 4 3355539 NM_198432 NP_940834 A/G I225V plus 23251201 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31426 rs7679941 RGS12 6002 4 3355539 NM_198432 NP_940834 A/G I225V plus 23251201 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p16.3 regulator of G-protein signalling 12 31427 rs7693453 WDR17 116966 4 177457218 NM_170710 NP_733828 C/G C913S plus 23207877 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by cluster,freq" 4q34 WD repeat domain 17 31428 rs7693453 WDR17 116966 4 177457218 NM_170710 NP_733828 C/G C913S plus 23207877 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 4q34 WD repeat domain 17 31429 rs7693453 WDR17 116966 4 177457218 NM_170710 NP_733828 C/G C913S plus 23207877 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 4q34 WD repeat domain 17 31430 rs7698628 SPARCL1 8404 4 88773367 NM_004684 NP_004675 G/T A49D plus 11692482 1303 SEQUENOM CEPH CEPH (92) 92 0.31 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 31431 rs7698628 SPARCL1 8404 4 88773367 NM_004684 NP_004675 G/T A49D plus 23881474 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 31432 rs7698628 SPARCL1 8404 4 88773367 NM_004684 NP_004675 G/T A49D plus 23881474 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 31433 rs7698628 SPARCL1 8404 4 88773367 NM_004684 NP_004675 G/T A49D plus 23881474 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 4q22.1 "SPARC-like 1 (mast9, hevin)" 31434 rs7699006 HERC5 51191 4 89754269 NM_016323 NP_057407 A/G M498V plus 23238101 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 4q22.1-q23 hect domain and RLD 5 31435 rs7699006 HERC5 51191 4 89754269 NM_016323 NP_057407 A/G M498V plus 23238101 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 4q22.1-q23 hect domain and RLD 5 31436 rs7699006 HERC5 51191 4 89754269 NM_016323 NP_057407 A/G M498V plus 23238101 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 4q22.1-q23 hect domain and RLD 5 31437 rs7700801 DMXL1 1657 5 118479850 NM_005509 NP_005500 G/T I221M plus 11696491 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q22 Dmx-like 1 31438 rs7700833 PCDHB8 56128 5 140538764 NM_019120 NP_061993 C/T A322V plus 23351129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 8 31439 rs7700833 PCDHB8 56128 5 140538764 NM_019120 NP_061993 C/T A322V plus 23351129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 8 31440 rs7700833 PCDHB8 56128 5 140538764 NM_019120 NP_061993 C/T A322V plus 23351129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5q31 protocadherin beta 8 31441 rs7706614 JMJD1B 51780 5 137782707 NM_016604 NP_057688 A/G S1201N plus 24657666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq" 5q31 jumonji domain containing 1B 31442 rs7706614 JMJD1B 51780 5 137782707 NM_016604 NP_057688 A/G S1201N plus 24657666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 5q31 jumonji domain containing 1B 31443 rs7706614 JMJD1B 51780 5 137782707 NM_016604 NP_057688 A/G S1201N plus 24657666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq" 5q31 jumonji domain containing 1B 31444 rs7708105 ODZ2 57451 5 167275887 XM_047995 XP_047995 C/T L172P plus 11710844 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.32 121 "HapMap,doubleHit,freq,cluster" 5q35.1 odd Oz/ten-m homolog 2 31445 rs7709485 GPR151 134391 5 145875089 NM_194251 NP_919227 C/G L248V plus 24353999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 5q32 G protein-coupled receptor 151 31446 rs7709485 GPR151 134391 5 145875089 NM_194251 NP_919227 C/G L248V plus 24353999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 5q32 G protein-coupled receptor 151 31447 rs7709485 GPR151 134391 5 145875089 NM_194251 NP_919227 C/G L248V plus 24353999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 5q32 G protein-coupled receptor 151 31448 rs7713638 TCOF1 6949 5 149739289 NM_000356 NP_000347 C/T V810A plus 11721677 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,doubleHit,freq,cluster" 5q32-q33.1 Treacher Collins-Franceschetti syndrome 1 31449 rs7715021 APBB3 10307 5 139922127 NM_006051 NP_006042 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31450 rs7715021 APBB3 10307 5 139922127 NM_133172 NP_573418 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31451 rs7715021 APBB3 10307 5 139922127 NM_133173 NP_573419 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31452 rs7715021 APBB3 10307 5 139922127 NM_133174 NP_573420 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31453 rs7715021 APBB3 10307 5 139922127 NM_133175 NP_573421 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31454 rs7715021 APBB3 10307 5 139922127 NM_133176 NP_573422 C/G G165R plus 11724406 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 5q31 "amyloid beta (A4) precursor protein-binding, family B, member 3" 31455 rs7718054 FAT2 2196 5 150889005 NM_001447 NP_001438 C/T R3318Q plus 23296184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.07 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 31456 rs7718054 FAT2 2196 5 150889005 NM_001447 NP_001438 C/T R3318Q plus 23296184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 31457 rs7718054 FAT2 2196 5 150889005 NM_001447 NP_001438 C/T R3318Q plus 23296184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 31458 rs7719346 EPB41L4A 64097 5 111558183 NM_022140 NP_071423 A/G Y495H plus 24428166 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 31459 rs7719346 EPB41L4A 64097 5 111558183 NM_022140 NP_071423 A/G Y495H plus 24428166 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 31460 rs7719346 EPB41L4A 64097 5 111558183 NM_022140 NP_071423 A/G Y495H plus 24428166 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q22.2 erythrocyte membrane protein band 4.1 like 4A 31461 rs7731453 HMMR 3161 5 162843653 NM_012484 NP_036616 A/C L595I plus 23311809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31462 rs7731453 HMMR 3161 5 162843653 NM_012484 NP_036616 A/C L595I plus 23311809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31463 rs7731453 HMMR 3161 5 162843653 NM_012484 NP_036616 A/C L595I plus 23311809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31464 rs7731453 HMMR 3161 5 162843653 NM_012485 NP_036617 A/C L580I plus 23311809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31465 rs7731453 HMMR 3161 5 162843653 NM_012485 NP_036617 A/C L580I plus 23311809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31466 rs7731453 HMMR 3161 5 162843653 NM_012485 NP_036617 A/C L580I plus 23311809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q33.2-qter hyaluronan-mediated motility receptor (RHAMM) 31467 rs7732671 PPARGC1B 133522 5 149192436 NM_133263 NP_573570 C/G A203P plus 24658264 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 31468 rs7732671 PPARGC1B 133522 5 149192436 NM_133263 NP_573570 C/G A203P plus 24658264 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 31469 rs7732671 PPARGC1B 133522 5 149192436 NM_133263 NP_573570 C/G A203P plus 24658264 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 31470 rs7733604 AP3S1 1176 5 115276977 NM_001284 NP_001275 C/T P158L plus 11760726 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,cluster" 5q22 "adaptor-related protein complex 3, sigma 1 subunit" 31471 rs7737306 MRPS30 10884 5 44849075 NM_016640 NP_057724 A/G V322I plus 11768075 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 5q11 mitochondrial ribosomal protein S30 31472 rs7745238 BTN2A3 54718 6 26531296 NM_024018 NP_076923 A/G G79D plus 24367572 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 31473 rs7745238 BTN2A3 54718 6 26531296 NM_024018 NP_076923 A/G G79D plus 24367572 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.21 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 31474 rs7745238 BTN2A3 54718 6 26531296 NM_024018 NP_076923 A/G G79D plus 24367572 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 6p22.1 "butyrophilin, subfamily 2, member A3" 31475 rs7757931 UBD 10537 6 29631649 NM_006398 NP_006389 A/C C162F plus 23299314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 31476 rs7757931 UBD 10537 6 29631649 NM_006398 NP_006389 A/C C162F plus 23299314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 31477 rs7757931 UBD 10537 6 29631649 NM_006398 NP_006389 A/C C162F plus 23299314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p21.3 ubiquitin D 31478 rs7761137 CAPN11 11131 6 44259468 NM_007058 NP_008989 A/G S691N plus 11813519 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.23 116 "HapMap,doubleHit,freq" 6p12 calpain 11 31479 rs7761731 CYP39A1 51302 6 46671776 NM_016593 NP_057677 A/T N324K plus 23353458 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 31480 rs7761731 CYP39A1 51302 6 46671776 NM_016593 NP_057677 A/T N324K plus 23353458 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 31481 rs7761731 CYP39A1 51302 6 46671776 NM_016593 NP_057677 A/T N324K plus 23353458 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 31482 rs7763726 FNDC1 84624 6 159640511 XM_027658 XP_027658 A/G T403A plus 24145979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "by doubleHit,freq,cluster" 6q25 fibronectin type III domain containing 1 31483 rs7763726 FNDC1 84624 6 159640511 XM_027658 XP_027658 A/G T403A plus 24145979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.23 123 "by doubleHit,freq,cluster" 6q25 fibronectin type III domain containing 1 31484 rs7763726 FNDC1 84624 6 159640511 XM_027658 XP_027658 A/G T403A plus 24145979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "by doubleHit,freq,cluster" 6q25 fibronectin type III domain containing 1 31485 rs7769759 TLT4 285852 6 41305835 NM_198153 NP_937796 C/T T168I plus 23352368 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 31486 rs7769759 TLT4 285852 6 41305835 NM_198153 NP_937796 C/T T168I plus 23352368 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 31487 rs7769759 TLT4 285852 6 41305835 NM_198153 NP_937796 C/T T168I plus 23352368 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 31488 rs7771473 AKAP7 9465 6 131508174 NM_016377 NP_057461 A/G E4K plus 23384232 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 31489 rs7771473 AKAP7 9465 6 131508174 NM_016377 NP_057461 A/G E4K plus 23384232 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 31490 rs7771473 AKAP7 9465 6 131508174 NM_016377 NP_057461 A/G E4K plus 23384232 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q23 A kinase (PRKA) anchor protein 7 31491 rs7774330 CUL7 9820 6 43124265 NM_014780 NP_055595 C/T S616G plus 11838477 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 6p21.1 cullin 7 31492 rs7775119 SYNE1 23345 6 152763457 NM_182961 NP_892006 C/G S3954T plus 23499532 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 31493 rs7775119 SYNE1 23345 6 152763457 NM_182961 NP_892006 C/G S3954T plus 23499532 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 31494 rs7775119 SYNE1 23345 6 152763457 NM_182961 NP_892006 C/G S3954T plus 23499532 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q25 "spectrin repeat containing, nuclear envelope 1" 31495 rs7785206 CROT 54677 7 86665674 NM_021151 NP_066974 C/G V474L plus 23472360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 7q21.1 carnitine O-octanoyltransferase 31496 rs7785206 CROT 54677 7 86665674 NM_021151 NP_066974 C/G V474L plus 23472360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 7q21.1 carnitine O-octanoyltransferase 31497 rs7785206 CROT 54677 7 86665674 NM_021151 NP_066974 C/G V474L plus 23472360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 7q21.1 carnitine O-octanoyltransferase 31498 rs7787378 OR6B1 135946 7 143139164 XM_069621 XP_069621 C/T R143C plus 23963754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 7q35 "olfactory receptor, family 6, subfamily B, member 1" 31499 rs7787378 OR6B1 135946 7 143139164 XM_069621 XP_069621 C/T R143C plus 23963754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 7q35 "olfactory receptor, family 6, subfamily B, member 1" 31500 rs7787378 OR6B1 135946 7 143139164 XM_069621 XP_069621 C/T R143C plus 23963754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by cluster,freq" 7q35 "olfactory receptor, family 6, subfamily B, member 1" 31501 rs7792760 MYO1G 64005 7 44777303 XM_291223 XP_291223 C/T Q861R plus 11872647 885 TSC-CSHL HapMap-CEPH-30-trios 108 0.17 123 "HapMap,freq,cluster" 7p13-p11.2 myosin IG 31502 rs7792760 MYO1G 64005 7 44777303 XM_291223 XP_291223 C/T Q861R plus 24461339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "HapMap,freq,cluster" 7p13-p11.2 myosin IG 31503 rs7792760 MYO1G 64005 7 44777303 XM_291223 XP_291223 C/T Q861R plus 24461339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 7p13-p11.2 myosin IG 31504 rs7792760 MYO1G 64005 7 44777303 XM_291223 XP_291223 C/T Q861R plus 24461339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "HapMap,freq,cluster" 7p13-p11.2 myosin IG 31505 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 14892116 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31506 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 14892116 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31507 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 14892116 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31508 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 14892116 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31509 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 14892116 905 AFFY PDpanel 48 0.06 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31510 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 23454348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31511 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 23454348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31512 rs7805950 FBXL13 222235 7 102261952 NM_145032 NP_659469 A/C I74M plus 23454348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 7q22.1 F-box and leucine-rich repeat protein 13 31513 rs7814768 ADAM28 10863 8 24267276 NM_014265 NP_055080 A/G V765M plus 23809149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31514 rs7814768 ADAM28 10863 8 24267276 NM_014265 NP_055080 A/G V765M plus 23809149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31515 rs7814768 ADAM28 10863 8 24267276 NM_014265 NP_055080 A/G V765M plus 23809149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31516 rs7814768 ADAM28 10863 8 24267276 NM_021778 NP_068548 A/G V765M plus 23809149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31517 rs7814768 ADAM28 10863 8 24267276 NM_021778 NP_068548 A/G V765M plus 23809149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31518 rs7814768 ADAM28 10863 8 24267276 NM_021778 NP_068548 A/G V765M plus 23809149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 28 31519 rs7817179 RCP 80223 8 37847175 NM_025151 NP_079427 A/G M551T plus 24542305 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by cluster,freq" 8p11.22 Rab coupling protein 31520 rs7817179 RCP 80223 8 37847175 NM_025151 NP_079427 A/G M551T plus 24542305 1372 PERLEGEN AFD_AFR_PANEL African American (24) 32 0.13 123 "by cluster,freq" 8p11.22 Rab coupling protein 31521 rs7817179 RCP 80223 8 37847175 NM_025151 NP_079427 A/G M551T plus 24542305 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 8p11.22 Rab coupling protein 31522 rs7819749 TRPA1 8989 8 73138355 NM_007332 NP_015628 G/T K186N plus 24500706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by cluster,freq" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 31523 rs7819749 TRPA1 8989 8 73138355 NM_007332 NP_015628 G/T K186N plus 24500706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 31524 rs7819749 TRPA1 8989 8 73138355 NM_007332 NP_015628 G/T K186N plus 24500706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q13 "transient receptor potential cation channel, subfamily A, member 1" 31525 rs7823773 NCOA6IP 96764 8 56886111 NM_024831 NP_079107 G/T F754C plus 23376433 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 "by cluster,freq" 8q11 nuclear receptor coactivator 6 interacting protein 31526 rs7823773 NCOA6IP 96764 8 56886111 NM_024831 NP_079107 G/T F754C plus 23376433 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 8q11 nuclear receptor coactivator 6 interacting protein 31527 rs7823773 NCOA6IP 96764 8 56886111 NM_024831 NP_079107 G/T F754C plus 23376433 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 8q11 nuclear receptor coactivator 6 interacting protein 31528 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 14899427 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31529 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 14899427 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31530 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 14899427 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31531 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 14899427 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31532 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 14899427 905 AFFY PDpanel 42 0.05 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31533 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 23423284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31534 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 23423284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31535 rs7833870 COH1 157680 8 100860332 NM_017890 NP_060360 C/T V2584A plus 23423284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31536 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 14899427 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31537 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 14899427 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31538 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 14899427 903 AFFY Asian 12 0.08 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31539 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 14899427 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31540 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 14899427 905 AFFY PDpanel 42 0.05 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31541 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 23423284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31542 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 23423284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31543 rs7833870 COH1 157680 8 100860332 NM_152564 NP_689777 C/T V2559A plus 23423284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 8q22.2 Cohen syndrome 1 31544 rs7857490 CARM1L 256280 9 2938195 XM_171224 XP_171224 C/T V219M plus 24685343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31545 rs7857490 CARM1L 256280 9 2938195 XM_171224 XP_171224 C/T V219M plus 24685343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31546 rs7857490 CARM1L 256280 9 2938195 XM_171224 XP_171224 C/T V219M plus 24685343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31547 rs7862467 CARM1L 256280 9 3171278 XM_171224 XP_171224 G/T K56T plus 23766060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31548 rs7862467 CARM1L 256280 9 3171278 XM_171224 XP_171224 G/T K56T plus 23766060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31549 rs7862467 CARM1L 256280 9 3171278 XM_171224 XP_171224 G/T K56T plus 23766060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 9p24.2 coactivator associated arginine methyltransferase 1-like 31550 rs7867180 PAF53 64425 9 37491807 NM_022490 NP_071935 A/G V356M plus 23583290 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 9p13.1 RNA polymerase I associated factor 53 31551 rs7867180 PAF53 64425 9 37491807 NM_022490 NP_071935 A/G V356M plus 23583290 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 9p13.1 RNA polymerase I associated factor 53 31552 rs7867180 PAF53 64425 9 37491807 NM_022490 NP_071935 A/G V356M plus 23583290 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 9p13.1 RNA polymerase I associated factor 53 31553 rs7871785 PSMB7 5695 9 124256715 NM_002799 NP_002790 A/G V39A plus 12017785 1303 SEQUENOM CEPH CEPH (92) 92 0.44 123 "by doubleHit,freq,cluster" 9q34.11-q34.12 "proteasome (prosome, macropain) subunit, beta type, 7" 31554 rs7871785 PSMB7 5695 9 124256715 NM_002799 NP_002790 A/G V39A plus 24524743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 9q34.11-q34.12 "proteasome (prosome, macropain) subunit, beta type, 7" 31555 rs7871785 PSMB7 5695 9 124256715 NM_002799 NP_002790 A/G V39A plus 24524743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 9q34.11-q34.12 "proteasome (prosome, macropain) subunit, beta type, 7" 31556 rs7871785 PSMB7 5695 9 124256715 NM_002799 NP_002790 A/G V39A plus 24524743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 9q34.11-q34.12 "proteasome (prosome, macropain) subunit, beta type, 7" 31557 rs7872077 ACTL7A 10881 9 108705175 NM_006687 NP_006678 A/G V340M plus 24208276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq" 9q31 actin-like 7A 31558 rs7872077 ACTL7A 10881 9 108705175 NM_006687 NP_006678 A/G V340M plus 24208276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 9q31 actin-like 7A 31559 rs7872077 ACTL7A 10881 9 108705175 NM_006687 NP_006678 A/G V340M plus 24208276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by doubleHit,freq" 9q31 actin-like 7A 31560 rs7895372 ITGA8 8516 10 15759627 XM_167711 XP_167711 C/G V346L plus 12675860 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.09 120 "by cluster,freq" 10p13 "integrin, alpha 8" 31561 rs7895372 ITGA8 8516 10 15759627 XM_167711 XP_167711 C/G V346L plus 16361762 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.09 120 "by cluster,freq" 10p13 "integrin, alpha 8" 31562 rs7900194 CYP2C9 1559 10 96692056 NM_000771 NP_000762 A/G R150H plus 12588497 693 EGP_SNPS PDR90 NIHPDR 180 0.02 119 "by cluster,freq" 10q24 "cytochrome P450, family 2, subfamily C, polypeptide 9" 31563 rs7901604 ECHS1 1892 10 135073007 NM_004092 NP_004083 A/G T75I plus 12074823 1303 SEQUENOM CEPH CEPH (92) 92 0.16 123 "by doubleHit,freq,cluster" 10q26.2-q26.3 "enoyl Coenzyme A hydratase, short chain, 1, mitochondrial" 31564 rs7902757 CDH23 64072 10 72869601 NM_022124 NP_071407 C/T R3C plus 23623984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31565 rs7902757 CDH23 64072 10 72869601 NM_022124 NP_071407 C/T R3C plus 23623984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31566 rs7902757 CDH23 64072 10 72869601 NM_022124 NP_071407 C/T R3C plus 23623984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31567 rs7902757 CDH23 64072 10 72869601 NM_052836 NP_443068 C/T R3C plus 23623984 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31568 rs7902757 CDH23 64072 10 72869601 NM_052836 NP_443068 C/T R3C plus 23623984 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31569 rs7902757 CDH23 64072 10 72869601 NM_052836 NP_443068 C/T R3C plus 23623984 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 10q21-q22 cadherin-like 23 31570 rs7903344 CHUK 1147 10 101967873 NM_001278 NP_001269 C/T V268I plus 24035549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 10q24-q25 conserved helix-loop-helix ubiquitous kinase 31571 rs7903344 CHUK 1147 10 101967873 NM_001278 NP_001269 C/T V268I plus 24035549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,freq,cluster" 10q24-q25 conserved helix-loop-helix ubiquitous kinase 31572 rs7903344 CHUK 1147 10 101967873 NM_001278 NP_001269 C/T V268I plus 24035549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q24-q25 conserved helix-loop-helix ubiquitous kinase 31573 rs7908745 MIR 220972 10 45273773 NM_145021 NP_659458 A/G Y266H plus 23587710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10q11.22 "c-mir, cellular modulator of immune recognition" 31574 rs7908745 MIR 220972 10 45273773 NM_145021 NP_659458 A/G Y266H plus 23587710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 10q11.22 "c-mir, cellular modulator of immune recognition" 31575 rs7908745 MIR 220972 10 45273773 NM_145021 NP_659458 A/G Y266H plus 23587710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q11.22 "c-mir, cellular modulator of immune recognition" 31576 rs7910140 ECHDC3 79746 10 11837473 NM_024693 NP_078969 A/G A151T plus 23591761 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 1 123 "by cluster,freq" 10p14 enoyl Coenzyme A hydratase domain containing 3 31577 rs7910140 ECHDC3 79746 10 11837473 NM_024693 NP_078969 A/G A151T plus 23591761 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by cluster,freq" 10p14 enoyl Coenzyme A hydratase domain containing 3 31578 rs7910140 ECHDC3 79746 10 11837473 NM_024693 NP_078969 A/G A151T plus 23591761 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 "by cluster,freq" 10p14 enoyl Coenzyme A hydratase domain containing 3 31579 rs7916821 MYPN 84665 10 69603975 NM_032578 NP_115967 A/G S707N plus 24557036 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 31580 rs7916821 MYPN 84665 10 69603975 NM_032578 NP_115967 A/G S707N plus 24557036 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 31581 rs7916821 MYPN 84665 10 69603975 NM_032578 NP_115967 A/G S707N plus 24557036 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 31582 rs7918793 ACBD5 91452 10 27537197 NM_145698 NP_663736 A/G T428M plus 23772910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 10p12.1 acyl-Coenzyme A binding domain containing 5 31583 rs7918793 ACBD5 91452 10 27537197 NM_145698 NP_663736 A/G T428M plus 23772910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 10p12.1 acyl-Coenzyme A binding domain containing 5 31584 rs7918793 ACBD5 91452 10 27537197 NM_145698 NP_663736 A/G T428M plus 23772910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 10p12.1 acyl-Coenzyme A binding domain containing 5 31585 rs7922946 CWF19L1 55280 10 101983014 NM_018294 NP_060764 C/T R526Q plus 12115696 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 10q24.31 "CWF19-like 1, cell cycle control (S. pombe)" 31586 rs7924602 ACTN3 89 11 66085317 NM_001104 NP_001095 A/C E635A plus 24659211 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by doubleHit,freq,cluster" 11q13-q14 "actinin, alpha 3" 31587 rs7924602 ACTN3 89 11 66085317 NM_001104 NP_001095 A/C E635A plus 24659211 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by doubleHit,freq,cluster" 11q13-q14 "actinin, alpha 3" 31588 rs7924602 ACTN3 89 11 66085317 NM_001104 NP_001095 A/C E635A plus 24659211 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 11q13-q14 "actinin, alpha 3" 31589 rs7926767 OR8D4 338662 11 123282746 XM_291838 XP_291838 A/G R133K plus 23633781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31590 rs7926767 OR8D4 338662 11 123282746 XM_291838 XP_291838 A/G R133K plus 23633781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31591 rs7926767 OR8D4 338662 11 123282746 XM_291838 XP_291838 A/G R133K plus 23633781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31592 rs7926933 MPEG1 219972 11 58735260 XM_166227 XP_166227 A/G P552L plus 24098899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 11q12.2 macrophage expressed gene 1 31593 rs7926933 MPEG1 219972 11 58735260 XM_166227 XP_166227 A/G P552L plus 24098899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 11q12.2 macrophage expressed gene 1 31594 rs7926933 MPEG1 219972 11 58735260 XM_166227 XP_166227 A/G P552L plus 24098899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q12.2 macrophage expressed gene 1 31595 rs7927015 OR8U1 219417 11 55884405 XM_166805 XP_166805 G/T G36V plus 24667448 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 31596 rs7927015 OR8U1 219417 11 55884405 XM_166805 XP_166805 G/T G36V plus 24667448 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 31597 rs7927015 OR8U1 219417 11 55884405 XM_166805 XP_166805 G/T G36V plus 24667448 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 31598 rs7927138 OVTN 341277 11 7684462 NM_198185 NP_937828 C/T R19Q plus 24223822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 34 0.41 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 31599 rs7927138 OVTN 341277 11 7684462 NM_198185 NP_937828 C/T R19Q plus 24223822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.28 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 31600 rs7927138 OVTN 341277 11 7684462 NM_198185 NP_937828 C/T R19Q plus 24223822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 22 0.5 123 "by doubleHit,freq,cluster" 11p15.4 oviductin protease 31601 rs7927385 OR8D4 338662 11 123283241 XM_291838 XP_291838 A/G R298K plus 23633836 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31602 rs7927385 OR8D4 338662 11 123283241 XM_291838 XP_291838 A/G R298K plus 23633836 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31603 rs7927385 OR8D4 338662 11 123283241 XM_291838 XP_291838 A/G R298K plus 23633836 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31604 rs7930678 OR5R1 219479 11 55941735 XM_166831 XP_166831 A/G F184L plus 23606124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31605 rs7930678 OR5R1 219479 11 55941735 XM_166831 XP_166831 A/G F184L plus 23606124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31606 rs7930678 OR5R1 219479 11 55941735 XM_166831 XP_166831 A/G F184L plus 23606124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31607 rs7931261 OR5R1 219479 11 55942265 XM_166831 XP_166831 A/G I7T plus 23606165 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31608 rs7931261 OR5R1 219479 11 55942265 XM_166831 XP_166831 A/G I7T plus 23606165 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31609 rs7931261 OR5R1 219479 11 55942265 XM_166831 XP_166831 A/G I7T plus 23606165 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31610 rs7933549 OR51V1 283111 11 5177809 XM_210181 XP_210181 A/G S233L plus 12136879 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit" 11p15.4 "olfactory receptor, family 51, subfamily V, member 1" 31611 rs7933772 OR5R1 219479 11 55941903 XM_166831 XP_166831 C/T S128G plus 23606144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31612 rs7933772 OR5R1 219479 11 55941903 XM_166831 XP_166831 C/T S128G plus 23606144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31613 rs7933772 OR5R1 219479 11 55941903 XM_166831 XP_166831 C/T S128G plus 23606144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 31614 rs7935144 OR52D1 390066 11 5466972 XM_372359 XP_372359 C/T R154C plus 23557961 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 31615 rs7935144 OR52D1 390066 11 5466972 XM_372359 XP_372359 C/T R154C plus 23557961 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 31616 rs7935144 OR52D1 390066 11 5466972 XM_372359 XP_372359 C/T R154C plus 23557961 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 52, subfamily D, member 1" 31617 rs7936020 ARHGAP20 57569 11 109959523 NM_020809 NP_065860 C/T A499T plus 23580900 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11q23.2 Rho GTPase activating protein 20 31618 rs7936020 ARHGAP20 57569 11 109959523 NM_020809 NP_065860 C/T A499T plus 23580900 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 11q23.2 Rho GTPase activating protein 20 31619 rs7936020 ARHGAP20 57569 11 109959523 NM_020809 NP_065860 C/T A499T plus 23580900 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 11q23.2 Rho GTPase activating protein 20 31620 rs7936324 OTOG 340990 11 17572180 XM_291816 XP_291816 C/T A127V plus 23640373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31621 rs7936324 OTOG 340990 11 17572180 XM_291816 XP_291816 C/T A127V plus 23640373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31622 rs7936324 OTOG 340990 11 17572180 XM_291816 XP_291816 C/T A127V plus 23640373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31623 rs7936354 OTOG 340990 11 17572231 XM_291816 XP_291816 C/T P144L plus 23640384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31624 rs7936354 OTOG 340990 11 17572231 XM_291816 XP_291816 C/T P144L plus 23640384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31625 rs7936354 OTOG 340990 11 17572231 XM_291816 XP_291816 C/T P144L plus 23640384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.1 otogelin 31626 rs7938203 SKD3 81570 11 71718478 NM_030813 NP_110440 C/G R295T plus 12146128 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,cluster" 11q13.3 suppressor of potassium transport defect 3 31627 rs7938203 SKD3 81570 11 71718478 NM_030813 NP_110440 C/G R295T plus 23731818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,cluster" 11q13.3 suppressor of potassium transport defect 3 31628 rs7938203 SKD3 81570 11 71718478 NM_030813 NP_110440 C/G R295T plus 23731818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,cluster" 11q13.3 suppressor of potassium transport defect 3 31629 rs7938203 SKD3 81570 11 71718478 NM_030813 NP_110440 C/G R295T plus 23731818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,cluster" 11q13.3 suppressor of potassium transport defect 3 31630 rs7938371 OR10A4 283297 11 6855116 NM_207186 NP_997069 A/G R221H plus 23537435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 31631 rs7938371 OR10A4 283297 11 6855116 NM_207186 NP_997069 A/G R221H plus 23537435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 31632 rs7938371 OR10A4 283297 11 6855116 NM_207186 NP_997069 A/G R221H plus 23537435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 31633 rs7941190 OR5AN1 390195 11 58889374 XM_372411 XP_372411 C/G L289F plus 12152039 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.32 120 "HapMap,doubleHit,freq,cluster" 11q12.2 "olfactory receptor, family 5, subfamily AN, member 1" 31634 rs7941731 OR52R1 119695 11 4781801 XM_061627 XP_061627 A/G I129T plus 23548403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 31635 rs7941731 OR52R1 119695 11 4781801 XM_061627 XP_061627 A/G I129T plus 23548403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 22 0.5 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 31636 rs7941731 OR52R1 119695 11 4781801 XM_061627 XP_061627 A/G I129T plus 23548403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 31637 rs7942047 OR8D4 338662 11 123283196 XM_291838 XP_291838 C/T L283P plus 12153764 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 123 "HapMap,doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31638 rs7942047 OR8D4 338662 11 123283196 XM_291838 XP_291838 C/T L283P plus 24120786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "HapMap,doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31639 rs7942047 OR8D4 338662 11 123283196 XM_291838 XP_291838 C/T L283P plus 24120786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "HapMap,doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31640 rs7942047 OR8D4 338662 11 123283196 XM_291838 XP_291838 C/T L283P plus 24120786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 31641 rs7948009 OR52N1 79473 11 5766124 XM_372364 XP_372364 A/G R167C plus 12165629 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.35 121 "HapMap,doubleHit,freq,cluster" 11 "olfactory receptor, family 52, subfamily N, member 1" 31642 rs7948666 XLKD1 10894 11 10537260 NM_006691 NP_006682 C/T V315M plus 23564140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11p15 extracellular link domain containing 1 31643 rs7948666 XLKD1 10894 11 10537260 NM_006691 NP_006682 C/T V315M plus 23564140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 11p15 extracellular link domain containing 1 31644 rs7948666 XLKD1 10894 11 10537260 NM_006691 NP_006682 C/T V315M plus 23564140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11p15 extracellular link domain containing 1 31645 rs7949157 FAT3 120114 11 92171004 XM_061871 XP_061871 A/G Q222R plus 12167955 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 31646 rs7949157 FAT3 120114 11 92171004 XM_061871 XP_061871 A/G Q222R plus 23605758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 31647 rs7949157 FAT3 120114 11 92171004 XM_061871 XP_061871 A/G Q222R plus 23605758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 31648 rs7949157 FAT3 120114 11 92171004 XM_061871 XP_061871 A/G Q222R plus 23605758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq,cluster" 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 31649 rs7950873 HBXAP 51773 11 77090499 NM_016578 NP_057662 A/G S475P plus 12171343 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq" 11q13.4 hepatitis B virus x associated protein 31650 rs7950873 HBXAP 51773 11 77090499 NM_016578 NP_057662 A/G S475P plus 24415990 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.28 123 "HapMap,doubleHit,freq" 11q13.4 hepatitis B virus x associated protein 31651 rs7950873 HBXAP 51773 11 77090499 NM_016578 NP_057662 A/G S475P plus 24415990 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq" 11q13.4 hepatitis B virus x associated protein 31652 rs7950873 HBXAP 51773 11 77090499 NM_016578 NP_057662 A/G S475P plus 24415990 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.14 123 "HapMap,doubleHit,freq" 11q13.4 hepatitis B virus x associated protein 31653 rs7953309 KLRA1 10748 12 10639787 NM_006611 NP_006602 C/T Q71R plus 23787556 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 31654 rs7953309 KLRA1 10748 12 10639787 NM_006611 NP_006602 C/T Q71R plus 23787556 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 31655 rs7953309 KLRA1 10748 12 10639787 NM_006611 NP_006602 C/T Q71R plus 23787556 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13-p12 "killer cell lectin-like receptor subfamily A, member 1" 31656 rs7955371 PRKWNK1 65125 12 864748 NM_018979 NP_061852 C/G C1506S plus 12179891 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 31657 rs7955371 PRKWNK1 65125 12 864748 NM_018979 NP_061852 C/G C1506S plus 23775739 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 31658 rs7955371 PRKWNK1 65125 12 864748 NM_018979 NP_061852 C/G C1506S plus 23775739 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 31659 rs7955371 PRKWNK1 65125 12 864748 NM_018979 NP_061852 C/G C1506S plus 23775739 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 31660 rs7955866 FGF23 8074 12 4349810 NM_020638 NP_065689 A/G T239M plus 22969966 693 EGP_SNPS PDR90 NIHPDR 180 0.17 123 "by doubleHit,freq,cluster" 12p13.3 fibroblast growth factor 23 31661 rs7955866 FGF23 8074 12 4349810 NM_020638 NP_065689 A/G T239M plus 24694339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 12p13.3 fibroblast growth factor 23 31662 rs7955866 FGF23 8074 12 4349810 NM_020638 NP_065689 A/G T239M plus 24694339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 12p13.3 fibroblast growth factor 23 31663 rs7955866 FGF23 8074 12 4349810 NM_020638 NP_065689 A/G T239M plus 24694339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 12p13.3 fibroblast growth factor 23 31664 rs7958311 P2RX7 5027 12 120068075 NM_002562 NP_002553 A/G R270H plus 24009654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 31665 rs7958311 P2RX7 5027 12 120068075 NM_002562 NP_002553 A/G R270H plus 24009654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 31666 rs7958311 P2RX7 5027 12 120068075 NM_002562 NP_002553 A/G R270H plus 24009654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 31667 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 14880357 901 AFFY AfAm 8 0.25 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31668 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 14880357 902 AFFY Caucasian 24 1 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31669 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 14880357 903 AFFY Asian 12 1 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31670 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 14880357 904 AFFY CEPH 10 1 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31671 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 14880357 905 AFFY PDpanel 44 0.02 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31672 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 23779202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31673 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 23779202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31674 rs7961645 FGF6 2251 12 4413748 NM_020996 NP_066276 A/T D174V plus 23779202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13 fibroblast growth factor 6 31675 rs7969931 LRMP 4033 12 25133862 NM_006152 NP_006143 C/G L141V plus 24436008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 31676 rs7969931 LRMP 4033 12 25133862 NM_006152 NP_006143 C/G L141V plus 24436008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 31677 rs7969931 LRMP 4033 12 25133862 NM_006152 NP_006143 C/G L141V plus 24436008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 12p12.1 lymphoid-restricted membrane protein 31678 rs7970387 GRIP1 23426 12 65072358 XM_290559 XP_290559 C/G Q769E plus 23794275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 12q14.2 glutamate receptor interacting protein 1 31679 rs7970387 GRIP1 23426 12 65072358 XM_290559 XP_290559 C/G Q769E plus 23794275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 12q14.2 glutamate receptor interacting protein 1 31680 rs7970387 GRIP1 23426 12 65072358 XM_290559 XP_290559 C/G Q769E plus 23794275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12q14.2 glutamate receptor interacting protein 1 31681 rs7971718 OVOS2 144203 12 31202250 XM_495917 XP_495917 A/G T211M plus 24360561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 12p11.22 ovostatin 2 31682 rs7971718 OVOS2 144203 12 31202250 XM_495917 XP_495917 A/G T211M plus 24360561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 12p11.22 ovostatin 2 31683 rs7971718 OVOS2 144203 12 31202250 XM_495917 XP_495917 A/G T211M plus 24360561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 12p11.22 ovostatin 2 31684 rs7978197 CPM 1368 12 67612814 NM_001874 NP_001865 C/T R24H plus 12222638 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 116 "HapMap,doubleHit,freq" 12q14.3 carboxypeptidase M 31685 rs7978197 CPM 1368 12 67612814 NM_198320 NP_938079 C/T R24H plus 12222638 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 116 "HapMap,doubleHit,freq" 12q14.3 carboxypeptidase M 31686 rs7986131 LMO7 4008 13 75321249 NM_005358 NP_005349 C/T M1113T plus 23954179 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31687 rs7986131 LMO7 4008 13 75321249 NM_005358 NP_005349 C/T M1113T plus 23954179 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31688 rs7986131 LMO7 4008 13 75321249 NM_005358 NP_005349 C/T M1113T plus 23954179 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31689 rs7988661 LMO7 4008 13 75325348 NM_005358 NP_005349 A/C P1213Q plus 23355857 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31690 rs7988661 LMO7 4008 13 75325348 NM_005358 NP_005349 A/C P1213Q plus 23355857 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31691 rs7988661 LMO7 4008 13 75325348 NM_005358 NP_005349 A/C P1213Q plus 23355857 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q21.33 LIM domain only 7 31692 rs7990383 COL4A2 1284 13 109909236 NM_001846 NP_001837 A/G R517K plus 24556924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.4 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 31693 rs7990383 COL4A2 1284 13 109909236 NM_001846 NP_001837 A/G R517K plus 24556924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 31694 rs7990383 COL4A2 1284 13 109909236 NM_001846 NP_001837 A/G R517K plus 24556924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "by doubleHit,freq,cluster" 13q34 "collagen, type IV, alpha 2" 31695 rs7995033 MTMR6 9107 13 24729888 NM_004685 NP_004676 C/T I319V plus 24007111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq,cluster" 13q12 myotubularin related protein 6 31696 rs7995033 MTMR6 9107 13 24729888 NM_004685 NP_004676 C/T I319V plus 24007111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 13q12 myotubularin related protein 6 31697 rs7995033 MTMR6 9107 13 24729888 NM_004685 NP_004676 C/T I319V plus 24007111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 13q12 myotubularin related protein 6 31698 rs7998427 SETDB2 83852 13 48948621 NM_031915 NP_114121 A/G E117G plus 23439415 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 13q14 "SET domain, bifurcated 2" 31699 rs7998427 SETDB2 83852 13 48948621 NM_031915 NP_114121 A/G E117G plus 23439415 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 13q14 "SET domain, bifurcated 2" 31700 rs7998427 SETDB2 83852 13 48948621 NM_031915 NP_114121 A/G E117G plus 23439415 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 13q14 "SET domain, bifurcated 2" 31701 rs8002697 LNX2 222484 13 27041229 NM_153371 NP_699202 A/G S198P plus 23966822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.3 123 "by doubleHit,freq,cluster" 13q12.2 ligand of numb-protein X 2 31702 rs8002697 LNX2 222484 13 27041229 NM_153371 NP_699202 A/G S198P plus 23966822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.35 123 "by doubleHit,freq,cluster" 13q12.2 ligand of numb-protein X 2 31703 rs8002697 LNX2 222484 13 27041229 NM_153371 NP_699202 A/G S198P plus 23966822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 13q12.2 ligand of numb-protein X 2 31704 rs8002725 SCEL 8796 13 77086079 NM_003843 NP_003834 A/G K460R plus 23369176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 13q22 sciellin 31705 rs8002725 SCEL 8796 13 77086079 NM_003843 NP_003834 A/G K460R plus 23369176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 13q22 sciellin 31706 rs8002725 SCEL 8796 13 77086079 NM_003843 NP_003834 A/G K460R plus 23369176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 13q22 sciellin 31707 rs8002725 SCEL 8796 13 77086079 NM_144777 NP_659001 A/G K480R plus 23369176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 13q22 sciellin 31708 rs8002725 SCEL 8796 13 77086079 NM_144777 NP_659001 A/G K480R plus 23369176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 13q22 sciellin 31709 rs8002725 SCEL 8796 13 77086079 NM_144777 NP_659001 A/G K480R plus 23369176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 13q22 sciellin 31710 rs8005245 OR4K17 390436 14 19655882 XM_372504 XP_372504 C/G K131N plus 24226556 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 17" 31711 rs8005245 OR4K17 390436 14 19655882 XM_372504 XP_372504 C/G K131N plus 24226556 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 17" 31712 rs8005245 OR4K17 390436 14 19655882 XM_372504 XP_372504 C/G K131N plus 24226556 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 17" 31713 rs8010699 SYNE2 23224 14 63592596 NM_015180 NP_055995 A/G H3308R plus 12284130 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31714 rs8010699 SYNE2 23224 14 63592596 NM_015180 NP_055995 A/G H3308R plus 23647994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31715 rs8010699 SYNE2 23224 14 63592596 NM_015180 NP_055995 A/G H3308R plus 23647994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31716 rs8010699 SYNE2 23224 14 63592596 NM_015180 NP_055995 A/G H3308R plus 23647994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "HapMap,doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31717 rs8010911 SYNE2 23224 14 63592427 NM_015180 NP_055995 C/G D3252H plus 23647990 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31718 rs8010911 SYNE2 23224 14 63592427 NM_015180 NP_055995 C/G D3252H plus 23647990 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31719 rs8010911 SYNE2 23224 14 63592427 NM_015180 NP_055995 C/G D3252H plus 23647990 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 31720 rs8014538 TRIP11 9321 14 91510819 NM_004239 NP_004230 C/T G1827S plus 12291419 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 123 "HapMap,doubleHit,freq,cluster" 14q31-q32 thyroid hormone receptor interactor 11 31721 rs8014538 TRIP11 9321 14 91510819 NM_004239 NP_004230 C/T G1827S plus 12291419 1303 SEQUENOM CEPH CEPH (92) 92 0.37 123 "HapMap,doubleHit,freq,cluster" 14q31-q32 thyroid hormone receptor interactor 11 31722 rs8014538 TRIP11 9321 14 91510819 NM_004239 NP_004230 C/T G1827S plus 24599389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 14q31-q32 thyroid hormone receptor interactor 11 31723 rs8014538 TRIP11 9321 14 91510819 NM_004239 NP_004230 C/T G1827S plus 24599389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 14q31-q32 thyroid hormone receptor interactor 11 31724 rs8014538 TRIP11 9321 14 91510819 NM_004239 NP_004230 C/T G1827S plus 24599389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 14q31-q32 thyroid hormone receptor interactor 11 31725 rs8018720 SEC23A 10484 14 38625936 NM_006364 NP_006355 C/G L211V plus 12299296 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 14q13.3 Sec23 homolog A (S. cerevisiae) 31726 rs8018720 SEC23A 10484 14 38625936 NM_006364 NP_006355 C/G L211V plus 24118853 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 14q13.3 Sec23 homolog A (S. cerevisiae) 31727 rs8018720 SEC23A 10484 14 38625936 NM_006364 NP_006355 C/G L211V plus 24118853 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 14q13.3 Sec23 homolog A (S. cerevisiae) 31728 rs8018720 SEC23A 10484 14 38625936 NM_006364 NP_006355 C/G L211V plus 24118853 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 14q13.3 Sec23 homolog A (S. cerevisiae) 31729 rs8019076 SYT14L 83851 14 61532519 NM_031914 NP_114120 C/T V10A plus 24599754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 14q23.1-q23.2 synaptotagmin XIV-like 31730 rs8019076 SYT14L 83851 14 61532519 NM_031914 NP_114120 C/T V10A plus 24599754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 14q23.1-q23.2 synaptotagmin XIV-like 31731 rs8019076 SYT14L 83851 14 61532519 NM_031914 NP_114120 C/T V10A plus 24599754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 14q23.1-q23.2 synaptotagmin XIV-like 31732 rs8024732 GANC 2595 15 40358010 NM_198141 NP_937784 A/G Q44R plus 12310524 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.1 123 "HapMap,doubleHit,freq,cluster" 15q15.2 "glucosidase, alpha; neutral C" 31733 rs8024732 GANC 2595 15 40358010 NM_198141 NP_937784 A/G Q44R plus 23365504 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 15q15.2 "glucosidase, alpha; neutral C" 31734 rs8024732 GANC 2595 15 40358010 NM_198141 NP_937784 A/G Q44R plus 23365504 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 15q15.2 "glucosidase, alpha; neutral C" 31735 rs8024732 GANC 2595 15 40358010 NM_198141 NP_937784 A/G Q44R plus 23365504 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 15q15.2 "glucosidase, alpha; neutral C" 31736 rs8028332 HYPK 25764 15 41881219 NM_016400 NP_057484 C/T S105P plus 12317237 1303 SEQUENOM CEPH CEPH (92) 92 0.04 116 by freq 15q15.1 Huntingtin interacting protein K 31737 rs8030587 STARD9 57519 15 40769098 XM_031744 XP_031744 A/G R2681H plus 12321528 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 123 "HapMap,doubleHit,freq,cluster" 15q14 START domain containing 9 31738 rs8030587 STARD9 57519 15 40769098 XM_031744 XP_031744 A/G R2681H plus 23368386 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 15q14 START domain containing 9 31739 rs8030587 STARD9 57519 15 40769098 XM_031744 XP_031744 A/G R2681H plus 23368386 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 15q14 START domain containing 9 31740 rs8030587 STARD9 57519 15 40769098 XM_031744 XP_031744 A/G R2681H plus 23368386 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 15q14 START domain containing 9 31741 rs8032410 IREB2 3658 15 76570028 NM_004136 NP_004127 A/G I732V plus 12324936 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q24.1 iron-responsive element binding protein 2 31742 rs8034735 SPTBN5 51332 15 39949449 NM_016642 NP_057726 C/T H1912R plus 12329450 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 15q21 "spectrin, beta, non-erythrocytic 5" 31743 rs8040502 AF15Q14 57082 15 38702482 NM_020380 NP_065113 A/G R910G plus 12340246 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31744 rs8040502 AF15Q14 57082 15 38702482 NM_020380 NP_065113 A/G R910G plus 24037148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31745 rs8040502 AF15Q14 57082 15 38702482 NM_020380 NP_065113 A/G R910G plus 24037148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31746 rs8040502 AF15Q14 57082 15 38702482 NM_020380 NP_065113 A/G R910G plus 24037148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31747 rs8040502 AF15Q14 57082 15 38702482 NM_144508 NP_653091 A/G R910G plus 12340246 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31748 rs8040502 AF15Q14 57082 15 38702482 NM_144508 NP_653091 A/G R910G plus 24037148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31749 rs8040502 AF15Q14 57082 15 38702482 NM_144508 NP_653091 A/G R910G plus 24037148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31750 rs8040502 AF15Q14 57082 15 38702482 NM_144508 NP_653091 A/G R910G plus 24037148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31751 rs8040502 AF15Q14 57082 15 38702482 NM_170589 NP_733468 A/G R936G plus 12340246 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31752 rs8040502 AF15Q14 57082 15 38702482 NM_170589 NP_733468 A/G R936G plus 24037148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31753 rs8040502 AF15Q14 57082 15 38702482 NM_170589 NP_733468 A/G R936G plus 24037148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31754 rs8040502 AF15Q14 57082 15 38702482 NM_170589 NP_733468 A/G R936G plus 24037148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,freq,cluster" 15q14 AF15q14 protein 31755 rs8042868 CATSPER2 117155 15 41726934 NM_054020 NP_473361 C/T V57I plus 12344628 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 "HapMap,doubleHit,cluster" 15q14 "cation channel, sperm associated 2" 31756 rs8042868 CATSPER2 117155 15 41726934 NM_172095 NP_742093 C/T V57I plus 12344628 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 "HapMap,doubleHit,cluster" 15q14 "cation channel, sperm associated 2" 31757 rs8042868 CATSPER2 117155 15 41726934 NM_172096 NP_742094 C/T V57I plus 12344628 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 "HapMap,doubleHit,cluster" 15q14 "cation channel, sperm associated 2" 31758 rs8042868 CATSPER2 117155 15 41726934 NM_172097 NP_742095 C/T V57I plus 12344628 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 "HapMap,doubleHit,cluster" 15q14 "cation channel, sperm associated 2" 31759 rs8042919 TRPM7 54822 15 48665922 NM_017672 NP_060142 A/G T1482I plus 24665830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 15q21 "transient receptor potential cation channel, subfamily M, member 7" 31760 rs8042919 TRPM7 54822 15 48665922 NM_017672 NP_060142 A/G T1482I plus 24665830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 15q21 "transient receptor potential cation channel, subfamily M, member 7" 31761 rs8042919 TRPM7 54822 15 48665922 NM_017672 NP_060142 A/G T1482I plus 24665830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 15q21 "transient receptor potential cation channel, subfamily M, member 7" 31762 rs8044440 ATBF1 463 16 71379415 NM_006885 NP_008816 C/G P3421A plus 12347604 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 HapMap 16q22.3-q23.1 AT-binding transcription factor 1 31763 rs8048992 UQCRC2 7385 16 21881635 NM_003366 NP_003357 A/C R148S plus 12356071 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,cluster" 16p12 ubiquinol-cytochrome c reductase core protein II 31764 rs8050758 ZNF629 23361 16 30701031 XM_034819 XP_034819 C/G P894A plus 12359258 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16p11.2 zinc finger protein 629 31765 rs8050871 ZNF19 7567 16 70067297 NM_006961 NP_008892 C/G Q218H plus 23414322 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 16q22 zinc finger protein 19 (KOX 12) 31766 rs8050871 ZNF19 7567 16 70067297 NM_006961 NP_008892 C/G Q218H plus 23414322 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 16q22 zinc finger protein 19 (KOX 12) 31767 rs8050871 ZNF19 7567 16 70067297 NM_006961 NP_008892 C/G Q218H plus 23414322 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 16q22 zinc finger protein 19 (KOX 12) 31768 rs8052579 GCSH 2653 16 79687323 NM_004483 NP_004474 A/G S21L plus 9805837 693 EGP_SNPS PDR90 NIHPDR 134 0.16 121 "by doubleHit,freq,cluster" 16q23.2 glycine cleavage system protein H (aminomethyl carrier) 31769 rs8052713 TBL3 10607 16 1965605 NM_006453 NP_006444 C/G E294Q plus 12362931 1303 SEQUENOM CEPH CEPH (92) 92 1 120 "by doubleHit,cluster" 16p13.3 transducin (beta)-like 3 31770 rs8053883 COG4 25839 16 69100222 NM_145818 NP_665817 C/T V333I plus 12365136 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 16q22.1 component of oligomeric golgi complex 4 31771 rs8056684 CIRH1A 84916 16 67748513 NM_032830 NP_116219 A/G R438H plus 12370181 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16q22.1 "cirrhosis, autosomal recessive 1A (cirhin)" 31772 rs8056709 BUCS1 116285 16 20544338 NM_052956 NP_443188 C/T I479V plus 23362563 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.11 butyryl Coenzyme A synthetase 1 31773 rs8056709 BUCS1 116285 16 20544338 NM_052956 NP_443188 C/T I479V plus 23362563 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 16p13.11 butyryl Coenzyme A synthetase 1 31774 rs8056709 BUCS1 116285 16 20544338 NM_052956 NP_443188 C/T I479V plus 23362563 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.11 butyryl Coenzyme A synthetase 1 31775 rs8057474 ABCC12 94160 16 46695773 NM_033226 NP_150229 A/T K894M plus 12371648 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 116 HapMap 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 31776 rs8057474 ABCC12 94160 16 46695773 NM_145187 NP_660188 A/T K891M plus 12371648 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 116 HapMap 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 31777 rs8057474 ABCC12 94160 16 46695773 NM_145189 NP_660190 A/T K891M plus 12371648 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 116 HapMap 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 31778 rs8057474 ABCC12 94160 16 46695773 NM_145190 NP_660191 A/T K891M plus 12371648 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 116 HapMap 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 31779 rs8058231 UNKL 64718 16 1385679 NM_024023 NP_076928 A/C G433X plus 12373026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 16p13.3 unkempt-like (Drosophila) 31780 rs8060130 TMC5 79838 16 19390951 NM_024780 NP_079056 C/T T362M plus 12376502 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 16p13.11 transmembrane channel-like 5 31781 rs8065506 ZNF624 57547 17 16468520 NM_020787 NP_065838 A/C K135N plus 12386386 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.28 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 624 31782 rs8065506 ZNF624 57547 17 16468520 NM_020787 NP_065838 A/C K135N plus 24008833 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 624 31783 rs8065506 ZNF624 57547 17 16468520 NM_020787 NP_065838 A/C K135N plus 24008833 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 624 31784 rs8065506 ZNF624 57547 17 16468520 NM_020787 NP_065838 A/C K135N plus 24008833 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 17p11.2 zinc finger protein 624 31785 rs8068664 GALGT2 124872 17 44596513 NM_153446 NP_703147 A/G M337I plus 12391888 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 17q21.33 "UDP-GalNAc:Neu5Acalpha2-3Galbeta-R beta1,4-N-acetylgalactosaminyltransferase" 31786 rs8069315 DHX33 56919 17 5307671 NM_020162 NP_064547 A/G R118C plus 23625827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by doubleHit,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 31787 rs8069315 DHX33 56919 17 5307671 NM_020162 NP_064547 A/G R118C plus 23625827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 31788 rs8069315 DHX33 56919 17 5307671 NM_020162 NP_064547 A/G R118C plus 23625827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by doubleHit,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 31789 rs8069344 GUCY2D 3000 17 7858004 NM_000180 NP_000171 A/T L782H plus 12393066 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 116 "HapMap,doubleHit,freq" 17p13.1 "guanylate cyclase 2D, membrane (retina-specific)" 31790 rs8069834 MYH8 4626 17 10238383 NM_002472 NP_002463 A/G W1692R plus 14302920 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,freq,cluster" 17p13.1 "myosin, heavy polypeptide 8, skeletal muscle, perinatal" 31791 rs8074498 ASPSCR1 79058 17 77547833 NM_024083 NP_076988 A/T L252Q plus 12402152 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 120 "HapMap,freq,cluster" 17q25 "alveolar soft part sarcoma chromosome region, candidate 1" 31792 rs8074656 DNAH9 1770 17 11813492 NM_001372 NP_001363 C/T W4462R plus 23604716 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31793 rs8074656 DNAH9 1770 17 11813492 NM_001372 NP_001363 C/T W4462R plus 23604716 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31794 rs8074656 DNAH9 1770 17 11813492 NM_001372 NP_001363 C/T W4462R plus 23604716 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31795 rs8074656 DNAH9 1770 17 11813492 NM_004662 NP_004653 C/T W774R plus 23604716 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31796 rs8074656 DNAH9 1770 17 11813492 NM_004662 NP_004653 C/T W774R plus 23604716 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31797 rs8074656 DNAH9 1770 17 11813492 NM_004662 NP_004653 C/T W774R plus 23604716 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p12 "dynein, axonemal, heavy polypeptide 9" 31798 rs8077302 COX10 1352 17 13921075 NM_001303 NP_001294 A/G R159Q plus 12407037 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 31799 rs8077302 COX10 1352 17 13921075 NM_001303 NP_001294 A/G R159Q plus 23618057 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "HapMap,doubleHit,freq,cluster" 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 31800 rs8077302 COX10 1352 17 13921075 NM_001303 NP_001294 A/G R159Q plus 23618057 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "HapMap,doubleHit,freq,cluster" 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 31801 rs8077302 COX10 1352 17 13921075 NM_001303 NP_001294 A/G R159Q plus 23618057 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 31802 rs8077382 SIAT7A 55808 17 72137281 NM_018414 NP_060884 A/G V80A plus 12407180 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 116 "HapMap,doubleHit,freq" 17q25.3 "sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) A" 31803 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 12411961 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.16 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31804 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 14911206 901 AFFY AfAm 5 0.5 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31805 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 14911206 902 AFFY Caucasian 22 0.05 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31806 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 14911206 903 AFFY Asian 12 0.08 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31807 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 14911206 904 AFFY CEPH 12 1 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31808 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 14911206 905 AFFY PDpanel 46 0.17 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31809 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 23627554 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31810 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 23627554 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31811 rs8080100 HELZ 9931 17 62642504 XM_375485 XP_375485 C/T V74M plus 23627554 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,freq,cluster" 17q24.3 helicase with zinc finger domain 31812 rs8082898 EPB41L3 23136 18 5406160 NM_012307 NP_036439 C/T Y575C plus 24546024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 18p11.32 erythrocyte membrane protein band 4.1-like 3 31813 rs8082898 EPB41L3 23136 18 5406160 NM_012307 NP_036439 C/T Y575C plus 24546024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 18p11.32 erythrocyte membrane protein band 4.1-like 3 31814 rs8082898 EPB41L3 23136 18 5406160 NM_012307 NP_036439 C/T Y575C plus 24546024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 18p11.32 erythrocyte membrane protein band 4.1-like 3 31815 rs8084295 METTL4 64863 18 2529016 NM_022840 NP_073751 C/G V468L plus 23465074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 18p11.31 methyltransferase like 4 31816 rs8084295 METTL4 64863 18 2529016 NM_022840 NP_073751 C/G V468L plus 23465074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 18p11.31 methyltransferase like 4 31817 rs8084295 METTL4 64863 18 2529016 NM_022840 NP_073751 C/G V468L plus 23465074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18p11.31 methyltransferase like 4 31818 rs8091003 DSG1 1828 18 27173777 NM_001942 NP_001933 A/C N493T plus 23766610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31819 rs8091003 DSG1 1828 18 27173777 NM_001942 NP_001933 A/C N493T plus 23766610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31820 rs8091003 DSG1 1828 18 27173777 NM_001942 NP_001933 A/C N493T plus 23766610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31821 rs8091117 DSG1 1828 18 27173792 NM_001942 NP_001933 A/C T498N plus 23766614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31822 rs8091117 DSG1 1828 18 27173792 NM_001942 NP_001933 A/C T498N plus 23766614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31823 rs8091117 DSG1 1828 18 27173792 NM_001942 NP_001933 A/C T498N plus 23766614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q12.1 desmoglein 1 31824 rs8093472 ZNF516 9658 18 72274019 XM_496278 XP_496278 C/T N810S plus 23554423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 18q23 zinc finger protein 516 31825 rs8093472 ZNF516 9658 18 72274019 XM_496278 XP_496278 C/T N810S plus 23554423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 18q23 zinc finger protein 516 31826 rs8093472 ZNF516 9658 18 72274019 XM_496278 XP_496278 C/T N810S plus 23554423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 18q23 zinc finger protein 516 31827 rs8096452 EPB41L3 23136 18 5387323 NM_012307 NP_036439 C/G E859Q plus 23456079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by doubleHit,cluster" 18p11.32 erythrocyte membrane protein band 4.1-like 3 31828 rs8096452 EPB41L3 23136 18 5387323 NM_012307 NP_036439 C/G E859Q plus 23456079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,cluster" 18p11.32 erythrocyte membrane protein band 4.1-like 3 31829 rs8096452 EPB41L3 23136 18 5387323 NM_012307 NP_036439 C/G E859Q plus 23456079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,cluster" 18p11.32 erythrocyte membrane protein band 4.1-like 3 31830 rs8097425 SERPINB10 5273 18 59733847 NM_005024 NP_005015 A/G I41M plus 24058571 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 31831 rs8097425 SERPINB10 5273 18 59733847 NM_005024 NP_005015 A/G I41M plus 24058571 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 31832 rs8097425 SERPINB10 5273 18 59733847 NM_005024 NP_005015 A/G I41M plus 24058571 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 31833 rs8098850 COLEC12 81035 18 325099 NM_030781 NP_110408 C/T I487V plus 23451519 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31834 rs8098850 COLEC12 81035 18 325099 NM_030781 NP_110408 C/T I487V plus 23451519 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31835 rs8098850 COLEC12 81035 18 325099 NM_030781 NP_110408 C/T I487V plus 23451519 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31836 rs8098850 COLEC12 81035 18 325099 NM_130386 NP_569057 C/T I487V plus 23451519 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31837 rs8098850 COLEC12 81035 18 325099 NM_130386 NP_569057 C/T I487V plus 23451519 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31838 rs8098850 COLEC12 81035 18 325099 NM_130386 NP_569057 C/T I487V plus 23451519 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18pter-p11.3 collectin sub-family member 12 31839 rs8100856 ATP8B3 148229 19 1747166 NM_138813 NP_620168 C/T V618I plus 12451295 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31840 rs8100856 ATP8B3 148229 19 1747166 NM_138813 NP_620168 C/T V618I plus 24123665 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 "HapMap,doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31841 rs8100856 ATP8B3 148229 19 1747166 NM_138813 NP_620168 C/T V618I plus 24123665 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 "HapMap,doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31842 rs8100856 ATP8B3 148229 19 1747166 NM_138813 NP_620168 C/T V618I plus 24123665 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "HapMap,doubleHit,freq,cluster" 19p13.3 "ATPase, Class I, type 8B, member 3" 31843 rs8102488 CEACAM7 1087 19 46882699 NM_006890 NP_008821 A/T F120I plus 23988173 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 31844 rs8102488 CEACAM7 1087 19 46882699 NM_006890 NP_008821 A/T F120I plus 23988173 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 31845 rs8102488 CEACAM7 1087 19 46882699 NM_006890 NP_008821 A/T F120I plus 23988173 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 23 0.5 123 "by doubleHit,freq,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 31846 rs8102646 EMR3 84658 19 14613325 NM_032571 NP_115960 C/T R385Q plus 12454447 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 119 "HapMap,doubleHit,freq,cluster" 19p13.1 "egf-like module containing, mucin-like, hormone receptor-like 3" 31847 rs8103051 CEACAM8 1088 19 47779268 NM_001816 NP_001807 A/C I340M plus 12455170 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 8 31848 rs8104843 OR1I1 126370 19 15059292 XM_065050 XP_065050 C/G P139R plus 12458336 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 121 "HapMap,doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 31849 rs8104890 ZNF614 80110 19 57211420 NM_025040 NP_079316 C/T V415I plus 12458406 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.24 123 "HapMap,doubleHit,freq" 19q13.41 zinc finger protein 614 31850 rs8104890 ZNF614 80110 19 57211420 NM_025040 NP_079316 C/T V415I plus 24199238 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 "HapMap,doubleHit,freq" 19q13.41 zinc finger protein 614 31851 rs8104890 ZNF614 80110 19 57211420 NM_025040 NP_079316 C/T V415I plus 24199238 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq" 19q13.41 zinc finger protein 614 31852 rs8104890 ZNF614 80110 19 57211420 NM_025040 NP_079316 C/T V415I plus 24199238 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "HapMap,doubleHit,freq" 19q13.41 zinc finger protein 614 31853 rs8105668 ZNF160 90338 19 58269231 NM_033288 NP_150630 C/G P82R plus 24074423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31854 rs8105668 ZNF160 90338 19 58269231 NM_033288 NP_150630 C/G P82R plus 24074423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31855 rs8105668 ZNF160 90338 19 58269231 NM_033288 NP_150630 C/G P82R plus 24074423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31856 rs8105668 ZNF160 90338 19 58269231 NM_198893 NP_942596 C/G P82R plus 24074423 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31857 rs8105668 ZNF160 90338 19 58269231 NM_198893 NP_942596 C/G P82R plus 24074423 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31858 rs8105668 ZNF160 90338 19 58269231 NM_198893 NP_942596 C/G P82R plus 24074423 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 19q13.42 zinc finger protein 160 31859 rs8105737 OR1I1 126370 19 15059631 XM_065050 XP_065050 A/C Y252S plus 23405734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 31860 rs8105737 OR1I1 126370 19 15059631 XM_065050 XP_065050 A/C Y252S plus 23405734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 31861 rs8105737 OR1I1 126370 19 15059631 XM_065050 XP_065050 A/C Y252S plus 23405734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 31862 rs8107859 BCNP1 199786 19 17509350 NM_173544 NP_775815 C/T I229T plus 16804825 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 121 "HapMap,freq,cluster" 19p13.12 B-cell novel protein 1 31863 rs8108188 SLC5A5 6528 19 17849825 NM_000453 NP_000444 G/T C298G plus 12464231 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit" 19p13.2-p12 "solute carrier family 5 (sodium iodide symporter), member 5" 31864 rs8108981 PBX4 80714 19 19542021 NM_025245 NP_079521 C/T M177V plus 12465681 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 19p12 pre-B-cell leukemia transcription factor 4 31865 rs8110220 DHRS10 51171 19 54030910 NM_016246 NP_057330 C/T N31D plus 23812929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.34 123 "by doubleHit,freq,cluster" 19q13.33 dehydrogenase/reductase (SDR family) member 10 31866 rs8110220 DHRS10 51171 19 54030910 NM_016246 NP_057330 C/T N31D plus 23812929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 19q13.33 dehydrogenase/reductase (SDR family) member 10 31867 rs8110220 DHRS10 51171 19 54030910 NM_016246 NP_057330 C/T N31D plus 23812929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 "by doubleHit,freq,cluster" 19q13.33 dehydrogenase/reductase (SDR family) member 10 31868 rs8110904 CEACAM1 634 19 47723209 NM_001712 NP_001703 A/G A83V plus 12469171 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 123 "HapMap,doubleHit,cluster" 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 31869 rs8112407 ZIM2 23619 19 61978229 NM_015363 NP_056178 C/T Q408R plus 12471835 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 HapMap 19q13.4 "zinc finger, imprinted 2" 31870 rs8112811 TULP2 7288 19 54083216 NM_003323 NP_003314 C/T D251N plus 23812940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 19q13.1 tubby like protein 2 31871 rs8112811 TULP2 7288 19 54083216 NM_003323 NP_003314 C/T D251N plus 23812940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19q13.1 tubby like protein 2 31872 rs8112811 TULP2 7288 19 54083216 NM_003323 NP_003314 C/T D251N plus 23812940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 19q13.1 tubby like protein 2 31873 rs8113645 PLAC2 257000 19 5512076 NM_153375 NP_699206 A/G F105L plus 24531759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 19p13.3 placenta-specific 2 31874 rs8113645 PLAC2 257000 19 5512076 NM_153375 NP_699206 A/G F105L plus 24531759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 19p13.3 placenta-specific 2 31875 rs8113645 PLAC2 257000 19 5512076 NM_153375 NP_699206 A/G F105L plus 24531759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 19p13.3 placenta-specific 2 31876 rs8113704 TA-NFKBH 84807 19 41079721 NM_139239 NP_640332 A/G V29A plus 12474213 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.02 123 "HapMap,doubleHit,freq,cluster" 19q13.13 T-cell activation NFKB-like protein 31877 rs8113704 TA-NFKBH 84807 19 41079721 NM_139239 NP_640332 A/G V29A plus 23613383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 19q13.13 T-cell activation NFKB-like protein 31878 rs8113704 TA-NFKBH 84807 19 41079721 NM_139239 NP_640332 A/G V29A plus 23613383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "HapMap,doubleHit,freq,cluster" 19q13.13 T-cell activation NFKB-like protein 31879 rs8113704 TA-NFKBH 84807 19 41079721 NM_139239 NP_640332 A/G V29A plus 23613383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 19q13.13 T-cell activation NFKB-like protein 31880 rs8118712 SPAG4L 140732 20 31054347 NM_080675 NP_542406 A/C E39D plus 12484154 1303 SEQUENOM CEPH CEPH (92) 92 0.25 116 by freq 20q11.21 sperm associated antigen 4-like 31881 rs8128440 NDUFV3 4731 21 43197434 NM_021075 NP_066553 A/G D398N plus 12504022 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.32 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa" 31882 rs8128440 NDUFV3 4731 21 43197434 NM_021075 NP_066553 A/G D398N plus 24605489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.41 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa" 31883 rs8128440 NDUFV3 4731 21 43197434 NM_021075 NP_066553 A/G D398N plus 24605489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa" 31884 rs8128440 NDUFV3 4731 21 43197434 NM_021075 NP_066553 A/G D398N plus 24605489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 21q22.3 "NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa" 31885 rs8131693 PCNT2 5116 21 46674535 NM_006031 NP_006022 A/G R2625Q plus 12511373 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 116 "HapMap,doubleHit" 21q22.3 pericentrin 2 (kendrin) 31886 rs8133052 CBR3 874 21 36429371 NM_001236 NP_001227 A/G C4Y plus 24219547 1371 PERLEGEN AFD_EUR_PANEL European American (24) 36 0.36 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 31887 rs8133052 CBR3 874 21 36429371 NM_001236 NP_001227 A/G C4Y plus 24219547 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 31888 rs8133052 CBR3 874 21 36429371 NM_001236 NP_001227 A/G C4Y plus 24219547 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.48 123 "by doubleHit,freq,cluster" 21q22.2 carbonyl reductase 3 31889 rs8138516 DEPDC5 9681 22 30535558 XM_376007 XP_376007 C/G S491T plus 12525650 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 22q12.3 DEP domain containing 5 31890 rs8138516 DEPDC5 9681 22 30535558 XM_376007 XP_376007 C/G S491T plus 23791074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 22q12.3 DEP domain containing 5 31891 rs8138516 DEPDC5 9681 22 30535558 XM_376007 XP_376007 C/G S491T plus 23791074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 22q12.3 DEP domain containing 5 31892 rs8138516 DEPDC5 9681 22 30535558 XM_376007 XP_376007 C/G S491T plus 23791074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 22q12.3 DEP domain containing 5 31893 rs8139305 SCO2 9997 22 49252209 NM_005138 NP_005129 A/G A259V plus 12527215 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 31894 rs8139305 SCO2 9997 22 49252209 NM_005138 NP_005129 A/G A259V plus 23795527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 31895 rs8139305 SCO2 9997 22 49252209 NM_005138 NP_005129 A/G A259V plus 23795527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,doubleHit,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 31896 rs8139305 SCO2 9997 22 49252209 NM_005138 NP_005129 A/G A259V plus 23795527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,doubleHit,cluster" 22q13.33 SCO cytochrome oxidase deficient homolog 2 (yeast) 31897 rs8140743 STK22B 23617 22 17494199 NM_053006 NP_443732 A/T C245S plus 12530121 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 116 "HapMap,doubleHit" 22q11.21 serine/threonine kinase 22B (spermiogenesis associated) 31898 rs8141262 CACNA1I 8911 22 38391458 NM_021096 NP_066919 C/T T1513M plus 23563822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 22q13.1 "calcium channel, voltage-dependent, alpha 1I subunit" 31899 rs8141262 CACNA1I 8911 22 38391458 NM_021096 NP_066919 C/T T1513M plus 23563822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 22q13.1 "calcium channel, voltage-dependent, alpha 1I subunit" 31900 rs8141262 CACNA1I 8911 22 38391458 NM_021096 NP_066919 C/T T1513M plus 23563822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q13.1 "calcium channel, voltage-dependent, alpha 1I subunit" 31901 rs8141797 SUSD2 56241 22 22906595 NM_019601 NP_062547 A/G N466S plus 12532243 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 22q11-q12 sushi domain containing 2 31902 rs8141797 SUSD2 56241 22 22906595 NM_019601 NP_062547 A/G N466S plus 23610155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "HapMap,doubleHit,freq,cluster" 22q11-q12 sushi domain containing 2 31903 rs8141797 SUSD2 56241 22 22906595 NM_019601 NP_062547 A/G N466S plus 23610155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "HapMap,doubleHit,freq,cluster" 22q11-q12 sushi domain containing 2 31904 rs8141797 SUSD2 56241 22 22906595 NM_019601 NP_062547 A/G N466S plus 23610155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 22q11-q12 sushi domain containing 2 31905 rs8142477 CPT1B 1375 22 49301520 NM_004377 NP_004368 C/G S427C plus 12533653 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31906 rs8142477 CPT1B 1375 22 49301520 NM_004377 NP_004368 C/G S427C plus 24214955 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31907 rs8142477 CPT1B 1375 22 49301520 NM_004377 NP_004368 C/G S427C plus 24214955 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31908 rs8142477 CPT1B 1375 22 49301520 NM_004377 NP_004368 C/G S427C plus 24214955 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31909 rs8142477 CPT1B 1375 22 49301520 NM_152245 NP_689451 C/G S427C plus 12533653 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31910 rs8142477 CPT1B 1375 22 49301520 NM_152245 NP_689451 C/G S427C plus 24214955 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31911 rs8142477 CPT1B 1375 22 49301520 NM_152245 NP_689451 C/G S427C plus 24214955 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31912 rs8142477 CPT1B 1375 22 49301520 NM_152245 NP_689451 C/G S427C plus 24214955 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31913 rs8142477 CPT1B 1375 22 49301520 NM_152246 NP_689452 C/G S427C plus 12533653 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31914 rs8142477 CPT1B 1375 22 49301520 NM_152246 NP_689452 C/G S427C plus 24214955 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31915 rs8142477 CPT1B 1375 22 49301520 NM_152246 NP_689452 C/G S427C plus 24214955 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31916 rs8142477 CPT1B 1375 22 49301520 NM_152246 NP_689452 C/G S427C plus 24214955 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq" 22q13.33 carnitine palmitoyltransferase 1B (muscle) 31917 rs8142477 CHKB-CPT1B 386593 22 49301520 NM_152247 NP_689453 C/G S427C plus 12533653 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 31918 rs8142477 CHKB-CPT1B 386593 22 49301520 NM_152247 NP_689453 C/G S427C plus 24214955 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,doubleHit,freq" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 31919 rs8142477 CHKB-CPT1B 386593 22 49301520 NM_152247 NP_689453 C/G S427C plus 24214955 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "HapMap,doubleHit,freq" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 31920 rs8142477 CHKB-CPT1B 386593 22 49301520 NM_152247 NP_689453 C/G S427C plus 24214955 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "HapMap,doubleHit,freq" 22q13.33 "choline kinase-like, carnitine palmitoyltransferase 1B (muscle) transcription unit" 31921 rs8176038 KEL 3792 7 142156950 NM_000420 NP_000411 C/T L597P minus 6904372 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 117 by freq 7q33 Kell blood group 31922 rs8176344 CYP27B1 1594 12 56445440 NM_000785 NP_000776 C/G V166L minus 8486489 693 EGP_SNPS PDR90 NIHPDR 160 0.02 117 by freq 12q13.1-q13.3 "cytochrome P450, family 27, subfamily B, polypeptide 1" 31923 rs8176393 TNFAIP2 7127 14 102669600 NM_006291 NP_006282 C/T T565I plus 8486570 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.11 117 by freq 14q32 "tumor necrosis factor, alpha-induced protein 2" 31924 rs8176785 NELL1 4745 11 20761862 NM_006157 NP_006148 A/G R82Q plus 8487070 835 SBOYD Craniosynostosis 40 0.08 121 "by doubleHit,freq,cluster" 11p15.2-p15.1 NEL-like 1 (chicken) 31925 rs8176786 NELL1 4745 11 20915970 NM_006157 NP_006148 C/T R354W plus 8487075 835 SBOYD Craniosynostosis 40 0.05 123 "by cluster,freq" 11p15.2-p15.1 NEL-like 1 (chicken) 31926 rs8176786 NELL1 4745 11 20915970 NM_006157 NP_006148 C/T R354W plus 24148029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11p15.2-p15.1 NEL-like 1 (chicken) 31927 rs8176786 NELL1 4745 11 20915970 NM_006157 NP_006148 C/T R354W plus 24148029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 11p15.2-p15.1 NEL-like 1 (chicken) 31928 rs8176786 NELL1 4745 11 20915970 NM_006157 NP_006148 C/T R354W plus 24148029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 11p15.2-p15.1 NEL-like 1 (chicken) 31929 rs8176919 DNASE1 1773 16 3646698 NM_005223 NP_005214 A/G G127R plus 8819934 506 NCBI NIHPDR NIHPDR 154 0.01 123 "by cluster,freq" 16p13.3 deoxyribonuclease I 31930 rs8176919 DNASE1 1773 16 3646698 NM_005223 NP_005214 A/G G127R plus 8819934 720 UWGC LupusClinical 160 0.01 123 "by cluster,freq" 16p13.3 deoxyribonuclease I 31931 rs8176919 DNASE1 1773 16 3646698 NM_005223 NP_005214 A/G G127R plus 23798686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p13.3 deoxyribonuclease I 31932 rs8176919 DNASE1 1773 16 3646698 NM_005223 NP_005214 A/G G127R plus 23798686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 16p13.3 deoxyribonuclease I 31933 rs8176919 DNASE1 1773 16 3646698 NM_005223 NP_005214 A/G G127R plus 23798686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p13.3 deoxyribonuclease I 31934 rs8176927 DNASE1 1773 16 3645381 NM_005223 NP_005214 G/T R2S plus 8819942 506 NCBI NIHPDR NIHPDR 178 0.04 120 "HapMap,freq,cluster" 16p13.3 deoxyribonuclease I 31935 rs8176927 DNASE1 1773 16 3645381 NM_005223 NP_005214 G/T R2S plus 8819942 720 UWGC LupusClinical 174 0.03 120 "HapMap,freq,cluster" 16p13.3 deoxyribonuclease I 31936 rs8176927 DNASE1 1773 16 3645381 NM_005223 NP_005214 G/T R2S plus 8819942 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,freq,cluster" 16p13.3 deoxyribonuclease I 31937 rs8177146 EPHB6 2051 7 142080090 NM_004445 NP_004436 G/T S309A plus 8820227 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 40 0.08 117 by freq 7q33-q35 EphB6 31938 rs8177238 TF 7018 3 134959327 NM_001063 NP_001054 A/G D296G plus 8820350 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 117 by freq 3q22.1 transferrin 31939 rs8177374 TIRAP 114609 11 125668053 NM_052887 NP_443119 C/T S180L plus 8820533 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 117 by freq 11q24.2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein 31940 rs8177374 TIRAP 114609 11 125668053 NM_052887 NP_443119 C/T S180L plus 8820533 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 117 by freq 11q24.2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein 31941 rs8177374 TIRAP 114609 11 125668053 NM_148910 NP_683708 C/T S180L plus 8820533 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 117 by freq 11q24.2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein 31942 rs8177374 TIRAP 114609 11 125668053 NM_148910 NP_683708 C/T S180L plus 8820533 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 117 by freq 11q24.2 toll-interleukin 1 receptor (TIR) domain containing adaptor protein 31943 rs8177507 SLC22A2 6582 6 160648080 NM_003058 NP_003049 A/G M165I minus 8820713 869 PHARMGKB_PMT PA128164248 488 0.01 117 by freq 6q26 "solute carrier family 22 (organic cation transporter), member 2" 31944 rs8177507 SLC22A2 6582 6 160648080 NM_153191 NP_694861 A/G M165I minus 8820713 869 PHARMGKB_PMT PA128164248 488 0.01 117 by freq 6q26 "solute carrier family 22 (organic cation transporter), member 2" 31945 rs8177513 SLC22A2 6582 6 160638694 NM_003058 NP_003049 C/G A297G minus 8820721 869 PHARMGKB_PMT PA128164248 492 0.01 117 by freq 6q26 "solute carrier family 22 (organic cation transporter), member 2" 31946 rs8177513 SLC22A2 6582 6 160638694 NM_153191 NP_694861 C/G A297G minus 8820721 869 PHARMGKB_PMT PA128164248 492 0.01 117 by freq 6q26 "solute carrier family 22 (organic cation transporter), member 2" 31947 rs8177536 POMT2 29954 14 76856617 NM_013382 NP_037514 G/T A54E plus 8829987 693 EGP_SNPS PDR90 NIHPDR 132 0.02 117 by freq 14q24 protein-O-mannosyltransferase 2 31948 rs8177832 APOBEC3G 60489 22 37802066 NM_021822 NP_068594 A/G H186R plus 9805820 854 ATELENTI healthy swiss blood donors 95 0.06 120 "by doubleHit,freq,cluster" 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G" 31949 rs8177877 GCSH 2653 16 79681717 NM_004483 NP_004474 A/G N73S minus 9805871 693 EGP_SNPS PDR90 NIHPDR 172 0.02 117 by freq 16q23.2 glycine cleavage system protein H (aminomethyl carrier) 31950 rs8178318 LPO 4025 17 53679987 NM_006151 NP_006142 C/T T105I plus 9806368 693 EGP_SNPS PDR90 NIHPDR 176 0.03 123 "by cluster,freq" 17q23.1 lactoperoxidase 31951 rs8178318 LPO 4025 17 53679987 NM_006151 NP_006142 C/T T105I plus 23791777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q23.1 lactoperoxidase 31952 rs8178318 LPO 4025 17 53679987 NM_006151 NP_006142 C/T T105I plus 23791777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 17q23.1 lactoperoxidase 31953 rs8178318 LPO 4025 17 53679987 NM_006151 NP_006142 C/T T105I plus 23791777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q23.1 lactoperoxidase 31954 rs8178338 LPO 4025 17 53682931 NM_006151 NP_006142 A/G A244T plus 9806390 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 by freq 17q23.1 lactoperoxidase 31955 rs8178338 LPO 4025 17 53682931 NM_006151 NP_006142 A/G A244T plus 24212847 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q23.1 lactoperoxidase 31956 rs8178338 LPO 4025 17 53682931 NM_006151 NP_006142 A/G A244T plus 24212847 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q23.1 lactoperoxidase 31957 rs8178338 LPO 4025 17 53682931 NM_006151 NP_006142 A/G A244T plus 24212847 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q23.1 lactoperoxidase 31958 rs8178733 PLAT 5327 8 42168061 NM_000930 NP_000921 A/C A34D minus 9806884 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31959 rs8178733 PLAT 5327 8 42168061 NM_000930 NP_000921 A/C A34D minus 23478996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31960 rs8178733 PLAT 5327 8 42168061 NM_000930 NP_000921 A/C A34D minus 23478996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31961 rs8178733 PLAT 5327 8 42168061 NM_000930 NP_000921 A/C A34D minus 23478996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31962 rs8178733 PLAT 5327 8 42168061 NM_000931 NP_000922 A/C A34D minus 9806884 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31963 rs8178733 PLAT 5327 8 42168061 NM_000931 NP_000922 A/C A34D minus 23478996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31964 rs8178733 PLAT 5327 8 42168061 NM_000931 NP_000922 A/C A34D minus 23478996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31965 rs8178733 PLAT 5327 8 42168061 NM_000931 NP_000922 A/C A34D minus 23478996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31966 rs8178733 PLAT 5327 8 42168061 NM_033011 NP_127509 A/C A34D minus 9806884 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31967 rs8178733 PLAT 5327 8 42168061 NM_033011 NP_127509 A/C A34D minus 23478996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31968 rs8178733 PLAT 5327 8 42168061 NM_033011 NP_127509 A/C A34D minus 23478996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31969 rs8178733 PLAT 5327 8 42168061 NM_033011 NP_127509 A/C A34D minus 23478996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p12 "plasminogen activator, tissue" 31970 rs8178847 APOH 350 17 61647277 NM_000042 NP_000033 A/G R154H minus 9807015 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 117 by freq 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 31971 rs8178847 APOH 350 17 61647277 NM_000042 NP_000033 A/G R154H minus 9807015 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.07 117 by freq 17q23-qter apolipoprotein H (beta-2-glycoprotein I) 31972 rs8178967 GPX4 2879 19 1055047 NM_002085 NP_002076 A/G S2N plus 9807170 693 EGP_SNPS PDR90 NIHPDR 156 0.04 117 by freq 19p13.3 glutathione peroxidase 4 (phospholipid hydroperoxidase) 31973 rs8178989 CHAT 1103 10 50498632 NM_020549 NP_065574 C/G R222P plus 9807220 880 CIGMR CHAT/VACHT 346 0.03 117 by freq 10q11.2 choline acetyltransferase 31974 rs8178989 CHAT 1103 10 50498632 NM_020984 NP_066264 C/G R104P plus 9807220 880 CIGMR CHAT/VACHT 346 0.03 117 by freq 10q11.2 choline acetyltransferase 31975 rs8178989 CHAT 1103 10 50498632 NM_020985 NP_066265 C/G R104P plus 9807220 880 CIGMR CHAT/VACHT 346 0.03 117 by freq 10q11.2 choline acetyltransferase 31976 rs8178989 CHAT 1103 10 50498632 NM_020986 NP_066266 C/G R104P plus 9807220 880 CIGMR CHAT/VACHT 346 0.03 117 by freq 10q11.2 choline acetyltransferase 31977 rs8178990 CHAT 1103 10 50500177 NM_020549 NP_065574 C/T L243F plus 9807221 880 CIGMR CHAT/VACHT 1532 0.06 120 "by cluster,freq" 10q11.2 choline acetyltransferase 31978 rs8178990 CHAT 1103 10 50500177 NM_020984 NP_066264 C/T L125F plus 9807221 880 CIGMR CHAT/VACHT 1532 0.06 120 "by cluster,freq" 10q11.2 choline acetyltransferase 31979 rs8178990 CHAT 1103 10 50500177 NM_020985 NP_066265 C/T L125F plus 9807221 880 CIGMR CHAT/VACHT 1532 0.06 120 "by cluster,freq" 10q11.2 choline acetyltransferase 31980 rs8178990 CHAT 1103 10 50500177 NM_020986 NP_066266 C/T L125F plus 9807221 880 CIGMR CHAT/VACHT 1532 0.06 120 "by cluster,freq" 10q11.2 choline acetyltransferase 31981 rs8178991 CHAT 1103 10 50524643 NM_020549 NP_065574 A/G D400N plus 9807222 880 CIGMR CHAT/VACHT 350 0.01 117 by freq 10q11.2 choline acetyltransferase 31982 rs8178991 CHAT 1103 10 50524643 NM_020984 NP_066264 A/G D282N plus 9807222 880 CIGMR CHAT/VACHT 350 0.01 117 by freq 10q11.2 choline acetyltransferase 31983 rs8178991 CHAT 1103 10 50524643 NM_020985 NP_066265 A/G D282N plus 9807222 880 CIGMR CHAT/VACHT 350 0.01 117 by freq 10q11.2 choline acetyltransferase 31984 rs8178991 CHAT 1103 10 50524643 NM_020986 NP_066266 A/G D282N plus 9807222 880 CIGMR CHAT/VACHT 350 0.01 117 by freq 10q11.2 choline acetyltransferase 31985 rs8179142 SELPLG 6404 12 107519814 NM_003006 NP_002997 C/T P236S minus 12568539 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 117 by freq 12q24 selectin P ligand 31986 rs8179169 GPX1 2876 3 49370702 NM_000581 NP_000572 C/G R5P minus 12568570 693 EGP_SNPS PDR90 NIHPDR 180 0.02 117 by freq 3p21.3 glutathione peroxidase 1 31987 rs8179169 GPX1 2876 3 49370702 NM_201397 NP_958799 C/G R5P minus 12568570 693 EGP_SNPS PDR90 NIHPDR 180 0.02 117 by freq 3p21.3 glutathione peroxidase 1 31988 rs8179183 LEPR 3953 1 65787973 NM_002303 NP_002294 C/G K656N plus 12568604 887 CUORCGL AMERICAN CAUCASIANS American Caucasians 1775 0.18 123 "by cluster,freq" 1p31 leptin receptor 31989 rs8179183 LEPR 3953 1 65787973 NM_002303 NP_002294 C/G K656N plus 24796666 1303 SEQUENOM CEPH CEPH (92) 184 0.2 123 "by cluster,freq" 1p31 leptin receptor 31990 rs8181512 OR52N2 390077 11 5798932 XM_372365 XP_372365 A/G H264R plus 23526546 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31991 rs8181512 OR52N2 390077 11 5798932 XM_372365 XP_372365 A/G H264R plus 23526546 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31992 rs8181512 OR52N2 390077 11 5798932 XM_372365 XP_372365 A/G H264R plus 23526546 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31993 rs8181529 OR52N2 390077 11 5798886 XM_372365 XP_372365 G/T S249A plus 23526534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31994 rs8181529 OR52N2 390077 11 5798886 XM_372365 XP_372365 G/T S249A plus 23526534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31995 rs8181529 OR52N2 390077 11 5798886 XM_372365 XP_372365 G/T S249A plus 23526534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily N, member 2" 31996 rs8187636 SLC29A1 2030 6 44308633 NM_004955 NP_004946 A/G E391K plus 12580141 885 TSC-CSHL HapMap-CEPH-30-trios 114 1 117 HapMap 6p21.1-p21.2 "solute carrier family 29 (nucleoside transporters), member 1" 31997 rs8187636 SLC29A1 2030 6 44308633 NM_004955 NP_004946 A/G E391K plus 12580141 890 PHARMGKB_PMT PA127938020 482 0 117 HapMap 6p21.1-p21.2 "solute carrier family 29 (nucleoside transporters), member 1" 31998 rs8187641 SLC29A1 2030 6 44306340 NM_004955 NP_004946 C/T I216T plus 12580146 890 PHARMGKB_PMT PA127938020 484 0.01 117 by freq 6p21.1-p21.2 "solute carrier family 29 (nucleoside transporters), member 1" 31999 rs8187668 ABCC2 1244 10 101549084 NM_000392 NP_000383 A/G D333G plus 12580175 892 PHARMGKB_PMT PA128307340 494 0 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32000 rs8187676 ABCC2 1244 10 101562806 NM_000392 NP_000383 C/T I670T plus 12580186 892 PHARMGKB_PMT PA128307340 494 0.01 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32001 rs8187685 ABCC2 1244 10 101581727 NM_000392 NP_000383 C/T I1036T plus 12580199 892 PHARMGKB_PMT PA128307340 492 0 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32002 rs8187689 ABCC2 1244 10 101568942 NM_000392 NP_000383 G/T L849R plus 12580207 892 PHARMGKB_PMT PA128307340 488 0.01 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32003 rs8187692 ABCC2 1244 10 101585965 NM_000392 NP_000383 G/T R1181L plus 12580210 892 PHARMGKB_PMT PA128307340 494 0.03 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32004 rs8187692 ABCC2 1244 10 101585965 NM_000392 NP_000383 G/T R1181L plus 23597120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32005 rs8187692 ABCC2 1244 10 101585965 NM_000392 NP_000383 G/T R1181L plus 23597120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32006 rs8187692 ABCC2 1244 10 101585965 NM_000392 NP_000383 G/T R1181L plus 23597120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32007 rs8187694 ABCC2 1244 10 101585986 NM_000392 NP_000383 A/T V1188E plus 12580212 892 PHARMGKB_PMT PA128307340 494 0.06 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32008 rs8187700 ABCC2 1244 10 101594097 NM_000392 NP_000383 C/T P1291L plus 12580218 892 PHARMGKB_PMT PA128307340 482 0.01 117 by freq 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32009 rs8187710 ABCC2 1244 10 101601284 NM_000392 NP_000383 A/G C1515Y plus 12580232 892 PHARMGKB_PMT PA128307340 484 0.12 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32010 rs8187710 ABCC2 1244 10 101601284 NM_000392 NP_000383 A/G C1515Y plus 23597239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32011 rs8187710 ABCC2 1244 10 101601284 NM_000392 NP_000383 A/G C1515Y plus 23597239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32012 rs8187710 ABCC2 1244 10 101601284 NM_000392 NP_000383 A/G C1515Y plus 23597239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" 32013 rs8187715 SLC22A3 6581 6 160739993 NM_021977 NP_068812 C/T T44M plus 12580239 893 PHARMGKB_PMT PA128176200 426 0.01 117 by freq 6q26-q27 "solute carrier family 22 (extraneuronal monoamine transporter), member 3" 32014 rs8187717 SLC22A3 6581 6 160740208 NM_021977 NP_068812 G/T A116S plus 12580241 893 PHARMGKB_PMT PA128176200 448 0.01 117 by freq 6q26-q27 "solute carrier family 22 (extraneuronal monoamine transporter), member 3" 32015 rs8187730 SLC18A3 6572 10 50490351 NM_003055 NP_003046 A/C A520E plus 12580257 894 PHARMGKB_PMT PA128225780 494 0.12 121 "HapMap,cluster" 10q11.2 "solute carrier family 18 (vesicular acetylcholine), member 3" 32016 rs8187730 SLC18A3 6572 10 50490351 NM_003055 NP_003046 A/C A520E plus 15779184 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 10q11.2 "solute carrier family 18 (vesicular acetylcholine), member 3" 32017 rs8187733 SLC18A3 6572 10 50488829 NM_003055 NP_003046 C/G A13P plus 12580262 894 PHARMGKB_PMT PA128225780 494 0.02 117 by freq 10q11.2 "solute carrier family 18 (vesicular acetylcholine), member 3" 32018 rs8187734 SLC18A3 6572 10 50488877 NM_003055 NP_003046 C/T R29W plus 12580263 894 PHARMGKB_PMT PA128225780 494 0.01 117 by freq 10q11.2 "solute carrier family 18 (vesicular acetylcholine), member 3" 32019 rs8187738 SLC28A1 9154 15 83232033 NM_004213 NP_004204 C/G S13C plus 12580269 895 PHARMGKB_PMT PA128336060 474 0 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32020 rs8187738 SLC28A1 9154 15 83232033 NM_201651 NP_964014 C/G S13C plus 12580269 895 PHARMGKB_PMT PA128336060 474 0 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32021 rs8187744 SLC28A1 9154 15 83233038 NM_004213 NP_004204 A/G S43N plus 12580275 895 PHARMGKB_PMT PA128336060 490 0.01 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32022 rs8187744 SLC28A1 9154 15 83233038 NM_201651 NP_964014 A/G S43N plus 12580275 895 PHARMGKB_PMT PA128336060 490 0.01 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32023 rs8187754 SLC28A1 9154 15 83248438 NM_004213 NP_004204 G/T A190S plus 12580287 895 PHARMGKB_PMT PA128336060 490 0.02 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32024 rs8187756 SLC28A1 9154 15 83249859 NM_004213 NP_004204 C/T A230V plus 12580289 895 PHARMGKB_PMT PA128336060 494 0 117 by freq 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32025 rs8187758 SLC28A1 9154 15 83249879 NM_004213 NP_004204 A/C Q237K plus 12580291 895 PHARMGKB_PMT PA128336060 494 0.2 123 "by cluster,freq" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32026 rs8187758 SLC28A1 9154 15 83249879 NM_004213 NP_004204 A/C Q237K plus 23940503 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32027 rs8187758 SLC28A1 9154 15 83249879 NM_004213 NP_004204 A/C Q237K plus 23940503 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32028 rs8187758 SLC28A1 9154 15 83249879 NM_004213 NP_004204 A/C Q237K plus 23940503 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 15q25-26 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1" 32029 rs8187792 ABCB4 5244 7 86724056 NM_000443 NP_000434 C/G L238V minus 12580334 896 PHARMGKB_PMT PA128059180 492 0.01 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32030 rs8187792 ABCB4 5244 7 86724056 NM_018849 NP_061337 C/G L238V minus 12580334 896 PHARMGKB_PMT PA128059180 492 0.01 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32031 rs8187792 ABCB4 5244 7 86724056 NM_018850 NP_061338 C/G L238V minus 12580334 896 PHARMGKB_PMT PA128059180 492 0.01 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32032 rs8187797 ABCB4 5244 7 86713781 NM_000443 NP_000434 C/G E528D minus 12580341 896 PHARMGKB_PMT PA128059180 494 0.02 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32033 rs8187797 ABCB4 5244 7 86713781 NM_018849 NP_061337 C/G E528D minus 12580341 896 PHARMGKB_PMT PA128059180 494 0.02 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32034 rs8187797 ABCB4 5244 7 86713781 NM_018850 NP_061338 C/G E528D minus 12580341 896 PHARMGKB_PMT PA128059180 494 0.02 117 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32035 rs8187799 ABCB4 5244 7 86700827 NM_000443 NP_000434 A/G R652G minus 12580343 896 PHARMGKB_PMT PA128059180 492 0.18 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32036 rs8187799 ABCB4 5244 7 86700827 NM_000443 NP_000434 A/G R652G minus 23472671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32037 rs8187799 ABCB4 5244 7 86700827 NM_000443 NP_000434 A/G R652G minus 23472671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32038 rs8187799 ABCB4 5244 7 86700827 NM_000443 NP_000434 A/G R652G minus 23472671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32039 rs8187799 ABCB4 5244 7 86700827 NM_018849 NP_061337 A/G R652G minus 12580343 896 PHARMGKB_PMT PA128059180 492 0.18 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32040 rs8187799 ABCB4 5244 7 86700827 NM_018849 NP_061337 A/G R652G minus 23472671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32041 rs8187799 ABCB4 5244 7 86700827 NM_018849 NP_061337 A/G R652G minus 23472671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32042 rs8187799 ABCB4 5244 7 86700827 NM_018849 NP_061337 A/G R652G minus 23472671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32043 rs8187799 ABCB4 5244 7 86700827 NM_018850 NP_061338 A/G R652G minus 12580343 896 PHARMGKB_PMT PA128059180 492 0.18 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32044 rs8187799 ABCB4 5244 7 86700827 NM_018850 NP_061338 A/G R652G minus 23472671 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32045 rs8187799 ABCB4 5244 7 86700827 NM_018850 NP_061338 A/G R652G minus 23472671 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32046 rs8187799 ABCB4 5244 7 86700827 NM_018850 NP_061338 A/G R652G minus 23472671 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32047 rs8187801 ABCB4 5244 7 86693996 NM_000443 NP_000434 A/G R788Q minus 12580346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32048 rs8187801 ABCB4 5244 7 86693996 NM_000443 NP_000434 A/G R788Q minus 12580346 896 PHARMGKB_PMT PA128059180 494 0.03 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32049 rs8187801 ABCB4 5244 7 86693996 NM_018849 NP_061337 A/G R788Q minus 12580346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32050 rs8187801 ABCB4 5244 7 86693996 NM_018849 NP_061337 A/G R788Q minus 12580346 896 PHARMGKB_PMT PA128059180 494 0.03 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32051 rs8187801 ABCB4 5244 7 86693996 NM_018850 NP_061338 A/G R788Q minus 12580346 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32052 rs8187801 ABCB4 5244 7 86693996 NM_018850 NP_061338 A/G R788Q minus 12580346 896 PHARMGKB_PMT PA128059180 494 0.03 117 HapMap 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" 32053 rs8187818 SLC15A1 6564 13 98176665 NM_005073 NP_005064 A/G V21I minus 12580367 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 HapMap 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 32054 rs8187820 SLC15A1 6564 13 98174168 NM_005073 NP_005064 A/G V122M minus 12580369 897 PHARMGKB_PMT PA128183726 492 0.01 117 by freq 13q33-q34 "solute carrier family 15 (oligopeptide transporter), member 1" 32055 rs8190315 BID 637 22 16601318 NM_001196 NP_001187 A/G S10G minus 12583875 693 EGP_SNPS PDR90 NIHPDR 174 0.05 117 by freq 22q11.1 BH3 interacting domain death agonist 32056 rs8190315 BID 637 22 16601318 NM_197966 NP_932070 A/G S56G minus 12583875 693 EGP_SNPS PDR90 NIHPDR 174 0.05 117 by freq 22q11.1 BH3 interacting domain death agonist 32057 rs8190955 GSR 2936 8 30685166 NM_000637 NP_000628 C/T R110C minus 12584758 693 EGP_SNPS PDR90 NIHPDR 172 0.03 117 by freq 8p21.1 glutathione reductase 32058 rs8190976 GSR 2936 8 30677141 NM_000637 NP_000628 A/G G189S minus 12584781 693 EGP_SNPS PDR90 NIHPDR 170 0.01 117 by freq 8p21.1 glutathione reductase 32059 rs8191136 HSD17B2 3294 16 80659371 NM_002153 NP_002144 A/G A121T plus 12584980 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32060 rs8191136 HSD17B2 3294 16 80659371 NM_002153 NP_002144 A/G A121T plus 23466800 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32061 rs8191136 HSD17B2 3294 16 80659371 NM_002153 NP_002144 A/G A121T plus 23466800 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32062 rs8191136 HSD17B2 3294 16 80659371 NM_002153 NP_002144 A/G A121T plus 23466800 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32063 rs8191246 HSD17B2 3294 16 80689541 NM_002153 NP_002144 A/G *388W plus 12585112 693 EGP_SNPS PDR90 NIHPDR 178 0.03 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32064 rs8191246 HSD17B2 3294 16 80689541 NM_002153 NP_002144 A/G *388W plus 23525164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32065 rs8191246 HSD17B2 3294 16 80689541 NM_002153 NP_002144 A/G *388W plus 23525164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32066 rs8191246 HSD17B2 3294 16 80689541 NM_002153 NP_002144 A/G *388W plus 23525164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 16q24.1-q24.2 hydroxysteroid (17-beta) dehydrogenase 2 32067 rs8191371 GPI 2821 19 39560616 NM_000175 NP_000166 C/T I208T plus 12585263 693 EGP_SNPS PDR90 NIHPDR 174 0.02 123 by freq 19q13.1 glucose phosphate isomerase 32068 rs8191371 GPI 2821 19 39560616 NM_000175 NP_000166 C/T I208T plus 24527843 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 19q13.1 glucose phosphate isomerase 32069 rs8191371 GPI 2821 19 39560616 NM_000175 NP_000166 C/T I208T plus 24527843 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 by freq 19q13.1 glucose phosphate isomerase 32070 rs8191371 GPI 2821 19 39560616 NM_000175 NP_000166 C/T I208T plus 24527843 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19q13.1 glucose phosphate isomerase 32071 rs8191612 NEIL2 252969 8 11674684 NM_145043 NP_659480 C/T R103W plus 12585561 693 EGP_SNPS PDR90 NIHPDR 180 0.01 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32072 rs8191612 NEIL2 252969 8 11674684 NM_145043 NP_659480 C/T R103W plus 23377437 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32073 rs8191612 NEIL2 252969 8 11674684 NM_145043 NP_659480 C/T R103W plus 23377437 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32074 rs8191612 NEIL2 252969 8 11674684 NM_145043 NP_659480 C/T R103W plus 23377437 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32075 rs8191613 NEIL2 252969 8 11674685 NM_145043 NP_659480 A/G R103Q plus 12585562 693 EGP_SNPS PDR90 NIHPDR 178 0.07 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32076 rs8191613 NEIL2 252969 8 11674685 NM_145043 NP_659480 A/G R103Q plus 23966930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32077 rs8191613 NEIL2 252969 8 11674685 NM_145043 NP_659480 A/G R103Q plus 23966930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32078 rs8191613 NEIL2 252969 8 11674685 NM_145043 NP_659480 A/G R103Q plus 23966930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 8p23.1 nei like 2 (E. coli) 32079 rs8191664 NEIL2 252969 8 11680962 NM_145043 NP_659480 G/T R257L plus 12585623 693 EGP_SNPS PDR90 NIHPDR 170 0.06 117 by freq 8p23.1 nei like 2 (E. coli) 32080 rs8191746 IGF2R 3482 6 160416109 NM_000876 NP_000867 C/T P203L plus 12585723 693 EGP_SNPS PDR90 NIHPDR 176 0.02 117 by freq 6q26 insulin-like growth factor 2 receptor 32081 rs8191754 IGF2R 3482 6 160418735 NM_000876 NP_000867 C/G L252V plus 12585734 693 EGP_SNPS PDR90 NIHPDR 174 0.14 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 32082 rs8191754 IGF2R 3482 6 160418735 NM_000876 NP_000867 C/G L252V plus 24053159 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 32083 rs8191754 IGF2R 3482 6 160418735 NM_000876 NP_000867 C/G L252V plus 24053159 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 32084 rs8191754 IGF2R 3482 6 160418735 NM_000876 NP_000867 C/G L252V plus 24053159 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 6q26 insulin-like growth factor 2 receptor 32085 rs8191797 IGF2R 3482 6 160437232 NM_000876 NP_000867 A/G G604S plus 12585792 693 EGP_SNPS PDR90 NIHPDR 180 0.01 117 by freq 6q26 insulin-like growth factor 2 receptor 32086 rs8191819 IGF2R 3482 6 160441967 NM_000876 NP_000867 A/G G856S plus 12585826 693 EGP_SNPS PDR90 NIHPDR 178 0.02 117 by freq 6q26 insulin-like growth factor 2 receptor 32087 rs8191842 IGF2R 3482 6 160453003 NM_000876 NP_000867 C/T T1107M plus 12585853 693 EGP_SNPS PDR90 NIHPDR 180 0.02 117 by freq 6q26 insulin-like growth factor 2 receptor 32088 rs8191844 IGF2R 3482 6 160453340 NM_000876 NP_000867 C/G T1184S plus 12585855 693 EGP_SNPS PDR90 NIHPDR 178 0.01 117 by freq 6q26 insulin-like growth factor 2 receptor 32089 rs8192111 MGST2 4258 4 140982286 NM_002413 NP_002404 C/T A101V plus 12586204 693 EGP_SNPS PDR90 NIHPDR 176 0.01 117 by freq 4q28.3 microsomal glutathione S-transferase 2 32090 rs8192284 IL6R 3570 1 151240043 NM_000565 NP_000556 A/C D358A plus 12586468 912 HDSHIN KOREAN Korea 600 0.42 120 "by doubleHit,freq,cluster" 1q21 interleukin 6 receptor 32091 rs8192284 IL6R 3570 1 151240043 NM_000565 NP_000556 A/C D358A plus 16338697 1120 WIPGA POP-WIPGA-12-05-2003 CORIELL Mixed 60 0.25 120 "by doubleHit,freq,cluster" 1q21 interleukin 6 receptor 32092 rs8192297 ANPEP 290 15 88145356 NM_001150 NP_001141 A/G I603M minus 23530830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 32093 rs8192297 ANPEP 290 15 88145356 NM_001150 NP_001141 A/G I603M minus 23530830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 32094 rs8192297 ANPEP 290 15 88145356 NM_001150 NP_001141 A/G I603M minus 23530830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 32095 rs8192341 SFTPC 6440 8 22076982 NM_003018 NP_003009 A/C T138N plus 12586553 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.13 120 "by cluster,freq" 8p21 "surfactant, pulmonary-associated protein C" 32096 rs8192506 DBI 1622 2 119846071 NM_020548 NP_065438 A/G M88V plus 24318039 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 2q12-q21 "diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein)" 32097 rs8192506 DBI 1622 2 119846071 NM_020548 NP_065438 A/G M88V plus 24318039 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2q12-q21 "diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein)" 32098 rs8192506 DBI 1622 2 119846071 NM_020548 NP_065438 A/G M88V plus 24318039 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q12-q21 "diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein)" 32099 rs8192548 MFNG 4242 22 36190563 NM_002405 NP_002396 C/T R302C minus 12586875 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,freq" 22q12 manic fringe homolog (Drosophila) 32100 rs8192548 MFNG 4242 22 36190563 NM_002405 NP_002396 C/T R302C minus 24601914 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,freq" 22q12 manic fringe homolog (Drosophila) 32101 rs8192548 MFNG 4242 22 36190563 NM_002405 NP_002396 C/T R302C minus 24601914 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,freq" 22q12 manic fringe homolog (Drosophila) 32102 rs8192548 MFNG 4242 22 36190563 NM_002405 NP_002396 C/T R302C minus 24601914 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq" 22q12 manic fringe homolog (Drosophila) 32103 rs8192624 TRAR4 319100 6 132933946 NM_175067 NP_778237 A/G V265I plus 23389004 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 6q23.1 trace amine receptor 4 32104 rs8192624 TRAR4 319100 6 132933946 NM_175067 NP_778237 A/G V265I plus 23389004 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6q23.1 trace amine receptor 4 32105 rs8192624 TRAR4 319100 6 132933946 NM_175067 NP_778237 A/G V265I plus 23389004 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 6q23.1 trace amine receptor 4 32106 rs8192625 TRAR4 319100 6 132934025 NM_175067 NP_778237 A/G C291Y plus 23389017 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 6q23.1 trace amine receptor 4 32107 rs8192625 TRAR4 319100 6 132934025 NM_175067 NP_778237 A/G C291Y plus 23389017 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 6q23.1 trace amine receptor 4 32108 rs8192625 TRAR4 319100 6 132934025 NM_175067 NP_778237 A/G C291Y plus 23389017 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 6q23.1 trace amine receptor 4 32109 rs8192646 GPR58 9287 6 132980535 NM_014626 NP_055441 C/T W123X plus 12587039 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,freq,cluster" 6q24 G protein-coupled receptor 58 32110 rs8192646 GPR58 9287 6 132980535 NM_014626 NP_055441 C/T W123X plus 23974238 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "HapMap,doubleHit,freq,cluster" 6q24 G protein-coupled receptor 58 32111 rs8192646 GPR58 9287 6 132980535 NM_014626 NP_055441 C/T W123X plus 23974238 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "HapMap,doubleHit,freq,cluster" 6q24 G protein-coupled receptor 58 32112 rs8192646 GPR58 9287 6 132980535 NM_014626 NP_055441 C/T W123X plus 23974238 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 6q24 G protein-coupled receptor 58 32113 rs8192678 PPARGC1A 10891 4 23491931 NM_013261 NP_037393 A/G G482S minus 12587287 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.36 123 "by doubleHit,freq,cluster" 4p15.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, alpha" 32114 rs8192678 PPARGC1A 10891 4 23491931 NM_013261 NP_037393 A/G G482S minus 23944454 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 4p15.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, alpha" 32115 rs8192678 PPARGC1A 10891 4 23491931 NM_013261 NP_037393 A/G G482S minus 23944454 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 4p15.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, alpha" 32116 rs8192678 PPARGC1A 10891 4 23491931 NM_013261 NP_037393 A/G G482S minus 23944454 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 4p15.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, alpha" 32117 rs8192683 ENPP1 5167 6 132253223 NM_006208 NP_006199 C/G R834T plus 12587307 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 by freq 6q22-q23 ectonucleotide pyrophosphatase/phosphodiesterase 1 32118 rs8192687 PPP1R3A 5506 7 113152870 NM_002711 NP_002702 A/G G45S minus 12587314 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 117 HapMap 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 32119 rs8192687 PPP1R3A 5506 7 113152870 NM_002711 NP_002702 A/G G45S minus 12587314 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 HapMap 7q31.2 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)" 32120 rs8192690 ABCC8 6833 11 17371146 NM_000352 NP_000343 A/G V1572I minus 12587333 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 117 "HapMap,freq" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 32121 rs8192690 ABCC8 6833 11 17371146 NM_000352 NP_000343 A/G V1572I minus 12587333 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.07 117 "HapMap,freq" 11p15.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 8" 32122 rs8192702 SLC2A4 6517 17 7129183 NM_001042 NP_001033 C/T A358V plus 12587373 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.01 117 by freq 17p13 "solute carrier family 2 (facilitated glucose transporter), member 4" 32123 rs8192707 PLCG1 5335 20 39225477 NM_002660 NP_002651 A/G S279G plus 12587392 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.17 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32124 rs8192707 PLCG1 5335 20 39225477 NM_002660 NP_002651 A/G S279G plus 23536128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.15 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32125 rs8192707 PLCG1 5335 20 39225477 NM_002660 NP_002651 A/G S279G plus 23536128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32126 rs8192707 PLCG1 5335 20 39225477 NM_002660 NP_002651 A/G S279G plus 23536128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32127 rs8192707 PLCG1 5335 20 39225477 NM_182811 NP_877963 A/G S279G plus 12587392 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.17 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32128 rs8192707 PLCG1 5335 20 39225477 NM_182811 NP_877963 A/G S279G plus 23536128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.15 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32129 rs8192707 PLCG1 5335 20 39225477 NM_182811 NP_877963 A/G S279G plus 23536128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32130 rs8192707 PLCG1 5335 20 39225477 NM_182811 NP_877963 A/G S279G plus 23536128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 "by cluster,freq" 20q12-q13.1 "phospholipase C, gamma 1" 32131 rs8192708 PCK1 5105 20 55572027 NM_002591 NP_002582 A/G I267V plus 12587404 928 IBARROSO ELY UK (Ely region of East Anglia) 921 0.12 123 "by cluster,freq" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 32132 rs8192708 PCK1 5105 20 55572027 NM_002591 NP_002582 A/G I267V plus 24451444 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 32133 rs8192708 PCK1 5105 20 55572027 NM_002591 NP_002582 A/G I267V plus 24451444 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 32134 rs8192708 PCK1 5105 20 55572027 NM_002591 NP_002582 A/G I267V plus 24451444 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q13.31 phosphoenolpyruvate carboxykinase 1 (soluble) 32135 rs8192709 CYP2B6 1555 19 46189114 NM_000767 NP_000758 C/T R22C plus 20421523 1244 PHARMGKB_PAAR-SJCRH PA130240278 120 0.08 121 "by cluster,freq" 19q13.2 "cytochrome P450, family 2, subfamily B, polypeptide 6" 32136 rs8192917 GZMB 3002 14 24172000 NM_004131 NP_004122 A/G R55Q minus 23799430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 32137 rs8192917 GZMB 3002 14 24172000 NM_004131 NP_004122 A/G R55Q minus 23799430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 32138 rs8192917 GZMB 3002 14 24172000 NM_004131 NP_004122 A/G R55Q minus 23799430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 14q11.2 "granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)" 32139 rs9262138 DHX16 8449 6 30735846 NM_003587 NP_003578 C/T D566G plus 23415058 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6p21.3 DEAH (Asp-Glu-Ala-His) box polypeptide 16 32140 rs9262138 DHX16 8449 6 30735846 NM_003587 NP_003578 C/T D566G plus 23415058 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 6p21.3 DEAH (Asp-Glu-Ala-His) box polypeptide 16 32141 rs9262138 DHX16 8449 6 30735846 NM_003587 NP_003578 C/T D566G plus 23415058 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6p21.3 DEAH (Asp-Glu-Ala-His) box polypeptide 16 32142 rs9267532 LY6G5B 58496 6 31747958 NM_021221 NP_067044 C/T R121C plus 23324277 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 32143 rs9267532 LY6G5B 58496 6 31747958 NM_021221 NP_067044 C/T R121C plus 23324277 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 32144 rs9267532 LY6G5B 58496 6 31747958 NM_021221 NP_067044 C/T R121C plus 23324277 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 6p21.3 "lymphocyte antigen 6 complex, locus G5B" 32145 rs9272430 HLA-DQA1 3117 6 32713235 NM_002122 NP_002113 A/C L8M plus 24796310 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 32146 rs9272745 HLA-DQA1 3117 6 32717784 NM_002122 NP_002113 C/T T130I plus 24816074 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 32147 rs9272793 HLA-DQA1 3117 6 32718473 NM_002122 NP_002113 A/G Q241R plus 24796311 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 32148 rs9272793 HLA-DQA1 3117 6 32718473 NM_002122 NP_002113 A/G Q241R plus 24816235 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 "by cluster,freq" 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 32149 rs9276814 PSMB9 5698 6 32933068 NM_002800 NP_002791 A/G R60H plus 24652608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32150 rs9276814 PSMB9 5698 6 32933068 NM_002800 NP_002791 A/G R60H plus 24652608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32151 rs9276814 PSMB9 5698 6 32933068 NM_002800 NP_002791 A/G R60H plus 24652608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32152 rs9276814 PSMB9 5698 6 32933068 NM_002800 NP_002791 A/G R60H plus 24796296 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32153 rs9276814 PSMB9 5698 6 32933068 NM_148954 NP_683756 A/G R50H plus 24652608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32154 rs9276814 PSMB9 5698 6 32933068 NM_148954 NP_683756 A/G R50H plus 24652608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32155 rs9276814 PSMB9 5698 6 32933068 NM_148954 NP_683756 A/G R50H plus 24652608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32156 rs9276814 PSMB9 5698 6 32933068 NM_148954 NP_683756 A/G R50H plus 24796296 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "by doubleHit,freq,cluster" 6p21.3 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)" 32157 rs9277934 COL11A2 1302 6 33261506 NM_080680 NP_542411 C/T E276K plus 24680992 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 6p21.3 "collagen, type XI, alpha 2" 32158 rs9277934 COL11A2 1302 6 33261506 NM_080680 NP_542411 C/T E276K plus 24680992 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 6p21.3 "collagen, type XI, alpha 2" 32159 rs9277934 COL11A2 1302 6 33261506 NM_080680 NP_542411 C/T E276K plus 24680992 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 6p21.3 "collagen, type XI, alpha 2" 32160 rs9282541 ABCA1 19 9 104700390 NM_005502 NP_005493 C/T R230C minus 12674796 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32161 rs9282541 ABCA1 19 9 104700390 NM_005502 NP_005493 C/T R230C minus 12674796 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32162 rs9282541 ABCA1 19 9 104700390 NM_005502 NP_005493 C/T R230C minus 12674796 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32163 rs9282541 ABCA1 19 9 104700390 NM_005502 NP_005493 C/T R230C minus 12674796 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32164 rs9282541 ABCA1 19 9 104700390 NM_005502 NP_005493 C/T R230C minus 12674796 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32165 rs9282543 ABCA1 19 9 104678931 NM_005502 NP_005493 C/T V399A minus 12674799 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32166 rs9282543 ABCA1 19 9 104678931 NM_005502 NP_005493 C/T V399A minus 12674799 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.03 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32167 rs9282543 ABCA1 19 9 104678931 NM_005502 NP_005493 C/T V399A minus 12674799 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32168 rs9282543 ABCA1 19 9 104678931 NM_005502 NP_005493 C/T V399A minus 12674799 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32169 rs9282543 ABCA1 19 9 104678931 NM_005502 NP_005493 C/T V399A minus 12674799 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 9q31.1 "ATP-binding cassette, sub-family A (ABC1), member 1" 32170 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 12674809 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.2 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32171 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 12674809 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32172 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 12674809 776 SNP500CANCER AFR1 African / African-American (24) 48 0.48 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32173 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 12674809 777 SNP500CANCER HISP1 Hispanic (23) 42 0.14 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32174 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 12674809 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32175 rs9282553 ABCA6 23460 17 64619957 NM_080284 NP_525023 C/G M698I minus 13747705 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.05 123 "HapMap,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32176 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 12674810 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.15 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32177 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 12674810 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32178 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 12674810 776 SNP500CANCER AFR1 African / African-American (24) 48 0.27 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32179 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 12674810 777 SNP500CANCER HISP1 Hispanic (23) 44 0.14 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32180 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 12674810 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32181 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 24120980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32182 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 24120980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32183 rs9282554 ABCA6 23460 17 64621428 NM_080284 NP_525023 A/T N610Y minus 24120980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32184 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 12674810 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.15 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32185 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 12674810 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.08 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32186 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 12674810 776 SNP500CANCER AFR1 African / African-American (24) 48 0.27 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32187 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 12674810 777 SNP500CANCER HISP1 Hispanic (23) 44 0.14 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32188 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 12674810 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32189 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 24120980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32190 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 24120980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32191 rs9282554 ABCA6 23460 17 64621428 NM_172346 NP_758854 A/T N610Y minus 24120980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 6" 32192 rs9282564 ABCB1 5243 7 86874091 NM_000927 NP_000918 A/G N21D minus 12674822 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.04 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32193 rs9282564 ABCB1 5243 7 86874091 NM_000927 NP_000918 A/G N21D minus 12674822 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.06 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32194 rs9282564 ABCB1 5243 7 86874091 NM_000927 NP_000918 A/G N21D minus 12674822 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32195 rs9282564 ABCB1 5243 7 86874091 NM_000927 NP_000918 A/G N21D minus 12674822 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32196 rs9282564 ABCB1 5243 7 86874091 NM_000927 NP_000918 A/G N21D minus 12674822 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32197 rs9282565 ABCB1 5243 7 86859526 NM_000927 NP_000918 A/C A80E minus 12674823 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32198 rs9282565 ABCB1 5243 7 86859526 NM_000927 NP_000918 A/C A80E minus 12674823 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32199 rs9282565 ABCB1 5243 7 86859526 NM_000927 NP_000918 A/C A80E minus 12674823 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32200 rs9282565 ABCB1 5243 7 86859526 NM_000927 NP_000918 A/C A80E minus 12674823 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32201 rs9282565 ABCB1 5243 7 86859526 NM_000927 NP_000918 A/C A80E minus 12674823 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 32202 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 12674829 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32203 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 12674829 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32204 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 12674829 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32205 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 12674829 777 SNP500CANCER HISP1 Hispanic (23) 46 1 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32206 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 12674829 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32207 rs9282570 ABCC4 10257 13 94613455 NM_005845 NP_005836 A/G M744V minus 16339827 1147 PHARMGKB_PMT PA129732580 552 0.01 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 32208 rs9282573 ABCG8 64241 2 44016644 NM_022437 NP_071882 A/G M655V plus 12674833 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32209 rs9282573 ABCG8 64241 2 44016644 NM_022437 NP_071882 A/G M655V plus 12674833 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32210 rs9282573 ABCG8 64241 2 44016644 NM_022437 NP_071882 A/G M655V plus 12674833 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32211 rs9282573 ABCG8 64241 2 44016644 NM_022437 NP_071882 A/G M655V plus 12674833 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32212 rs9282573 ABCG8 64241 2 44016644 NM_022437 NP_071882 A/G M655V plus 12674833 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32213 rs9282574 ABCG8 64241 2 43991210 NM_022437 NP_071882 A/G V210M plus 12674834 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32214 rs9282574 ABCG8 64241 2 43991210 NM_022437 NP_071882 A/G V210M plus 12674834 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32215 rs9282574 ABCG8 64241 2 43991210 NM_022437 NP_071882 A/G V210M plus 12674834 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32216 rs9282574 ABCG8 64241 2 43991210 NM_022437 NP_071882 A/G V210M plus 12674834 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32217 rs9282574 ABCG8 64241 2 43991210 NM_022437 NP_071882 A/G V210M plus 12674834 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 32218 rs9282593 AMACR 23600 5 34025321 NM_014324 NP_055139 A/G M261I minus 12674856 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 32219 rs9282593 AMACR 23600 5 34025321 NM_014324 NP_055139 A/G M261I minus 12674856 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 32220 rs9282593 AMACR 23600 5 34025321 NM_014324 NP_055139 A/G M261I minus 12674856 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 32221 rs9282593 AMACR 23600 5 34025321 NM_014324 NP_055139 A/G M261I minus 12674856 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 32222 rs9282593 AMACR 23600 5 34025321 NM_014324 NP_055139 A/G M261I minus 12674856 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 32223 rs9282603 APOB 338 2 21175538 NM_000384 NP_000375 C/T Y103H minus 12674868 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 32224 rs9282603 APOB 338 2 21175538 NM_000384 NP_000375 C/T Y103H minus 12674868 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 32225 rs9282603 APOB 338 2 21175538 NM_000384 NP_000375 C/T Y103H minus 12674868 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 32226 rs9282603 APOB 338 2 21175538 NM_000384 NP_000375 C/T Y103H minus 12674868 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 32227 rs9282603 APOB 338 2 21175538 NM_000384 NP_000375 C/T Y103H minus 12674868 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 32228 rs9282624 CASP9 842 1 15578775 NM_001229 NP_001220 C/G I185M minus 12674891 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 32229 rs9282624 CASP9 842 1 15578775 NM_001229 NP_001220 C/G I185M minus 12674891 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 32230 rs9282624 CASP9 842 1 15578775 NM_001229 NP_001220 C/G I185M minus 12674891 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 32231 rs9282624 CASP9 842 1 15578775 NM_001229 NP_001220 C/G I185M minus 12674891 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 32232 rs9282624 CASP9 842 1 15578775 NM_001229 NP_001220 C/G I185M minus 12674891 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 1p36.3-p36.1 "caspase 9, apoptosis-related cysteine protease" 32233 rs9282628 CBR3 874 21 36429610 NM_001236 NP_001227 C/G L84V plus 12674900 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.02 118 by freq 21q22.2 carbonyl reductase 3 32234 rs9282628 CBR3 874 21 36429610 NM_001236 NP_001227 C/G L84V plus 12674900 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 118 by freq 21q22.2 carbonyl reductase 3 32235 rs9282628 CBR3 874 21 36429610 NM_001236 NP_001227 C/G L84V plus 12674900 776 SNP500CANCER AFR1 African / African-American (24) 48 0.04 118 by freq 21q22.2 carbonyl reductase 3 32236 rs9282628 CBR3 874 21 36429610 NM_001236 NP_001227 C/G L84V plus 12674900 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 21q22.2 carbonyl reductase 3 32237 rs9282628 CBR3 874 21 36429610 NM_001236 NP_001227 C/G L84V plus 12674900 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 118 by freq 21q22.2 carbonyl reductase 3 32238 rs9282642 CD86 942 3 123307843 NM_006889 NP_008820 A/G S164N plus 12674916 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32239 rs9282642 CD86 942 3 123307843 NM_006889 NP_008820 A/G S164N plus 12674916 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32240 rs9282642 CD86 942 3 123307843 NM_006889 NP_008820 A/G S164N plus 12674916 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32241 rs9282642 CD86 942 3 123307843 NM_006889 NP_008820 A/G S164N plus 12674916 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32242 rs9282642 CD86 942 3 123307843 NM_006889 NP_008820 A/G S164N plus 12674916 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32243 rs9282642 CD86 942 3 123307843 NM_175862 NP_787058 A/G S170N plus 12674916 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32244 rs9282642 CD86 942 3 123307843 NM_175862 NP_787058 A/G S170N plus 12674916 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32245 rs9282642 CD86 942 3 123307843 NM_175862 NP_787058 A/G S170N plus 12674916 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32246 rs9282642 CD86 942 3 123307843 NM_175862 NP_787058 A/G S170N plus 12674916 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32247 rs9282642 CD86 942 3 123307843 NM_175862 NP_787058 A/G S170N plus 12674916 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32248 rs9282648 CD86 942 3 123321048 NM_006889 NP_008820 A/G D317N plus 12674922 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32249 rs9282648 CD86 942 3 123321048 NM_006889 NP_008820 A/G D317N plus 12674922 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32250 rs9282648 CD86 942 3 123321048 NM_006889 NP_008820 A/G D317N plus 12674922 776 SNP500CANCER AFR1 African / African-American (24) 46 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32251 rs9282648 CD86 942 3 123321048 NM_006889 NP_008820 A/G D317N plus 12674922 777 SNP500CANCER HISP1 Hispanic (23) 44 0.05 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32252 rs9282648 CD86 942 3 123321048 NM_006889 NP_008820 A/G D317N plus 12674922 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32253 rs9282648 CD86 942 3 123321048 NM_175862 NP_787058 A/G D323N plus 12674922 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32254 rs9282648 CD86 942 3 123321048 NM_175862 NP_787058 A/G D323N plus 12674922 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32255 rs9282648 CD86 942 3 123321048 NM_175862 NP_787058 A/G D323N plus 12674922 776 SNP500CANCER AFR1 African / African-American (24) 46 0.02 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32256 rs9282648 CD86 942 3 123321048 NM_175862 NP_787058 A/G D323N plus 12674922 777 SNP500CANCER HISP1 Hispanic (23) 44 0.05 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32257 rs9282648 CD86 942 3 123321048 NM_175862 NP_787058 A/G D323N plus 12674922 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21 "CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)" 32258 rs9282670 CYP1B1 1545 2 38213980 NM_000104 NP_000095 A/G Q68R minus 12674944 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32259 rs9282670 CYP1B1 1545 2 38213980 NM_000104 NP_000095 A/G Q68R minus 12674944 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32260 rs9282670 CYP1B1 1545 2 38213980 NM_000104 NP_000095 A/G Q68R minus 12674944 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32261 rs9282670 CYP1B1 1545 2 38213980 NM_000104 NP_000095 A/G Q68R minus 12674944 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32262 rs9282670 CYP1B1 1545 2 38213980 NM_000104 NP_000095 A/G Q68R minus 12674944 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32263 rs9282671 CYP1B1 1545 2 38213942 NM_000104 NP_000095 A/T Y81N minus 12674945 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32264 rs9282671 CYP1B1 1545 2 38213942 NM_000104 NP_000095 A/T Y81N minus 12674945 775 SNP500CANCER CAUC1 Caucasian (31) 60 0.02 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32265 rs9282671 CYP1B1 1545 2 38213942 NM_000104 NP_000095 A/T Y81N minus 12674945 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32266 rs9282671 CYP1B1 1545 2 38213942 NM_000104 NP_000095 A/T Y81N minus 12674945 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32267 rs9282671 CYP1B1 1545 2 38213942 NM_000104 NP_000095 A/T Y81N minus 12674945 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 2p21 "cytochrome P450, family 1, subfamily B, polypeptide 1" 32268 rs9282681 FANCA 2175 16 88333415 NM_000135 NP_000126 A/G T1328A minus 12674957 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.06 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 32269 rs9282681 FANCA 2175 16 88333415 NM_000135 NP_000126 A/G T1328A minus 12674957 775 SNP500CANCER CAUC1 Caucasian (31) 58 0.07 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 32270 rs9282681 FANCA 2175 16 88333415 NM_000135 NP_000126 A/G T1328A minus 12674957 776 SNP500CANCER AFR1 African / African-American (24) 48 1 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 32271 rs9282681 FANCA 2175 16 88333415 NM_000135 NP_000126 A/G T1328A minus 12674957 777 SNP500CANCER HISP1 Hispanic (23) 46 0.04 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 32272 rs9282681 FANCA 2175 16 88333415 NM_000135 NP_000126 A/G T1328A minus 12674957 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.13 123 by freq 16q24.3 "Fanconi anemia, complementation group A" 32273 rs9282689 FTHFD 10840 3 127308728 NM_012190 NP_036322 A/G E803K minus 12674966 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 202 0.01 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32274 rs9282689 FTHFD 10840 3 127308728 NM_012190 NP_036322 A/G E803K minus 12674966 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32275 rs9282689 FTHFD 10840 3 127308728 NM_012190 NP_036322 A/G E803K minus 12674966 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32276 rs9282689 FTHFD 10840 3 127308728 NM_012190 NP_036322 A/G E803K minus 12674966 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32277 rs9282689 FTHFD 10840 3 127308728 NM_012190 NP_036322 A/G E803K minus 12674966 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32278 rs9282691 FTHFD 10840 3 127338363 NM_012190 NP_036322 A/C E429A minus 12674969 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32279 rs9282691 FTHFD 10840 3 127338363 NM_012190 NP_036322 A/C E429A minus 12674969 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32280 rs9282691 FTHFD 10840 3 127338363 NM_012190 NP_036322 A/C E429A minus 12674969 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32281 rs9282691 FTHFD 10840 3 127338363 NM_012190 NP_036322 A/C E429A minus 12674969 777 SNP500CANCER HISP1 Hispanic (23) 44 0.07 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32282 rs9282691 FTHFD 10840 3 127338363 NM_012190 NP_036322 A/C E429A minus 12674969 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32283 rs9282691 FTHFD 10840 3 127338363 NM_144776 NP_658989 A/C E429A minus 12674969 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 198 0.04 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32284 rs9282691 FTHFD 10840 3 127338363 NM_144776 NP_658989 A/C E429A minus 12674969 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32285 rs9282691 FTHFD 10840 3 127338363 NM_144776 NP_658989 A/C E429A minus 12674969 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32286 rs9282691 FTHFD 10840 3 127338363 NM_144776 NP_658989 A/C E429A minus 12674969 777 SNP500CANCER HISP1 Hispanic (23) 44 0.07 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32287 rs9282691 FTHFD 10840 3 127338363 NM_144776 NP_658989 A/C E429A minus 12674969 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32288 rs9282693 FTHFD 10840 3 127338342 NM_012190 NP_036322 C/T A436V minus 12674971 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32289 rs9282693 FTHFD 10840 3 127338342 NM_012190 NP_036322 C/T A436V minus 12674971 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32290 rs9282693 FTHFD 10840 3 127338342 NM_012190 NP_036322 C/T A436V minus 12674971 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32291 rs9282693 FTHFD 10840 3 127338342 NM_012190 NP_036322 C/T A436V minus 12674971 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32292 rs9282693 FTHFD 10840 3 127338342 NM_012190 NP_036322 C/T A436V minus 12674971 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32293 rs9282693 FTHFD 10840 3 127338342 NM_144776 NP_658989 C/T A436V minus 12674971 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 200 0.01 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32294 rs9282693 FTHFD 10840 3 127338342 NM_144776 NP_658989 C/T A436V minus 12674971 775 SNP500CANCER CAUC1 Caucasian (31) 60 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32295 rs9282693 FTHFD 10840 3 127338342 NM_144776 NP_658989 C/T A436V minus 12674971 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32296 rs9282693 FTHFD 10840 3 127338342 NM_144776 NP_658989 C/T A436V minus 12674971 777 SNP500CANCER HISP1 Hispanic (23) 44 1 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32297 rs9282693 FTHFD 10840 3 127338342 NM_144776 NP_658989 C/T A436V minus 12674971 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 118 by freq 3q21.2 formyltetrahydrofolate dehydrogenase 32298 rs9282702 HMOX1 3162 22 34107404 NM_002133 NP_002124 C/T P106L plus 12674982 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 22q13.1 heme oxygenase (decycling) 1 32299 rs9282702 HMOX1 3162 22 34107404 NM_002133 NP_002124 C/T P106L plus 12674982 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 22q13.1 heme oxygenase (decycling) 1 32300 rs9282702 HMOX1 3162 22 34107404 NM_002133 NP_002124 C/T P106L plus 12674982 776 SNP500CANCER AFR1 African / African-American (24) 48 1 118 by freq 22q13.1 heme oxygenase (decycling) 1 32301 rs9282702 HMOX1 3162 22 34107404 NM_002133 NP_002124 C/T P106L plus 12674982 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 22q13.1 heme oxygenase (decycling) 1 32302 rs9282702 HMOX1 3162 22 34107404 NM_002133 NP_002124 C/T P106L plus 12674982 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.02 118 by freq 22q13.1 heme oxygenase (decycling) 1 32303 rs9282731 IGFALS 3483 16 1780778 NM_004970 NP_004961 C/T R548W minus 12675011 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 196 0.07 118 by freq 16p13.3 "insulin-like growth factor binding protein, acid labile subunit" 32304 rs9282731 IGFALS 3483 16 1780778 NM_004970 NP_004961 C/T R548W minus 12675011 775 SNP500CANCER CAUC1 Caucasian (31) 54 0.04 118 by freq 16p13.3 "insulin-like growth factor binding protein, acid labile subunit" 32305 rs9282731 IGFALS 3483 16 1780778 NM_004970 NP_004961 C/T R548W minus 12675011 776 SNP500CANCER AFR1 African / African-American (24) 48 0.17 118 by freq 16p13.3 "insulin-like growth factor binding protein, acid labile subunit" 32306 rs9282731 IGFALS 3483 16 1780778 NM_004970 NP_004961 C/T R548W minus 12675011 777 SNP500CANCER HISP1 Hispanic (23) 46 0.07 118 by freq 16p13.3 "insulin-like growth factor binding protein, acid labile subunit" 32307 rs9282731 IGFALS 3483 16 1780778 NM_004970 NP_004961 C/T R548W minus 12675011 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 16p13.3 "insulin-like growth factor binding protein, acid labile subunit" 32308 rs9282734 IGFBP3 3486 7 45730209 NM_000598 NP_000589 A/C H158P minus 12675014 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.05 118 by freq 7p13-p12 insulin-like growth factor binding protein 3 32309 rs9282734 IGFBP3 3486 7 45730209 NM_000598 NP_000589 A/C H158P minus 12675014 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.07 118 by freq 7p13-p12 insulin-like growth factor binding protein 3 32310 rs9282734 IGFBP3 3486 7 45730209 NM_000598 NP_000589 A/C H158P minus 12675014 776 SNP500CANCER AFR1 African / African-American (24) 48 0.06 118 by freq 7p13-p12 insulin-like growth factor binding protein 3 32311 rs9282734 IGFBP3 3486 7 45730209 NM_000598 NP_000589 A/C H158P minus 12675014 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 118 by freq 7p13-p12 insulin-like growth factor binding protein 3 32312 rs9282734 IGFBP3 3486 7 45730209 NM_000598 NP_000589 A/C H158P minus 12675014 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.06 118 by freq 7p13-p12 insulin-like growth factor binding protein 3 32313 rs9282752 IL8RA 3577 2 218854639 NM_000634 NP_000625 A/C M268L minus 12675036 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 194 0.01 123 by freq 2q35 "interleukin 8 receptor, alpha" 32314 rs9282752 IL8RA 3577 2 218854639 NM_000634 NP_000625 A/C M268L minus 12675036 775 SNP500CANCER CAUC1 Caucasian (31) 58 1 123 by freq 2q35 "interleukin 8 receptor, alpha" 32315 rs9282752 IL8RA 3577 2 218854639 NM_000634 NP_000625 A/C M268L minus 12675036 776 SNP500CANCER AFR1 African / African-American (24) 44 0.02 123 by freq 2q35 "interleukin 8 receptor, alpha" 32316 rs9282752 IL8RA 3577 2 218854639 NM_000634 NP_000625 A/C M268L minus 12675036 777 SNP500CANCER HISP1 Hispanic (23) 44 0.02 123 by freq 2q35 "interleukin 8 receptor, alpha" 32317 rs9282752 IL8RA 3577 2 218854639 NM_000634 NP_000625 A/C M268L minus 12675036 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 123 by freq 2q35 "interleukin 8 receptor, alpha" 32318 rs9282796 MYO5A 4644 15 50398690 NM_000259 NP_000250 C/T S1673L minus 12675092 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 32319 rs9282796 MYO5A 4644 15 50398690 NM_000259 NP_000250 C/T S1673L minus 12675092 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.02 118 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 32320 rs9282796 MYO5A 4644 15 50398690 NM_000259 NP_000250 C/T S1673L minus 12675092 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 32321 rs9282796 MYO5A 4644 15 50398690 NM_000259 NP_000250 C/T S1673L minus 12675092 777 SNP500CANCER HISP1 Hispanic (23) 46 0.02 118 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 32322 rs9282796 MYO5A 4644 15 50398690 NM_000259 NP_000250 C/T S1673L minus 12675092 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 32323 rs9282808 OPRK1 4986 8 54304433 NM_000912 NP_000903 A/G D374N minus 12675109 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.02 118 by freq 8q11.2 "opioid receptor, kappa 1" 32324 rs9282808 OPRK1 4986 8 54304433 NM_000912 NP_000903 A/G D374N minus 12675109 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 8q11.2 "opioid receptor, kappa 1" 32325 rs9282808 OPRK1 4986 8 54304433 NM_000912 NP_000903 A/G D374N minus 12675109 776 SNP500CANCER AFR1 African / African-American (24) 48 0.08 118 by freq 8q11.2 "opioid receptor, kappa 1" 32326 rs9282808 OPRK1 4986 8 54304433 NM_000912 NP_000903 A/G D374N minus 12675109 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 8q11.2 "opioid receptor, kappa 1" 32327 rs9282808 OPRK1 4986 8 54304433 NM_000912 NP_000903 A/G D374N minus 12675109 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 8q11.2 "opioid receptor, kappa 1" 32328 rs9282817 OPRM1 4988 6 154452981 NM_000914 NP_000905 G/T G63V plus 12675118 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 6q24-q25 "opioid receptor, mu 1" 32329 rs9282817 OPRM1 4988 6 154452981 NM_000914 NP_000905 G/T G63V plus 12675118 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 6q24-q25 "opioid receptor, mu 1" 32330 rs9282817 OPRM1 4988 6 154452981 NM_000914 NP_000905 G/T G63V plus 12675118 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 6q24-q25 "opioid receptor, mu 1" 32331 rs9282817 OPRM1 4988 6 154452981 NM_000914 NP_000905 G/T G63V plus 12675118 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 6q24-q25 "opioid receptor, mu 1" 32332 rs9282817 OPRM1 4988 6 154452981 NM_000914 NP_000905 G/T G63V plus 12675118 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 6q24-q25 "opioid receptor, mu 1" 32333 rs9282845 SHBG 6462 17 7474280 NM_001040 NP_001031 A/G R22H plus 12675146 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.01 118 by freq 17p13-p12 sex hormone-binding globulin 32334 rs9282845 SHBG 6462 17 7474280 NM_001040 NP_001031 A/G R22H plus 12675146 775 SNP500CANCER CAUC1 Caucasian (31) 62 1 118 by freq 17p13-p12 sex hormone-binding globulin 32335 rs9282845 SHBG 6462 17 7474280 NM_001040 NP_001031 A/G R22H plus 12675146 776 SNP500CANCER AFR1 African / African-American (24) 48 0.02 118 by freq 17p13-p12 sex hormone-binding globulin 32336 rs9282845 SHBG 6462 17 7474280 NM_001040 NP_001031 A/G R22H plus 12675146 777 SNP500CANCER HISP1 Hispanic (23) 46 1 118 by freq 17p13-p12 sex hormone-binding globulin 32337 rs9282845 SHBG 6462 17 7474280 NM_001040 NP_001031 A/G R22H plus 12675146 778 SNP500CANCER PAC1 Pacific Rim (24) 48 1 118 by freq 17p13-p12 sex hormone-binding globulin 32338 rs9282861 SULT1A1 6817 16 28525015 NM_001055 NP_001046 A/G R213H minus 12675162 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32339 rs9282861 SULT1A1 6817 16 28525015 NM_001055 NP_001046 A/G R213H minus 12675162 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32340 rs9282861 SULT1A1 6817 16 28525015 NM_001055 NP_001046 A/G R213H minus 12675162 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32341 rs9282861 SULT1A1 6817 16 28525015 NM_001055 NP_001046 A/G R213H minus 12675162 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32342 rs9282861 SULT1A1 6817 16 28525015 NM_001055 NP_001046 A/G R213H minus 12675162 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32343 rs9282861 SULT1A1 6817 16 28525015 NM_177529 NP_803565 A/G R213H minus 12675162 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32344 rs9282861 SULT1A1 6817 16 28525015 NM_177529 NP_803565 A/G R213H minus 12675162 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32345 rs9282861 SULT1A1 6817 16 28525015 NM_177529 NP_803565 A/G R213H minus 12675162 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32346 rs9282861 SULT1A1 6817 16 28525015 NM_177529 NP_803565 A/G R213H minus 12675162 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32347 rs9282861 SULT1A1 6817 16 28525015 NM_177529 NP_803565 A/G R213H minus 12675162 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32348 rs9282861 SULT1A1 6817 16 28525015 NM_177530 NP_803566 A/G R213H minus 12675162 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32349 rs9282861 SULT1A1 6817 16 28525015 NM_177530 NP_803566 A/G R213H minus 12675162 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32350 rs9282861 SULT1A1 6817 16 28525015 NM_177530 NP_803566 A/G R213H minus 12675162 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32351 rs9282861 SULT1A1 6817 16 28525015 NM_177530 NP_803566 A/G R213H minus 12675162 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32352 rs9282861 SULT1A1 6817 16 28525015 NM_177530 NP_803566 A/G R213H minus 12675162 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32353 rs9282861 SULT1A1 6817 16 28525015 NM_177534 NP_803878 A/G R213H minus 12675162 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32354 rs9282861 SULT1A1 6817 16 28525015 NM_177534 NP_803878 A/G R213H minus 12675162 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32355 rs9282861 SULT1A1 6817 16 28525015 NM_177534 NP_803878 A/G R213H minus 12675162 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32356 rs9282861 SULT1A1 6817 16 28525015 NM_177534 NP_803878 A/G R213H minus 12675162 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32357 rs9282861 SULT1A1 6817 16 28525015 NM_177534 NP_803878 A/G R213H minus 12675162 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32358 rs9282861 SULT1A1 6817 16 28525015 NM_177536 NP_803880 A/G R135H minus 12675162 754 SNP500CANCER P1 "African / African-Americans (24), Caucasians (31), Hispanics (23), Pacific Rim (24)" 204 0.17 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32359 rs9282861 SULT1A1 6817 16 28525015 NM_177536 NP_803880 A/G R135H minus 12675162 775 SNP500CANCER CAUC1 Caucasian (31) 62 0.24 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32360 rs9282861 SULT1A1 6817 16 28525015 NM_177536 NP_803880 A/G R135H minus 12675162 776 SNP500CANCER AFR1 African / African-American (24) 48 0.15 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32361 rs9282861 SULT1A1 6817 16 28525015 NM_177536 NP_803880 A/G R135H minus 12675162 777 SNP500CANCER HISP1 Hispanic (23) 46 0.22 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32362 rs9282861 SULT1A1 6817 16 28525015 NM_177536 NP_803880 A/G R135H minus 12675162 778 SNP500CANCER PAC1 Pacific Rim (24) 48 0.04 118 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1" 32363 rs9283633 SI 6476 3 166265867 NM_001041 NP_001032 C/T T231A plus 13480520 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.33 121 "HapMap,doubleHit,freq,cluster" 3q25.2-q26.2 sucrase-isomaltase (alpha-glucosidase) 32364 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 14889099 901 AFFY AfAm 12 0.25 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32365 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 14889099 902 AFFY Caucasian 24 0.08 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32366 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 14889099 903 AFFY Asian 12 0.33 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32367 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 14889099 904 AFFY CEPH 12 0.08 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32368 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 14889099 905 AFFY PDpanel 48 0.21 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32369 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 23291931 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32370 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 23291931 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32371 rs9288513 PECR 55825 2 216729525 NM_018441 NP_060911 A/T F297L plus 23291931 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 2q35 peroxisomal trans-2-enoyl-CoA reductase 32372 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 12709524 693 EGP_SNPS PDR90 NIHPDR 178 0.01 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32373 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 14870537 901 AFFY AfAm 12 1 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32374 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 14870537 902 AFFY Caucasian 24 1 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32375 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 14870537 903 AFFY Asian 12 1 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32376 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 14870537 904 AFFY CEPH 12 1 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32377 rs9296419 POLH 5429 6 43689563 NM_006502 NP_006493 C/T T478M plus 14870537 905 AFFY PDpanel 48 0.04 119 "by cluster,freq" 6p21.1 "polymerase (DNA directed), eta" 32378 rs9296669 PKHD1 5314 6 51998782 NM_138694 NP_619639 A/G A1262V plus 24689527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32379 rs9296669 PKHD1 5314 6 51998782 NM_138694 NP_619639 A/G A1262V plus 24689527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32380 rs9296669 PKHD1 5314 6 51998782 NM_138694 NP_619639 A/G A1262V plus 24689527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32381 rs9296669 PKHD1 5314 6 51998782 NM_170724 NP_733842 A/G A1262V plus 24689527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32382 rs9296669 PKHD1 5314 6 51998782 NM_170724 NP_733842 A/G A1262V plus 24689527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32383 rs9296669 PKHD1 5314 6 51998782 NM_170724 NP_733842 A/G A1262V plus 24689527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 6p12.2 polycystic kidney and hepatic disease 1 (autosomal recessive) 32384 rs9297605 TAF2 6873 8 120872818 NM_003184 NP_003175 C/G S447T plus 24411593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 32385 rs9297605 TAF2 6873 8 120872818 NM_003184 NP_003175 C/G S447T plus 24411593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 32386 rs9297605 TAF2 6873 8 120872818 NM_003184 NP_003175 C/G S447T plus 24411593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 32387 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 14900369 901 AFFY AfAm 12 0.33 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32388 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 14900369 902 AFFY Caucasian 24 0.08 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32389 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 14900369 903 AFFY Asian 12 0.08 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32390 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 14900369 904 AFFY CEPH 10 1 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32391 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 14900369 905 AFFY PDpanel 46 0.13 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32392 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 23476943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32393 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 23476943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32394 rs9297853 LRRC6 23639 8 133653740 NM_012472 NP_036604 A/G I466T plus 23476943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 8q24.22 testis specific leucine rich repeat protein 32395 rs9298814 IFNA17 3451 9 21217622 NM_021268 NP_067091 G/T I184R minus 12709272 683 O_LEUT HUTTERITE USA Caucasians (German ancestry) 1386 0.18 123 "by doubleHit,freq,cluster" 9p22 "interferon, alpha 17" 32396 rs9298814 IFNA17 3451 9 21217622 NM_021268 NP_067091 G/T I184R minus 24812379 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 "by doubleHit,freq,cluster" 9p22 "interferon, alpha 17" 32397 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 14881391 901 AFFY AfAm 12 0.42 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32398 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 14881391 902 AFFY Caucasian 24 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32399 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 14881391 903 AFFY Asian 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32400 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 14881391 904 AFFY CEPH 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32401 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 14881391 905 AFFY PDpanel 46 0.02 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32402 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 23479052 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32403 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 23479052 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32404 rs9302870 ZNF200 7752 16 3222469 NM_003454 NP_003445 A/G T140M plus 23479052 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32405 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 14881391 901 AFFY AfAm 12 0.42 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32406 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 14881391 902 AFFY Caucasian 24 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32407 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 14881391 903 AFFY Asian 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32408 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 14881391 904 AFFY CEPH 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32409 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 14881391 905 AFFY PDpanel 46 0.02 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32410 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 23479052 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32411 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 23479052 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32412 rs9302870 ZNF200 7752 16 3222469 NM_198087 NP_932353 A/G T139M plus 23479052 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32413 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 14881391 901 AFFY AfAm 12 0.42 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32414 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 14881391 902 AFFY Caucasian 24 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32415 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 14881391 903 AFFY Asian 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32416 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 14881391 904 AFFY CEPH 12 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32417 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 14881391 905 AFFY PDpanel 46 0.02 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32418 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 23479052 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32419 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 23479052 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32420 rs9302870 ZNF200 7752 16 3222469 NM_198088 NP_932354 A/G T140M plus 23479052 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 16p13.3 zinc finger protein 200 32421 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 14911250 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32422 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 14911250 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32423 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 14911250 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32424 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 14911250 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32425 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 14911250 905 AFFY PDpanel 48 0.1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32426 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 23638673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32427 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 23638673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32428 rs9302912 KCNJ16 3773 17 65639854 NM_018658 NP_061128 A/G I11V plus 23638673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32429 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 14911250 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32430 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 14911250 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32431 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 14911250 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32432 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 14911250 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32433 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 14911250 905 AFFY PDpanel 48 0.1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32434 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 23638673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32435 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 23638673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32436 rs9302912 KCNJ16 3773 17 65639854 NM_170741 NP_733937 A/G I11V plus 23638673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32437 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 14911250 901 AFFY AfAm 12 0.08 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32438 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 14911250 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32439 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 14911250 903 AFFY Asian 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32440 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 14911250 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32441 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 14911250 905 AFFY PDpanel 48 0.1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32442 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 23638673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32443 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 23638673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32444 rs9302912 KCNJ16 3773 17 65639854 NM_170742 NP_733938 A/G I11V plus 23638673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 17q23.1-q24.2 "potassium inwardly-rectifying channel, subfamily J, member 16" 32445 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 13738514 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32446 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 14911049 901 AFFY AfAm 12 0.42 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32447 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 14911049 902 AFFY Caucasian 16 0.38 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32448 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 14911049 903 AFFY Asian 10 0.1 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32449 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 14911049 904 AFFY CEPH 6 0.5 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32450 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 14911049 905 AFFY PDpanel 46 0.39 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32451 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 23639527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32452 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 23639527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32453 rs9303634 WSB1 26118 17 22652947 NM_015626 NP_056441 C/T L16S plus 23639527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32454 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 13738514 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.43 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32455 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 14911049 901 AFFY AfAm 12 0.42 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32456 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 14911049 902 AFFY Caucasian 16 0.38 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32457 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 14911049 903 AFFY Asian 10 0.1 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32458 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 14911049 904 AFFY CEPH 6 0.5 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32459 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 14911049 905 AFFY PDpanel 46 0.39 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32460 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 23639527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32461 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 23639527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32462 rs9303634 WSB1 26118 17 22652947 NM_134264 NP_599026 C/T L16S plus 23639527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 17q11.2 WD repeat and SOCS box-containing 1 32463 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 14867081 901 AFFY AfAm 12 1 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32464 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 14867081 902 AFFY Caucasian 24 0.25 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32465 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 14867081 903 AFFY Asian 12 1 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32466 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 14867081 904 AFFY CEPH 6 0.5 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32467 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 14867081 905 AFFY PDpanel 48 0.04 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32468 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 24700974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32469 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 24700974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32470 rs9306198 BCL2L13 23786 22 16584474 NM_015367 NP_056182 C/T P360S plus 24700974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 32471 rs9309107 D2LIC 51626 2 43933477 NM_015522 NP_056337 A/T F184Y plus 23715637 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 32472 rs9309107 D2LIC 51626 2 43933477 NM_015522 NP_056337 A/T F184Y plus 23715637 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 32473 rs9309107 D2LIC 51626 2 43933477 NM_015522 NP_056337 A/T F184Y plus 23715637 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 2p25.1-p24.1 dynein 2 light intermediate chain 32474 rs9311440 USP4 7375 3 49306868 NM_003363 NP_003354 C/T Y620C plus 23202475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32475 rs9311440 USP4 7375 3 49306868 NM_003363 NP_003354 C/T Y620C plus 23202475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32476 rs9311440 USP4 7375 3 49306868 NM_003363 NP_003354 C/T Y620C plus 23202475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32477 rs9311440 USP4 7375 3 49306868 NM_199443 NP_955475 C/T Y573C plus 23202475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32478 rs9311440 USP4 7375 3 49306868 NM_199443 NP_955475 C/T Y573C plus 23202475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32479 rs9311440 USP4 7375 3 49306868 NM_199443 NP_955475 C/T Y573C plus 23202475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.3 ubiquitin specific protease 4 (proto-oncogene) 32480 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 14902830 901 AFFY AfAm 12 1 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32481 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 14902830 902 AFFY Caucasian 24 1 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32482 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 14902830 903 AFFY Asian 12 0.08 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32483 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 14902830 904 AFFY CEPH 12 1 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32484 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 14902830 905 AFFY PDpanel 48 0.04 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32485 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 24445498 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32486 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 24445498 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32487 rs9318600 ADPRTL1 143 13 23966808 NM_006437 NP_006428 A/T F215Y plus 24445498 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32488 rs9323183 CDKL1 8814 14 49866631 NM_004196 NP_004187 C/G L330V plus 16342989 693 EGP_SNPS PDR90 NIHPDR 178 0.02 120 "by cluster,freq" 14q22.1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 32489 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 14889434 901 AFFY AfAm 12 1 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32490 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 14889434 902 AFFY Caucasian 24 0.04 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32491 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 14889434 903 AFFY Asian 12 0.08 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32492 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 14889434 904 AFFY CEPH 12 1 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32493 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 14889434 905 AFFY PDpanel 48 0.04 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32494 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 24720740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32495 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 24720740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32496 rs9323693 OR11H6 122748 14 19761802 XM_063315 XP_063315 C/G L32V plus 24720740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 32497 rs9324700 FAT2 2196 5 150926629 NM_001447 NP_001438 A/G F686S plus 24686768 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.48 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 32498 rs9324700 FAT2 2196 5 150926629 NM_001447 NP_001438 A/G F686S plus 24686768 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.4 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 32499 rs9324700 FAT2 2196 5 150926629 NM_001447 NP_001438 A/G F686S plus 24686768 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.32 123 "by doubleHit,freq,cluster" 5q32-q33 FAT tumor suppressor homolog 2 (Drosophila) 32500 rs9325593 SNCG 6623 10 88712378 NM_003087 NP_003078 A/T E110V plus 24647118 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq" 10q23.2-q23.3 "synuclein, gamma (breast cancer-specific protein 1)" 32501 rs9325593 SNCG 6623 10 88712378 NM_003087 NP_003078 A/T E110V plus 24647118 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq" 10q23.2-q23.3 "synuclein, gamma (breast cancer-specific protein 1)" 32502 rs9325593 SNCG 6623 10 88712378 NM_003087 NP_003078 A/T E110V plus 24647118 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq" 10q23.2-q23.3 "synuclein, gamma (breast cancer-specific protein 1)" 32503 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 14875396 901 AFFY AfAm 12 0.33 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32504 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 14875396 902 AFFY Caucasian 24 0.13 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32505 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 14875396 903 AFFY Asian 6 0.5 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32506 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 14875396 904 AFFY CEPH 12 0.08 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32507 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 14875396 905 AFFY PDpanel 48 0.33 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32508 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 23242065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32509 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 23242065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32510 rs9328764 POLN 353497 4 2143685 NM_181808 NP_861524 A/G R425C plus 23242065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 4p16.3 polymerase (DNA directed) nu 32511 rs9331936 CLU 1191 8 27513429 NM_001831 NP_001822 A/C N369H minus 12588265 693 EGP_SNPS PDR90 NIHPDR 178 0.07 119 by freq 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32512 rs9331936 CLU 1191 8 27513429 NM_203339 NP_976084 A/C N317H minus 12588265 693 EGP_SNPS PDR90 NIHPDR 178 0.07 119 by freq 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32513 rs9331938 CLU 1191 8 27513396 NM_001831 NP_001822 A/G D380N minus 12588267 693 EGP_SNPS PDR90 NIHPDR 180 0.02 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32514 rs9331938 CLU 1191 8 27513396 NM_001831 NP_001822 A/G D380N minus 23576114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32515 rs9331938 CLU 1191 8 27513396 NM_001831 NP_001822 A/G D380N minus 23576114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32516 rs9331938 CLU 1191 8 27513396 NM_001831 NP_001822 A/G D380N minus 23576114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32517 rs9331938 CLU 1191 8 27513396 NM_203339 NP_976084 A/G D328N minus 12588267 693 EGP_SNPS PDR90 NIHPDR 180 0.02 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32518 rs9331938 CLU 1191 8 27513396 NM_203339 NP_976084 A/G D328N minus 23576114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32519 rs9331938 CLU 1191 8 27513396 NM_203339 NP_976084 A/G D328N minus 23576114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32520 rs9331938 CLU 1191 8 27513396 NM_203339 NP_976084 A/G D328N minus 23576114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32521 rs9331940 CLU 1191 8 27512047 NM_001831 NP_001822 C/T S448L minus 12588270 693 EGP_SNPS PDR90 NIHPDR 150 0.01 119 by freq 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32522 rs9331940 CLU 1191 8 27512047 NM_203339 NP_976084 C/T S396L minus 12588270 693 EGP_SNPS PDR90 NIHPDR 150 0.01 119 by freq 8p21-p12 "clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)" 32523 rs9332485 F5 2153 1 166287240 NM_000130 NP_000121 A/G G15S minus 12674091 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 38 0.05 119 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 32524 rs9332608 F5 2153 1 166241776 NM_000130 NP_000121 C/T P1404S minus 12674302 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 119 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 32525 rs9332608 F5 2153 1 166241776 NM_000130 NP_000121 C/T P1404S minus 12674302 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 119 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 32526 rs9332695 F5 2153 1 166243243 NM_000130 NP_000121 A/T T915S minus 12674424 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.07 119 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 32527 rs9332701 F5 2153 1 166216425 NM_000130 NP_000121 C/T M2148T minus 12674431 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.05 119 by freq 1q23 "coagulation factor V (proaccelerin, labile factor)" 32528 rs9332739 C2 717 6 32011783 NM_000063 NP_000054 C/G E318D plus 12674494 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 119 by freq 6p21.3 complement component 2 32529 rs9332745 MLL 4297 11 117812526 NM_005933 NP_005924 C/G A30G plus 12674503 693 EGP_SNPS PDR90 NIHPDR 154 0.03 119 by freq 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 32530 rs9332747 MLL 4297 11 117812595 NM_005933 NP_005924 C/T A53V plus 12674505 693 EGP_SNPS PDR90 NIHPDR 172 0.03 119 by freq 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 32531 rs9332838 MLL 4297 11 117878887 NM_005933 NP_005924 C/G P2354R plus 12674611 693 EGP_SNPS PDR90 NIHPDR 178 0.01 119 by freq 11q23 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)" 32532 rs9333174 ITGA8 8516 10 15674278 XM_167711 XP_167711 A/G R878H minus 12675972 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32533 rs9333174 ITGA8 8516 10 15674278 XM_167711 XP_167711 A/G R878H minus 16361827 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32534 rs9333241 ITGA8 8516 10 15613060 XM_167711 XP_167711 A/G I1123V minus 12676054 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32535 rs9333241 ITGA8 8516 10 15613060 XM_167711 XP_167711 A/G I1123V minus 16361874 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.05 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32536 rs9333269 ITGA8 8516 10 15689704 XM_167711 XP_167711 A/C Q711P minus 12676090 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32537 rs9333269 ITGA8 8516 10 15689704 XM_167711 XP_167711 A/C Q711P minus 16361675 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.07 120 "by cluster,freq" 10p13 "integrin, alpha 8" 32538 rs9333554 POLH 5429 6 43689881 NM_006502 NP_006493 C/T L584P plus 12709526 693 EGP_SNPS PDR90 NIHPDR 160 0.01 119 by freq 6p21.1 "polymerase (DNA directed), eta" 32539 rs9333555 POLH 5429 6 43689913 NM_006502 NP_006493 A/G M595V plus 12709527 693 EGP_SNPS PDR90 NIHPDR 160 0.03 119 by freq 6p21.1 "polymerase (DNA directed), eta" 32540 rs9353689 MDN1 23195 6 90447164 NM_014611 NP_055426 A/C A4044S plus 12805748 885 TSC-CSHL HapMap-CEPH-30-trios 110 0.42 121 "HapMap,doubleHit,freq,cluster" 6q15 "MDN1, midasin homolog (yeast)" 32541 rs9357410 ZNF318 24149 6 43430442 NM_014345 NP_055160 C/G L690V plus 12814227 885 TSC-CSHL HapMap-CEPH-30-trios 112 1 119 HapMap 6pter-p12.1 zinc finger protein 318 32542 rs9369265 TLT4 285852 6 41304583 NM_198153 NP_937796 C/T W73R plus 23352298 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 32543 rs9369265 TLT4 285852 6 41304583 NM_198153 NP_937796 C/T W73R plus 23352298 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 32544 rs9369265 TLT4 285852 6 41304583 NM_198153 NP_937796 C/T W73R plus 23352298 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p21.1 TREM-like transcript 4 32545 rs9369738 GPR115 221393 6 47790563 NM_153838 NP_722580 A/C K598N plus 23335395 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 115 32546 rs9369738 GPR115 221393 6 47790563 NM_153838 NP_722580 A/C K598N plus 23335395 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 115 32547 rs9369738 GPR115 221393 6 47790563 NM_153838 NP_722580 A/C K598N plus 23335395 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 115 32548 rs9373475 FBXO30 84085 6 146168112 NM_032145 NP_115521 C/T V375M plus 24413054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 32549 rs9373475 FBXO30 84085 6 146168112 NM_032145 NP_115521 C/T V375M plus 24413054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 32550 rs9373475 FBXO30 84085 6 146168112 NM_032145 NP_115521 C/T V375M plus 24413054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6q24 F-box protein 30 32551 rs9373985 FHL5 9457 6 97170243 NM_020482 NP_065228 C/G S243R plus 23369363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 32552 rs9373985 FHL5 9457 6 97170243 NM_020482 NP_065228 C/G S243R plus 23369363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 32553 rs9373985 FHL5 9457 6 97170243 NM_020482 NP_065228 C/G S243R plus 23369363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 6q16.1-q16.3 four and a half LIM domains 5 32554 rs9380030 OR2B6 26212 6 28033806 NM_012367 NP_036499 A/G Q270R plus 12864330 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "olfactory receptor, family 2, subfamily B, member 6" 32555 rs9380030 OR2B6 26212 6 28033806 NM_012367 NP_036499 A/G Q270R plus 23960496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "olfactory receptor, family 2, subfamily B, member 6" 32556 rs9380030 OR2B6 26212 6 28033806 NM_012367 NP_036499 A/G Q270R plus 23960496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "olfactory receptor, family 2, subfamily B, member 6" 32557 rs9380030 OR2B6 26212 6 28033806 NM_012367 NP_036499 A/G Q270R plus 23960496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 6p21.3 "olfactory receptor, family 2, subfamily B, member 6" 32558 rs9381594 GPR111 222611 6 47757653 NM_153839 NP_722581 A/G I467V plus 23334554 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 32559 rs9381594 GPR111 222611 6 47757653 NM_153839 NP_722581 A/G I467V plus 23334554 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 32560 rs9381594 GPR111 222611 6 47757653 NM_153839 NP_722581 A/G I467V plus 23334554 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12.3 G protein-coupled receptor 111 32561 rs9382658 DST 667 6 56579361 NM_020388 NP_065121 A/G P2138L plus 23348342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 32562 rs9382658 DST 667 6 56579361 NM_020388 NP_065121 A/G P2138L plus 23348342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 32563 rs9382658 DST 667 6 56579361 NM_020388 NP_065121 A/G P2138L plus 23348342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 32564 rs9383583 RAET1E 135250 6 150304117 NM_139165 NP_631904 C/T R12H plus 24037180 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 32565 rs9383583 RAET1E 135250 6 150304117 NM_139165 NP_631904 C/T R12H plus 24037180 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 32566 rs9383583 RAET1E 135250 6 150304117 NM_139165 NP_631904 C/T R12H plus 24037180 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 6q24.3 retinoic acid early transcript 1E 32567 rs9388768 L3MBTL3 84456 6 130415795 XM_027074 XP_027074 A/C T183N plus 24402795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by doubleHit,freq" 6q23 l(3)mbt-like 3 (Drosophila) 32568 rs9388768 L3MBTL3 84456 6 130415795 XM_027074 XP_027074 A/C T183N plus 24402795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq" 6q23 l(3)mbt-like 3 (Drosophila) 32569 rs9388768 L3MBTL3 84456 6 130415795 XM_027074 XP_027074 A/C T183N plus 24402795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq" 6q23 l(3)mbt-like 3 (Drosophila) 32570 rs9390698 HELIC1 10973 6 101403110 NM_006828 NP_006819 A/G L146F plus 24378963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 6q16 "helicase, ATP binding 1" 32571 rs9390698 HELIC1 10973 6 101403110 NM_006828 NP_006819 A/G L146F plus 24378963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 6q16 "helicase, ATP binding 1" 32572 rs9390698 HELIC1 10973 6 101403110 NM_006828 NP_006819 A/G L146F plus 24378963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 6q16 "helicase, ATP binding 1" 32573 rs9395218 GPR116 221395 6 46935198 NM_015234 NP_056049 C/T V801I plus 24001706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 6p21.1 G protein-coupled receptor 116 32574 rs9395218 GPR116 221395 6 46935198 NM_015234 NP_056049 C/T V801I plus 24001706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 6p21.1 G protein-coupled receptor 116 32575 rs9395218 GPR116 221395 6 46935198 NM_015234 NP_056049 C/T V801I plus 24001706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 6p21.1 G protein-coupled receptor 116 32576 rs9416746 BICC1 80114 10 60243759 XM_498431 XP_498431 G/T R473L plus 24502765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 10q21.3 bicaudal C homolog 1 (Drosophila) 32577 rs9416746 BICC1 80114 10 60243759 XM_498431 XP_498431 G/T R473L plus 24502765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 10q21.3 bicaudal C homolog 1 (Drosophila) 32578 rs9416746 BICC1 80114 10 60243759 XM_498431 XP_498431 G/T R473L plus 24502765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q21.3 bicaudal C homolog 1 (Drosophila) 32579 rs9449444 IBTK 25998 6 82957530 XM_371835 XP_371835 A/G A1185V plus 24485758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq" 6q14.3 inhibitor of Bruton agammaglobulinemia tyrosine kinase 32580 rs9449444 IBTK 25998 6 82957530 XM_371835 XP_371835 A/G A1185V plus 24485758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq" 6q14.3 inhibitor of Bruton agammaglobulinemia tyrosine kinase 32581 rs9449444 IBTK 25998 6 82957530 XM_371835 XP_371835 A/G A1185V plus 24485758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq" 6q14.3 inhibitor of Bruton agammaglobulinemia tyrosine kinase 32582 rs9462088 FANCE 2178 6 35538664 NM_021922 NP_068741 A/G A502T plus 23720125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6p21-p22 "Fanconi anemia, complementation group E" 32583 rs9462088 FANCE 2178 6 35538664 NM_021922 NP_068741 A/G A502T plus 23720125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by cluster,freq" 6p21-p22 "Fanconi anemia, complementation group E" 32584 rs9462088 FANCE 2178 6 35538664 NM_021922 NP_068741 A/G A502T plus 23720125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 6p21-p22 "Fanconi anemia, complementation group E" 32585 rs9469203 HLA-DQA1 3117 6 32713244 NM_002122 NP_002113 A/G A11T plus 24816025 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 "by doubleHit,freq,cluster" 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 32586 rs9473558 MUT 4594 6 49520392 NM_000255 NP_000246 C/T R532H plus 24315860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq" 6p21 methylmalonyl Coenzyme A mutase 32587 rs9473558 MUT 4594 6 49520392 NM_000255 NP_000246 C/T R532H plus 24315860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq" 6p21 methylmalonyl Coenzyme A mutase 32588 rs9473558 MUT 4594 6 49520392 NM_000255 NP_000246 C/T R532H plus 24315860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq" 6p21 methylmalonyl Coenzyme A mutase 32589 rs9486039 BVES 11149 6 105680117 NM_007073 NP_009004 C/T M127I plus 13125192 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 119 "HapMap,doubleHit" 6q21 blood vessel epicardial substance 32590 rs9486039 BVES 11149 6 105680117 NM_147147 NP_671488 C/T M127I plus 13125192 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 119 "HapMap,doubleHit" 6q21 blood vessel epicardial substance 32591 rs9488991 RSHL3 345895 6 117058371 XM_496824 XP_496824 A/C N627H plus 23399454 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 32592 rs9488991 RSHL3 345895 6 117058371 XM_496824 XP_496824 A/C N627H plus 23399454 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 32593 rs9488991 RSHL3 345895 6 117058371 XM_496824 XP_496824 A/C N627H plus 23399454 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6q22.31 radial spokehead-like 3 32594 rs9493627 EYA4 2070 6 133831421 NM_004100 NP_004091 A/G G277S plus 23945513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32595 rs9493627 EYA4 2070 6 133831421 NM_004100 NP_004091 A/G G277S plus 23945513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32596 rs9493627 EYA4 2070 6 133831421 NM_004100 NP_004091 A/G G277S plus 23945513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32597 rs9493627 EYA4 2070 6 133831421 NM_172105 NP_742103 A/G G277S plus 23945513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32598 rs9493627 EYA4 2070 6 133831421 NM_172105 NP_742103 A/G G277S plus 23945513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32599 rs9493627 EYA4 2070 6 133831421 NM_172105 NP_742103 A/G G277S plus 23945513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 6q23 eyes absent homolog 4 (Drosophila) 32600 rs9507425 TDRD4 54513 13 24338318 NM_019038 NP_061911 A/G E527K plus 24448373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 by freq 13q12.13 tudor domain containing 4 32601 rs9507425 TDRD4 54513 13 24338318 NM_019038 NP_061911 A/G E527K plus 24448373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 13q12.13 tudor domain containing 4 32602 rs9507425 TDRD4 54513 13 24338318 NM_019038 NP_061911 A/G E527K plus 24448373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.24 123 by freq 13q12.13 tudor domain containing 4 32603 rs9509307 TTC10 8100 13 20103192 NM_006531 NP_006522 A/G S446N plus 23410465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32604 rs9509307 TTC10 8100 13 20103192 NM_006531 NP_006522 A/G S446N plus 23410465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32605 rs9509307 TTC10 8100 13 20103192 NM_006531 NP_006522 A/G S446N plus 23410465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32606 rs9509307 TTC10 8100 13 20103192 NM_175605 NP_783195 A/G S455N plus 23410465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32607 rs9509307 TTC10 8100 13 20103192 NM_175605 NP_783195 A/G S455N plus 23410465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32608 rs9509307 TTC10 8100 13 20103192 NM_175605 NP_783195 A/G S455N plus 23410465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q12.1 tetratricopeptide repeat domain 10 32609 rs9511510 CENPJ 55835 13 24384911 NM_018451 NP_060921 G/T P85T plus 24448780 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq" 13q12.13 centromere protein J 32610 rs9511510 CENPJ 55835 13 24384911 NM_018451 NP_060921 G/T P85T plus 24448780 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 13q12.13 centromere protein J 32611 rs9511510 CENPJ 55835 13 24384911 NM_018451 NP_060921 G/T P85T plus 24448780 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 13q12.13 centromere protein J 32612 rs9516771 HS6ST3 266722 13 96282831 NM_153456 NP_703157 A/G K265R plus 13180074 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 119 "HapMap,freq" 13q32.2 heparan sulfate 6-O-sulfotransferase 3 32613 rs9532758 MTRF1 9617 13 40733039 NM_004294 NP_004285 C/T N2S plus 23723247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 13q14.1-q14.3 mitochondrial translational release factor 1 32614 rs9532758 MTRF1 9617 13 40733039 NM_004294 NP_004285 C/T N2S plus 23723247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 13q14.1-q14.3 mitochondrial translational release factor 1 32615 rs9532758 MTRF1 9617 13 40733039 NM_004294 NP_004285 C/T N2S plus 23723247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 13q14.1-q14.3 mitochondrial translational release factor 1 32616 rs9536314 KL 9365 13 32526138 NM_004795 NP_004786 G/T F352V plus 23516134 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 13q12 klotho 32617 rs9536314 KL 9365 13 32526138 NM_004795 NP_004786 G/T F352V plus 23516134 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 13q12 klotho 32618 rs9536314 KL 9365 13 32526138 NM_004795 NP_004786 G/T F352V plus 23516134 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 13q12 klotho 32619 rs9536314 KL 9365 13 32526138 NM_153683 NP_710150 G/T F352V plus 23516134 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 13q12 klotho 32620 rs9536314 KL 9365 13 32526138 NM_153683 NP_710150 G/T F352V plus 23516134 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 13q12 klotho 32621 rs9536314 KL 9365 13 32526138 NM_153683 NP_710150 G/T F352V plus 23516134 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by doubleHit,freq,cluster" 13q12 klotho 32622 rs9550987 TNFRSF19 55504 13 23065505 NM_018647 NP_061117 A/T S31T plus 23424507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32623 rs9550987 TNFRSF19 55504 13 23065505 NM_018647 NP_061117 A/T S31T plus 23424507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32624 rs9550987 TNFRSF19 55504 13 23065505 NM_018647 NP_061117 A/T S31T plus 23424507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32625 rs9550987 TNFRSF19 55504 13 23065505 NM_148957 NP_683760 A/T S31T plus 23424507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32626 rs9550987 TNFRSF19 55504 13 23065505 NM_148957 NP_683760 A/T S31T plus 23424507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32627 rs9550987 TNFRSF19 55504 13 23065505 NM_148957 NP_683760 A/T S31T plus 23424507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 13q12.11-q12.3 "tumor necrosis factor receptor superfamily, member 19" 32628 rs9568497 GUCY1B2 2974 13 50501769 NM_004129 NP_004120 C/T Y55C plus 23343600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 32629 rs9568497 GUCY1B2 2974 13 50501769 NM_004129 NP_004120 C/T Y55C plus 23343600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 32630 rs9568497 GUCY1B2 2974 13 50501769 NM_004129 NP_004120 C/T Y55C plus 23343600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 32631 rs9576175 CSNK1A1L 122011 13 36577268 NM_145203 NP_660204 G/T D42E plus 23391652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 13q13.2 "casein kinase 1, alpha 1-like" 32632 rs9576175 CSNK1A1L 122011 13 36577268 NM_145203 NP_660204 G/T D42E plus 23391652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 13q13.2 "casein kinase 1, alpha 1-like" 32633 rs9576175 CSNK1A1L 122011 13 36577268 NM_145203 NP_660204 G/T D42E plus 23391652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by doubleHit,freq,cluster" 13q13.2 "casein kinase 1, alpha 1-like" 32634 rs9578751 ADPRTL1 143 13 23972490 NM_006437 NP_006428 C/T S122N plus 24445590 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32635 rs9578751 ADPRTL1 143 13 23972490 NM_006437 NP_006428 C/T S122N plus 24445590 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32636 rs9578751 ADPRTL1 143 13 23972490 NM_006437 NP_006428 C/T S122N plus 24445590 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 32637 rs9594182 ALG5 29880 13 36444114 NM_013338 NP_037470 C/G Q207H plus 13327164 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 13q13.2 "asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)" 32638 rs9606739 SEC14L4 284904 22 29215848 NM_174977 NP_777637 C/G R124G plus 24587801 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 32639 rs9606739 SEC14L4 284904 22 29215848 NM_174977 NP_777637 C/G R124G plus 24587801 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 32640 rs9606739 SEC14L4 284904 22 29215848 NM_174977 NP_777637 C/G R124G plus 24587801 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 32641 rs9606756 TCN2 6948 22 29331414 NM_000355 NP_000346 A/G I23V plus 23631087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 22q12.2 transcobalamin II; macrocytic anemia 32642 rs9606756 TCN2 6948 22 29331414 NM_000355 NP_000346 A/G I23V plus 23631087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 22q12.2 transcobalamin II; macrocytic anemia 32643 rs9606756 TCN2 6948 22 29331414 NM_000355 NP_000346 A/G I23V plus 23631087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q12.2 transcobalamin II; macrocytic anemia 32644 rs9608378 CRYBB3 1417 22 23925750 NM_004076 NP_004067 C/G H113D plus 23617338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 22q11.23 "crystallin, beta B3" 32645 rs9608378 CRYBB3 1417 22 23925750 NM_004076 NP_004067 C/G H113D plus 23617338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 22q11.23 "crystallin, beta B3" 32646 rs9608378 CRYBB3 1417 22 23925750 NM_004076 NP_004067 C/G H113D plus 23617338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 22q11.23 "crystallin, beta B3" 32647 rs9608956 SEC14L4 284904 22 29226146 NM_174977 NP_777637 C/T S3G plus 23630492 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 4 (S. cerevisiae) 32648 rs9608956 SEC14L4 284904 22 29226146 NM_174977 NP_777637 C/T S3G plus 23630492 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 4 (S. cerevisiae) 32649 rs9608956 SEC14L4 284904 22 29226146 NM_174977 NP_777637 C/T S3G plus 23630492 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 22q12.2 SEC14-like 4 (S. cerevisiae) 32650 rs9610875 MIRAB13 85377 22 36648007 NM_033386 NP_203744 G/T A519S plus 20139884 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.3 120 "HapMap,doubleHit,freq,cluster" 22q13.1-q13.2 molecule interacting with Rab13 32651 rs9614653 SMC1L2 27127 22 44087928 NM_148674 NP_683515 C/T R758Q plus 19497612 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,doubleHit,freq,cluster" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 32652 rs9614653 SMC1L2 27127 22 44087928 NM_148674 NP_683515 C/T R758Q plus 24106075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 32653 rs9614653 SMC1L2 27127 22 44087928 NM_148674 NP_683515 C/T R758Q plus 24106075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "HapMap,doubleHit,freq,cluster" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 32654 rs9614653 SMC1L2 27127 22 44087928 NM_148674 NP_683515 C/T R758Q plus 24106075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "HapMap,doubleHit,freq,cluster" 22q13.31 SMC1 structural maintenance of chromosomes 1-like 2 (yeast) 32655 rs9616915 SHANK3 85358 22 49407724 XM_037493 XP_037493 C/T I275T plus 21839993 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,doubleHit,freq" 22q13.3 SH3 and multiple ankyrin repeat domains 3 32656 rs9624909 MYO18B 84700 22 24547008 NM_032608 NP_115997 C/T S925L plus 23622904 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 32657 rs9624909 MYO18B 84700 22 24547008 NM_032608 NP_115997 C/T S925L plus 23622904 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 32658 rs9624909 MYO18B 84700 22 24547008 NM_032608 NP_115997 C/T S925L plus 23622904 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 22q11.2-q12.1 myosin XVIIIB 32659 rs9636845 KRTAP11-1 337880 21 31175384 NM_175858 NP_787054 A/T C111S plus 13413698 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.1 119 "HapMap,freq" 21q22.1 keratin associated protein 11-1 32660 rs9640663 PTPN12 5782 7 76892472 NM_002835 NP_002826 A/G V322I plus 24444534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 32661 rs9640663 PTPN12 5782 7 76892472 NM_002835 NP_002826 A/G V322I plus 24444534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 32662 rs9640663 PTPN12 5782 7 76892472 NM_002835 NP_002826 A/G V322I plus 24444534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 7q11.23 "protein tyrosine phosphatase, non-receptor type 12" 32663 rs9656982 SLC7A13 157724 8 87295816 NM_138817 NP_620172 A/G M452T plus 23477465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 32664 rs9656982 SLC7A13 157724 8 87295816 NM_138817 NP_620172 A/G M452T plus 23477465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 32665 rs9656982 SLC7A13 157724 8 87295816 NM_138817 NP_620172 A/G M452T plus 23477465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 8q21.2 "solute carrier family 7, (cationic amino acid transporter, y+ system) member 13" 32666 rs9657979 TNFRSF9 3604 1 7929356 NM_001561 NP_001552 A/C A176D minus 13452250 693 EGP_SNPS PDR90 NIHPDR 176 0.01 119 by freq 1p36 "tumor necrosis factor receptor superfamily, member 9" 32667 rs9658625 SOAT2 8435 12 51783669 NM_003578 NP_003569 A/G E14G plus 13453036 693 EGP_SNPS PDR90 NIHPDR 162 0.12 119 by freq 12q13.13 sterol O-acyltransferase 2 32668 rs9658654 CHGA 1113 14 92467518 NM_001275 NP_001266 A/G E176K plus 13453072 1067 BAH EURO European 104 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32669 rs9658654 CHGA 1113 14 92467518 NM_001275 NP_001266 A/G E176K plus 13453072 1068 BAH AFRI African-American 114 0.05 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32670 rs9658654 CHGA 1113 14 92467518 NM_001275 NP_001266 A/G E176K plus 13453072 1069 BAH ASIA Asian 88 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32671 rs9658654 CHGA 1113 14 92467518 NM_001275 NP_001266 A/G E176K plus 13453072 1070 BAH HISP Hispanic 56 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32672 rs9658655 CHGA 1113 14 92467784 NM_001275 NP_001266 C/G E264D plus 13453073 1067 BAH EURO European 104 0.11 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32673 rs9658655 CHGA 1113 14 92467784 NM_001275 NP_001266 C/G E264D plus 13453073 1068 BAH AFRI African-American 114 0.24 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32674 rs9658655 CHGA 1113 14 92467784 NM_001275 NP_001266 C/G E264D plus 13453073 1069 BAH ASIA Asian 88 0.2 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32675 rs9658655 CHGA 1113 14 92467784 NM_001275 NP_001266 C/G E264D plus 13453073 1070 BAH HISP Hispanic 56 0.07 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32676 rs9658662 CHGA 1113 14 92468470 NM_001275 NP_001266 C/T R271W plus 13453081 1067 BAH EURO European 104 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32677 rs9658662 CHGA 1113 14 92468470 NM_001275 NP_001266 C/T R271W plus 13453081 1068 BAH AFRI African-American 114 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32678 rs9658662 CHGA 1113 14 92468470 NM_001275 NP_001266 C/T R271W plus 13453081 1069 BAH ASIA Asian 88 0.02 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32679 rs9658662 CHGA 1113 14 92468470 NM_001275 NP_001266 C/T R271W plus 13453081 1070 BAH HISP Hispanic 56 0.01 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32680 rs9658663 CHGA 1113 14 92468480 NM_001275 NP_001266 C/G A274G plus 13453082 1067 BAH EURO European 104 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32681 rs9658663 CHGA 1113 14 92468480 NM_001275 NP_001266 C/G A274G plus 13453082 1068 BAH AFRI African-American 114 0.01 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32682 rs9658663 CHGA 1113 14 92468480 NM_001275 NP_001266 C/G A274G plus 13453082 1069 BAH ASIA Asian 88 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32683 rs9658663 CHGA 1113 14 92468480 NM_001275 NP_001266 C/G A274G plus 13453082 1070 BAH HISP Hispanic 56 0.02 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32684 rs9658664 CHGA 1113 14 92468602 NM_001275 NP_001266 A/G G315S plus 13453083 1067 BAH EURO European 104 0.02 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32685 rs9658664 CHGA 1113 14 92468602 NM_001275 NP_001266 A/G G315S plus 13453083 1068 BAH AFRI African-American 114 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32686 rs9658664 CHGA 1113 14 92468602 NM_001275 NP_001266 A/G G315S plus 13453083 1069 BAH ASIA Asian 88 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32687 rs9658664 CHGA 1113 14 92468602 NM_001275 NP_001266 A/G G315S plus 13453083 1070 BAH HISP Hispanic 56 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32688 rs9658665 CHGA 1113 14 92468654 NM_001275 NP_001266 C/T L332P plus 13453084 1067 BAH EURO European 104 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32689 rs9658665 CHGA 1113 14 92468654 NM_001275 NP_001266 C/T L332P plus 13453084 1068 BAH AFRI African-American 114 0.05 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32690 rs9658665 CHGA 1113 14 92468654 NM_001275 NP_001266 C/T L332P plus 13453084 1069 BAH ASIA Asian 88 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32691 rs9658665 CHGA 1113 14 92468654 NM_001275 NP_001266 C/T L332P plus 13453084 1070 BAH HISP Hispanic 56 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32692 rs9658667 CHGA 1113 14 92468803 NM_001275 NP_001266 A/G G382S plus 13453086 1067 BAH EURO European 104 0.05 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32693 rs9658667 CHGA 1113 14 92468803 NM_001275 NP_001266 A/G G382S plus 13453086 1068 BAH AFRI African-American 114 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32694 rs9658667 CHGA 1113 14 92468803 NM_001275 NP_001266 A/G G382S plus 13453086 1069 BAH ASIA Asian 88 0.02 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32695 rs9658667 CHGA 1113 14 92468803 NM_001275 NP_001266 A/G G382S plus 13453086 1070 BAH HISP Hispanic 56 0.06 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32696 rs9658668 CHGA 1113 14 92468822 NM_001275 NP_001266 C/T P388L plus 13453087 1067 BAH EURO European 104 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32697 rs9658668 CHGA 1113 14 92468822 NM_001275 NP_001266 C/T P388L plus 13453087 1068 BAH AFRI African-American 114 0.02 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32698 rs9658668 CHGA 1113 14 92468822 NM_001275 NP_001266 C/T P388L plus 13453087 1069 BAH ASIA Asian 88 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32699 rs9658668 CHGA 1113 14 92468822 NM_001275 NP_001266 C/T P388L plus 13453087 1070 BAH HISP Hispanic 56 1 119 by freq 14q32 chromogranin A (parathyroid secretory protein 1) 32700 rs9664945 AMACO 340706 10 115998487 NM_198496 NP_940898 A/G A9T plus 23613419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 10q26.11 A-domain containing protein similar to matrilin and collagen 32701 rs9664945 AMACO 340706 10 115998487 NM_198496 NP_940898 A/G A9T plus 23613419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 10q26.11 A-domain containing protein similar to matrilin and collagen 32702 rs9664945 AMACO 340706 10 115998487 NM_198496 NP_940898 A/G A9T plus 23613419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 10q26.11 A-domain containing protein similar to matrilin and collagen 32703 rs9666086 OR5I1 10798 11 55460226 NM_006637 NP_006628 A/G F76S plus 24565355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq" 11q11 "olfactory receptor, family 5, subfamily I, member 1" 32704 rs9666086 OR5I1 10798 11 55460226 NM_006637 NP_006628 A/G F76S plus 24565355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq" 11q11 "olfactory receptor, family 5, subfamily I, member 1" 32705 rs9666086 OR5I1 10798 11 55460226 NM_006637 NP_006628 A/G F76S plus 24565355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 11q11 "olfactory receptor, family 5, subfamily I, member 1" 32706 rs9666607 CD44 960 11 35182731 NM_000610 NP_000601 A/G K417R plus 24544229 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 11p13 CD44 antigen (homing function and Indian blood group system) 32707 rs9666607 CD44 960 11 35182731 NM_000610 NP_000601 A/G K417R plus 24544229 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11p13 CD44 antigen (homing function and Indian blood group system) 32708 rs9666607 CD44 960 11 35182731 NM_000610 NP_000601 A/G K417R plus 24544229 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 11p13 CD44 antigen (homing function and Indian blood group system) 32709 rs9667990 IFITM1 8519 11 304207 NM_003641 NP_003632 C/G P13A plus 13464200 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,cluster" 11p15.5 interferon induced transmembrane protein 1 (9-27) 32710 rs9675365 ANKRD30B 374860 18 14769969 XM_371111 XP_371111 C/G F477L plus 13473099 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.49 121 "HapMap,doubleHit,freq,cluster" 18p11.21 ankyrin repeat domain 30B 32711 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 13477310 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32712 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 24292954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32713 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 24292954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32714 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 24292954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32715 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 28459346 549 KYUGEN CP CEPH (78) 156 0.49 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32716 rs9678851 SLC4A1AP 22950 2 27798685 NM_018158 NP_060628 A/C P139T plus 28459346 1335 KYUGEN JPK2 Japanese (100) 200 0.09 123 "HapMap,doubleHit,freq,cluster" 2p23.3 "solute carrier family 4 (anion exchanger), member 1, adaptor protein" 32717 rs9685645 SPOCK3 50859 4 168296255 NM_016950 NP_058646 C/T I112V plus 23739384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q32.3 "sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3" 32718 rs9685645 SPOCK3 50859 4 168296255 NM_016950 NP_058646 C/T I112V plus 23739384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 4q32.3 "sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3" 32719 rs9685645 SPOCK3 50859 4 168296255 NM_016950 NP_058646 C/T I112V plus 23739384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q32.3 "sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3" 32720 rs9715897 VG5Q 55109 5 76368158 NM_018046 NP_060516 A/G T180A plus 13523656 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 5q14.1 angiogenic factor VG5Q 32721 rs9725423 SHARP 23013 1 16010520 NM_015001 NP_055816 G/T V3569G plus 13535775 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 1p36.33-p36.11 SMART/HDAC1 associated repressor protein 32722 rs9748611 ANKRD30B 374860 18 14753987 XM_371111 XP_371111 A/G V375M plus 13562870 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 18p11.21 ankyrin repeat domain 30B 32723 rs9803965 ZFYVE9 9372 1 52415970 NM_004799 NP_004790 A/G Y287C plus 13633666 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 1p32.3 "zinc finger, FYVE domain containing 9" 32724 rs9803965 ZFYVE9 9372 1 52415970 NM_007323 NP_015562 A/G Y287C plus 13633666 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 1p32.3 "zinc finger, FYVE domain containing 9" 32725 rs9803965 ZFYVE9 9372 1 52415970 NM_007324 NP_015563 A/G Y287C plus 13633666 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 1p32.3 "zinc finger, FYVE domain containing 9" 32726 rs9808232 ROCK2 9475 2 11309718 NM_004850 NP_004841 G/T T431N plus 13639652 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 123 "HapMap,doubleHit,freq" 2p24 "Rho-associated, coiled-coil containing protein kinase 2" 32727 rs9808232 ROCK2 9475 2 11309718 NM_004850 NP_004841 G/T T431N plus 24645383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 "HapMap,doubleHit,freq" 2p24 "Rho-associated, coiled-coil containing protein kinase 2" 32728 rs9808232 ROCK2 9475 2 11309718 NM_004850 NP_004841 G/T T431N plus 24645383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "HapMap,doubleHit,freq" 2p24 "Rho-associated, coiled-coil containing protein kinase 2" 32729 rs9808232 ROCK2 9475 2 11309718 NM_004850 NP_004841 G/T T431N plus 24645383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "HapMap,doubleHit,freq" 2p24 "Rho-associated, coiled-coil containing protein kinase 2" 32730 rs9808753 IFNGR2 3460 21 33709182 NM_005534 NP_005525 A/G Q64R plus 24116479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 32731 rs9808753 IFNGR2 3460 21 33709182 NM_005534 NP_005525 A/G Q64R plus 24116479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 32732 rs9808753 IFNGR2 3460 21 33709182 NM_005534 NP_005525 A/G Q64R plus 24116479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 21q22.11 interferon gamma receptor 2 (interferon gamma transducer 1) 32733 rs9826308 MOX2R 131450 3 114130522 NM_138806 NP_620161 A/C H200Q plus 13659032 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 121 "HapMap,doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32734 rs9826308 MOX2R 131450 3 114130522 NM_170780 NP_740750 A/C H177Q plus 13659032 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.44 121 "HapMap,doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32735 rs9827576 CMYA1 165904 3 39200771 NM_194293 NP_919269 C/T I1724V plus 13660377 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 3p21.33 cardiomyopathy associated 1 32736 rs9840993 MYLK 4638 3 124940583 NM_053025 NP_444253 A/G P147S plus 13674544 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32737 rs9840993 MYLK 4638 3 124940583 NM_053025 NP_444253 A/G P147S plus 23288677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32738 rs9840993 MYLK 4638 3 124940583 NM_053025 NP_444253 A/G P147S plus 23288677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32739 rs9840993 MYLK 4638 3 124940583 NM_053025 NP_444253 A/G P147S plus 23288677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32740 rs9840993 MYLK 4638 3 124940583 NM_053026 NP_444254 A/G P147S plus 13674544 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32741 rs9840993 MYLK 4638 3 124940583 NM_053026 NP_444254 A/G P147S plus 23288677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32742 rs9840993 MYLK 4638 3 124940583 NM_053026 NP_444254 A/G P147S plus 23288677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32743 rs9840993 MYLK 4638 3 124940583 NM_053026 NP_444254 A/G P147S plus 23288677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32744 rs9840993 MYLK 4638 3 124940583 NM_053027 NP_444255 A/G P147S plus 13674544 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32745 rs9840993 MYLK 4638 3 124940583 NM_053027 NP_444255 A/G P147S plus 23288677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32746 rs9840993 MYLK 4638 3 124940583 NM_053027 NP_444255 A/G P147S plus 23288677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32747 rs9840993 MYLK 4638 3 124940583 NM_053027 NP_444255 A/G P147S plus 23288677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32748 rs9840993 MYLK 4638 3 124940583 NM_053028 NP_444256 A/G P147S plus 13674544 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32749 rs9840993 MYLK 4638 3 124940583 NM_053028 NP_444256 A/G P147S plus 23288677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32750 rs9840993 MYLK 4638 3 124940583 NM_053028 NP_444256 A/G P147S plus 23288677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32751 rs9840993 MYLK 4638 3 124940583 NM_053028 NP_444256 A/G P147S plus 23288677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32752 rs9840993 MYLK 4638 3 124940583 NM_053029 NP_444257 A/G P147S plus 13674544 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32753 rs9840993 MYLK 4638 3 124940583 NM_053029 NP_444257 A/G P147S plus 23288677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32754 rs9840993 MYLK 4638 3 124940583 NM_053029 NP_444257 A/G P147S plus 23288677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32755 rs9840993 MYLK 4638 3 124940583 NM_053029 NP_444257 A/G P147S plus 23288677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q21 "myosin, light polypeptide kinase" 32756 rs9841174 SERPINI2 5276 3 168667580 NM_006217 NP_006208 C/T E148G plus 13674733 885 TSC-CSHL HapMap-CEPH-30-trios 112 0.3 123 "HapMap,doubleHit,freq,cluster" 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 32757 rs9841174 SERPINI2 5276 3 168667580 NM_006217 NP_006208 C/T E148G plus 23900541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "HapMap,doubleHit,freq,cluster" 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 32758 rs9841174 SERPINI2 5276 3 168667580 NM_006217 NP_006208 C/T E148G plus 23900541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "HapMap,doubleHit,freq,cluster" 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 32759 rs9841174 SERPINI2 5276 3 168667580 NM_006217 NP_006208 C/T E148G plus 23900541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "HapMap,doubleHit,freq,cluster" 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 32760 rs9862221 CIDE-3 63924 3 9883881 NM_022094 NP_071377 G/T E218D plus 23246730 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 3p25.3 cell death activator CIDE-3 32761 rs9862221 CIDE-3 63924 3 9883881 NM_022094 NP_071377 G/T E218D plus 23246730 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 by freq 3p25.3 cell death activator CIDE-3 32762 rs9862221 CIDE-3 63924 3 9883881 NM_022094 NP_071377 G/T E218D plus 23246730 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 3p25.3 cell death activator CIDE-3 32763 rs9865242 MOX2R 131450 3 114125258 NM_138806 NP_620161 C/G E335Q plus 23932135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32764 rs9865242 MOX2R 131450 3 114125258 NM_138806 NP_620161 C/G E335Q plus 23932135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32765 rs9865242 MOX2R 131450 3 114125258 NM_138806 NP_620161 C/G E335Q plus 23932135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32766 rs9865242 MOX2R 131450 3 114125258 NM_170780 NP_740750 C/G E312Q plus 23932135 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32767 rs9865242 MOX2R 131450 3 114125258 NM_170780 NP_740750 C/G E312Q plus 23932135 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32768 rs9865242 MOX2R 131450 3 114125258 NM_170780 NP_740750 C/G E312Q plus 23932135 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.43 123 "by doubleHit,freq,cluster" 3q13.2 cell surface glycoprotein receptor CD200 32769 rs9865715 CYP8B1 1582 3 42892051 NM_004391 NP_004382 A/G S88P plus 23276376 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p22-p21.3 "cytochrome P450, family 8, subfamily B, polypeptide 1" 32770 rs9865715 CYP8B1 1582 3 42892051 NM_004391 NP_004382 A/G S88P plus 23276376 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 3p22-p21.3 "cytochrome P450, family 8, subfamily B, polypeptide 1" 32771 rs9865715 CYP8B1 1582 3 42892051 NM_004391 NP_004382 A/G S88P plus 23276376 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p22-p21.3 "cytochrome P450, family 8, subfamily B, polypeptide 1" 32772 rs9868848 ZFYVE20 64145 3 15090876 NM_022340 NP_071735 A/G L591P plus 13703998 885 TSC-CSHL HapMap-CEPH-30-trios 114 0.03 119 "HapMap,doubleHit,freq" 3p25.1 "zinc finger, FYVE domain containing 20" 32773 rs9874077 CDCP1 64866 3 45102519 NM_022842 NP_073753 C/T D709G plus 23338525 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.32 CUB domain-containing protein 1 32774 rs9874077 CDCP1 64866 3 45102519 NM_022842 NP_073753 C/T D709G plus 23338525 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 3p21.32 CUB domain-containing protein 1 32775 rs9874077 CDCP1 64866 3 45102519 NM_022842 NP_073753 C/T D709G plus 23338525 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.32 CUB domain-containing protein 1 32776 rs9876921 TGM4 7047 3 44923594 NM_003241 NP_003232 A/G V409I plus 24370808 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 32777 rs9876921 TGM4 7047 3 44923594 NM_003241 NP_003232 A/G V409I plus 24370808 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 32778 rs9876921 TGM4 7047 3 44923594 NM_003241 NP_003232 A/G V409I plus 24370808 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 32779 rs9890721 MYCBPAP 84073 17 45958502 NM_032133 NP_115509 C/T R688W plus 24572197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 17q21.33 MYCBP associated protein 32780 rs9890721 MYCBPAP 84073 17 45958502 NM_032133 NP_115509 C/T R688W plus 24572197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by doubleHit,freq,cluster" 17q21.33 MYCBP associated protein 32781 rs9890721 MYCBPAP 84073 17 45958502 NM_032133 NP_115509 C/T R688W plus 24572197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 17q21.33 MYCBP associated protein 32782 rs9892491 OR1G1 8390 17 2977332 NM_003555 NP_003546 C/G Q88H plus 23791710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 1, subfamily G, member 1" 32783 rs9892491 OR1G1 8390 17 2977332 NM_003555 NP_003546 C/G Q88H plus 23791710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 1, subfamily G, member 1" 32784 rs9892491 OR1G1 8390 17 2977332 NM_003555 NP_003546 C/G Q88H plus 23791710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 1, subfamily G, member 1" 32785 rs9893211 GRAP 10750 17 18868271 NM_006613 NP_006604 G/T D150E plus 13730681 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 119 HapMap 17p11.2 GRB2-related adaptor protein 32786 rs9896405 EME1 146956 17 45807713 NM_152463 NP_689676 A/G I49V plus 23639680 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 32787 rs9896405 EME1 146956 17 45807713 NM_152463 NP_689676 A/G I49V plus 23639680 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 32788 rs9896405 EME1 146956 17 45807713 NM_152463 NP_689676 A/G I49V plus 23639680 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 32789 rs9896487 CRK7 51755 17 34872333 NM_016507 NP_057591 G/T Y161X plus 13734042 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 17q21.2 CDC2-related protein kinase 7 32790 rs9896991 PRKWNK4 65266 17 38193940 NM_032387 NP_115763 C/T R677W plus 13734558 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 17q21-q22 "protein kinase, lysine deficient 4" 32791 rs9901675 CD68 968 17 7425536 NM_001251 NP_001242 A/G A350T plus 24584026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 17p13 CD68 antigen 32792 rs9901675 CD68 968 17 7425536 NM_001251 NP_001242 A/G A350T plus 24584026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 17p13 CD68 antigen 32793 rs9901675 CD68 968 17 7425536 NM_001251 NP_001242 A/G A350T plus 24584026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 17p13 CD68 antigen 32794 rs9907627 NF1 4763 17 26583284 NM_000267 NP_000258 A/G E1089K plus 13745562 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 17q11.2 "neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease)" 32795 rs9907701 SMYD4 114826 17 1654738 NM_052928 NP_443160 C/T N101D plus 23790999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p13.3 SET and MYND domain containing 4 32796 rs9907701 SMYD4 114826 17 1654738 NM_052928 NP_443160 C/T N101D plus 23790999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 17p13.3 SET and MYND domain containing 4 32797 rs9907701 SMYD4 114826 17 1654738 NM_052928 NP_443160 C/T N101D plus 23790999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p13.3 SET and MYND domain containing 4 32798 rs9908414 ZNF594 84622 17 5027764 XM_290737 XP_290737 A/G I103T plus 24705184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 17p13 zinc finger protein 594 32799 rs9908414 ZNF594 84622 17 5027764 XM_290737 XP_290737 A/G I103T plus 24705184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by doubleHit,freq,cluster" 17p13 zinc finger protein 594 32800 rs9908414 ZNF594 84622 17 5027764 XM_290737 XP_290737 A/G I103T plus 24705184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 17p13 zinc finger protein 594 32801 rs9909216 ABCA10 10349 17 64724018 NM_080282 NP_525021 A/G P203S plus 24124412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 32802 rs9909216 ABCA10 10349 17 64724018 NM_080282 NP_525021 A/G P203S plus 24124412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 32803 rs9909216 ABCA10 10349 17 64724018 NM_080282 NP_525021 A/G P203S plus 24124412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 32804 rs9909732 TOP3A 7156 17 18122317 NM_004618 NP_004609 C/T D742N plus 23644542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17p12-17p11.2 topoisomerase (DNA) III alpha 32805 rs9909732 TOP3A 7156 17 18122317 NM_004618 NP_004609 C/T D742N plus 23644542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 17p12-17p11.2 topoisomerase (DNA) III alpha 32806 rs9909732 TOP3A 7156 17 18122317 NM_004618 NP_004609 C/T D742N plus 23644542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p12-17p11.2 topoisomerase (DNA) III alpha 32807 rs9913145 BZRAP1 9256 17 53744731 NM_004758 NP_004749 C/T Q817R plus 23791881 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 32808 rs9913145 BZRAP1 9256 17 53744731 NM_004758 NP_004749 C/T Q817R plus 23791881 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 32809 rs9913145 BZRAP1 9256 17 53744731 NM_004758 NP_004749 C/T Q817R plus 23791881 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 17q22-q23 benzodiazapine receptor (peripheral) associated protein 1 32810 rs9916254 ABCA9 10350 17 64494042 NM_080283 NP_525022 C/T G1356S plus 13754463 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 32811 rs9916254 ABCA9 10350 17 64494042 NM_172386 NP_759018 C/T G1356S plus 13754463 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 32812 rs9917722 SI 6476 3 166182743 NM_001041 NP_001032 C/G T1802S plus 13756049 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 3q25.2-q26.2 sucrase-isomaltase (alpha-glucosidase) 32813 rs9931441 ATF7IP2 80063 16 10482314 NM_024997 NP_079273 A/G A543T plus 23754813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32814 rs9931441 ATF7IP2 80063 16 10482314 NM_024997 NP_079273 A/G A543T plus 23754813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32815 rs9931441 ATF7IP2 80063 16 10482314 NM_024997 NP_079273 A/G A543T plus 23754813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32816 rs9932051 ATF7IP2 80063 16 10482297 NM_024997 NP_079273 C/T T537I plus 23754810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32817 rs9932051 ATF7IP2 80063 16 10482297 NM_024997 NP_079273 C/T T537I plus 23754810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32818 rs9932051 ATF7IP2 80063 16 10482297 NM_024997 NP_079273 C/T T537I plus 23754810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16p13.2 activating transcription factor 7 interacting protein 2 32819 rs9934849 PHKB 5257 16 46260658 NM_000293 NP_000284 A/T E820V plus 13773940 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 16q12-q13 "phosphorylase kinase, beta" 32820 rs9935113 PKD1L2 114780 16 79768997 NM_182740 NP_877417 A/C G785C plus 23518308 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 32821 rs9935113 PKD1L2 114780 16 79768997 NM_182740 NP_877417 A/C G785C plus 23518308 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 32822 rs9935113 PKD1L2 114780 16 79768997 NM_182740 NP_877417 A/C G785C plus 23518308 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 16q23.2 polycystic kidney disease 1-like 2 32823 rs9942517 BCLAF1 9774 6 136641515 NM_014739 NP_055554 C/G G66A plus 13782002 885 TSC-CSHL HapMap-CEPH-30-trios 100 1 121 "HapMap,doubleHit,cluster" 6q22-q23 BCL2-associated transcription factor 1 32824 rs9950267 LAMA1 284217 18 7033335 NM_005559 NP_005550 A/G L349S plus 23587081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 18p11.23 "laminin, alpha 1" 32825 rs9950267 LAMA1 284217 18 7033335 NM_005559 NP_005550 A/G L349S plus 23587081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 18p11.23 "laminin, alpha 1" 32826 rs9950267 LAMA1 284217 18 7033335 NM_005559 NP_005550 A/G L349S plus 23587081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 18p11.23 "laminin, alpha 1" 32827 rs9960464 SLC14A2 8170 18 41500154 NM_007163 NP_009094 A/G R510Q plus 24036287 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 "by cluster,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 32828 rs9960464 SLC14A2 8170 18 41500154 NM_007163 NP_009094 A/G R510Q plus 24036287 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by cluster,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 32829 rs9960464 SLC14A2 8170 18 41500154 NM_007163 NP_009094 A/G R510Q plus 24036287 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 18q12.1-q21.1 "solute carrier family 14 (urea transporter), member 2" 32830 rs9967382 SERPINB10 5273 18 59738047 NM_005024 NP_005015 C/T P140S plus 24058697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 32831 rs9967382 SERPINB10 5273 18 59738047 NM_005024 NP_005015 C/T P140S plus 24058697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 32832 rs9967382 SERPINB10 5273 18 59738047 NM_005024 NP_005015 C/T P140S plus 24058697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 32833 rs9973235 M6PRBP1 10226 19 4798713 NM_005817 NP_005808 A/G V275A plus 13815244 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.11 123 "HapMap,doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 32834 rs9973235 M6PRBP1 10226 19 4798713 NM_005817 NP_005808 A/G V275A plus 24542743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 32835 rs9973235 M6PRBP1 10226 19 4798713 NM_005817 NP_005808 A/G V275A plus 24542743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 32836 rs9973235 M6PRBP1 10226 19 4798713 NM_005817 NP_005808 A/G V275A plus 24542743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "HapMap,doubleHit,freq,cluster" 19p13.3 mannose-6-phosphate receptor binding protein 1 32837 rs9975588 MCM3AP 8888 21 46529324 NM_003906 NP_003897 A/G S102L plus 13817821 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.41 120 "HapMap,doubleHit,freq,cluster" 21q22.3 MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein 32838 rs9980589 SYNJ1 8867 21 32925801 NM_003895 NP_003886 A/G V1366A plus 13823277 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 119 HapMap 21q22.2 synaptojanin 1 32839 rs9984077 GART 2618 21 33818983 NM_000819 NP_000810 C/T V421I plus 13827082 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32840 rs9984077 GART 2618 21 33818983 NM_000819 NP_000810 C/T V421I plus 24790204 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32841 rs9984077 GART 2618 21 33818983 NM_000819 NP_000810 C/T V421I plus 24796625 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32842 rs9984077 GART 2618 21 33818983 NM_175085 NP_780294 C/T V421I plus 13827082 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.22 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32843 rs9984077 GART 2618 21 33818983 NM_175085 NP_780294 C/T V421I plus 24790204 1303 SEQUENOM CEPH CEPH (92) 184 0.23 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32844 rs9984077 GART 2618 21 33818983 NM_175085 NP_780294 C/T V421I plus 24796625 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "HapMap,freq,cluster" 21q22.11 "phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase" 32845 rs10000692 TNIP3 79931 4 122435922 NM_024873 NP_079149 C/T K99E plus 13846363 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 4q27 TNFAIP3 interacting protein 3 32846 rs10017772 CDHJ 54798 4 155645140 NM_017639 NP_060109 C/T H174R plus 24153312 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 32847 rs10017772 CDHJ 54798 4 155645140 NM_017639 NP_060109 C/T H174R plus 24153312 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 32848 rs10017772 CDHJ 54798 4 155645140 NM_017639 NP_060109 C/T H174R plus 24153312 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 32849 rs10034345 GRID2 2895 4 94701220 NM_001510 NP_001501 A/G V490I plus 23282315 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 4q22 "glutamate receptor, ionotropic, delta 2" 32850 rs10034345 GRID2 2895 4 94701220 NM_001510 NP_001501 A/G V490I plus 23282315 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 4q22 "glutamate receptor, ionotropic, delta 2" 32851 rs10034345 GRID2 2895 4 94701220 NM_001510 NP_001501 A/G V490I plus 23282315 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 4q22 "glutamate receptor, ionotropic, delta 2" 32852 rs10036727 SLIT3 6586 5 168112659 NM_003062 NP_003053 C/T G618S plus 24671734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by cluster,freq" 5q35 slit homolog 3 (Drosophila) 32853 rs10036727 SLIT3 6586 5 168112659 NM_003062 NP_003053 C/T G618S plus 24671734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 5q35 slit homolog 3 (Drosophila) 32854 rs10036727 SLIT3 6586 5 168112659 NM_003062 NP_003053 C/T G618S plus 24671734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 5q35 slit homolog 3 (Drosophila) 32855 rs10040427 SLC22A5 6584 5 131742005 NM_003060 NP_003051 C/T L144F plus 16339658 1142 PHARMGKB_PMT PA129604802 552 0.02 120 "by cluster,freq" 5q31 "solute carrier family 22 (organic cation transporter), member 5" 32856 rs10047195 MACF1 23499 1 39468780 NM_033044 NP_149033 C/G A916G plus 13896243 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 119 HapMap 1p32-p31 microtubule-actin crosslinking factor 1 32857 rs10048853 SULF2 55959 20 45726317 NM_018837 NP_061325 C/T R674H plus 23783541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32858 rs10048853 SULF2 55959 20 45726317 NM_018837 NP_061325 C/T R674H plus 23783541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32859 rs10048853 SULF2 55959 20 45726317 NM_018837 NP_061325 C/T R674H plus 23783541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32860 rs10048853 SULF2 55959 20 45726317 NM_198596 NP_940998 C/T R674H plus 23783541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32861 rs10048853 SULF2 55959 20 45726317 NM_198596 NP_940998 C/T R674H plus 23783541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32862 rs10048853 SULF2 55959 20 45726317 NM_198596 NP_940998 C/T R674H plus 23783541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q12-q13.2 sulfatase 2 32863 rs10050860 ARTS-1 51752 5 96147966 NM_016442 NP_057526 C/T D575N plus 24449032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 32864 rs10050860 ARTS-1 51752 5 96147966 NM_016442 NP_057526 C/T D575N plus 24449032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 32865 rs10050860 ARTS-1 51752 5 96147966 NM_016442 NP_057526 C/T D575N plus 24449032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 32866 rs10055840 SLCO6A1 133482 5 101752347 NM_173488 NP_775759 C/G T654R plus 24329719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 32867 rs10055840 SLCO6A1 133482 5 101752347 NM_173488 NP_775759 C/G T654R plus 24329719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 32868 rs10055840 SLCO6A1 133482 5 101752347 NM_173488 NP_775759 C/G T654R plus 24329719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 32869 rs10064631 MTRR 4552 5 7938907 NM_002454 NP_002445 C/G L333V plus 23260939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32870 rs10064631 MTRR 4552 5 7938907 NM_002454 NP_002445 C/G L333V plus 23260939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32871 rs10064631 MTRR 4552 5 7938907 NM_002454 NP_002445 C/G L333V plus 23260939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32872 rs10064631 MTRR 4552 5 7938907 NM_024010 NP_076915 C/G L360V plus 23260939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32873 rs10064631 MTRR 4552 5 7938907 NM_024010 NP_076915 C/G L360V plus 23260939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32874 rs10064631 MTRR 4552 5 7938907 NM_024010 NP_076915 C/G L360V plus 23260939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 32875 rs10066063 PDZK3 23037 5 32126051 NM_178140 NP_835260 A/G R2247Q plus 24009451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 5p13.3 PDZ domain containing 3 32876 rs10066063 PDZK3 23037 5 32126051 NM_178140 NP_835260 A/G R2247Q plus 24009451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 5p13.3 PDZ domain containing 3 32877 rs10066063 PDZK3 23037 5 32126051 NM_178140 NP_835260 A/G R2247Q plus 24009451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 5p13.3 PDZ domain containing 3 32878 rs10067096 ADAM19 8728 5 156849918 NM_033274 NP_150377 A/C S740A plus 15357338 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.19 120 "by doubleHit,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 32879 rs10067096 ADAM19 8728 5 156849918 NM_033274 NP_150377 A/C S740A plus 15357338 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.23 120 "by doubleHit,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 32880 rs10067096 ADAM19 8728 5 156849918 NM_033274 NP_150377 A/C S740A plus 15357338 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by doubleHit,freq,cluster" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 32881 rs10067182 PCDHA7 56141 5 140194565 NM_018910 NP_061733 A/G R138K plus 24796230 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 7 32882 rs10067182 PCDHA7 56141 5 140194565 NM_031852 NP_114040 A/G R138K plus 24796230 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 "by doubleHit,freq,cluster" 5q31 protocadherin alpha 7 32883 rs10068403 CSS3 337876 5 129548578 XM_373440 XP_373440 A/G G615E plus 24192871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q31.1 chondroitin sulfate synthase 3 32884 rs10068403 CSS3 337876 5 129548578 XM_373440 XP_373440 A/G G615E plus 24192871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 5q31.1 chondroitin sulfate synthase 3 32885 rs10068403 CSS3 337876 5 129548578 XM_373440 XP_373440 A/G G615E plus 24192871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 by freq 5q31.1 chondroitin sulfate synthase 3 32886 rs10081139 NT5E 4907 6 86255962 NM_002526 NP_002517 C/T M379T plus 23447732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 32887 rs10081139 NT5E 4907 6 86255962 NM_002526 NP_002517 C/T M379T plus 23447732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 32888 rs10081139 NT5E 4907 6 86255962 NM_002526 NP_002517 C/T M379T plus 23447732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 "by doubleHit,freq,cluster" 6q14-q21 "5'-nucleotidase, ecto (CD73)" 32889 rs10083789 USP31 57478 16 22988135 NM_020718 NP_065769 A/C R931L plus 24398343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 16p12.3 ubiquitin specific protease 31 32890 rs10083789 USP31 57478 16 22988135 NM_020718 NP_065769 A/C R931L plus 24398343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 16p12.3 ubiquitin specific protease 31 32891 rs10083789 USP31 57478 16 22988135 NM_020718 NP_065769 A/C R931L plus 24398343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16p12.3 ubiquitin specific protease 31 32892 rs10093885 PKHD1L1 93035 8 110517811 NM_177531 NP_803875 A/G T1192A plus 23573502 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 32893 rs10093885 PKHD1L1 93035 8 110517811 NM_177531 NP_803875 A/G T1192A plus 23573502 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by cluster,freq" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 32894 rs10093885 PKHD1L1 93035 8 110517811 NM_177531 NP_803875 A/G T1192A plus 23573502 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 32895 rs10100659 NCOA6IP 96764 8 56871255 NM_024831 NP_079107 C/T I511T plus 23573292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 32896 rs10100659 NCOA6IP 96764 8 56871255 NM_024831 NP_079107 C/T I511T plus 23573292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 32897 rs10100659 NCOA6IP 96764 8 56871255 NM_024831 NP_079107 C/T I511T plus 23573292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 8q11 nuclear receptor coactivator 6 interacting protein 32898 rs10115703 CER1 9350 9 14712616 NM_005454 NP_005445 A/G R19W plus 23542825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 32899 rs10115703 CER1 9350 9 14712616 NM_005454 NP_005445 A/G R19W plus 23542825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 32900 rs10115703 CER1 9350 9 14712616 NM_005454 NP_005445 A/G R19W plus 23542825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9p23-p22 "cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis)" 32901 rs10120210 ECM2 1842 9 92364537 NM_001393 NP_001384 G/T Q56P plus 24443164 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 9q22.3 "extracellular matrix protein 2, female organ and adipocyte specific" 32902 rs10120210 ECM2 1842 9 92364537 NM_001393 NP_001384 G/T Q56P plus 24443164 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 9q22.3 "extracellular matrix protein 2, female organ and adipocyte specific" 32903 rs10120210 ECM2 1842 9 92364537 NM_001393 NP_001384 G/T Q56P plus 24443164 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 9q22.3 "extracellular matrix protein 2, female organ and adipocyte specific" 32904 rs10131326 OR4N5 390437 14 19682305 XM_372505 XP_372505 A/G N191D plus 23814864 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily N, member 5" 32905 rs10131326 OR4N5 390437 14 19682305 XM_372505 XP_372505 A/G N191D plus 23814864 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily N, member 5" 32906 rs10131326 OR4N5 390437 14 19682305 XM_372505 XP_372505 A/G N191D plus 23814864 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 14q11.2 "olfactory receptor, family 4, subfamily N, member 5" 32907 rs10134365 MIA2 117153 14 38791774 NM_054024 NP_473365 C/G D547H plus 24112861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 14q13.2 melanoma inhibitory activity 2 32908 rs10134365 MIA2 117153 14 38791774 NM_054024 NP_473365 C/G D547H plus 24112861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by cluster,freq" 14q13.2 melanoma inhibitory activity 2 32909 rs10134365 MIA2 117153 14 38791774 NM_054024 NP_473365 C/G D547H plus 24112861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 22 0.5 123 "by cluster,freq" 14q13.2 melanoma inhibitory activity 2 32910 rs10134472 OR4N5 390437 14 19682512 XM_372505 XP_372505 C/T C260R plus 13993344 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 14q11.2 "olfactory receptor, family 4, subfamily N, member 5" 32911 rs10138395 FBXO34 55030 14 54888972 NM_017943 NP_060413 G/T G704V plus 24119518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 14q22.2 F-box protein 34 32912 rs10138395 FBXO34 55030 14 54888972 NM_017943 NP_060413 G/T G704V plus 24119518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 14q22.2 F-box protein 34 32913 rs10138395 FBXO34 55030 14 54888972 NM_017943 NP_060413 G/T G704V plus 24119518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 14q22.2 F-box protein 34 32914 rs10139784 SPATA7 55812 14 87974320 NM_018418 NP_060888 A/G R534Q plus 13998928 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 32915 rs10139784 SPATA7 55812 14 87974320 NM_018418 NP_060888 A/G R534Q plus 23637565 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 32916 rs10139784 SPATA7 55812 14 87974320 NM_018418 NP_060888 A/G R534Q plus 23637565 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 32917 rs10139784 SPATA7 55812 14 87974320 NM_018418 NP_060888 A/G R534Q plus 23637565 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 14q31.3 spermatogenesis associated 7 32918 rs10146482 NEK9 91754 14 74643840 NM_033116 NP_149107 C/T R429H plus 24606789 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 14q24.2 NIMA (never in mitosis gene a)- related kinase 9 32919 rs10146482 NEK9 91754 14 74643840 NM_033116 NP_149107 C/T R429H plus 24606789 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 14q24.2 NIMA (never in mitosis gene a)- related kinase 9 32920 rs10146482 NEK9 91754 14 74643840 NM_033116 NP_149107 C/T R429H plus 24606789 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 14q24.2 NIMA (never in mitosis gene a)- related kinase 9 32921 rs10146482 NEK9 91754 14 74643840 NM_033116 NP_149107 C/T R429H plus 24791796 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 "by doubleHit,freq,cluster" 14q24.2 NIMA (never in mitosis gene a)- related kinase 9 32922 rs10148371 LGALS3 3958 14 54679171 NM_002306 NP_002297 A/G R183K plus 23666434 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 32923 rs10148371 LGALS3 3958 14 54679171 NM_002306 NP_002297 A/G R183K plus 23666434 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 32924 rs10148371 LGALS3 3958 14 54679171 NM_002306 NP_002297 A/G R183K plus 23666434 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 14q21-q22 "lectin, galactoside-binding, soluble, 3 (galectin 3)" 32925 rs10149705 CLMN 79789 14 94727775 NM_024734 NP_079010 A/G P963L plus 14009358 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 14q32.2 "calmin (calponin-like, transmembrane)" 32926 rs10151259 RPGRIP1 57096 14 20859880 NM_020366 NP_065099 G/T A547S plus 23798169 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 32927 rs10151259 RPGRIP1 57096 14 20859880 NM_020366 NP_065099 G/T A547S plus 23798169 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 32928 rs10151259 RPGRIP1 57096 14 20859880 NM_020366 NP_065099 G/T A547S plus 23798169 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 32929 rs10151658 SYNE2 23224 14 63682611 NM_015180 NP_055995 A/C L5185M plus 24705471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32930 rs10151658 SYNE2 23224 14 63682611 NM_015180 NP_055995 A/C L5185M plus 24705471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32931 rs10151658 SYNE2 23224 14 63682611 NM_015180 NP_055995 A/C L5185M plus 24705471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32932 rs10151658 SYNE2 23224 14 63682611 NM_182914 NP_878918 A/C L1571M plus 24705471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32933 rs10151658 SYNE2 23224 14 63682611 NM_182914 NP_878918 A/C L1571M plus 24705471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32934 rs10151658 SYNE2 23224 14 63682611 NM_182914 NP_878918 A/C L1571M plus 24705471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 32935 rs10157992 NFASC 23114 1 201647596 XM_046808 XP_046808 C/T F150S plus 24640392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q32.1 neurofascin 32936 rs10157992 NFASC 23114 1 201647596 XM_046808 XP_046808 C/T F150S plus 24640392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 1q32.1 neurofascin 32937 rs10157992 NFASC 23114 1 201647596 XM_046808 XP_046808 C/T F150S plus 24640392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1q32.1 neurofascin 32938 rs10160013 SVIL 6840 10 29879793 NM_003174 NP_003165 A/G V189A plus 23776501 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32939 rs10160013 SVIL 6840 10 29879793 NM_003174 NP_003165 A/G V189A plus 23776501 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32940 rs10160013 SVIL 6840 10 29879793 NM_003174 NP_003165 A/G V189A plus 23776501 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32941 rs10160013 SVIL 6840 10 29879793 NM_021738 NP_068506 A/G V189A plus 23776501 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32942 rs10160013 SVIL 6840 10 29879793 NM_021738 NP_068506 A/G V189A plus 23776501 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32943 rs10160013 SVIL 6840 10 29879793 NM_021738 NP_068506 A/G V189A plus 23776501 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 10p11.2 supervillin 32944 rs10162564 MGEA6 4253 14 38838894 NM_005930 NP_005921 A/G K250E plus 14024945 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 32945 rs10162564 MGEA6 4253 14 38838894 NM_203354 NP_976229 A/G K238E plus 14024945 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 32946 rs10162564 MGEA6 4253 14 38838894 NM_203355 NP_976230 A/G K250E plus 14024945 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 32947 rs10162564 MGEA6 4253 14 38838894 NM_203356 NP_976231 A/G K221E plus 14024945 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 32948 rs10162564 MGEA6 4253 14 38838894 NM_203357 NP_976232 A/G K175E plus 14024945 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit,cluster" 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 32949 rs10163657 LOXHD1 125336 18 42435225 NM_144612 NP_653213 C/T V85I plus 23499428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 18q21.1 lipoxygenase homology domains 1 32950 rs10163657 LOXHD1 125336 18 42435225 NM_144612 NP_653213 C/T V85I plus 23499428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 18q21.1 lipoxygenase homology domains 1 32951 rs10163657 LOXHD1 125336 18 42435225 NM_144612 NP_653213 C/T V85I plus 23499428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 18q21.1 lipoxygenase homology domains 1 32952 rs10185178 MYO3B 140469 2 171181781 NM_138995 NP_620482 A/G R1082K plus 21730514 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 32953 rs10185178 MYO3B 140469 2 171181781 NM_138995 NP_620482 A/G R1082K plus 23716949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 32954 rs10185178 MYO3B 140469 2 171181781 NM_138995 NP_620482 A/G R1082K plus 23716949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 32955 rs10185178 MYO3B 140469 2 171181781 NM_138995 NP_620482 A/G R1082K plus 23716949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 2q31.1-q31.2 myosin IIIB 32956 rs10193972 ALMS1 7840 2 73629311 NM_015120 NP_055935 A/G N2856S plus 24642288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 32957 rs10193972 ALMS1 7840 2 73629311 NM_015120 NP_055935 A/G N2856S plus 24642288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 32958 rs10193972 ALMS1 7840 2 73629311 NM_015120 NP_055935 A/G N2856S plus 24642288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2p13 Alstrom syndrome 1 32959 rs10201400 ANXA4 307 2 69949390 NM_001153 NP_001144 C/G S137R plus 23698359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2p13 annexin A4 32960 rs10201400 ANXA4 307 2 69949390 NM_001153 NP_001144 C/G S137R plus 23698359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 2p13 annexin A4 32961 rs10201400 ANXA4 307 2 69949390 NM_001153 NP_001144 C/G S137R plus 23698359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 2p13 annexin A4 32962 rs10209072 ITGA6 3655 2 173181465 NM_000210 NP_000201 A/G V930M plus 23222721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q31.1 "integrin, alpha 6" 32963 rs10209072 ITGA6 3655 2 173181465 NM_000210 NP_000201 A/G V930M plus 23222721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 2q31.1 "integrin, alpha 6" 32964 rs10209072 ITGA6 3655 2 173181465 NM_000210 NP_000201 A/G V930M plus 23222721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q31.1 "integrin, alpha 6" 32965 rs10210191 THADA 63892 2 43729728 NM_022065 NP_071348 C/T E63G plus 14075347 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 2p22.1 thyroid adenoma associated 32966 rs10221538 OR1I1 126370 19 15070603 XM_065050 XP_065050 A/G E341K plus 23984403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 32967 rs10221538 OR1I1 126370 19 15070603 XM_065050 XP_065050 A/G E341K plus 23984403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 32968 rs10221538 OR1I1 126370 19 15070603 XM_065050 XP_065050 A/G E341K plus 23984403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 32969 rs10260756 LAMB4 22798 7 107283795 NM_007356 NP_031382 G/T T1350N plus 23420855 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 32970 rs10260756 LAMB4 22798 7 107283795 NM_007356 NP_031382 G/T T1350N plus 23420855 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 32971 rs10260756 LAMB4 22798 7 107283795 NM_007356 NP_031382 G/T T1350N plus 23420855 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q22-q31.2 "laminin, beta 4" 32972 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 14874135 901 AFFY AfAm 12 0.25 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32973 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 14874135 902 AFFY Caucasian 24 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32974 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 14874135 903 AFFY Asian 12 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32975 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 14874135 904 AFFY CEPH 12 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32976 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 14874135 905 AFFY PDpanel 46 0.07 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32977 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 23529140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32978 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 23529140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32979 rs10261848 PCLO 27445 7 82226909 XM_168530 XP_168530 G/T T1487P plus 23529140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 32980 rs10266424 MTERF 7978 7 91147879 NM_006980 NP_008911 C/T A294T plus 24488414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 7q21-q22 "transcription termination factor, mitochondrial" 32981 rs10266424 MTERF 7978 7 91147879 NM_006980 NP_008911 C/T A294T plus 24488414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 7q21-q22 "transcription termination factor, mitochondrial" 32982 rs10266424 MTERF 7978 7 91147879 NM_006980 NP_008911 C/T A294T plus 24488414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 7q21-q22 "transcription termination factor, mitochondrial" 32983 rs10274334 PKD1L1 168507 7 47698571 NM_138295 NP_612152 C/G R1053P plus 14144163 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.4 121 "HapMap,freq,cluster" 7p12.3 polycystic kidney disease 1 like 1 32984 rs10283100 ENPP2 5168 8 120665204 NM_006209 NP_006200 A/G S545P plus 24409953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 32985 rs10283100 ENPP2 5168 8 120665204 NM_006209 NP_006200 A/G S545P plus 24409953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 32986 rs10283100 ENPP2 5168 8 120665204 NM_006209 NP_006200 A/G S545P plus 24409953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 32987 rs10305420 GLP1R 2740 6 39124614 NM_002062 NP_002053 C/T P7L plus 14322991 693 EGP_SNPS PDR90 NIHPDR 170 0.25 119 by freq 6p21 glucagon-like peptide 1 receptor 32988 rs10305492 GLP1R 2740 6 39154772 NM_002062 NP_002053 A/G A316T plus 14323128 693 EGP_SNPS PDR90 NIHPDR 168 0.01 119 by freq 6p21 glucagon-like peptide 1 receptor 32989 rs10305741 ARNT 405 1 147602937 NM_001668 NP_001659 G/T D517E minus 14324604 693 EGP_SNPS PDR90 NIHPDR 152 0.01 119 by freq 1q21 aryl hydrocarbon receptor nuclear translocator 32990 rs10305741 ARNT 405 1 147602937 NM_178427 NP_848514 G/T D502E minus 14324604 693 EGP_SNPS PDR90 NIHPDR 152 0.01 119 by freq 1q21 aryl hydrocarbon receptor nuclear translocator 32991 rs10306140 PTGS1 5742 9 122220701 NM_000962 NP_000953 G/T R149L plus 14327294 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.02 119 by freq 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 32992 rs10306140 PTGS1 5742 9 122220701 NM_000962 NP_000953 G/T R149L plus 14327294 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 119 by freq 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 32993 rs10306140 PTGS1 5742 9 122220701 NM_080591 NP_542158 G/T R149L plus 14327294 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.02 119 by freq 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 32994 rs10306140 PTGS1 5742 9 122220701 NM_080591 NP_542158 G/T R149L plus 14327294 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 42 0.02 119 by freq 9q32-q33.3 prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 32995 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 14660129 1073 ELEVY MQFCEPOP_DS49 French Canadian Caucasians and European Caucasians 36 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 32996 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 14660129 1074 ELEVY AAPOP_DS49 African-American 36 0.03 123 by freq 12q24.31 "scavenger receptor class B, member 1" 32997 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 14660129 1075 ELEVY ASHJSEPBMPOP_DS49 "Middle Easteners and North Africans from Lebanon, Egypt or Algeria, Jewish Ashkenazims and Jewish Sepharadims" 46 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 32998 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 14660129 1076 ELEVY SEPOP_DS49 "South East Asians (Laos, Vietnam) and East Asians (China and Korea)" 18 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 32999 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 14660129 1077 ELEVY NADOJIBSAPOP_DS49 Amerindians from North & South America from Coriell Institute 42 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 33000 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 23482269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 33001 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 23482269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q24.31 "scavenger receptor class B, member 1" 33002 rs10396209 SCARB1 949 12 123824422 NM_005505 NP_005496 A/G V135I minus 23482269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q24.31 "scavenger receptor class B, member 1" 33003 rs10396213 SCARB1 949 12 123821337 NM_005505 NP_005496 A/G S229G minus 14660136 1073 ELEVY MQFCEPOP_DS49 French Canadian Caucasians and European Caucasians 36 1 119 by freq 12q24.31 "scavenger receptor class B, member 1" 33004 rs10396213 SCARB1 949 12 123821337 NM_005505 NP_005496 A/G S229G minus 14660136 1074 ELEVY AAPOP_DS49 African-American 36 1 119 by freq 12q24.31 "scavenger receptor class B, member 1" 33005 rs10396213 SCARB1 949 12 123821337 NM_005505 NP_005496 A/G S229G minus 14660136 1075 ELEVY ASHJSEPBMPOP_DS49 "Middle Easteners and North Africans from Lebanon, Egypt or Algeria, Jewish Ashkenazims and Jewish Sepharadims" 46 1 119 by freq 12q24.31 "scavenger receptor class B, member 1" 33006 rs10396213 SCARB1 949 12 123821337 NM_005505 NP_005496 A/G S229G minus 14660136 1076 ELEVY SEPOP_DS49 "South East Asians (Laos, Vietnam) and East Asians (China and Korea)" 18 0.11 119 by freq 12q24.31 "scavenger receptor class B, member 1" 33007 rs10396213 SCARB1 949 12 123821337 NM_005505 NP_005496 A/G S229G minus 14660136 1077 ELEVY NADOJIBSAPOP_DS49 Amerindians from North & South America from Coriell Institute 42 1 119 by freq 12q24.31 "scavenger receptor class B, member 1" 33008 rs10401716 BCNP1 199786 19 17515420 NM_173544 NP_775815 C/T L543F plus 14691003 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19p13.12 B-cell novel protein 1 33009 rs10401800 DHDH 27294 19 54128794 NM_014475 NP_055290 C/G A2P plus 23812946 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 33010 rs10401800 DHDH 27294 19 54128794 NM_014475 NP_055290 C/G A2P plus 23812946 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 33011 rs10401800 DHDH 27294 19 54128794 NM_014475 NP_055290 C/G A2P plus 23812946 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13.3 dihydrodiol dehydrogenase (dimeric) 33012 rs10407022 AMH 268 19 2200477 NM_000479 NP_000470 G/T S49I plus 14699093 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.19 121 "HapMap,doubleHit,freq,cluster" 19p13.3 anti-Mullerian hormone 33013 rs10407115 PPAP2C 8612 19 233753 NM_003712 NP_003703 A/G A180V plus 23754769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33014 rs10407115 PPAP2C 8612 19 233753 NM_003712 NP_003703 A/G A180V plus 23754769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33015 rs10407115 PPAP2C 8612 19 233753 NM_003712 NP_003703 A/G A180V plus 23754769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33016 rs10407115 PPAP2C 8612 19 233753 NM_177526 NP_803545 A/G A124V plus 23754769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33017 rs10407115 PPAP2C 8612 19 233753 NM_177526 NP_803545 A/G A124V plus 23754769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33018 rs10407115 PPAP2C 8612 19 233753 NM_177526 NP_803545 A/G A124V plus 23754769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33019 rs10407115 PPAP2C 8612 19 233753 NM_177543 NP_808211 A/G A201V plus 23754769 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.36 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33020 rs10407115 PPAP2C 8612 19 233753 NM_177543 NP_808211 A/G A201V plus 23754769 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33021 rs10407115 PPAP2C 8612 19 233753 NM_177543 NP_808211 A/G A201V plus 23754769 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 19p13 phosphatidic acid phosphatase type 2C 33022 rs10407445 ZIM3 114026 19 62341774 NM_052882 NP_443114 C/T R7K plus 24225806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 33023 rs10407445 ZIM3 114026 19 62341774 NM_052882 NP_443114 C/T R7K plus 24225806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 33024 rs10407445 ZIM3 114026 19 62341774 NM_052882 NP_443114 C/T R7K plus 24225806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q13.4 "zinc finger, imprinted 3" 33025 rs10409531 ZFP28 140612 19 61757825 NM_020828 NP_065879 C/T A620V plus 24225772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 28 homolog (mouse) 33026 rs10409531 ZFP28 140612 19 61757825 NM_020828 NP_065879 C/T A620V plus 24225772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 28 homolog (mouse) 33027 rs10409531 ZFP28 140612 19 61757825 NM_020828 NP_065879 C/T A620V plus 24225772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.41 123 "by doubleHit,freq,cluster" 19q13.43 zinc finger protein 28 homolog (mouse) 33028 rs10409962 SIGLEC8 27181 19 56652752 NM_014442 NP_055257 A/G S170P plus 14703561 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.04 119 "HapMap,doubleHit,freq" 19q13.33-q13.41 sialic acid binding Ig-like lectin 8 33029 rs10410075 VRK3 51231 19 55189950 NM_016440 NP_057524 A/G S268L plus 23616611 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 19q13 vaccinia related kinase 3 33030 rs10410075 VRK3 51231 19 55189950 NM_016440 NP_057524 A/G S268L plus 23616611 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 19q13 vaccinia related kinase 3 33031 rs10410075 VRK3 51231 19 55189950 NM_016440 NP_057524 A/G S268L plus 23616611 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 19q13 vaccinia related kinase 3 33032 rs10414535 SFRS14 10147 19 18982056 NM_014884 NP_055699 C/T Q649R plus 14710639 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19p12 "splicing factor, arginine/serine-rich 14" 33033 rs10415207 ZNF442 79973 19 12323071 NM_030824 NP_110451 G/T P110T plus 14711686 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 442 33034 rs10415207 ZNF442 79973 19 12323071 NM_030824 NP_110451 G/T P110T plus 23576779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 442 33035 rs10415207 ZNF442 79973 19 12323071 NM_030824 NP_110451 G/T P110T plus 23576779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 442 33036 rs10415207 ZNF442 79973 19 12323071 NM_030824 NP_110451 G/T P110T plus 23576779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 19p13.2 zinc finger protein 442 33037 rs10415373 VASP 7408 19 50713159 NM_003370 NP_003361 A/G A104T plus 14711947 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19q13.2-q13.3 vasodilator-stimulated phosphoprotein 33038 rs10415562 OR7C1 26664 19 14771573 NM_198944 NP_945182 C/T V126I plus 24422819 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 33039 rs10415562 OR7C1 26664 19 14771573 NM_198944 NP_945182 C/T V126I plus 24422819 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 33040 rs10415562 OR7C1 26664 19 14771573 NM_198944 NP_945182 C/T V126I plus 24422819 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 33041 rs10419604 ZNF228 7771 19 49525308 NM_013380 NP_037512 G/T T281K plus 23765588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.2 zinc finger protein 228 33042 rs10419604 ZNF228 7771 19 49525308 NM_013380 NP_037512 G/T T281K plus 23765588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2 zinc finger protein 228 33043 rs10419604 ZNF228 7771 19 49525308 NM_013380 NP_037512 G/T T281K plus 23765588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.2 zinc finger protein 228 33044 rs10419832 ILT7 23547 19 59541211 NM_012276 NP_036408 C/T I155V plus 23778067 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 33045 rs10419832 ILT7 23547 19 59541211 NM_012276 NP_036408 C/T I155V plus 23778067 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 33046 rs10419832 ILT7 23547 19 59541211 NM_012276 NP_036408 C/T I155V plus 23778067 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 4" 33047 rs10420644 ZNF426 79088 19 9501066 NM_024106 NP_077011 C/T T219A plus 14720124 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19p13.2 zinc finger protein 426 33048 rs10421121 ZNF556 80032 19 2828365 NM_024967 NP_079243 C/T R137C plus 14720864 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.03 119 "HapMap,freq" 19p13.3 zinc finger protein 556 33049 rs10421769 GPATC1 55094 19 38297152 NM_018025 NP_060495 C/T L728S plus 24525144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 19q13.12 G patch domain containing 1 33050 rs10421769 GPATC1 55094 19 38297152 NM_018025 NP_060495 C/T L728S plus 24525144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.12 G patch domain containing 1 33051 rs10421769 GPATC1 55094 19 38297152 NM_018025 NP_060495 C/T L728S plus 24525144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 19q13.12 G patch domain containing 1 33052 rs10422475 ZIM2 23619 19 61978034 NM_015363 NP_056178 C/T R473K plus 14722960 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19q13.4 "zinc finger, imprinted 2" 33053 rs10423171 CEACAM5 1048 19 46916900 NM_004363 NP_004354 A/C R664S plus 14724026 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19q13.1-q13.2 carcinoembryonic antigen-related cell adhesion molecule 5 33054 rs10424687 CAPNS1 826 19 41325675 NM_001749 NP_001740 C/T L120F plus 14726359 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19q13.13 "calpain, small subunit 1" 33055 rs10425108 DHPS 1725 19 12651506 NM_001930 NP_001921 C/G E174D plus 14727023 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 19p13.2-p13.1 deoxyhypusine synthase 33056 rs10425108 DHPS 1725 19 12651506 NM_013406 NP_037538 C/G E174D plus 14727023 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 19p13.2-p13.1 deoxyhypusine synthase 33057 rs10425108 DHPS 1725 19 12651506 NM_013407 NP_037539 C/G E174D plus 14727023 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 "HapMap,doubleHit" 19p13.2-p13.1 deoxyhypusine synthase 33058 rs10425917 MYO9B 4650 19 17147543 NM_004145 NP_004136 A/C L738I plus 14728253 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 19p13.1 myosin IXB 33059 rs10426374 ZNF473 25888 19 55241496 XM_046390 XP_046390 G/T S662A plus 23767757 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.33 zinc finger protein 473 33060 rs10426374 ZNF473 25888 19 55241496 XM_046390 XP_046390 G/T S662A plus 23767757 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 19q13.33 zinc finger protein 473 33061 rs10426374 ZNF473 25888 19 55241496 XM_046390 XP_046390 G/T S662A plus 23767757 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13.33 zinc finger protein 473 33062 rs10426545 CPAMD8 27151 19 16974083 NM_015692 NP_056507 A/G R251W plus 24093394 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 33063 rs10426545 CPAMD8 27151 19 16974083 NM_015692 NP_056507 A/G R251W plus 24093394 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 "by cluster,freq" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 33064 rs10426545 CPAMD8 27151 19 16974083 NM_015692 NP_056507 A/G R251W plus 24093394 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 19p13.12 "C3 and PZP-like, alpha-2-macroglobulin domain containing 8" 33065 rs10429965 NEK2 4751 1 208228893 NM_002497 NP_002488 C/T N354S plus 23874326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 1q32.2-q41 NIMA (never in mitosis gene a)-related kinase 2 33066 rs10429965 NEK2 4751 1 208228893 NM_002497 NP_002488 C/T N354S plus 23874326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 1q32.2-q41 NIMA (never in mitosis gene a)-related kinase 2 33067 rs10429965 NEK2 4751 1 208228893 NM_002497 NP_002488 C/T N354S plus 23874326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 1q32.2-q41 NIMA (never in mitosis gene a)-related kinase 2 33068 rs10447293 DDX46 9879 5 134141168 NM_014829 NP_055644 C/G E207Q plus 14777126 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 5q31.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 33069 rs10458896 DKFZP434G2226 81930 11 28014533 NM_031217 NP_112494 C/T I735V plus 24149181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 11p14.1 kinesin family member 18A 33070 rs10458896 DKFZP434G2226 81930 11 28014533 NM_031217 NP_112494 C/T I735V plus 24149181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.37 123 "by doubleHit,freq,cluster" 11p14.1 kinesin family member 18A 33071 rs10458896 DKFZP434G2226 81930 11 28014533 NM_031217 NP_112494 C/T I735V plus 24149181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 11p14.1 kinesin family member 18A 33072 rs10459504 POLE2 5427 14 49187820 NM_002692 NP_002683 G/T T413P plus 14805050 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 119 HapMap 14q21-q22 "polymerase (DNA directed), epsilon 2 (p59 subunit)" 33073 rs10462020 PER3 8863 1 7814949 NM_016831 NP_058515 G/T V639G plus 14811422 1078 PGP PGP-CAUCASIAN North American Caucasians 182 0.17 119 by freq 1p36.23 period homolog 3 (Drosophila) 33074 rs10462021 PER3 8863 1 7831399 NM_016831 NP_058515 A/G H1149R plus 14811424 1078 PGP PGP-CAUCASIAN North American Caucasians 182 0.2 119 by freq 1p36.23 period homolog 3 (Drosophila) 33075 rs10464523 AASS 10157 7 121332789 NM_005763 NP_005754 C/T E497K plus 14817400 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 119 HapMap 7q31.3 aminoadipate-semialdehyde synthase 33076 rs10465613 CHS1 1130 1 232295427 NM_000081 NP_000072 C/T S1017N plus 14819828 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 119 "HapMap,doubleHit" 1q42.1-q42.2 Chediak-Higashi syndrome 1 33077 rs10467770 CHD8 57680 14 20969471 XM_370738 XP_370738 C/T V58M plus 14826604 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.26 119 "HapMap,doubleHit,freq" 14q11.2 helicase with SNF2 domain 1 33078 rs10471773 KENAE 202243 5 68651835 NM_176816 NP_789786 A/G R97X plus 14837509 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 119 "HapMap,freq" 5q13.1 Kenae 33079 rs10471774 KENAE 202243 5 68652087 NM_176816 NP_789786 C/T V13M plus 14837510 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.41 119 "HapMap,freq" 5q13.1 Kenae 33080 rs10475633 RAP80 51720 5 176268191 NM_016290 NP_057374 C/T G596E plus 23338024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q35.3 receptor associated protein 80 33081 rs10475633 RAP80 51720 5 176268191 NM_016290 NP_057374 C/T G596E plus 23338024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 "by cluster,freq" 5q35.3 receptor associated protein 80 33082 rs10475633 RAP80 51720 5 176268191 NM_016290 NP_057374 C/T G596E plus 23338024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q35.3 receptor associated protein 80 33083 rs10482810 TGFB2 7042 1 214995927 NM_003238 NP_003229 C/G V207L plus 14865977 693 EGP_SNPS PDR90 NIHPDR 172 0.01 120 "by cluster,freq" 1q41 "transforming growth factor, beta 2" 33084 rs10482810 TGFB2 7042 1 214995927 NM_003238 NP_003229 C/G V207L plus 15356657 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 1 120 "by cluster,freq" 1q41 "transforming growth factor, beta 2" 33085 rs10482810 TGFB2 7042 1 214995927 NM_003238 NP_003229 C/G V207L plus 15356657 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 "by cluster,freq" 1q41 "transforming growth factor, beta 2" 33086 rs10482810 TGFB2 7042 1 214995927 NM_003238 NP_003229 C/G V207L plus 15356657 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 1q41 "transforming growth factor, beta 2" 33087 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 14870164 901 AFFY AfAm 12 0.08 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33088 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 14870164 902 AFFY Caucasian 24 0.33 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33089 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 14870164 903 AFFY Asian 12 1 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33090 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 14870164 904 AFFY CEPH 12 1 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33091 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 14870164 905 AFFY PDpanel 48 0.17 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33092 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 24439091 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33093 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 24439091 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33094 rs10484847 DNAH8 1769 6 39088059 NM_001371 NP_001362 C/T I4271V minus 24439091 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 6p21.31-p21.1 "dynein, axonemal, heavy polypeptide 8" 33095 rs10485183 SART2 29940 6 116827180 NM_013352 NP_037484 C/T T25I plus 14870803 901 AFFY AfAm 12 0.08 119 by freq 6q22 squamous cell carcinoma antigen recognized by T cells 2 33096 rs10485183 SART2 29940 6 116827180 NM_013352 NP_037484 C/T T25I plus 14870803 902 AFFY Caucasian 20 0.2 119 by freq 6q22 squamous cell carcinoma antigen recognized by T cells 2 33097 rs10485183 SART2 29940 6 116827180 NM_013352 NP_037484 C/T T25I plus 14870803 903 AFFY Asian 12 1 119 by freq 6q22 squamous cell carcinoma antigen recognized by T cells 2 33098 rs10485183 SART2 29940 6 116827180 NM_013352 NP_037484 C/T T25I plus 14870803 904 AFFY CEPH 12 0.33 119 by freq 6q22 squamous cell carcinoma antigen recognized by T cells 2 33099 rs10485183 SART2 29940 6 116827180 NM_013352 NP_037484 C/T T25I plus 14870803 905 AFFY PDpanel 46 0.17 119 by freq 6q22 squamous cell carcinoma antigen recognized by T cells 2 33100 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 14874136 901 AFFY AfAm 12 0.33 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33101 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 14874136 902 AFFY Caucasian 24 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33102 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 14874136 903 AFFY Asian 12 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33103 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 14874136 904 AFFY CEPH 12 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33104 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 14874136 905 AFFY PDpanel 48 0.1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33105 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 23529194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33106 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 23529194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33107 rs10487647 PCLO 27445 7 82228039 XM_168530 XP_168530 A/G L1170P plus 23529194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33108 rs10487648 PCLO 27445 7 82228260 XM_168530 XP_168530 A/C F1096L plus 14874137 901 AFFY AfAm 12 1 119 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33109 rs10487648 PCLO 27445 7 82228260 XM_168530 XP_168530 A/C F1096L plus 14874137 902 AFFY Caucasian 20 0.05 119 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33110 rs10487648 PCLO 27445 7 82228260 XM_168530 XP_168530 A/C F1096L plus 14874137 903 AFFY Asian 10 1 119 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33111 rs10487648 PCLO 27445 7 82228260 XM_168530 XP_168530 A/C F1096L plus 14874137 904 AFFY CEPH 12 1 119 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33112 rs10487648 PCLO 27445 7 82228260 XM_168530 XP_168530 A/C F1096L plus 14874137 905 AFFY PDpanel 42 0.05 119 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33113 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 14876984 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33114 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 14876984 902 AFFY Caucasian 22 0.23 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33115 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 14876984 903 AFFY Asian 12 0.17 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33116 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 14876984 904 AFFY CEPH 12 0.42 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33117 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 14876984 905 AFFY PDpanel 46 0.24 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33118 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 23875788 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33119 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 23875788 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33120 rs10489990 CD207 50489 2 70974303 NM_015717 NP_056532 A/G A55V plus 23875788 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 33121 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 14878795 901 AFFY AfAm 12 1 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33122 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 14878795 902 AFFY Caucasian 24 0.04 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33123 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 14878795 903 AFFY Asian 12 0.17 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33124 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 14878795 904 AFFY CEPH 12 1 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33125 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 14878795 905 AFFY PDpanel 48 0.1 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33126 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 24124211 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33127 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 24124211 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33128 rs10491178 ABCA10 10349 17 64661568 NM_080282 NP_525021 C/T R1322X minus 24124211 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 17q24 "ATP-binding cassette, sub-family A (ABC1), member 10" 33129 rs10493753 SPATA1 64173 1 84703690 NM_022354 NP_071749 C/G V175L minus 14882791 901 AFFY AfAm 6 0.33 123 "by cluster,freq" 1p22.3 spermatogenesis associated 1 33130 rs10493753 SPATA1 64173 1 84703690 NM_022354 NP_071749 C/G V175L minus 14882791 902 AFFY Caucasian 24 1 123 "by cluster,freq" 1p22.3 spermatogenesis associated 1 33131 rs10493753 SPATA1 64173 1 84703690 NM_022354 NP_071749 C/G V175L minus 14882791 903 AFFY Asian 12 1 123 "by cluster,freq" 1p22.3 spermatogenesis associated 1 33132 rs10493753 SPATA1 64173 1 84703690 NM_022354 NP_071749 C/G V175L minus 14882791 904 AFFY CEPH 12 1 123 "by cluster,freq" 1p22.3 spermatogenesis associated 1 33133 rs10493753 SPATA1 64173 1 84703690 NM_022354 NP_071749 C/G V175L minus 14882791 905 AFFY PDpanel 40 0.08 123 "by cluster,freq" 1p22.3 spermatogenesis associated 1 33134 rs10493821 GBP3 2635 1 89187156 NM_018284 NP_060754 C/T V437M plus 14882878 901 AFFY AfAm 12 1 119 by freq 1p22.2 guanylate binding protein 3 33135 rs10493821 GBP3 2635 1 89187156 NM_018284 NP_060754 C/T V437M plus 14882878 902 AFFY Caucasian 24 0.38 119 by freq 1p22.2 guanylate binding protein 3 33136 rs10493821 GBP3 2635 1 89187156 NM_018284 NP_060754 C/T V437M plus 14882878 903 AFFY Asian 12 0.08 119 by freq 1p22.2 guanylate binding protein 3 33137 rs10493821 GBP3 2635 1 89187156 NM_018284 NP_060754 C/T V437M plus 14882878 904 AFFY CEPH 12 0.42 119 by freq 1p22.2 guanylate binding protein 3 33138 rs10493821 GBP3 2635 1 89187156 NM_018284 NP_060754 C/T V437M plus 14882878 905 AFFY PDpanel 48 0.13 119 by freq 1p22.2 guanylate binding protein 3 33139 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 14883431 901 AFFY AfAm 12 1 123 by freq 1p11.1 T-box 15 33140 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 14883431 902 AFFY Caucasian 24 0.13 123 by freq 1p11.1 T-box 15 33141 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 14883431 903 AFFY Asian 10 0.1 123 by freq 1p11.1 T-box 15 33142 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 14883431 904 AFFY CEPH 12 1 123 by freq 1p11.1 T-box 15 33143 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 14883431 905 AFFY PDpanel 46 0.04 123 by freq 1p11.1 T-box 15 33144 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 24617250 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1p11.1 T-box 15 33145 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 24617250 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p11.1 T-box 15 33146 rs10494217 TBX15 6913 1 119181230 XM_371284 XP_371284 G/T H50N plus 24617250 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p11.1 T-box 15 33147 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 14884176 901 AFFY AfAm 8 1 123 by freq 1q32 complement factor H-related 4 33148 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 14884176 902 AFFY Caucasian 24 0.04 123 by freq 1q32 complement factor H-related 4 33149 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 14884176 903 AFFY Asian 10 1 123 by freq 1q32 complement factor H-related 4 33150 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 14884176 904 AFFY CEPH 10 0.1 123 by freq 1q32 complement factor H-related 4 33151 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 14884176 905 AFFY PDpanel 40 0.08 123 by freq 1q32 complement factor H-related 4 33152 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 24285476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1q32 complement factor H-related 4 33153 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 24285476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1q32 complement factor H-related 4 33154 rs10494745 FHR-4 10877 1 193619114 NM_006684 NP_006675 A/G G306E plus 24285476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1q32 complement factor H-related 4 33155 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 14884183 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33156 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 14884183 902 AFFY Caucasian 24 1 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33157 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 14884183 903 AFFY Asian 12 1 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33158 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 14884183 904 AFFY CEPH 12 1 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33159 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 14884183 905 AFFY PDpanel 48 0.04 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33160 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 23194685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33161 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 23194685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33162 rs10494751 FRBZ1 360023 1 193900282 NM_194314 NP_919290 A/C D327Y plus 23194685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 1q31.3 FRBZ1 protein 33163 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 14885973 901 AFFY AfAm 12 1 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33164 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 14885973 902 AFFY Caucasian 24 0.21 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33165 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 14885973 903 AFFY Asian 6 0.5 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33166 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 14885973 904 AFFY CEPH 12 0.42 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33167 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 14885973 905 AFFY PDpanel 44 0.27 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33168 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 24157139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33169 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 24157139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33170 rs10495960 ALF 11036 2 48871683 NM_172196 NP_751946 A/G A444T plus 24157139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 2p21 TFIIA-alpha/beta-like factor 33171 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 14886329 901 AFFY AfAm 12 1 123 by freq 2p13 Alstrom syndrome 1 33172 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 14886329 902 AFFY Caucasian 24 0.25 123 by freq 2p13 Alstrom syndrome 1 33173 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 14886329 903 AFFY Asian 12 1 123 by freq 2p13 Alstrom syndrome 1 33174 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 14886329 904 AFFY CEPH 12 0.42 123 by freq 2p13 Alstrom syndrome 1 33175 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 14886329 905 AFFY PDpanel 48 0.06 123 by freq 2p13 Alstrom syndrome 1 33176 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 24642266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 2p13 Alstrom syndrome 1 33177 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 24642266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 2p13 Alstrom syndrome 1 33178 rs10496192 ALMS1 7840 2 73591521 NM_015120 NP_055935 C/T I2070T plus 24642266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p13 Alstrom syndrome 1 33179 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 14888111 901 AFFY AfAm 12 1 123 by freq 2q31.1 methionine aminopeptidase 1D 33180 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 14888111 902 AFFY Caucasian 24 1 123 by freq 2q31.1 methionine aminopeptidase 1D 33181 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 14888111 903 AFFY Asian 12 0.33 123 by freq 2q31.1 methionine aminopeptidase 1D 33182 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 14888111 904 AFFY CEPH 12 1 123 by freq 2q31.1 methionine aminopeptidase 1D 33183 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 14888111 905 AFFY PDpanel 48 0.13 123 by freq 2q31.1 methionine aminopeptidase 1D 33184 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 24168827 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q31.1 methionine aminopeptidase 1D 33185 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 24168827 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 2q31.1 methionine aminopeptidase 1D 33186 rs10497377 MAP1D 254042 2 172751733 NM_199227 NP_954697 G/T G14V plus 24168827 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 2q31.1 methionine aminopeptidase 1D 33187 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 14888170 901 AFFY AfAm 10 1 123 by freq 2q31.1 secernin 3 33188 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 14888170 902 AFFY Caucasian 20 0.05 123 by freq 2q31.1 secernin 3 33189 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 14888170 903 AFFY Asian 12 0.08 123 by freq 2q31.1 secernin 3 33190 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 14888170 904 AFFY CEPH 8 1 123 by freq 2q31.1 secernin 3 33191 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 14888170 905 AFFY PDpanel 48 0.1 123 by freq 2q31.1 secernin 3 33192 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 24326544 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 2q31.1 secernin 3 33193 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 24326544 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2q31.1 secernin 3 33194 rs10497410 SCRN3 79634 2 175088570 NM_024583 NP_078859 C/T D18N minus 24326544 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 2q31.1 secernin 3 33195 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 14888318 901 AFFY AfAm 12 0.42 123 "by cluster,freq" 2q31 titin 33196 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 14888318 902 AFFY Caucasian 24 0.08 123 "by cluster,freq" 2q31 titin 33197 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 14888318 903 AFFY Asian 10 0.2 123 "by cluster,freq" 2q31 titin 33198 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 14888318 904 AFFY CEPH 10 0.3 123 "by cluster,freq" 2q31 titin 33199 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 14888318 905 AFFY PDpanel 48 0.46 123 "by cluster,freq" 2q31 titin 33200 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 23705391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 2q31 titin 33201 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 23705391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by cluster,freq" 2q31 titin 33202 rs10497520 TTN 7273 2 179470361 NM_133379 NP_596870 C/T K1201E plus 23705391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 2q31 titin 33203 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 14890384 901 AFFY AfAm 12 0.08 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33204 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 14890384 902 AFFY Caucasian 22 0.14 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33205 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 14890384 903 AFFY Asian 12 1 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33206 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 14890384 904 AFFY CEPH 12 1 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33207 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 14890384 905 AFFY PDpanel 48 0.17 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33208 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 24689856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33209 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 24689856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33210 rs10498796 TINAG 27283 6 54327285 NM_014464 NP_055279 A/G R381H plus 24689856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 33211 rs10500209 ZNF439 90594 19 11840164 NM_152262 NP_689475 A/G L427S minus 14892382 901 AFFY AfAm 12 0.08 119 by freq 19p13.2 zinc finger protein 439 33212 rs10500209 ZNF439 90594 19 11840164 NM_152262 NP_689475 A/G L427S minus 14892382 902 AFFY Caucasian 24 0.17 119 by freq 19p13.2 zinc finger protein 439 33213 rs10500209 ZNF439 90594 19 11840164 NM_152262 NP_689475 A/G L427S minus 14892382 903 AFFY Asian 10 1 119 by freq 19p13.2 zinc finger protein 439 33214 rs10500209 ZNF439 90594 19 11840164 NM_152262 NP_689475 A/G L427S minus 14892382 904 AFFY CEPH 12 1 119 by freq 19p13.2 zinc finger protein 439 33215 rs10500209 ZNF439 90594 19 11840164 NM_152262 NP_689475 A/G L427S minus 14892382 905 AFFY PDpanel 48 0.15 119 by freq 19p13.2 zinc finger protein 439 33216 rs10500210 ZNF442 79973 19 12322072 NM_030824 NP_110451 A/G R443C plus 14892384 901 AFFY AfAm 12 0.33 120 by freq 19p13.2 zinc finger protein 442 33217 rs10500210 ZNF442 79973 19 12322072 NM_030824 NP_110451 A/G R443C plus 14892384 902 AFFY Caucasian 24 1 120 by freq 19p13.2 zinc finger protein 442 33218 rs10500210 ZNF442 79973 19 12322072 NM_030824 NP_110451 A/G R443C plus 14892384 903 AFFY Asian 12 1 120 by freq 19p13.2 zinc finger protein 442 33219 rs10500210 ZNF442 79973 19 12322072 NM_030824 NP_110451 A/G R443C plus 14892384 904 AFFY CEPH 12 1 120 by freq 19p13.2 zinc finger protein 442 33220 rs10500210 ZNF442 79973 19 12322072 NM_030824 NP_110451 A/G R443C plus 14892384 905 AFFY PDpanel 48 0.08 120 by freq 19p13.2 zinc finger protein 442 33221 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 14892545 901 AFFY AfAm 12 0.42 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33222 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 14892545 902 AFFY Caucasian 24 0.33 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33223 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 14892545 903 AFFY Asian 12 0.42 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33224 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 14892545 904 AFFY CEPH 12 0.25 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33225 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 14892545 905 AFFY PDpanel 48 0.42 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33226 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 23776909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33227 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 23776909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33228 rs10500311 ZNF615 284370 19 57189755 NM_198480 NP_940882 A/G T129M plus 23776909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 19q13.41 zinc finger protein 615 33229 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 14892929 901 AFFY AfAm 12 1 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33230 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 14892929 902 AFFY Caucasian 24 0.08 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33231 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 14892929 903 AFFY Asian 12 1 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33232 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 14892929 904 AFFY CEPH 12 1 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33233 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 14892929 905 AFFY PDpanel 48 0.04 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33234 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 24429756 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33235 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 24429756 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33236 rs10500557 ZNF19 7567 16 70067280 NM_006961 NP_008892 C/T R224Q plus 24429756 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q22 zinc finger protein 19 (KOX 12) 33237 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 14893030 901 AFFY AfAm 8 0.13 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33238 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 14893030 902 AFFY Caucasian 22 0.18 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33239 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 14893030 903 AFFY Asian 10 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33240 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 14893030 904 AFFY CEPH 12 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33241 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 14893030 905 AFFY PDpanel 40 0.1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33242 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 23554938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33243 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 23554938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33244 rs10500635 OR51M1 390059 11 5343244 XM_372354 XP_372354 A/G G69E plus 23554938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily M, member 1" 33245 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 14894860 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33246 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 14894860 902 AFFY Caucasian 22 0.23 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33247 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 14894860 903 AFFY Asian 12 0.17 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33248 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 14894860 904 AFFY CEPH 12 1 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33249 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 14894860 905 AFFY PDpanel 40 0.18 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33250 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 24071430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33251 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 24071430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33252 rs10502001 MMP7 4316 11 101903803 NM_002423 NP_002414 C/T R77H plus 24071430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 11q21-q22 "matrix metalloproteinase 7 (matrilysin, uterine)" 33253 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 14897766 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33254 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 14897766 902 AFFY Caucasian 24 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33255 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 14897766 903 AFFY Asian 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33256 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 14897766 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33257 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 14897766 905 AFFY PDpanel 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33258 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 17233890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33259 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 24488348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33260 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 24488348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33261 rs10503929 NRG1 3084 8 32733525 NM_013956 NP_039250 C/T M294T plus 24488348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33262 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 14897766 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33263 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 14897766 902 AFFY Caucasian 24 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33264 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 14897766 903 AFFY Asian 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33265 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 14897766 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33266 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 14897766 905 AFFY PDpanel 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33267 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 17233890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33268 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 24488348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33269 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 24488348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33270 rs10503929 NRG1 3084 8 32733525 NM_013957 NP_039251 C/T M286T plus 24488348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33271 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 14897766 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33272 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 14897766 902 AFFY Caucasian 24 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33273 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 14897766 903 AFFY Asian 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33274 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 14897766 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33275 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 14897766 905 AFFY PDpanel 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33276 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 17233890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33277 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 24488348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33278 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 24488348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33279 rs10503929 NRG1 3084 8 32733525 NM_013960 NP_039254 C/T M289T plus 24488348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33280 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 14897766 901 AFFY AfAm 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33281 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 14897766 902 AFFY Caucasian 24 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33282 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 14897766 903 AFFY Asian 12 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33283 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 14897766 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33284 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 14897766 905 AFFY PDpanel 48 0.1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33285 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 17233890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33286 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 24488348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33287 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 24488348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33288 rs10503929 NRG1 3084 8 32733525 NM_013964 NP_039258 C/T M289T plus 24488348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 8p21-p12 neuregulin 1 33289 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 14900751 901 AFFY AfAm 12 1 123 by freq 12p12.3 "phospholipase C, zeta 1" 33290 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 14900751 902 AFFY Caucasian 22 0.09 123 by freq 12p12.3 "phospholipase C, zeta 1" 33291 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 14900751 903 AFFY Asian 12 1 123 by freq 12p12.3 "phospholipase C, zeta 1" 33292 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 14900751 904 AFFY CEPH 12 1 123 by freq 12p12.3 "phospholipase C, zeta 1" 33293 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 14900751 905 AFFY PDpanel 46 0.02 123 by freq 12p12.3 "phospholipase C, zeta 1" 33294 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 24350255 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 12p12.3 "phospholipase C, zeta 1" 33295 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 24350255 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12p12.3 "phospholipase C, zeta 1" 33296 rs10505830 PLCZ1 89869 12 18732382 NM_033123 NP_149114 A/G S500L plus 24350255 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p12.3 "phospholipase C, zeta 1" 33297 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 14902375 901 AFFY AfAm 12 0.25 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33298 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 14902375 902 AFFY Caucasian 24 1 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33299 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 14902375 903 AFFY Asian 10 0.1 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33300 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 14902375 904 AFFY CEPH 8 1 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33301 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 14902375 905 AFFY PDpanel 40 0.23 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33302 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 23988967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33303 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 23988967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33304 rs10507047 FGD6 55785 12 94106758 XM_370702 XP_370702 C/T Q257R plus 23988967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 12q23.1 "FYVE, RhoGEF and PH domain containing 6" 33305 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 14902379 901 AFFY AfAm 12 1 123 by freq 12q23.1 transmembrane protein vezatin 33306 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 14902379 902 AFFY Caucasian 22 0.05 123 by freq 12q23.1 transmembrane protein vezatin 33307 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 14902379 903 AFFY Asian 12 1 123 by freq 12q23.1 transmembrane protein vezatin 33308 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 14902379 904 AFFY CEPH 12 1 123 by freq 12q23.1 transmembrane protein vezatin 33309 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 14902379 905 AFFY PDpanel 48 0.06 123 by freq 12q23.1 transmembrane protein vezatin 33310 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 24429459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12q23.1 transmembrane protein vezatin 33311 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 24429459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q23.1 transmembrane protein vezatin 33312 rs10507051 VEZATIN 55591 12 94184065 NM_017599 NP_060069 A/G V448I plus 24429459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q23.1 transmembrane protein vezatin 33313 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 14906289 901 AFFY AfAm 12 0.25 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33314 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 14906289 902 AFFY Caucasian 24 0.04 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33315 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 14906289 903 AFFY Asian 12 1 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33316 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 14906289 904 AFFY CEPH 12 0.17 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33317 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 14906289 905 AFFY PDpanel 48 0.02 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33318 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 23606676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33319 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 23606676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33320 rs10509332 UNC5B 219699 10 72721446 NM_170744 NP_734465 A/G A516T plus 23606676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 10q22.2 unc-5 homolog B (C. elegans) 33321 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 14906800 901 AFFY AfAm 12 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33322 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 14906800 902 AFFY Caucasian 24 0.13 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33323 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 14906800 903 AFFY Asian 12 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33324 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 14906800 904 AFFY CEPH 12 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33325 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 14906800 905 AFFY PDpanel 48 0.02 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33326 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 16356494 693 EGP_SNPS PDR90 NIHPDR 180 0.05 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33327 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 24554781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33328 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 24554781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33329 rs10509681 CYP2C8 1558 10 96788739 NM_000770 NP_000761 C/T K399R plus 24554781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 33330 rs10511670 FAM29A 54801 9 19048743 NM_017645 NP_060115 C/G H674Q plus 14909961 901 AFFY AfAm 12 0.17 119 by freq 9p22.1 "family with sequence similarity 29, member A" 33331 rs10511670 FAM29A 54801 9 19048743 NM_017645 NP_060115 C/G H674Q plus 14909961 902 AFFY Caucasian 24 1 119 by freq 9p22.1 "family with sequence similarity 29, member A" 33332 rs10511670 FAM29A 54801 9 19048743 NM_017645 NP_060115 C/G H674Q plus 14909961 903 AFFY Asian 10 0.1 119 by freq 9p22.1 "family with sequence similarity 29, member A" 33333 rs10511670 FAM29A 54801 9 19048743 NM_017645 NP_060115 C/G H674Q plus 14909961 904 AFFY CEPH 12 1 119 by freq 9p22.1 "family with sequence similarity 29, member A" 33334 rs10511670 FAM29A 54801 9 19048743 NM_017645 NP_060115 C/G H674Q plus 14909961 905 AFFY PDpanel 38 0.03 119 by freq 9p22.1 "family with sequence similarity 29, member A" 33335 rs10512330 OR13C3 138803 9 104377772 XM_071097 XP_071097 G/T K263T plus 14910896 901 AFFY AfAm 12 0.08 119 by freq 9q31.3 "olfactory receptor, family 13, subfamily C, member 3" 33336 rs10512330 OR13C3 138803 9 104377772 XM_071097 XP_071097 G/T K263T plus 14910896 902 AFFY Caucasian 24 1 119 by freq 9q31.3 "olfactory receptor, family 13, subfamily C, member 3" 33337 rs10512330 OR13C3 138803 9 104377772 XM_071097 XP_071097 G/T K263T plus 14910896 903 AFFY Asian 12 1 119 by freq 9q31.3 "olfactory receptor, family 13, subfamily C, member 3" 33338 rs10512330 OR13C3 138803 9 104377772 XM_071097 XP_071097 G/T K263T plus 14910896 904 AFFY CEPH 12 1 119 by freq 9q31.3 "olfactory receptor, family 13, subfamily C, member 3" 33339 rs10512330 OR13C3 138803 9 104377772 XM_071097 XP_071097 G/T K263T plus 14910896 905 AFFY PDpanel 48 0.04 119 by freq 9q31.3 "olfactory receptor, family 13, subfamily C, member 3" 33340 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 14911353 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33341 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 14911353 902 AFFY Caucasian 24 1 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33342 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 14911353 903 AFFY Asian 12 1 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33343 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 14911353 904 AFFY CEPH 12 1 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33344 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 14911353 905 AFFY PDpanel 48 0.06 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33345 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 23594122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33346 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 23594122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33347 rs10512599 ICT1 3396 17 70527397 NM_001545 NP_001536 C/G L77F minus 23594122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q25.2 immature colon carcinoma transcript 1 33348 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 14911603 901 AFFY AfAm 12 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33349 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 14911603 902 AFFY Caucasian 24 0.08 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33350 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 14911603 903 AFFY Asian 10 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33351 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 14911603 904 AFFY CEPH 8 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33352 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 14911603 905 AFFY PDpanel 44 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33353 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 24415924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33354 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 24415924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33355 rs10512747 CARD6 84674 5 40877498 NM_032587 NP_115976 C/T S86L plus 24415924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13.1 "caspase recruitment domain family, member 6" 33356 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 14912200 901 AFFY AfAm 12 0.08 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33357 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 14912200 902 AFFY Caucasian 24 0.42 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33358 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 14912200 903 AFFY Asian 12 0.17 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33359 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 14912200 904 AFFY CEPH 12 0.33 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33360 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 14912200 905 AFFY PDpanel 42 0.07 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33361 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 24419455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33362 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 24419455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33363 rs10513155 DNAH5 1767 5 13841886 NM_001369 NP_001360 A/C L2862F plus 24419455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 33364 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 14913043 901 AFFY AfAm 12 0.25 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33365 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 14913043 902 AFFY Caucasian 24 0.08 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33366 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 14913043 903 AFFY Asian 8 0.13 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33367 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 14913043 904 AFFY CEPH 12 1 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33368 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 14913043 905 AFFY PDpanel 38 0.11 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33369 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 24221186 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33370 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 24221186 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33371 rs10513680 SAMD7 344658 3 171127412 NM_182610 NP_872416 C/G E220D plus 24221186 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 3q26.31 sterile alpha motif domain containing 7 33372 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 14913199 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33373 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 14913199 902 AFFY Caucasian 24 1 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33374 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 14913199 903 AFFY Asian 10 0.1 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33375 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 14913199 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33376 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 14913199 905 AFFY PDpanel 46 0.15 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33377 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 16303268 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33378 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 23890007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33379 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 23890007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33380 rs10513762 MRPL47 57129 3 180789477 NM_020409 NP_065142 C/T R213H plus 23890007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33381 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 14913199 901 AFFY AfAm 12 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33382 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 14913199 902 AFFY Caucasian 24 1 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33383 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 14913199 903 AFFY Asian 10 0.1 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33384 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 14913199 904 AFFY CEPH 12 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33385 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 14913199 905 AFFY PDpanel 46 0.15 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33386 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 16303268 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33387 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 23890007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33388 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 23890007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33389 rs10513762 MRPL47 57129 3 180789477 NM_177988 NP_817125 C/T R103H plus 23890007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "HapMap,doubleHit,freq,cluster" 3q27.1 mitochondrial ribosomal protein L47 33390 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 14917431 901 AFFY AfAm 12 0.17 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33391 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 14917431 902 AFFY Caucasian 24 0.29 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33392 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 14917431 903 AFFY Asian 12 0.33 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33393 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 14917431 904 AFFY CEPH 12 0.25 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33394 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 14917431 905 AFFY PDpanel 46 0.24 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33395 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 24318130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33396 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 24318130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33397 rs10516487 BANK1 55024 4 103108254 NM_017935 NP_060405 C/T R61H minus 24318130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 4q24 B-cell scaffold protein with ankyrin repeats 1 33398 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 14917871 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33399 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 14917871 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33400 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 14917871 903 AFFY Asian 12 0.42 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33401 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 14917871 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33402 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 14917871 905 AFFY PDpanel 48 0.13 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33403 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 24246825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33404 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 24246825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33405 rs10516782 PTPN13 5783 4 88048177 NM_006264 NP_006255 A/G I1503M plus 24246825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33406 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 14917871 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33407 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 14917871 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33408 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 14917871 903 AFFY Asian 12 0.42 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33409 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 14917871 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33410 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 14917871 905 AFFY PDpanel 48 0.13 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33411 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 24246825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33412 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 24246825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33413 rs10516782 PTPN13 5783 4 88048177 NM_080683 NP_542414 A/G I1522M plus 24246825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33414 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 14917871 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33415 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 14917871 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33416 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 14917871 903 AFFY Asian 12 0.42 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33417 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 14917871 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33418 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 14917871 905 AFFY PDpanel 48 0.13 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33419 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 24246825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33420 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 24246825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33421 rs10516782 PTPN13 5783 4 88048177 NM_080684 NP_542415 A/G I1331M plus 24246825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33422 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 14917871 901 AFFY AfAm 12 0.08 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33423 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 14917871 902 AFFY Caucasian 22 0.14 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33424 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 14917871 903 AFFY Asian 12 0.42 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33425 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 14917871 904 AFFY CEPH 12 1 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33426 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 14917871 905 AFFY PDpanel 48 0.13 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33427 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 24246825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33428 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 24246825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33429 rs10516782 PTPN13 5783 4 88048177 NM_080685 NP_542416 A/G I1527M plus 24246825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 33430 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 14921151 901 AFFY AfAm 12 0.17 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33431 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 14921151 902 AFFY Caucasian 24 1 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33432 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 14921151 903 AFFY Asian 10 1 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33433 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 14921151 904 AFFY CEPH 10 1 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33434 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 14921151 905 AFFY PDpanel 46 0.07 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33435 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 23464134 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33436 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 23464134 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33437 rs10519020 SLC28A2 9153 15 43344610 NM_004212 NP_004203 C/G S245T plus 23464134 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 33438 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 14924193 901 AFFY AfAm 12 0.25 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33439 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 14924193 902 AFFY Caucasian 22 1 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33440 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 14924193 903 AFFY Asian 10 1 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33441 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 14924193 904 AFFY CEPH 12 1 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33442 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 14924193 905 AFFY PDpanel 48 0.08 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33443 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 23784519 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33444 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 23784519 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33445 rs10521092 IKBKAP 8518 9 108764684 NM_003640 NP_003631 A/T M182K plus 23784519 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33446 rs10733133 NID 4811 1 232534814 NM_002508 NP_002499 C/T V246I plus 23195534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q43 nidogen (enactin) 33447 rs10733133 NID 4811 1 232534814 NM_002508 NP_002499 C/T V246I plus 23195534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 1q43 nidogen (enactin) 33448 rs10733133 NID 4811 1 232534814 NM_002508 NP_002499 C/T V246I plus 23195534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 1q43 nidogen (enactin) 33449 rs10735005 CACNA2D4 93589 12 1865664 NM_172364 NP_758952 C/T I327V plus 15927630 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,doubleHit,freq,cluster" 12p13.33 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" 33450 rs10735005 CACNA2D4 93589 12 1865664 NM_172364 NP_758952 C/T I327V plus 24611009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "HapMap,doubleHit,freq,cluster" 12p13.33 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" 33451 rs10735005 CACNA2D4 93589 12 1865664 NM_172364 NP_758952 C/T I327V plus 24611009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 12p13.33 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" 33452 rs10735005 CACNA2D4 93589 12 1865664 NM_172364 NP_758952 C/T I327V plus 24611009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 12p13.33 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" 33453 rs10735810 VDR 7421 12 46559162 NM_000376 NP_000367 A/G M1T plus 16359158 693 EGP_SNPS PDR90 NIHPDR 180 0.31 121 "by doubleHit,freq,cluster" 12q12-q14 "vitamin D (1,25- dihydroxyvitamin D3) receptor" 33454 rs10735810 VDR 7421 12 46559162 NM_000376 NP_000367 A/G M1T plus 20418675 865 PHARMGKB_PAAR-SJCRH PA200426 598 0.32 121 "by doubleHit,freq,cluster" 12q12-q14 "vitamin D (1,25- dihydroxyvitamin D3) receptor" 33455 rs10739614 OR1L8 138881 9 122409679 XM_071150 XP_071150 C/G R211P plus 24519525 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33456 rs10739614 OR1L8 138881 9 122409679 XM_071150 XP_071150 C/G R211P plus 24519525 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33457 rs10739614 OR1L8 138881 9 122409679 XM_071150 XP_071150 C/G R211P plus 24519525 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33458 rs10743597 A2M 2 12 9123535 NM_000014 NP_000005 A/G I1000V minus 23785166 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 12p13.3-p12.3 alpha-2-macroglobulin 33459 rs10743597 A2M 2 12 9123535 NM_000014 NP_000005 A/G I1000V minus 23785166 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 12p13.3-p12.3 alpha-2-macroglobulin 33460 rs10743597 A2M 2 12 9123535 NM_000014 NP_000005 A/G I1000V minus 23785166 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 12p13.3-p12.3 alpha-2-macroglobulin 33461 rs10743597 A2M 2 12 9123535 NM_000014 NP_000005 A/G I1000V minus 24796442 1303 SEQUENOM CEPH CEPH (92) 184 0.25 123 "by doubleHit,freq,cluster" 12p13.3-p12.3 alpha-2-macroglobulin 33462 rs10749138 NRAP 4892 10 115360264 NM_006175 NP_006166 C/T I1148V plus 24123178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33463 rs10749138 NRAP 4892 10 115360264 NM_006175 NP_006166 C/T I1148V plus 24123178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33464 rs10749138 NRAP 4892 10 115360264 NM_006175 NP_006166 C/T I1148V plus 24123178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33465 rs10749138 NRAP 4892 10 115360264 NM_198060 NP_932326 C/T I1183V plus 24123178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33466 rs10749138 NRAP 4892 10 115360264 NM_198060 NP_932326 C/T I1183V plus 24123178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33467 rs10749138 NRAP 4892 10 115360264 NM_198060 NP_932326 C/T I1183V plus 24123178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33468 rs10749920 SLAC2-B 23086 11 107888886 NM_015065 NP_055880 A/G L853P plus 23619589 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33469 rs10749920 SLAC2-B 23086 11 107888886 NM_015065 NP_055880 A/G L853P plus 23619589 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33470 rs10749920 SLAC2-B 23086 11 107888886 NM_015065 NP_055880 A/G L853P plus 23619589 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33471 rs10759326 IKBKAP 8518 9 108739038 NM_003640 NP_003631 G/T I816L plus 23784454 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33472 rs10759326 IKBKAP 8518 9 108739038 NM_003640 NP_003631 G/T I816L plus 23784454 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33473 rs10759326 IKBKAP 8518 9 108739038 NM_003640 NP_003631 G/T I816L plus 23784454 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33474 rs10768450 OR51L1 119682 11 4977408 XM_061614 XP_061614 C/T A207V plus 23552069 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily L, member 1" 33475 rs10768450 OR51L1 119682 11 4977408 XM_061614 XP_061614 C/T A207V plus 23552069 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily L, member 1" 33476 rs10768450 OR51L1 119682 11 4977408 XM_061614 XP_061614 C/T A207V plus 23552069 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily L, member 1" 33477 rs10771314 TM7SF3 51768 12 27034775 NM_016551 NP_057635 A/G P248L plus 18506609 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,doubleHit,freq" 12q11-q12 transmembrane 7 superfamily member 3 33478 rs10774775 MMAB 326625 12 108473950 NM_052845 NP_443077 C/T R19H plus 28459424 549 KYUGEN CP CEPH (78) 156 0.29 123 "by doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 33479 rs10774775 MMAB 326625 12 108473950 NM_052845 NP_443077 C/T R19H plus 28459424 1335 KYUGEN JPK2 Japanese (100) 200 0.05 123 "by doubleHit,freq,cluster" 12q24 methylmalonic aciduria (cobalamin deficiency) type B 33480 rs10783528 KRT1B 374454 12 51374751 NM_175078 NP_778253 C/T D336N plus 16205031 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,doubleHit,freq,cluster" 12q13.13 keratin 1B 33481 rs10787428 GPAM 57678 10 113925369 NM_020918 NP_065969 C/T E131G plus 23630682 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 33482 rs10787428 GPAM 57678 10 113925369 NM_020918 NP_065969 C/T E131G plus 23630682 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 33483 rs10787428 GPAM 57678 10 113925369 NM_020918 NP_065969 C/T E131G plus 23630682 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q25.3 "glycerol-3-phosphate acyltransferase, mitochondrial" 33484 rs10790610 OR8D4 338662 11 123282946 XM_291838 XP_291838 C/T F200L plus 24590568 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 33485 rs10790610 OR8D4 338662 11 123282946 XM_291838 XP_291838 C/T F200L plus 24590568 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 33486 rs10790610 OR8D4 338662 11 123282946 XM_291838 XP_291838 C/T F200L plus 24590568 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 33487 rs10791961 OR8U1 219417 11 55900010 XM_166805 XP_166805 C/G S398C plus 23605541 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 33488 rs10791961 OR8U1 219417 11 55900010 XM_166805 XP_166805 C/G S398C plus 23605541 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 33489 rs10791961 OR8U1 219417 11 55900010 XM_166805 XP_166805 C/G S398C plus 23605541 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 33490 rs10792156 UNQ6469 387772 11 57791119 NM_207374 NP_997257 C/T R263Q plus 23592658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 11q12.1 olfactory receptor 33491 rs10792156 UNQ6469 387772 11 57791119 NM_207374 NP_997257 C/T R263Q plus 23592658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 "by doubleHit,freq,cluster" 11q12.1 olfactory receptor 33492 rs10792156 UNQ6469 387772 11 57791119 NM_207374 NP_997257 C/T R263Q plus 23592658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 11q12.1 olfactory receptor 33493 rs10793975 DKFZp434P0216 256158 9 130313864 XM_175125 XP_175125 A/G R2571H plus 24092467 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 9q34.2 hemicentin-2 33494 rs10793975 DKFZp434P0216 256158 9 130313864 XM_175125 XP_175125 A/G R2571H plus 24092467 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 "by doubleHit,freq,cluster" 9q34.2 hemicentin-2 33495 rs10793975 DKFZp434P0216 256158 9 130313864 XM_175125 XP_175125 A/G R2571H plus 24092467 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 9q34.2 hemicentin-2 33496 rs10794324 TP53I5 338440 11 418489 XM_374860 XP_374860 C/T I391V plus 16001663 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 120 "HapMap,doubleHit,freq,cluster" 11p15.5 tumor protein p53 inducible protein 5 33497 rs10795446 CUBN 8029 10 17187527 NM_001081 NP_001072 G/T P389T plus 18655303 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 123 "HapMap,doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 33498 rs10795446 CUBN 8029 10 17187527 NM_001081 NP_001072 G/T P389T plus 24796398 1303 SEQUENOM CEPH CEPH (92) 184 0.27 123 "HapMap,doubleHit,freq,cluster" 10p12.31 cubilin (intrinsic factor-cobalamin receptor) 33499 rs10797300 SULT1A2 6799 16 28514697 NM_001054 NP_001045 C/T P19L minus 16341414 1166 PHARMGKB_PPII PA128747821 240 0.1 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 33500 rs10797300 SULT1A2 6799 16 28514697 NM_177528 NP_803564 C/T P19L minus 16341414 1166 PHARMGKB_PPII PA128747821 240 0.1 120 "by doubleHit,freq,cluster" 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 33501 rs10798333 TNN 63923 1 171824364 XM_040527 XP_040527 C/T T941M plus 24632502 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 1q23-q24 tenascin N 33502 rs10798333 TNN 63923 1 171824364 XM_040527 XP_040527 C/T T941M plus 24632502 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 "by doubleHit,freq,cluster" 1q23-q24 tenascin N 33503 rs10798333 TNN 63923 1 171824364 XM_040527 XP_040527 C/T T941M plus 24632502 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 1q23-q24 tenascin N 33504 rs10798885 COL16A1 1307 1 31834588 NM_001856 NP_001847 G/T T62K plus 24253942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 1p35-p34 "collagen, type XVI, alpha 1" 33505 rs10798885 COL16A1 1307 1 31834588 NM_001856 NP_001847 G/T T62K plus 24253942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 1p35-p34 "collagen, type XVI, alpha 1" 33506 rs10798885 COL16A1 1307 1 31834588 NM_001856 NP_001847 G/T T62K plus 24253942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq,cluster" 1p35-p34 "collagen, type XVI, alpha 1" 33507 rs10799790 LUZP1 7798 1 23163459 NM_033631 NP_361013 C/T D868N plus 16395149 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 121 "HapMap,doubleHit,freq,cluster" 1p36 leucine zipper protein 1 33508 rs10801922 PTGFRN 5738 1 117241500 NM_020440 NP_065173 A/G V837I plus 24264587 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 1p13.1 prostaglandin F2 receptor negative regulator 33509 rs10801922 PTGFRN 5738 1 117241500 NM_020440 NP_065173 A/G V837I plus 24264587 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq" 1p13.1 prostaglandin F2 receptor negative regulator 33510 rs10801922 PTGFRN 5738 1 117241500 NM_020440 NP_065173 A/G V837I plus 24264587 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq" 1p13.1 prostaglandin F2 receptor negative regulator 33511 rs10814571 PAF53 64425 9 37493087 NM_022490 NP_071935 A/G R383K plus 24089930 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 9p13.1 RNA polymerase I associated factor 53 33512 rs10814571 PAF53 64425 9 37493087 NM_022490 NP_071935 A/G R383K plus 24089930 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 9p13.1 RNA polymerase I associated factor 53 33513 rs10814571 PAF53 64425 9 37493087 NM_022490 NP_071935 A/G R383K plus 24089930 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 9p13.1 RNA polymerase I associated factor 53 33514 rs10818708 OR1N1 138883 9 122369075 NM_012363 NP_036495 A/G P18S plus 24519384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 1" 33515 rs10818708 OR1N1 138883 9 122369075 NM_012363 NP_036495 A/G P18S plus 24519384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 1" 33516 rs10818708 OR1N1 138883 9 122369075 NM_012363 NP_036495 A/G P18S plus 24519384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily N, member 1" 33517 rs10818741 OR1L6 392390 9 122592349 XM_373315 XP_373315 C/G M223I plus 23343648 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 6" 33518 rs10818741 OR1L6 392390 9 122592349 XM_373315 XP_373315 C/G M223I plus 23343648 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 6" 33519 rs10818741 OR1L6 392390 9 122592349 XM_373315 XP_373315 C/G M223I plus 23343648 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 6" 33520 rs10821668 ANK3 288 10 61501277 NM_020987 NP_066267 C/T K3123R plus 24510382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 33521 rs10821668 ANK3 288 10 61501277 NM_020987 NP_066267 C/T K3123R plus 24510382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.03 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 33522 rs10821668 ANK3 288 10 61501277 NM_020987 NP_066267 C/T K3123R plus 24510382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 33523 rs10823148 MYPN 84665 10 69596340 NM_032578 NP_115967 C/G F628L plus 24556968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.38 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 33524 rs10823148 MYPN 84665 10 69596340 NM_032578 NP_115967 C/G F628L plus 24556968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 33525 rs10823148 MYPN 84665 10 69596340 NM_032578 NP_115967 C/G F628L plus 24556968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 10q22.1 myopalladin 33526 rs10823229 CXXC6 80312 10 70002586 NM_030625 NP_085128 A/G D162G plus 24064200 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq,cluster" 10q21 CXXC finger 6 33527 rs10823229 CXXC6 80312 10 70002586 NM_030625 NP_085128 A/G D162G plus 24064200 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,freq,cluster" 10q21 CXXC finger 6 33528 rs10823229 CXXC6 80312 10 70002586 NM_030625 NP_085128 A/G D162G plus 24064200 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 21 0.5 123 "by doubleHit,freq,cluster" 10q21 CXXC finger 6 33529 rs10823607 ADAMTS14 140766 10 72170769 NM_080722 NP_542453 C/T L590P plus 23603122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33530 rs10823607 ADAMTS14 140766 10 72170769 NM_080722 NP_542453 C/T L590P plus 23603122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33531 rs10823607 ADAMTS14 140766 10 72170769 NM_080722 NP_542453 C/T L590P plus 23603122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33532 rs10823607 ADAMTS14 140766 10 72170769 NM_139155 NP_631894 C/T L593P plus 23603122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33533 rs10823607 ADAMTS14 140766 10 72170769 NM_139155 NP_631894 C/T L593P plus 23603122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33534 rs10823607 ADAMTS14 140766 10 72170769 NM_139155 NP_631894 C/T L593P plus 23603122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 10q2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14" 33535 rs10825269 PCDH15 65217 10 55625616 NM_033056 NP_149045 C/T G380S plus 23479727 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 33536 rs10825269 PCDH15 65217 10 55625616 NM_033056 NP_149045 C/T G380S plus 23479727 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 33537 rs10825269 PCDH15 65217 10 55625616 NM_033056 NP_149045 C/T G380S plus 23479727 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 10p11.2-q21 protocadherin 15 33538 rs10828317 PIP5K2A 5305 10 22879634 NM_005028 NP_005019 C/T N251S plus 24008949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by doubleHit,freq,cluster" 10p12.32 "phosphatidylinositol-4-phosphate 5-kinase, type II, alpha" 33539 rs10828317 PIP5K2A 5305 10 22879634 NM_005028 NP_005019 C/T N251S plus 24008949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 10p12.32 "phosphatidylinositol-4-phosphate 5-kinase, type II, alpha" 33540 rs10828317 PIP5K2A 5305 10 22879634 NM_005028 NP_005019 C/T N251S plus 24008949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 10p12.32 "phosphatidylinositol-4-phosphate 5-kinase, type II, alpha" 33541 rs10828395 ARMC3 219681 10 23337258 NM_173081 NP_775104 A/G R626Q plus 24456071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 10p12.31 armadillo repeat containing 3 33542 rs10828395 ARMC3 219681 10 23337258 NM_173081 NP_775104 A/G R626Q plus 24456071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 10p12.31 armadillo repeat containing 3 33543 rs10828395 ARMC3 219681 10 23337258 NM_173081 NP_775104 A/G R626Q plus 24456071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 "by doubleHit,freq,cluster" 10p12.31 armadillo repeat containing 3 33544 rs10828833 GPR158 57512 10 25928186 NM_020752 NP_065803 A/G I1206V plus 24471570 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 10p12.31 G protein-coupled receptor 158 33545 rs10828833 GPR158 57512 10 25928186 NM_020752 NP_065803 A/G I1206V plus 24471570 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by doubleHit,freq,cluster" 10p12.31 G protein-coupled receptor 158 33546 rs10828833 GPR158 57512 10 25928186 NM_020752 NP_065803 A/G I1206V plus 24471570 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.19 123 "by doubleHit,freq,cluster" 10p12.31 G protein-coupled receptor 158 33547 rs10838093 OR51Q1 390061 11 5400463 XM_372355 XP_372355 C/T C153R plus 23556450 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.4 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 33548 rs10838093 OR51Q1 390061 11 5400463 XM_372355 XP_372355 C/T C153R plus 23556450 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.41 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 33549 rs10838093 OR51Q1 390061 11 5400463 XM_372355 XP_372355 C/T C153R plus 23556450 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.28 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1" 33550 rs10838852 OR4X1 390113 11 48242832 XM_372376 XP_372376 C/T P282S plus 24698153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 33551 rs10838852 OR4X1 390113 11 48242832 XM_372376 XP_372376 C/T P282S plus 24698153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 33552 rs10838852 OR4X1 390113 11 48242832 XM_372376 XP_372376 C/T P282S plus 24698153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 33553 rs10839531 OR52W1 120787 11 6177745 XM_062263 XP_062263 A/G H239R plus 23529870 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 33554 rs10839531 OR52W1 120787 11 6177745 XM_062263 XP_062263 A/G H239R plus 23529870 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.45 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 33555 rs10839531 OR52W1 120787 11 6177745 XM_062263 XP_062263 A/G H239R plus 23529870 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 52, subfamily W, member 1" 33556 rs10839616 OR2AG2 338755 11 6746604 XM_291980 XP_291980 C/G R54P plus 24060873 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 33557 rs10839616 OR2AG2 338755 11 6746604 XM_291980 XP_291980 C/G R54P plus 24060873 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 33558 rs10839616 OR2AG2 338755 11 6746604 XM_291980 XP_291980 C/G R54P plus 24060873 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily AG, member 2" 33559 rs10839635 OR10A4 283297 11 6855239 NM_207186 NP_997069 A/G R262Q plus 24061834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 33560 rs10839635 OR10A4 283297 11 6855239 NM_207186 NP_997069 A/G R262Q plus 24061834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 33561 rs10839635 OR10A4 283297 11 6855239 NM_207186 NP_997069 A/G R262Q plus 24061834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 33562 rs10839658 OR2D3 120775 11 6899052 XM_062285 XP_062285 A/C L82I plus 24518758 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33563 rs10839658 OR2D3 120775 11 6899052 XM_062285 XP_062285 A/C L82I plus 24518758 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33564 rs10839658 OR2D3 120775 11 6899052 XM_062285 XP_062285 A/C L82I plus 24518758 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33565 rs10839659 OR2D3 120775 11 6899302 XM_062285 XP_062285 C/G W165S plus 24518774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33566 rs10839659 OR2D3 120775 11 6899302 XM_062285 XP_062285 C/G W165S plus 24518774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33567 rs10839659 OR2D3 120775 11 6899302 XM_062285 XP_062285 C/G W165S plus 24518774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 2, subfamily D, member 3" 33568 rs10839708 NALP14 338323 11 7035614 NM_176822 NP_789792 A/G E808K plus 16104159 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.43 123 "HapMap,doubleHit,freq,cluster" 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 33569 rs10839708 NALP14 338323 11 7035614 NM_176822 NP_789792 A/G E808K plus 24520046 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 33570 rs10839708 NALP14 338323 11 7035614 NM_176822 NP_789792 A/G E808K plus 24520046 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "HapMap,doubleHit,freq,cluster" 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 33571 rs10839708 NALP14 338323 11 7035614 NM_176822 NP_789792 A/G E808K plus 24520046 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "HapMap,doubleHit,freq,cluster" 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 33572 rs10841795 SLCO1A2 6579 12 21378811 NM_021094 NP_066580 A/G I13T plus 16339734 1144 PHARMGKB_PMT PA129888520 552 0.06 120 "by cluster,freq" 12p12 "solute carrier organic anion transporter family, member 1A2" 33573 rs10841795 SLCO1A2 6579 12 21378811 NM_134431 NP_602307 A/G I13T plus 16339734 1144 PHARMGKB_PMT PA129888520 552 0.06 120 "by cluster,freq" 12p12 "solute carrier organic anion transporter family, member 1A2" 33574 rs10842971 PZP 5858 12 9194563 NM_002864 NP_002855 A/T I1443N plus 24699068 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq" 12p13-p12.2 pregnancy-zone protein 33575 rs10842971 PZP 5858 12 9194563 NM_002864 NP_002855 A/T I1443N plus 24699068 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq" 12p13-p12.2 pregnancy-zone protein 33576 rs10842971 PZP 5858 12 9194563 NM_002864 NP_002855 A/T I1443N plus 24699068 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 12p13-p12.2 pregnancy-zone protein 33577 rs10849133 GALNT8 26290 12 4700261 NM_017417 NP_059113 G/T Y53D plus 23779747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 33578 rs10849133 GALNT8 26290 12 4700261 NM_017417 NP_059113 G/T Y53D plus 23779747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 33579 rs10849133 GALNT8 26290 12 4700261 NM_017417 NP_059113 G/T Y53D plus 23779747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by doubleHit,freq,cluster" 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 33580 rs10849482 CNAP1 9918 12 6505535 NM_014865 NP_055680 A/G V797M plus 24697442 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 33581 rs10849482 CNAP1 9918 12 6505535 NM_014865 NP_055680 A/G V797M plus 24697442 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 33582 rs10849482 CNAP1 9918 12 6505535 NM_014865 NP_055680 A/G V797M plus 24697442 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 12p13.3 chromosome condensation-related SMC-associated protein 1 33583 rs10852891 MPDU1 9526 17 7431534 NM_004870 NP_004861 A/G A229T plus 24584046 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 33584 rs10852891 MPDU1 9526 17 7431534 NM_004870 NP_004861 A/G A229T plus 24584046 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 33585 rs10852891 MPDU1 9526 17 7431534 NM_004870 NP_004861 A/G A229T plus 24584046 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 33586 rs10853751 EXOSC5 56915 19 46595060 NM_020158 NP_064543 C/T T5M minus 24570354 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by cluster,freq" 19q13.1 exosome component 5 33587 rs10853751 EXOSC5 56915 19 46595060 NM_020158 NP_064543 C/T T5M minus 24570354 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 19q13.1 exosome component 5 33588 rs10853751 EXOSC5 56915 19 46595060 NM_020158 NP_064543 C/T T5M minus 24570354 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 19q13.1 exosome component 5 33589 rs10853751 EXOSC5 56915 19 46595060 NM_020158 NP_064543 C/T T5M minus 28459296 549 KYUGEN CP CEPH (78) 156 0.49 123 "by cluster,freq" 19q13.1 exosome component 5 33590 rs10853751 EXOSC5 56915 19 46595060 NM_020158 NP_064543 C/T T5M minus 28459296 1335 KYUGEN JPK2 Japanese (100) 200 0.48 123 "by cluster,freq" 19q13.1 exosome component 5 33591 rs10864219 USH2A 7399 1 212560775 NM_206933 NP_996816 A/G I2169T plus 24273742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 "by doubleHit,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 33592 rs10864219 USH2A 7399 1 212560775 NM_206933 NP_996816 A/G I2169T plus 24273742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 33593 rs10864219 USH2A 7399 1 212560775 NM_206933 NP_996816 A/G I2169T plus 24273742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq" 1q41 "Usher syndrome 2A (autosomal recessive, mild)" 33594 rs10868138 SLC28A3 64078 9 84146855 NM_022127 NP_071410 C/T Y113C plus 16339516 1137 PHARMGKB_PMT PA129447440 552 0.11 123 "by cluster,freq" 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 33595 rs10868138 SLC28A3 64078 9 84146855 NM_022127 NP_071410 C/T Y113C plus 23568212 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 33596 rs10868138 SLC28A3 64078 9 84146855 NM_022127 NP_071410 C/T Y113C plus 23568212 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 33597 rs10868138 SLC28A3 64078 9 84146855 NM_022127 NP_071410 C/T Y113C plus 23568212 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 33598 rs10875553 TIGD6 81789 5 149355125 NM_030953 NP_112215 C/T Q327R plus 15842996 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 123 "HapMap,doubleHit,freq,cluster" 5q33.1 tigger transposable element derived 6 33599 rs10875553 TIGD6 81789 5 149355125 NM_030953 NP_112215 C/T Q327R plus 23764895 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "HapMap,doubleHit,freq,cluster" 5q33.1 tigger transposable element derived 6 33600 rs10875553 TIGD6 81789 5 149355125 NM_030953 NP_112215 C/T Q327R plus 23764895 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "HapMap,doubleHit,freq,cluster" 5q33.1 tigger transposable element derived 6 33601 rs10875553 TIGD6 81789 5 149355125 NM_030953 NP_112215 C/T Q327R plus 23764895 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "HapMap,doubleHit,freq,cluster" 5q33.1 tigger transposable element derived 6 33602 rs10876360 K5B 196374 12 51526292 NM_173352 NP_775487 C/T A238T plus 18512616 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,doubleHit,freq" 12q13.13 keratin 5b 33603 rs10882993 ZFYVE27 118813 10 99494620 NM_144588 NP_653189 G/T G70V plus 24091314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q24.2 "zinc finger, FYVE domain containing 27" 33604 rs10882993 ZFYVE27 118813 10 99494620 NM_144588 NP_653189 G/T G70V plus 24091314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 10q24.2 "zinc finger, FYVE domain containing 27" 33605 rs10882993 ZFYVE27 118813 10 99494620 NM_144588 NP_653189 G/T G70V plus 24091314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq,cluster" 10q24.2 "zinc finger, FYVE domain containing 27" 33606 rs10883100 HPSE2 60495 10 100209364 NM_021828 NP_068600 A/T Y579F plus 24094193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q23-q24 heparanase 2 33607 rs10883100 HPSE2 60495 10 100209364 NM_021828 NP_068600 A/T Y579F plus 24094193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 10q23-q24 heparanase 2 33608 rs10883100 HPSE2 60495 10 100209364 NM_021828 NP_068600 A/T Y579F plus 24094193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 10q23-q24 heparanase 2 33609 rs10883841 NT5C2 22978 10 104924699 NM_012229 NP_036361 C/T T3A plus 18907816 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.12 123 "HapMap,doubleHit,freq,cluster" 10q24.33 "5'-nucleotidase, cytosolic II" 33610 rs10883841 NT5C2 22978 10 104924699 NM_012229 NP_036361 C/T T3A plus 24498667 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 10q24.33 "5'-nucleotidase, cytosolic II" 33611 rs10883841 NT5C2 22978 10 104924699 NM_012229 NP_036361 C/T T3A plus 24498667 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "HapMap,doubleHit,freq,cluster" 10q24.33 "5'-nucleotidase, cytosolic II" 33612 rs10883841 NT5C2 22978 10 104924699 NM_012229 NP_036361 C/T T3A plus 24498667 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "HapMap,doubleHit,freq,cluster" 10q24.33 "5'-nucleotidase, cytosolic II" 33613 rs10887063 TACC2 10579 10 123834493 NM_206862 NP_996744 C/T L830F plus 23608548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33614 rs10887063 TACC2 10579 10 123834493 NM_206862 NP_996744 C/T L830F plus 23608548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33615 rs10887063 TACC2 10579 10 123834493 NM_206862 NP_996744 C/T L830F plus 23608548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33616 rs10888390 CTSS 1520 1 147540612 NM_004079 NP_004070 A/G R113W plus 24276633 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 "by doubleHit,freq,cluster" 1q21 cathepsin S 33617 rs10888390 CTSS 1520 1 147540612 NM_004079 NP_004070 A/G R113W plus 24276633 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.38 123 "by doubleHit,freq,cluster" 1q21 cathepsin S 33618 rs10888390 CTSS 1520 1 147540612 NM_004079 NP_004070 A/G R113W plus 24276633 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 1q21 cathepsin S 33619 rs10889205 RLF 6018 1 40374819 NM_012421 NP_036553 A/T E1784D plus 16394890 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,doubleHit,freq,cluster" 1p32 rearranged L-myc fusion sequence 33620 rs10890850 SLAC2-B 23086 11 107888770 NM_015065 NP_055880 A/T N892Y plus 23619579 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33621 rs10890850 SLAC2-B 23086 11 107888770 NM_015065 NP_055880 A/T N892Y plus 23619579 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33622 rs10890850 SLAC2-B 23086 11 107888770 NM_015065 NP_055880 A/T N892Y plus 23619579 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 11q23.1 SLAC2-B 33623 rs10896380 IGHMBP2 3508 11 68438978 NM_002180 NP_002171 A/G I275V plus 15913512 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.27 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 33624 rs10896380 IGHMBP2 3508 11 68438978 NM_002180 NP_002171 A/G I275V plus 24567514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 33625 rs10896380 IGHMBP2 3508 11 68438978 NM_002180 NP_002171 A/G I275V plus 24567514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 33626 rs10896380 IGHMBP2 3508 11 68438978 NM_002180 NP_002171 A/G I275V plus 24567514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,doubleHit,freq,cluster" 11q13.2-q13.4 immunoglobulin mu binding protein 2 33627 rs10920551 PPFIA4 8497 1 199736024 XM_046751 XP_046751 C/T A62V plus 23850942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 1q32.1 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4" 33628 rs10920551 PPFIA4 8497 1 199736024 XM_046751 XP_046751 C/T A62V plus 23850942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 "by doubleHit,freq,cluster" 1q32.1 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4" 33629 rs10920551 PPFIA4 8497 1 199736024 XM_046751 XP_046751 C/T A62V plus 23850942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q32.1 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4" 33630 rs10923472 PF6 200162 1 118277995 NM_206996 NP_996879 A/G P1348L plus 24617121 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 1p12 projection protein PF6 33631 rs10923472 PF6 200162 1 118277995 NM_206996 NP_996879 A/G P1348L plus 24617121 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 1p12 projection protein PF6 33632 rs10923472 PF6 200162 1 118277995 NM_206996 NP_996879 A/G P1348L plus 24617121 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1p12 projection protein PF6 33633 rs10927851 FBLP-1 54751 1 15842240 NM_017556 NP_060026 C/T S191F plus 23160459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.24 123 "by doubleHit,freq,cluster" 1p36.13 filamin-binding LIM protein-1 33634 rs10927851 FBLP-1 54751 1 15842240 NM_017556 NP_060026 C/T S191F plus 23160459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 18 0.5 123 "by doubleHit,freq,cluster" 1p36.13 filamin-binding LIM protein-1 33635 rs10927851 FBLP-1 54751 1 15842240 NM_017556 NP_060026 C/T S191F plus 23160459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by doubleHit,freq,cluster" 1p36.13 filamin-binding LIM protein-1 33636 rs10930046 IFIH1 64135 2 162963490 NM_022168 NP_071451 C/T H460R plus 23232900 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 33637 rs10930046 IFIH1 64135 2 162963490 NM_022168 NP_071451 C/T H460R plus 23232900 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.39 123 "by doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 33638 rs10930046 IFIH1 64135 2 162963490 NM_022168 NP_071451 C/T H460R plus 23232900 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by doubleHit,freq,cluster" 2p24.3-q24.3 melanoma differentiation associated protein-5 33639 rs10931715 DNAH7 56171 2 196677417 NM_018897 NP_061720 A/G R545C plus 23914092 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 33640 rs10931715 DNAH7 56171 2 196677417 NM_018897 NP_061720 A/G R545C plus 23914092 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 33641 rs10931715 DNAH7 56171 2 196677417 NM_018897 NP_061720 A/G R545C plus 23914092 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 33642 rs10935070 TOPBP1 11073 3 134824686 NM_007027 NP_008958 A/G N955S minus 24334172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 3q22.1 topoisomerase (DNA) II binding protein 33643 rs10935070 TOPBP1 11073 3 134824686 NM_007027 NP_008958 A/G N955S minus 24334172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3q22.1 topoisomerase (DNA) II binding protein 33644 rs10935070 TOPBP1 11073 3 134824686 NM_007027 NP_008958 A/G N955S minus 24334172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q22.1 topoisomerase (DNA) II binding protein 33645 rs10941412 OSMR 9180 5 38954915 NM_003999 NP_003990 A/G E527K plus 23431084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 5p13.2 oncostatin M receptor 33646 rs10941412 OSMR 9180 5 38954915 NM_003999 NP_003990 A/G E527K plus 23431084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 5p13.2 oncostatin M receptor 33647 rs10941412 OSMR 9180 5 38954915 NM_003999 NP_003990 A/G E527K plus 23431084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5p13.2 oncostatin M receptor 33648 rs10943299 IMPG1 3617 6 76697523 NM_001563 NP_001554 A/G R704W plus 23388243 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 33649 rs10943299 IMPG1 3617 6 76697523 NM_001563 NP_001554 A/G R704W plus 23388243 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 33650 rs10943299 IMPG1 3617 6 76697523 NM_001563 NP_001554 A/G R704W plus 23388243 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q14.2-q15 interphotoreceptor matrix proteoglycan 1 33651 rs10946829 BTN2A3 54718 6 26534466 NM_024018 NP_076923 A/G V148I plus 24367609 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 6p22.1 "butyrophilin, subfamily 2, member A3" 33652 rs10946829 BTN2A3 54718 6 26534466 NM_024018 NP_076923 A/G V148I plus 24367609 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 6p22.1 "butyrophilin, subfamily 2, member A3" 33653 rs10946829 BTN2A3 54718 6 26534466 NM_024018 NP_076923 A/G V148I plus 24367609 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 6p22.1 "butyrophilin, subfamily 2, member A3" 33654 rs10948072 ZNF318 24149 6 43415839 NM_014345 NP_055160 A/G T1112I plus 23675564 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 6pter-p12.1 zinc finger protein 318 33655 rs10948072 ZNF318 24149 6 43415839 NM_014345 NP_055160 A/G T1112I plus 23675564 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6pter-p12.1 zinc finger protein 318 33656 rs10948072 ZNF318 24149 6 43415839 NM_014345 NP_055160 A/G T1112I plus 23675564 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6pter-p12.1 zinc finger protein 318 33657 rs10948132 SPATS1 221409 6 44418832 NM_145026 NP_659463 A/G G8R plus 24145569 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6p21.1 "spermatogenesis associated, serine-rich 1" 33658 rs10948132 SPATS1 221409 6 44418832 NM_145026 NP_659463 A/G G8R plus 24145569 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 6p21.1 "spermatogenesis associated, serine-rich 1" 33659 rs10948132 SPATS1 221409 6 44418832 NM_145026 NP_659463 A/G G8R plus 24145569 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 6p21.1 "spermatogenesis associated, serine-rich 1" 33660 rs10954696 PCLO 27445 7 82227497 XM_168530 XP_168530 C/T V1291I plus 24056953 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33661 rs10954696 PCLO 27445 7 82227497 XM_168530 XP_168530 C/T V1291I plus 24056953 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33662 rs10954696 PCLO 27445 7 82227497 XM_168530 XP_168530 C/T V1291I plus 24056953 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.48 123 "by doubleHit,freq,cluster" 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 33663 rs10957393 CPA6 57094 8 68699024 NM_020361 NP_065094 A/G F45L plus 23569677 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 8q13.1 carboxypeptidase A6 33664 rs10957393 CPA6 57094 8 68699024 NM_020361 NP_065094 A/G F45L plus 23569677 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 8q13.1 carboxypeptidase A6 33665 rs10957393 CPA6 57094 8 68699024 NM_020361 NP_065094 A/G F45L plus 23569677 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq,cluster" 8q13.1 carboxypeptidase A6 33666 rs10977171 PTPRD 5789 9 8508052 NM_002839 NP_002830 C/G Q447E plus 24107517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33667 rs10977171 PTPRD 5789 9 8508052 NM_002839 NP_002830 C/G Q447E plus 24107517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33668 rs10977171 PTPRD 5789 9 8508052 NM_002839 NP_002830 C/G Q447E plus 24107517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33669 rs10977171 PTPRD 5789 9 8508052 NM_130391 NP_569075 C/G Q434E plus 24107517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33670 rs10977171 PTPRD 5789 9 8508052 NM_130391 NP_569075 C/G Q434E plus 24107517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33671 rs10977171 PTPRD 5789 9 8508052 NM_130391 NP_569075 C/G Q434E plus 24107517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33672 rs10977171 PTPRD 5789 9 8508052 NM_130392 NP_569076 C/G Q447E plus 24107517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33673 rs10977171 PTPRD 5789 9 8508052 NM_130392 NP_569076 C/G Q447E plus 24107517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33674 rs10977171 PTPRD 5789 9 8508052 NM_130392 NP_569076 C/G Q447E plus 24107517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33675 rs10977171 PTPRD 5789 9 8508052 NM_130393 NP_569077 C/G Q447E plus 24107517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33676 rs10977171 PTPRD 5789 9 8508052 NM_130393 NP_569077 C/G Q447E plus 24107517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33677 rs10977171 PTPRD 5789 9 8508052 NM_130393 NP_569077 C/G Q447E plus 24107517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 9p23-p24.3 "protein tyrosine phosphatase, receptor type, D" 33678 rs10979601 IKBKAP 8518 9 108740406 NM_003640 NP_003631 C/T G765E plus 23784459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33679 rs10979601 IKBKAP 8518 9 108740406 NM_003640 NP_003631 C/T G765E plus 23784459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33680 rs10979601 IKBKAP 8518 9 108740406 NM_003640 NP_003631 C/T G765E plus 23784459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq" 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 33681 rs10982134 COL27A1 85301 9 114130552 NM_032888 NP_116277 A/G R1354Q plus 24055292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 9q33.1 "collagen, type XXVII, alpha 1" 33682 rs10982134 COL27A1 85301 9 114130552 NM_032888 NP_116277 A/G R1354Q plus 24055292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 9q33.1 "collagen, type XXVII, alpha 1" 33683 rs10982134 COL27A1 85301 9 114130552 NM_032888 NP_116277 A/G R1354Q plus 24055292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 9q33.1 "collagen, type XXVII, alpha 1" 33684 rs10985704 OR1L8 138881 9 122410232 XM_071150 XP_071150 G/T T27P plus 24519558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33685 rs10985704 OR1L8 138881 9 122410232 XM_071150 XP_071150 G/T T27P plus 24519558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33686 rs10985704 OR1L8 138881 9 122410232 XM_071150 XP_071150 G/T T27P plus 24519558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq" 9q34.11 "olfactory receptor, family 1, subfamily L, member 8" 33687 rs10997975 MYPN 84665 10 69603927 NM_032578 NP_115967 A/G S691N plus 24557025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 10q22.1 myopalladin 33688 rs10997975 MYPN 84665 10 69603927 NM_032578 NP_115967 A/G S691N plus 24557025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq" 10q22.1 myopalladin 33689 rs10997975 MYPN 84665 10 69603927 NM_032578 NP_115967 A/G S691N plus 24557025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq" 10q22.1 myopalladin 33690 rs11004439 PCDH15 65217 10 56093974 NM_033056 NP_149045 A/C S19A plus 24563608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 10p11.2-q21 protocadherin 15 33691 rs11004439 PCDH15 65217 10 56093974 NM_033056 NP_149045 A/C S19A plus 24563608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 10p11.2-q21 protocadherin 15 33692 rs11004439 PCDH15 65217 10 56093974 NM_033056 NP_149045 A/C S19A plus 24563608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 10p11.2-q21 protocadherin 15 33693 rs11006128 TFAM 7019 10 59815348 NM_003201 NP_003192 C/G S12T plus 24116170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 10q21 "transcription factor A, mitochondrial" 33694 rs11006128 TFAM 7019 10 59815348 NM_003201 NP_003192 C/G S12T plus 24116170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q21 "transcription factor A, mitochondrial" 33695 rs11006128 TFAM 7019 10 59815348 NM_003201 NP_003192 C/G S12T plus 24116170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 10q21 "transcription factor A, mitochondrial" 33696 rs11007612 SVIL 6840 10 29810557 NM_003174 NP_003165 A/G S1262P plus 24692485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 10p11.2 supervillin 33697 rs11007612 SVIL 6840 10 29810557 NM_003174 NP_003165 A/G S1262P plus 24692485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10p11.2 supervillin 33698 rs11007612 SVIL 6840 10 29810557 NM_003174 NP_003165 A/G S1262P plus 24692485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10p11.2 supervillin 33699 rs11007612 SVIL 6840 10 29810557 NM_021738 NP_068506 A/G S1688P plus 24692485 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 10p11.2 supervillin 33700 rs11007612 SVIL 6840 10 29810557 NM_021738 NP_068506 A/G S1688P plus 24692485 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10p11.2 supervillin 33701 rs11007612 SVIL 6840 10 29810557 NM_021738 NP_068506 A/G S1688P plus 24692485 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10p11.2 supervillin 33702 rs11020968 AMOTL1 154810 11 94242062 NM_130847 NP_570899 C/T P847L plus 16098390 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 120 "HapMap,freq" 11q14.3 angiomotin like 1 33703 rs11022079 USP47 55031 11 11870161 NM_017944 NP_060414 G/T G75V plus 16514526 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.34 120 "HapMap,doubleHit,freq,cluster" 11p15.3 ubiquitin specific protease 47 33704 rs11023804 SOX6 55553 11 15951175 NM_033326 NP_201583 A/G T728I plus 16106194 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p15.3 SRY (sex determining region Y)-box 6 33705 rs11024333 OTOG 340990 11 17571779 XM_291816 XP_291816 A/G R90Q plus 24124997 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 11p15.1 otogelin 33706 rs11024333 OTOG 340990 11 17571779 XM_291816 XP_291816 A/G R90Q plus 24124997 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11p15.1 otogelin 33707 rs11024333 OTOG 340990 11 17571779 XM_291816 XP_291816 A/G R90Q plus 24124997 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 11p15.1 otogelin 33708 rs11034596 OR51A7 119687 11 4885197 XM_061619 XP_061619 A/G E8K plus 24069421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 33709 rs11034596 OR51A7 119687 11 4885197 XM_061619 XP_061619 A/G E8K plus 24069421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 33710 rs11034596 OR51A7 119687 11 4885197 XM_061619 XP_061619 A/G E8K plus 24069421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily A, member 7" 33711 rs11035396 OR52E2 119678 11 5036935 XM_061610 XP_061610 A/G R167W plus 24529466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 33712 rs11035396 OR52E2 119678 11 5036935 XM_061610 XP_061610 A/G R167W plus 24529466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 33713 rs11035396 OR52E2 119678 11 5036935 XM_061610 XP_061610 A/G R167W plus 24529466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 33714 rs11037445 OR51I1 390063 11 5418831 XM_372356 XP_372356 C/G V164L plus 24073510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 33715 rs11037445 OR51I1 390063 11 5418831 XM_372356 XP_372356 C/G V164L plus 24073510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 33716 rs11037445 OR51I1 390063 11 5418831 XM_372356 XP_372356 C/G V164L plus 24073510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 33717 rs11037502 OR51I2 390064 11 5432082 XM_372357 XP_372357 A/G R263H plus 24073711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 33718 rs11037502 OR51I2 390064 11 5432082 XM_372357 XP_372357 A/G R263H plus 24073711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 33719 rs11037502 OR51I2 390064 11 5432082 XM_372357 XP_372357 A/G R263H plus 24073711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 33720 rs11038628 TRIM5 85363 11 5645516 NM_033034 NP_149023 C/T G249D plus 24076029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33721 rs11038628 TRIM5 85363 11 5645516 NM_033034 NP_149023 C/T G249D plus 24076029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33722 rs11038628 TRIM5 85363 11 5645516 NM_033034 NP_149023 C/T G249D plus 24076029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33723 rs11038628 TRIM5 85363 11 5645516 NM_033092 NP_149083 C/T G249D plus 24076029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33724 rs11038628 TRIM5 85363 11 5645516 NM_033092 NP_149083 C/T G249D plus 24076029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33725 rs11038628 TRIM5 85363 11 5645516 NM_033092 NP_149083 C/T G249D plus 24076029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33726 rs11038628 TRIM5 85363 11 5645516 NM_033093 NP_149084 C/T G249D plus 24076029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33727 rs11038628 TRIM5 85363 11 5645516 NM_033093 NP_149084 C/T G249D plus 24076029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33728 rs11038628 TRIM5 85363 11 5645516 NM_033093 NP_149084 C/T G249D plus 24076029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 "by cluster,freq" 11p15 tripartite motif-containing 5 33729 rs11039302 KBTBD4 55709 11 47551627 NM_016506 NP_057590 C/T D330N plus 16025810 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 11p11.2 kelch repeat and BTB (POZ) domain containing 4 33730 rs11039302 KBTBD4 55709 11 47551627 NM_018095 NP_060565 C/T D330N plus 16025810 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 11p11.2 kelch repeat and BTB (POZ) domain containing 4 33731 rs11041108 ZNF215 7762 11 6910434 NM_013250 NP_037382 A/G M119V plus 24062249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 215 33732 rs11041108 ZNF215 7762 11 6910434 NM_013250 NP_037382 A/G M119V plus 24062249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 215 33733 rs11041108 ZNF215 7762 11 6910434 NM_013250 NP_037382 A/G M119V plus 24062249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 11p15.4 zinc finger protein 215 33734 rs11042352 IPO7 10527 11 9416018 NM_006391 NP_006382 C/T L804F plus 18490507 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p15.3 importin 7 33735 rs11045819 SLCO1B1 10599 12 21221080 NM_006446 NP_006437 A/C P155T plus 24436893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 12p "solute carrier organic anion transporter family, member 1B1" 33736 rs11045819 SLCO1B1 10599 12 21221080 NM_006446 NP_006437 A/C P155T plus 24436893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12p "solute carrier organic anion transporter family, member 1B1" 33737 rs11045819 SLCO1B1 10599 12 21221080 NM_006446 NP_006437 A/C P155T plus 24436893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p "solute carrier organic anion transporter family, member 1B1" 33738 rs11063529 B4GalNac-T3 283358 12 527665 NM_173593 NP_775864 A/G R265Q plus 24610932 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 12p13.33 "beta 1,4-N-acetylgalactosaminyltransferase-transferase-III" 33739 rs11063529 B4GalNac-T3 283358 12 527665 NM_173593 NP_775864 A/G R265Q plus 24610932 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 12p13.33 "beta 1,4-N-acetylgalactosaminyltransferase-transferase-III" 33740 rs11063529 B4GalNac-T3 283358 12 527665 NM_173593 NP_775864 A/G R265Q plus 24610932 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 12p13.33 "beta 1,4-N-acetylgalactosaminyltransferase-transferase-III" 33741 rs11070136 DZIP1 22873 13 95037806 NM_014934 NP_055749 A/G P717S plus 17505990 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,freq,cluster" 13q32.1 DAZ interacting protein 1 33742 rs11070136 DZIP1 22873 13 95037806 NM_198968 NP_945319 A/G P736S plus 17505990 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.35 121 "HapMap,doubleHit,freq,cluster" 13q32.1 DAZ interacting protein 1 33743 rs11071990 CALML4 91860 15 66284651 NM_033429 NP_219501 A/G R40X plus 15405365 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.01 120 HapMap 15q22.31 serologically defined breast cancer antigen NY-BR-20 33744 rs11073922 NEUGRIN 51335 15 88615668 NM_016645 NP_057729 C/T L102F plus 19320749 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 123 "HapMap,doubleHit,freq,cluster" 15q26.1 mesenchymal stem cell protein DSC92 33745 rs11073922 NEUGRIN 51335 15 88615668 NM_016645 NP_057729 C/T L102F plus 24792826 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 "HapMap,doubleHit,freq,cluster" 15q26.1 mesenchymal stem cell protein DSC92 33746 rs11073964 VPS33B 26276 15 89344765 NM_018668 NP_061138 C/T G514S plus 24664476 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q26.1 vacuolar protein sorting 33B (yeast) 33747 rs11073964 VPS33B 26276 15 89344765 NM_018668 NP_061138 C/T G514S plus 24664476 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 15q26.1 vacuolar protein sorting 33B (yeast) 33748 rs11073964 VPS33B 26276 15 89344765 NM_018668 NP_061138 C/T G514S plus 24664476 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by doubleHit,freq,cluster" 15q26.1 vacuolar protein sorting 33B (yeast) 33749 rs11074359 COQ7 10229 16 18992799 NM_016138 NP_057222 C/T T103M plus 16705525 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 121 "HapMap,doubleHit,freq,cluster" 16p13.11-p12.3 "coenzyme Q7 homolog, ubiquinone (yeast)" 33750 rs11074656 SLC5A11 115584 16 24796147 NM_052944 NP_443176 C/T V182A plus 24405443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 16pter-p11 "solute carrier family 5 (sodium/glucose cotransporter), member 11" 33751 rs11074656 SLC5A11 115584 16 24796147 NM_052944 NP_443176 C/T V182A plus 24405443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 16pter-p11 "solute carrier family 5 (sodium/glucose cotransporter), member 11" 33752 rs11074656 SLC5A11 115584 16 24796147 NM_052944 NP_443176 C/T V182A plus 24405443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 16pter-p11 "solute carrier family 5 (sodium/glucose cotransporter), member 11" 33753 rs11076256 GOT2 2806 16 57309967 NM_002080 NP_002071 A/G G188S minus 24788039 1303 SEQUENOM CEPH CEPH (92) 184 0.05 123 "by doubleHit,cluster" 16q21 "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)" 33754 rs11079339 EPX 8288 17 53625441 NM_000502 NP_000493 A/G I40M plus 23791672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 17q23.1 eosinophil peroxidase 33755 rs11079339 EPX 8288 17 53625441 NM_000502 NP_000493 A/G I40M plus 23791672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q23.1 eosinophil peroxidase 33756 rs11079339 EPX 8288 17 53625441 NM_000502 NP_000493 A/G I40M plus 23791672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 17q23.1 eosinophil peroxidase 33757 rs11080149 OMG 4974 17 26647414 NM_002544 NP_002535 A/G G21D minus 16745079 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 123 "HapMap,freq,cluster" 17q11.2 oligodendrocyte myelin glycoprotein 33758 rs11080149 OMG 4974 17 26647414 NM_002544 NP_002535 A/G G21D minus 24706008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq,cluster" 17q11.2 oligodendrocyte myelin glycoprotein 33759 rs11080149 OMG 4974 17 26647414 NM_002544 NP_002535 A/G G21D minus 24706008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "HapMap,freq,cluster" 17q11.2 oligodendrocyte myelin glycoprotein 33760 rs11080149 OMG 4974 17 26647414 NM_002544 NP_002535 A/G G21D minus 24706008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 17q11.2 oligodendrocyte myelin glycoprotein 33761 rs11082414 SETBP1 26040 18 40783994 NM_015559 NP_056374 C/G V177L plus 24497916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 18q21.1 SET binding protein 1 33762 rs11082414 SETBP1 26040 18 40783994 NM_015559 NP_056374 C/G V177L plus 24497916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q21.1 SET binding protein 1 33763 rs11082414 SETBP1 26040 18 40783994 NM_015559 NP_056374 C/G V177L plus 24497916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 18q21.1 SET binding protein 1 33764 rs11084162 ZNF534 147658 19 57630229 XM_496320 XP_496320 A/G I89V plus 24204256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 19q13.41 zinc finger protein 534 33765 rs11084162 ZNF534 147658 19 57630229 XM_496320 XP_496320 A/G I89V plus 24204256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 19q13.41 zinc finger protein 534 33766 rs11084162 ZNF534 147658 19 57630229 XM_496320 XP_496320 A/G I89V plus 24204256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 19q13.41 zinc finger protein 534 33767 rs11086998 TNFRSF5 958 20 44190931 NM_001250 NP_001241 C/G P227A plus 16340762 693 EGP_SNPS PDR90 NIHPDR 158 0.03 120 "by cluster,freq" 20q12-q13.2 "tumor necrosis factor receptor superfamily, member 5" 33768 rs11088674 PRSS7 5651 21 18609388 NM_002772 NP_002763 G/T N660H plus 23778157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 33769 rs11088674 PRSS7 5651 21 18609388 NM_002772 NP_002763 G/T N660H plus 23778157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 33770 rs11088674 PRSS7 5651 21 18609388 NM_002772 NP_002763 G/T N660H plus 23778157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 21q21.1 "protease, serine, 7 (enterokinase)" 33771 rs11089979 VPREB1 7441 22 20924230 NM_007128 NP_009059 C/T S122L plus 16359759 649 FHCRC POPU1 USA (20) 40 0.03 120 by freq 22q11.22 pre-B lymphocyte gene 1 33772 rs11089979 VPREB1 7441 22 20924230 NM_007128 NP_009059 C/T S122L plus 16359762 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 22q11.22 pre-B lymphocyte gene 1 33773 rs11090143 BIK 638 22 41844603 NM_001197 NP_001188 C/T T26I plus 16359900 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 HapMap 22q13.31 BCL2-interacting killer (apoptosis-inducing) 33774 rs11090143 BIK 638 22 41844603 NM_001197 NP_001188 C/T T26I plus 16359901 649 FHCRC POPU1 USA (20) 40 0.03 120 HapMap 22q13.31 BCL2-interacting killer (apoptosis-inducing) 33775 rs11090865 TRMT1 55687 22 45052208 NM_018006 NP_060476 G/T A10S plus 23613711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 22q13 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 33776 rs11090865 TRMT1 55687 22 45052208 NM_018006 NP_060476 G/T A10S plus 23613711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by doubleHit,freq,cluster" 22q13 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 33777 rs11090865 TRMT1 55687 22 45052208 NM_018006 NP_060476 G/T A10S plus 23613711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 22q13 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 33778 rs11096955 TLR10 81793 4 38598673 NM_030956 NP_112218 A/C I369L minus 15357143 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.46 120 "by cluster,freq" 4p14 toll-like receptor 10 33779 rs11096955 TLR10 81793 4 38598673 NM_030956 NP_112218 A/C I369L minus 15357143 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.28 120 "by cluster,freq" 4p14 toll-like receptor 10 33780 rs11096955 TLR10 81793 4 38598673 NM_030956 NP_112218 A/C I369L minus 15357143 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by cluster,freq" 4p14 toll-like receptor 10 33781 rs11096957 TLR10 81793 4 38599057 NM_030956 NP_112218 A/C N241H minus 15357137 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.46 120 "by cluster,freq" 4p14 toll-like receptor 10 33782 rs11096957 TLR10 81793 4 38599057 NM_030956 NP_112218 A/C N241H minus 15357137 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.28 120 "by cluster,freq" 4p14 toll-like receptor 10 33783 rs11096957 TLR10 81793 4 38599057 NM_030956 NP_112218 A/C N241H minus 15357137 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by cluster,freq" 4p14 toll-like receptor 10 33784 rs11099592 HPSE 10855 4 84587798 NM_006665 NP_006656 C/T K307R plus 17030608 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.22 121 "HapMap,doubleHit,freq,cluster" 4q21.3 heparanase 33785 rs11102001 EPS8L3 79574 1 110011733 NM_024526 NP_078802 A/G P356S plus 23203521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33786 rs11102001 EPS8L3 79574 1 110011733 NM_024526 NP_078802 A/G P356S plus 23203521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33787 rs11102001 EPS8L3 79574 1 110011733 NM_024526 NP_078802 A/G P356S plus 23203521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33788 rs11102001 EPS8L3 79574 1 110011733 NM_133181 NP_573444 A/G P356S plus 23203521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33789 rs11102001 EPS8L3 79574 1 110011733 NM_133181 NP_573444 A/G P356S plus 23203521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33790 rs11102001 EPS8L3 79574 1 110011733 NM_133181 NP_573444 A/G P356S plus 23203521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33791 rs11102001 EPS8L3 79574 1 110011733 NM_139053 NP_620641 A/G P357S plus 23203521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33792 rs11102001 EPS8L3 79574 1 110011733 NM_139053 NP_620641 A/G P357S plus 23203521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33793 rs11102001 EPS8L3 79574 1 110011733 NM_139053 NP_620641 A/G P357S plus 23203521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 1p13.2 EPS8-like 3 33794 rs11130097 TDGF1 6997 3 46595618 NM_003212 NP_003203 C/T V22A plus 16986518 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.42 121 "HapMap,doubleHit,freq,cluster" 3p21.31 teratocarcinoma-derived growth factor 1 33795 rs11134804 ADAM19 8728 5 156897522 NM_033274 NP_150377 C/G Q103E minus 15355034 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 44 0.11 120 "by cluster,freq" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33796 rs11134804 ADAM19 8728 5 156897522 NM_033274 NP_150377 C/G Q103E minus 15355034 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 1 120 "by cluster,freq" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33797 rs11134804 ADAM19 8728 5 156897522 NM_033274 NP_150377 C/G Q103E minus 15355034 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 "by cluster,freq" 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33798 rs11150843 GAA 2548 17 75694264 NM_000152 NP_000143 A/G R223H plus 24796551 1303 SEQUENOM CEPH CEPH (92) 184 0.2 123 "by doubleHit,freq,cluster" 17q25.2-q25.3 "glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II)" 33799 rs11154964 PBOV1 59351 6 138581020 NM_021635 NP_067648 A/G I69T plus 23481920 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 33800 rs11154964 PBOV1 59351 6 138581020 NM_021635 NP_067648 A/G I69T plus 23481920 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 33801 rs11154964 PBOV1 59351 6 138581020 NM_021635 NP_067648 A/G I69T plus 23481920 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 6q23-q24 prostate and breast cancer overexpressed 1 33802 rs11155242 GPR126 57211 6 142733242 NM_020455 NP_065188 A/C K230Q plus 24429937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 6q24.1 G protein-coupled receptor 126 33803 rs11155242 GPR126 57211 6 142733242 NM_020455 NP_065188 A/C K230Q plus 24429937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by doubleHit,freq,cluster" 6q24.1 G protein-coupled receptor 126 33804 rs11155242 GPR126 57211 6 142733242 NM_020455 NP_065188 A/C K230Q plus 24429937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 6q24.1 G protein-coupled receptor 126 33805 rs11155297 FUCA2 2519 6 143866797 NM_032020 NP_114409 G/T A233E plus 24431605 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 6q24 "fucosidase, alpha-L- 2, plasma" 33806 rs11155297 FUCA2 2519 6 143866797 NM_032020 NP_114409 G/T A233E plus 24431605 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6q24 "fucosidase, alpha-L- 2, plasma" 33807 rs11155297 FUCA2 2519 6 143866797 NM_032020 NP_114409 G/T A233E plus 24431605 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6q24 "fucosidase, alpha-L- 2, plasma" 33808 rs11167600 PCDHA2 56146 5 140155049 NM_018905 NP_061728 C/G V106L plus 17835956 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 121 "HapMap,doubleHit,freq,cluster" 5q31 protocadherin alpha 2 33809 rs11167600 PCDHA2 56146 5 140155049 NM_031495 NP_113683 C/G V106L plus 17835956 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 121 "HapMap,doubleHit,freq,cluster" 5q31 protocadherin alpha 2 33810 rs11167600 PCDHA2 56146 5 140155049 NM_031496 NP_113684 C/G V106L plus 17835956 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.47 121 "HapMap,doubleHit,freq,cluster" 5q31 protocadherin alpha 2 33811 rs11167744 PCDHGA11 56105 5 140781288 NM_018914 NP_061737 C/T F104L plus 23675276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33812 rs11167744 PCDHGA11 56105 5 140781288 NM_018914 NP_061737 C/T F104L plus 23675276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33813 rs11167744 PCDHGA11 56105 5 140781288 NM_018914 NP_061737 C/T F104L plus 23675276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33814 rs11167744 PCDHGA11 56105 5 140781288 NM_032091 NP_114480 C/T F104L plus 23675276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33815 rs11167744 PCDHGA11 56105 5 140781288 NM_032091 NP_114480 C/T F104L plus 23675276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33816 rs11167744 PCDHGA11 56105 5 140781288 NM_032091 NP_114480 C/T F104L plus 23675276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33817 rs11167744 PCDHGA11 56105 5 140781288 NM_032092 NP_114481 C/T F104L plus 23675276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33818 rs11167744 PCDHGA11 56105 5 140781288 NM_032092 NP_114481 C/T F104L plus 23675276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33819 rs11167744 PCDHGA11 56105 5 140781288 NM_032092 NP_114481 C/T F104L plus 23675276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 11" 33820 rs11168459 OR10AD1 121275 12 46882508 XM_062553 XP_062553 A/G Y279H plus 23975987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.27 123 "by cluster,freq" 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 33821 rs11168459 OR10AD1 121275 12 46882508 XM_062553 XP_062553 A/G Y279H plus 23975987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.33 123 "by cluster,freq" 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 33822 rs11168459 OR10AD1 121275 12 46882508 XM_062553 XP_062553 A/G Y279H plus 23975987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 33823 rs11170187 K6IRS2 140807 12 51279079 NM_080747 NP_542785 C/T N171D plus 23955983 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 "by doubleHit,freq,cluster" 12q13.13 keratin protein K6irs 33824 rs11170187 K6IRS2 140807 12 51279079 NM_080747 NP_542785 C/T N171D plus 23955983 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq,cluster" 12q13.13 keratin protein K6irs 33825 rs11170187 K6IRS2 140807 12 51279079 NM_080747 NP_542785 C/T N171D plus 23955983 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 12q13.13 keratin protein K6irs 33826 rs11183610 SLC38A4 55089 12 45457031 NM_018018 NP_060488 A/G T366M plus 23947658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12q13 "solute carrier family 38, member 4" 33827 rs11183610 SLC38A4 55089 12 45457031 NM_018018 NP_060488 A/G T366M plus 23947658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 12q13 "solute carrier family 38, member 4" 33828 rs11183610 SLC38A4 55089 12 45457031 NM_018018 NP_060488 A/G T366M plus 23947658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 12q13 "solute carrier family 38, member 4" 33829 rs11187225 SEC15L1 54536 10 94704407 NM_019053 NP_061926 C/G L476V plus 23574749 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 "by cluster,freq" 10q23.33 SEC15-like 1 (S. cerevisiae) 33830 rs11187225 SEC15L1 54536 10 94704407 NM_019053 NP_061926 C/G L476V plus 23574749 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 "by cluster,freq" 10q23.33 SEC15-like 1 (S. cerevisiae) 33831 rs11187225 SEC15L1 54536 10 94704407 NM_019053 NP_061926 C/G L476V plus 23574749 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 "by cluster,freq" 10q23.33 SEC15-like 1 (S. cerevisiae) 33832 rs11190305 DNMBP 23268 10 101629867 NM_015221 NP_056036 A/C C1413W plus 24562407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 10q24.31 dynamin binding protein 33833 rs11190305 DNMBP 23268 10 101629867 NM_015221 NP_056036 A/C C1413W plus 24562407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 10q24.31 dynamin binding protein 33834 rs11190305 DNMBP 23268 10 101629867 NM_015221 NP_056036 A/C C1413W plus 24562407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 10q24.31 dynamin binding protein 33835 rs11190305 DNMBP 23268 10 101629867 NM_015221 NP_056036 A/C C1413W plus 24792835 1303 SEQUENOM CEPH CEPH (92) 184 0.34 123 "by doubleHit,freq,cluster" 10q24.31 dynamin binding protein 33836 rs11196389 NRAP 4892 10 115341995 NM_006175 NP_006166 A/G L1496P plus 24593517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33837 rs11196389 NRAP 4892 10 115341995 NM_006175 NP_006166 A/G L1496P plus 24593517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33838 rs11196389 NRAP 4892 10 115341995 NM_006175 NP_006166 A/G L1496P plus 24593517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33839 rs11196389 NRAP 4892 10 115341995 NM_198060 NP_932326 A/G L1531P plus 24593517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33840 rs11196389 NRAP 4892 10 115341995 NM_198060 NP_932326 A/G L1531P plus 24593517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33841 rs11196389 NRAP 4892 10 115341995 NM_198060 NP_932326 A/G L1531P plus 24593517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by doubleHit,freq" 10q24-q26 nebulin-related anchoring protein 33842 rs11196400 NRAP 4892 10 115383938 NM_006175 NP_006166 C/T D449N plus 23637652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33843 rs11196400 NRAP 4892 10 115383938 NM_006175 NP_006166 C/T D449N plus 23637652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33844 rs11196400 NRAP 4892 10 115383938 NM_006175 NP_006166 C/T D449N plus 23637652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33845 rs11196400 NRAP 4892 10 115383938 NM_198060 NP_932326 C/T D484N plus 23637652 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33846 rs11196400 NRAP 4892 10 115383938 NM_198060 NP_932326 C/T D484N plus 23637652 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33847 rs11196400 NRAP 4892 10 115383938 NM_198060 NP_932326 C/T D484N plus 23637652 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 10q24-q26 nebulin-related anchoring protein 33848 rs11200385 TACC2 10579 10 123832513 NM_206862 NP_996744 A/G V170I plus 23608540 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33849 rs11200385 TACC2 10579 10 123832513 NM_206862 NP_996744 A/G V170I plus 23608540 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33850 rs11200385 TACC2 10579 10 123832513 NM_206862 NP_996744 A/G V170I plus 23608540 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 "by doubleHit,freq,cluster" 10q26 "transforming, acidic coiled-coil containing protein 2" 33851 rs11200925 LRRC22 340745 10 85974303 XM_291697 XP_291697 A/G L220F plus 24527725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 10q23.2 leucine rich repeat containing 22 33852 rs11200925 LRRC22 340745 10 85974303 XM_291697 XP_291697 A/G L220F plus 24527725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10q23.2 leucine rich repeat containing 22 33853 rs11200925 LRRC22 340745 10 85974303 XM_291697 XP_291697 A/G L220F plus 24527725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 10q23.2 leucine rich repeat containing 22 33854 rs11200927 LRRC22 340745 10 85974424 XM_291697 XP_291697 G/T K179N plus 24069923 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 33855 rs11200927 LRRC22 340745 10 85974424 XM_291697 XP_291697 G/T K179N plus 24069923 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 33856 rs11200927 LRRC22 340745 10 85974424 XM_291697 XP_291697 G/T K179N plus 24069923 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 33857 rs11200933 LRRC21 26103 10 85987085 NM_015613 NP_056428 G/T L154M plus 24070016 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 33858 rs11200933 LRRC21 26103 10 85987085 NM_015613 NP_056428 G/T L154M plus 24070016 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 33859 rs11200933 LRRC21 26103 10 85987085 NM_015613 NP_056428 G/T L154M plus 24070016 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 33860 rs11202365 FAM35A 54537 10 88920229 NM_019054 NP_061927 A/T S550C plus 15886844 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 120 "HapMap,freq" 10q23.31 "family with sequence similarity 35, member A" 33861 rs11204871 SNX27 81609 1 148478119 NM_030918 NP_112180 A/G E459K plus 18082461 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit" 1q21.3 sorting nexin family member 27 33862 rs11205303 CRA 10903 1 146719486 NM_006697 NP_006688 C/T M139V plus 24273366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33863 rs11205303 CRA 10903 1 146719486 NM_006697 NP_006688 C/T M139V plus 24273366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33864 rs11205303 CRA 10903 1 146719486 NM_006697 NP_006688 C/T M139V plus 24273366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33865 rs11205303 CRA 10903 1 146719486 NM_181873 NP_870988 C/T M87V plus 24273366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33866 rs11205303 CRA 10903 1 146719486 NM_181873 NP_870988 C/T M87V plus 24273366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33867 rs11205303 CRA 10903 1 146719486 NM_181873 NP_870988 C/T M87V plus 24273366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by doubleHit,freq,cluster" 1q12-q21 cisplatin resistance associated 33868 rs11209026 IL23R 149233 1 67417979 NM_144701 NP_653302 A/G R381Q plus 15355790 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 "by cluster,freq" 1p31.3-p31.2 interleukin-23 receptor 33869 rs11209026 IL23R 149233 1 67417979 NM_144701 NP_653302 A/G R381Q plus 15355790 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.1 120 "by cluster,freq" 1p31.3-p31.2 interleukin-23 receptor 33870 rs11209026 IL23R 149233 1 67417979 NM_144701 NP_653302 A/G R381Q plus 15355790 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 "by cluster,freq" 1p31.3-p31.2 interleukin-23 receptor 33871 rs11213538 ARHGAP20 57569 11 110066484 NM_020809 NP_065860 C/T T39A plus 15622892 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 11q23.2 Rho GTPase activating protein 20 33872 rs11214733 USP28 57646 11 113193617 NM_020886 NP_065937 A/G S479L plus 16000997 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q23 ubiquitin specific protease 28 33873 rs11227664 SYT12 91683 11 66564137 NM_177963 NP_808878 A/C N170H plus 16271369 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 "HapMap,doubleHit" 11q13.1 synaptotagmin XII 33874 rs11228710 OR5AR1 219493 11 56187792 XM_166845 XP_166845 C/T Q19X plus 23608033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily AR, member 1" 33875 rs11228710 OR5AR1 219493 11 56187792 XM_166845 XP_166845 C/T Q19X plus 23608033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily AR, member 1" 33876 rs11228710 OR5AR1 219493 11 56187792 XM_166845 XP_166845 C/T Q19X plus 23608033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 11q12.1 "olfactory receptor, family 5, subfamily AR, member 1" 33877 rs11233400 RAB30 27314 11 82376294 NM_014488 NP_055303 A/C V115G plus 16271785 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q12-q14 "RAB30, member RAS oncogene family" 33878 rs11241095 WDR36 134430 5 110467408 NM_139281 NP_644810 A/G I264V plus 24369820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 "by doubleHit,freq,cluster" 5q22.2 WD repeat domain 36 33879 rs11241095 WDR36 134430 5 110467408 NM_139281 NP_644810 A/G I264V plus 24369820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by doubleHit,freq,cluster" 5q22.2 WD repeat domain 36 33880 rs11241095 WDR36 134430 5 110467408 NM_139281 NP_644810 A/G I264V plus 24369820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q22.2 WD repeat domain 36 33881 rs11244035 OBP2B 29989 9 133110873 NM_014581 NP_055396 C/T V167I plus 24531718 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 9q34 odorant binding protein 2B 33882 rs11244035 OBP2B 29989 9 133110873 NM_014581 NP_055396 C/T V167I plus 24531718 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 9q34 odorant binding protein 2B 33883 rs11244035 OBP2B 29989 9 133110873 NM_014581 NP_055396 C/T V167I plus 24531718 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q34 odorant binding protein 2B 33884 rs11247866 CATSPER4 378807 1 26201936 XM_371237 XP_371237 A/G Q77R plus 24616967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 1p35.3 "cation channel, sperm associated 4" 33885 rs11247866 CATSPER4 378807 1 26201936 XM_371237 XP_371237 A/G Q77R plus 24616967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 1p35.3 "cation channel, sperm associated 4" 33886 rs11247866 CATSPER4 378807 1 26201936 XM_371237 XP_371237 A/G Q77R plus 24616967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1p35.3 "cation channel, sperm associated 4" 33887 rs11254408 DNMT2 1787 10 17239784 NM_176086 NP_788274 A/C D112Y plus 23575139 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 "by cluster,freq" 10p15.1 DNA (cytosine-5-)-methyltransferase 2 33888 rs11254408 DNMT2 1787 10 17239784 NM_176086 NP_788274 A/C D112Y plus 23575139 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 "by cluster,freq" 10p15.1 DNA (cytosine-5-)-methyltransferase 2 33889 rs11254408 DNMT2 1787 10 17239784 NM_176086 NP_788274 A/C D112Y plus 23575139 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 "by cluster,freq" 10p15.1 DNA (cytosine-5-)-methyltransferase 2 33890 rs11264498 IQGAP3 128239 1 153339460 NM_178229 NP_839943 C/G V410L plus 24241507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 1q23.1 IQ motif containing GTPase activating protein 3 33891 rs11264498 IQGAP3 128239 1 153339460 NM_178229 NP_839943 C/G V410L plus 24241507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 1q23.1 IQ motif containing GTPase activating protein 3 33892 rs11264498 IQGAP3 128239 1 153339460 NM_178229 NP_839943 C/G V410L plus 24241507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 1q23.1 IQ motif containing GTPase activating protein 3 33893 rs11264542 PRCC 5546 1 153551042 NM_005973 NP_005964 C/T P136S plus 17328651 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,freq,cluster" 1q21.1 papillary renal cell carcinoma (translocation-associated) 33894 rs11264542 PRCC 5546 1 153551042 NM_199416 NP_955448 C/T P136S plus 17328651 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,freq,cluster" 1q21.1 papillary renal cell carcinoma (translocation-associated) 33895 rs11264680 TORC2 200186 1 150739151 NM_181715 NP_859066 C/T M147V plus 18073254 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.23 120 "HapMap,doubleHit,freq,cluster" 1q22 transducer of regulated cAMP response element-binding protein (CREB) 2 33896 rs11465207 MUC1 4582 1 151973122 NM_002456 NP_002447 A/G S160N minus 15354947 693 EGP_SNPS PDR90 NIHPDR 170 0.01 120 by freq 1q21 "mucin 1, transmembrane" 33897 rs11465207 MUC1 4582 1 151973122 NM_182741 NP_877418 A/G S402N minus 15354947 693 EGP_SNPS PDR90 NIHPDR 170 0.01 120 by freq 1q21 "mucin 1, transmembrane" 33898 rs11465228 ADAM19 8728 5 156935273 NM_033274 NP_150377 A/G G4S minus 15354975 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.15 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33899 rs11465228 ADAM19 8728 5 156935273 NM_033274 NP_150377 A/G G4S minus 15354975 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33900 rs11465228 ADAM19 8728 5 156935273 NM_033274 NP_150377 A/G G4S minus 15354975 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 33901 rs11465293 CCL24 6369 7 75087374 NM_002991 NP_002982 C/T S31F minus 15355057 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33902 rs11465293 CCL24 6369 7 75087374 NM_002991 NP_002982 C/T S31F minus 15355057 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33903 rs11465293 CCL24 6369 7 75087374 NM_002991 NP_002982 C/T S31F minus 15355057 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33904 rs11465312 CCL24 6369 7 75085821 NM_002991 NP_002982 A/G A102T minus 15355076 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33905 rs11465312 CCL24 6369 7 75085821 NM_002991 NP_002982 A/G A102T minus 15355076 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33906 rs11465312 CCL24 6369 7 75085821 NM_002991 NP_002982 A/G A102T minus 15355076 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33907 rs11465313 CCL24 6369 7 75085797 NM_002991 NP_002982 C/G Q110E minus 15355077 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33908 rs11465313 CCL24 6369 7 75085797 NM_002991 NP_002982 C/G Q110E minus 15355077 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33909 rs11465313 CCL24 6369 7 75085797 NM_002991 NP_002982 C/G Q110E minus 15355077 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 7q11.23 chemokine (C-C motif) ligand 24 33910 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355146 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 123 "by cluster,freq" 19p13 CD209 antigen 33911 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355146 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 19p13 CD209 antigen 33912 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355146 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 19p13 CD209 antigen 33913 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355148 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 123 "by cluster,freq" 19p13 CD209 antigen 33914 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355148 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 123 "by cluster,freq" 19p13 CD209 antigen 33915 rs11465376 CD209 30835 19 7716766 NM_021155 NP_066978 A/G R129Q minus 15355148 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 123 "by cluster,freq" 19p13 CD209 antigen 33916 rs11465377 CD209 30835 19 7716510 NM_021155 NP_066978 C/G E214D minus 15355147 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 120 by freq 19p13 CD209 antigen 33917 rs11465377 CD209 30835 19 7716510 NM_021155 NP_066978 C/G E214D minus 15355147 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 19p13 CD209 antigen 33918 rs11465377 CD209 30835 19 7716510 NM_021155 NP_066978 C/G E214D minus 15355147 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 19p13 CD209 antigen 33919 rs11465380 CD209 30835 19 7716428 NM_021155 NP_066978 C/G L242V minus 15355150 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 19p13 CD209 antigen 33920 rs11465380 CD209 30835 19 7716428 NM_021155 NP_066978 C/G L242V minus 15355150 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 19p13 CD209 antigen 33921 rs11465380 CD209 30835 19 7716428 NM_021155 NP_066978 C/G L242V minus 15355150 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 19p13 CD209 antigen 33922 rs11465553 IL17F 112744 6 52209717 NM_052872 NP_443104 A/G V155I minus 15355402 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 by freq 6p12 interleukin 17F 33923 rs11465553 IL17F 112744 6 52209717 NM_052872 NP_443104 A/G V155I minus 15355402 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.08 120 by freq 6p12 interleukin 17F 33924 rs11465553 IL17F 112744 6 52209717 NM_052872 NP_443104 A/G V155I minus 15355402 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 by freq 6p12 interleukin 17F 33925 rs11465553 IL17F 112744 6 52209717 NM_172343 NP_758846 A/G V101I minus 15355402 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 by freq 6p12 interleukin 17F 33926 rs11465553 IL17F 112744 6 52209717 NM_172343 NP_758846 A/G V101I minus 15355402 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.08 120 by freq 6p12 interleukin 17F 33927 rs11465553 IL17F 112744 6 52209717 NM_172343 NP_758846 A/G V101I minus 15355402 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 by freq 6p12 interleukin 17F 33928 rs11465716 IL18RAP 8807 2 102520294 NM_003853 NP_003844 A/G V350I plus 15355663 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 2p24.3-p24.1 interleukin 18 receptor accessory protein 33929 rs11465716 IL18RAP 8807 2 102520294 NM_003853 NP_003844 A/G V350I plus 15355663 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 2p24.3-p24.1 interleukin 18 receptor accessory protein 33930 rs11465716 IL18RAP 8807 2 102520294 NM_003853 NP_003844 A/G V350I plus 15355663 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 2p24.3-p24.1 interleukin 18 receptor accessory protein 33931 rs11466004 LY96 23643 8 75103829 NM_015364 NP_056179 C/T P157S plus 15356093 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 44 1 120 by freq 8q13.3 lymphocyte antigen 96 33932 rs11466004 LY96 23643 8 75103829 NM_015364 NP_056179 C/T P157S plus 15356093 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 by freq 8q13.3 lymphocyte antigen 96 33933 rs11466004 LY96 23643 8 75103829 NM_015364 NP_056179 C/T P157S plus 15356093 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 4 1 120 by freq 8q13.3 lymphocyte antigen 96 33934 rs11466026 MEFV 4210 16 3238948 NM_000243 NP_000234 C/G Q440E minus 15356124 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 16p13.3 Mediterranean fever 33935 rs11466026 MEFV 4210 16 3238948 NM_000243 NP_000234 C/G Q440E minus 15356124 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 38 1 120 by freq 16p13.3 Mediterranean fever 33936 rs11466026 MEFV 4210 16 3238948 NM_000243 NP_000234 C/G Q440E minus 15356124 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 16p13.3 Mediterranean fever 33937 rs11466045 MEFV 4210 16 3233881 NM_000243 NP_000234 C/T I591T minus 15356156 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 120 by freq 16p13.3 Mediterranean fever 33938 rs11466045 MEFV 4210 16 3233881 NM_000243 NP_000234 C/T I591T minus 15356156 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 16p13.3 Mediterranean fever 33939 rs11466045 MEFV 4210 16 3233881 NM_000243 NP_000234 C/T I591T minus 15356156 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 16p13.3 Mediterranean fever 33940 rs11466110 NGFB 4803 1 115541245 NM_002506 NP_002497 A/G V72M minus 15356260 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.04 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33941 rs11466110 NGFB 4803 1 115541245 NM_002506 NP_002497 A/G V72M minus 15356260 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 1 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33942 rs11466110 NGFB 4803 1 115541245 NM_002506 NP_002497 A/G V72M minus 15356260 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33943 rs11466111 NGFB 4803 1 115541220 NM_002506 NP_002497 A/G R80Q minus 15356261 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 1 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33944 rs11466111 NGFB 4803 1 115541220 NM_002506 NP_002497 A/G R80Q minus 15356261 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.03 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33945 rs11466111 NGFB 4803 1 115541220 NM_002506 NP_002497 A/G R80Q minus 15356261 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 by freq 1p13.1 "nerve growth factor, beta polypeptide" 33946 rs11466259 TGFA 7039 2 70595166 NM_003236 NP_003227 A/G V109M minus 15356458 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 2p13 "transforming growth factor, alpha" 33947 rs11466259 TGFA 7039 2 70595166 NM_003236 NP_003227 A/G V109M minus 15356458 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 2p13 "transforming growth factor, alpha" 33948 rs11466259 TGFA 7039 2 70595166 NM_003236 NP_003227 A/G V109M minus 15356458 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 2p13 "transforming growth factor, alpha" 33949 rs11466649 TLR10 81793 4 38599291 NM_030956 NP_112218 G/T A163S minus 15357135 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 by freq 4p14 toll-like receptor 10 33950 rs11466649 TLR10 81793 4 38599291 NM_030956 NP_112218 G/T A163S minus 15357135 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 4p14 toll-like receptor 10 33951 rs11466649 TLR10 81793 4 38599291 NM_030956 NP_112218 G/T A163S minus 15357135 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 4p14 toll-like receptor 10 33952 rs11466651 TLR10 81793 4 38598886 NM_030956 NP_112218 A/G V298I minus 15357138 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.08 120 by freq 4p14 toll-like receptor 10 33953 rs11466651 TLR10 81793 4 38598886 NM_030956 NP_112218 A/G V298I minus 15357138 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 4p14 toll-like receptor 10 33954 rs11466651 TLR10 81793 4 38598886 NM_030956 NP_112218 A/G V298I minus 15357138 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 4p14 toll-like receptor 10 33955 rs11466653 TLR10 81793 4 38598801 NM_030956 NP_112218 C/T M326T minus 15357140 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.06 120 by freq 4p14 toll-like receptor 10 33956 rs11466653 TLR10 81793 4 38598801 NM_030956 NP_112218 C/T M326T minus 15357140 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 4p14 toll-like receptor 10 33957 rs11466653 TLR10 81793 4 38598801 NM_030956 NP_112218 C/T M326T minus 15357140 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 4p14 toll-like receptor 10 33958 rs11466656 TLR10 81793 4 38598373 NM_030956 NP_112218 C/G R469G minus 15357145 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 120 by freq 4p14 toll-like receptor 10 33959 rs11466656 TLR10 81793 4 38598373 NM_030956 NP_112218 C/G R469G minus 15357145 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 4p14 toll-like receptor 10 33960 rs11466656 TLR10 81793 4 38598373 NM_030956 NP_112218 C/G R469G minus 15357145 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 4p14 toll-like receptor 10 33961 rs11466657 TLR10 81793 4 38598360 NM_030956 NP_112218 C/T I473T minus 15357146 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.02 120 by freq 4p14 toll-like receptor 10 33962 rs11466657 TLR10 81793 4 38598360 NM_030956 NP_112218 C/T I473T minus 15357146 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 by freq 4p14 toll-like receptor 10 33963 rs11466657 TLR10 81793 4 38598360 NM_030956 NP_112218 C/T I473T minus 15357146 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 0.17 120 by freq 4p14 toll-like receptor 10 33964 rs11466658 TLR10 81793 4 38598205 NM_030956 NP_112218 C/T R525W minus 15357147 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 by freq 4p14 toll-like receptor 10 33965 rs11466658 TLR10 81793 4 38598205 NM_030956 NP_112218 C/T R525W minus 15357147 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.05 120 by freq 4p14 toll-like receptor 10 33966 rs11466658 TLR10 81793 4 38598205 NM_030956 NP_112218 C/T R525W minus 15357147 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 4p14 toll-like receptor 10 33967 rs11466676 TNFRSF18 8784 1 1181747 NM_004195 NP_004186 C/G T43R minus 15357175 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33968 rs11466676 TNFRSF18 8784 1 1181747 NM_004195 NP_004186 C/G T43R minus 15357175 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33969 rs11466676 TNFRSF18 8784 1 1181747 NM_004195 NP_004186 C/G T43R minus 15357175 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33970 rs11466676 TNFRSF18 8784 1 1181747 NM_148901 NP_683699 C/G T43R minus 15357175 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33971 rs11466676 TNFRSF18 8784 1 1181747 NM_148901 NP_683699 C/G T43R minus 15357175 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33972 rs11466676 TNFRSF18 8784 1 1181747 NM_148901 NP_683699 C/G T43R minus 15357175 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33973 rs11466676 TNFRSF18 8784 1 1181747 NM_148902 NP_683700 C/G T43R minus 15357175 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 46 0.07 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33974 rs11466676 TNFRSF18 8784 1 1181747 NM_148902 NP_683700 C/G T43R minus 15357175 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33975 rs11466676 TNFRSF18 8784 1 1181747 NM_148902 NP_683700 C/G T43R minus 15357175 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33976 rs11466687 TNFRSF18 8784 1 1180793 NM_004195 NP_004186 A/G E64K minus 15357186 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33977 rs11466687 TNFRSF18 8784 1 1180793 NM_004195 NP_004186 A/G E64K minus 15357186 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33978 rs11466687 TNFRSF18 8784 1 1180793 NM_004195 NP_004186 A/G E64K minus 15357186 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33979 rs11466687 TNFRSF18 8784 1 1180793 NM_148901 NP_683699 A/G E64K minus 15357186 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33980 rs11466687 TNFRSF18 8784 1 1180793 NM_148901 NP_683699 A/G E64K minus 15357186 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33981 rs11466687 TNFRSF18 8784 1 1180793 NM_148901 NP_683699 A/G E64K minus 15357186 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33982 rs11466687 TNFRSF18 8784 1 1180793 NM_148902 NP_683700 A/G E64K minus 15357186 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33983 rs11466687 TNFRSF18 8784 1 1180793 NM_148902 NP_683700 A/G E64K minus 15357186 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33984 rs11466687 TNFRSF18 8784 1 1180793 NM_148902 NP_683700 A/G E64K minus 15357186 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33985 rs11466688 TNFRSF18 8784 1 1180736 NM_004195 NP_004186 A/G D83N minus 15357187 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33986 rs11466688 TNFRSF18 8784 1 1180736 NM_004195 NP_004186 A/G D83N minus 15357187 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33987 rs11466688 TNFRSF18 8784 1 1180736 NM_004195 NP_004186 A/G D83N minus 15357187 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33988 rs11466688 TNFRSF18 8784 1 1180736 NM_148901 NP_683699 A/G D83N minus 15357187 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33989 rs11466688 TNFRSF18 8784 1 1180736 NM_148901 NP_683699 A/G D83N minus 15357187 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33990 rs11466688 TNFRSF18 8784 1 1180736 NM_148901 NP_683699 A/G D83N minus 15357187 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33991 rs11466688 TNFRSF18 8784 1 1180736 NM_148902 NP_683700 A/G D83N minus 15357187 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 42 0.05 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33992 rs11466688 TNFRSF18 8784 1 1180736 NM_148902 NP_683700 A/G D83N minus 15357187 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33993 rs11466688 TNFRSF18 8784 1 1180736 NM_148902 NP_683700 A/G D83N minus 15357187 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33994 rs11466693 TNFRSF18 8784 1 1179421 NM_004195 NP_004186 A/G V173M minus 15357194 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 44 0.02 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33995 rs11466693 TNFRSF18 8784 1 1179421 NM_004195 NP_004186 A/G V173M minus 15357194 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33996 rs11466693 TNFRSF18 8784 1 1179421 NM_004195 NP_004186 A/G V173M minus 15357194 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33997 rs11466693 TNFRSF18 8784 1 1179421 NM_148902 NP_683700 A/G V173M minus 15357194 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 44 0.02 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33998 rs11466693 TNFRSF18 8784 1 1179421 NM_148902 NP_683700 A/G V173M minus 15357194 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 40 0.03 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 33999 rs11466693 TNFRSF18 8784 1 1179421 NM_148902 NP_683700 A/G V173M minus 15357194 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 1p36.3 "tumor necrosis factor receptor superfamily, member 18" 34000 rs11466802 ADAM19 8728 5 156847988 NM_033274 NP_150377 A/G A805T minus 15357345 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 0.04 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34001 rs11466802 ADAM19 8728 5 156847988 NM_033274 NP_150377 A/G A805T minus 15357345 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 1 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34002 rs11466802 ADAM19 8728 5 156847988 NM_033274 NP_150377 A/G A805T minus 15357345 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34003 rs11466803 ADAM19 8728 5 156847901 NM_033274 NP_150377 C/G P834A minus 15357346 846 IIPGA-WEISS-MARTINEZ D-0 CORIELL African-American 48 1 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34004 rs11466803 ADAM19 8728 5 156847901 NM_033274 NP_150377 C/G P834A minus 15357346 847 IIPGA-WEISS-MARTINEZ E-0 CEPH 36 0.06 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34005 rs11466803 ADAM19 8728 5 156847901 NM_033274 NP_150377 C/G P834A minus 15357346 848 IIPGA-WEISS-MARTINEZ E-1 CEPH 6 1 120 by freq 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 34006 rs11488569 INPP5B 3633 1 38007888 XM_375718 XP_375718 A/G M769T plus 24127713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 34007 rs11488569 INPP5B 3633 1 38007888 XM_375718 XP_375718 A/G M769T plus 24127713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 "by cluster,freq" 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 34008 rs11488569 INPP5B 3633 1 38007888 XM_375718 XP_375718 A/G M769T plus 24127713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 34009 rs11509438 GSTO1 9446 10 106017049 NM_004832 NP_004823 A/G E208K plus 15750449 1100 HVA TORREON Mexican (persons who are ingesting inorganic arsenic in their drinking water) 76 0.03 121 "by cluster,freq" 10q25.1 glutathione S-transferase omega 1 34010 rs11523871 DMBT1 1755 10 124319700 NM_004406 NP_004397 A/C P42T plus 24600799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34011 rs11523871 DMBT1 1755 10 124319700 NM_004406 NP_004397 A/C P42T plus 24600799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34012 rs11523871 DMBT1 1755 10 124319700 NM_004406 NP_004397 A/C P42T plus 24600799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34013 rs11523871 DMBT1 1755 10 124319700 NM_007329 NP_015568 A/C P42T plus 24600799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34014 rs11523871 DMBT1 1755 10 124319700 NM_007329 NP_015568 A/C P42T plus 24600799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34015 rs11523871 DMBT1 1755 10 124319700 NM_007329 NP_015568 A/C P42T plus 24600799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34016 rs11523871 DMBT1 1755 10 124319700 NM_017579 NP_060049 A/C P42T plus 24600799 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34017 rs11523871 DMBT1 1755 10 124319700 NM_017579 NP_060049 A/C P42T plus 24600799 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34018 rs11523871 DMBT1 1755 10 124319700 NM_017579 NP_060049 A/C P42T plus 24600799 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 10q25.3-q26.1 deleted in malignant brain tumors 1 34019 rs11537643 VWF 7450 12 5973333 NM_000552 NP_000543 A/G R2185Q minus 23713854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 12p13.3 von Willebrand factor 34020 rs11537643 VWF 7450 12 5973333 NM_000552 NP_000543 A/G R2185Q minus 23713854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 12p13.3 von Willebrand factor 34021 rs11537643 VWF 7450 12 5973333 NM_000552 NP_000543 A/G R2185Q minus 23713854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p13.3 von Willebrand factor 34022 rs11538264 BAT2 7916 6 31711168 NM_004638 NP_004629 A/G V1762M plus 23323596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34023 rs11538264 BAT2 7916 6 31711168 NM_004638 NP_004629 A/G V1762M plus 23323596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34024 rs11538264 BAT2 7916 6 31711168 NM_004638 NP_004629 A/G V1762M plus 23323596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34025 rs11538264 BAT2 7916 6 31711168 NM_080686 NP_542417 A/G V1774M plus 23323596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34026 rs11538264 BAT2 7916 6 31711168 NM_080686 NP_542417 A/G V1774M plus 23323596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34027 rs11538264 BAT2 7916 6 31711168 NM_080686 NP_542417 A/G V1774M plus 23323596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 6p21.3 HLA-B associated transcript 2 34028 rs11539696 ZNF277 11179 7 111574958 NM_021994 NP_068834 A/G V352M plus 24461665 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 7q31.1 zinc finger protein (C2H2 type) 277 34029 rs11539696 ZNF277 11179 7 111574958 NM_021994 NP_068834 A/G V352M plus 24461665 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7q31.1 zinc finger protein (C2H2 type) 277 34030 rs11539696 ZNF277 11179 7 111574958 NM_021994 NP_068834 A/G V352M plus 24461665 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q31.1 zinc finger protein (C2H2 type) 277 34031 rs11540746 DNALI1 7802 1 37692409 NM_003462 NP_003453 C/T A87V plus 23855700 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 1p35.1 "dynein, axonemal, light intermediate polypeptide 1" 34032 rs11540746 DNALI1 7802 1 37692409 NM_003462 NP_003453 C/T A87V plus 23855700 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 1p35.1 "dynein, axonemal, light intermediate polypeptide 1" 34033 rs11540746 DNALI1 7802 1 37692409 NM_003462 NP_003453 C/T A87V plus 23855700 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 1p35.1 "dynein, axonemal, light intermediate polypeptide 1" 34034 rs11540898 CUTL1 1523 7 101514724 NM_001913 NP_001904 A/G I545V plus 24452083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34035 rs11540898 CUTL1 1523 7 101514724 NM_001913 NP_001904 A/G I545V plus 24452083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34036 rs11540898 CUTL1 1523 7 101514724 NM_001913 NP_001904 A/G I545V plus 24452083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34037 rs11540898 CUTL1 1523 7 101514724 NM_181500 NP_852477 A/G I543V plus 24452083 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34038 rs11540898 CUTL1 1523 7 101514724 NM_181500 NP_852477 A/G I543V plus 24452083 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34039 rs11540898 CUTL1 1523 7 101514724 NM_181500 NP_852477 A/G I543V plus 24452083 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q22.1 "cut-like 1, CCAAT displacement protein (Drosophila)" 34040 rs11541244 COL15A1 1306 9 98911550 NM_001855 NP_001846 A/G V1332I plus 24796377 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 by freq 9q21-q22 "collagen, type XV, alpha 1" 34041 rs11541658 QSCN6 5768 1 176895047 NM_002826 NP_002817 A/G H444R plus 24796124 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 1q24 quiescin Q6 34042 rs11542623 MUF1 10489 1 46458184 NM_006369 NP_006360 C/T V609I plus 23842407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 1p34.1 MUF1 protein 34043 rs11542623 MUF1 10489 1 46458184 NM_006369 NP_006360 C/T V609I plus 23842407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 1p34.1 MUF1 protein 34044 rs11542623 MUF1 10489 1 46458184 NM_006369 NP_006360 C/T V609I plus 23842407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 1p34.1 MUF1 protein 34045 rs11543848 EGFR 1956 7 55003464 NM_005228 NP_005219 A/G R521K plus 24018170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34046 rs11543848 EGFR 1956 7 55003464 NM_005228 NP_005219 A/G R521K plus 24018170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34047 rs11543848 EGFR 1956 7 55003464 NM_005228 NP_005219 A/G R521K plus 24018170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34048 rs11543848 EGFR 1956 7 55003464 NM_201282 NP_958439 A/G R521K plus 24018170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34049 rs11543848 EGFR 1956 7 55003464 NM_201282 NP_958439 A/G R521K plus 24018170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34050 rs11543848 EGFR 1956 7 55003464 NM_201282 NP_958439 A/G R521K plus 24018170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34051 rs11543848 EGFR 1956 7 55003464 NM_201284 NP_958441 A/G R521K plus 24018170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34052 rs11543848 EGFR 1956 7 55003464 NM_201284 NP_958441 A/G R521K plus 24018170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34053 rs11543848 EGFR 1956 7 55003464 NM_201284 NP_958441 A/G R521K plus 24018170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by cluster,freq" 7p12 "epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)" 34054 rs11545941 PON2 5445 7 94685667 NM_000305 NP_000296 C/G A148G minus 23760956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "by cluster,freq" 7q21.3 paraoxonase 2 34055 rs11545941 PON2 5445 7 94685667 NM_000305 NP_000296 C/G A148G minus 23760956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "by cluster,freq" 7q21.3 paraoxonase 2 34056 rs11545941 PON2 5445 7 94685667 NM_000305 NP_000296 C/G A148G minus 23760956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 7q21.3 paraoxonase 2 34057 rs11545941 PON2 5445 7 94685667 NM_000305 NP_000296 C/G A148G minus 24796342 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 "by cluster,freq" 7q21.3 paraoxonase 2 34058 rs11547284 NDUFB9 4715 8 125631210 NM_005005 NP_004996 C/T P146S plus 23954281 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 8q13.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa" 34059 rs11547284 NDUFB9 4715 8 125631210 NM_005005 NP_004996 C/T P146S plus 23954281 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 8q13.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa" 34060 rs11547284 NDUFB9 4715 8 125631210 NM_005005 NP_004996 C/T P146S plus 23954281 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 8q13.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa" 34061 rs11547883 VRK3 51231 19 55202674 NM_016440 NP_057524 A/G F171L plus 23418762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13 vaccinia related kinase 3 34062 rs11547883 VRK3 51231 19 55202674 NM_016440 NP_057524 A/G F171L plus 23418762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 19q13 vaccinia related kinase 3 34063 rs11547883 VRK3 51231 19 55202674 NM_016440 NP_057524 A/G F171L plus 23418762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19q13 vaccinia related kinase 3 34064 rs11549015 EHD4 30844 15 40022608 NM_139265 NP_644670 A/G V154I minus 24390145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 15q11.1 EH-domain containing 4 34065 rs11549015 EHD4 30844 15 40022608 NM_139265 NP_644670 A/G V154I minus 24390145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q11.1 EH-domain containing 4 34066 rs11549015 EHD4 30844 15 40022608 NM_139265 NP_644670 A/G V154I minus 24390145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q11.1 EH-domain containing 4 34067 rs11549147 FDFT1 2222 8 11703746 NM_004462 NP_004453 A/G K45R plus 24796361 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 8p23.1-p22 farnesyl-diphosphate farnesyltransferase 1 34068 rs11549465 HIF1A 3091 14 61277310 NM_001530 NP_001521 C/T P582S plus 24616754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34069 rs11549465 HIF1A 3091 14 61277310 NM_001530 NP_001521 C/T P582S plus 24616754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34070 rs11549465 HIF1A 3091 14 61277310 NM_001530 NP_001521 C/T P582S plus 24616754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34071 rs11549465 HIF1A 3091 14 61277310 NM_181054 NP_851397 C/T P582S plus 24616754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34072 rs11549465 HIF1A 3091 14 61277310 NM_181054 NP_851397 C/T P582S plus 24616754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34073 rs11549465 HIF1A 3091 14 61277310 NM_181054 NP_851397 C/T P582S plus 24616754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q21-q24 "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" 34074 rs11549470 ANXA4 307 2 69945235 NM_001153 NP_001144 C/T T87M plus 23698341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 2p13 annexin A4 34075 rs11549470 ANXA4 307 2 69945235 NM_001153 NP_001144 C/T T87M plus 23698341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.25 123 "by cluster,freq" 2p13 annexin A4 34076 rs11549470 ANXA4 307 2 69945235 NM_001153 NP_001144 C/T T87M plus 23698341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 "by cluster,freq" 2p13 annexin A4 34077 rs11549918 ICAM5 7087 19 10263938 NM_003259 NP_003250 A/G V301I plus 24787559 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 by freq 19p13.2 "intercellular adhesion molecule 5, telencephalin" 34078 rs11549918 ICAM5 7087 19 10263938 NM_003259 NP_003250 A/G V301I plus 24796573 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 19p13.2 "intercellular adhesion molecule 5, telencephalin" 34079 rs11550034 ZNF3 7551 7 99314453 NM_017715 NP_060185 C/T I102T minus 17949545 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,doubleHit,freq,cluster" 7q22.1 zinc finger protein 3 (A8-51) 34080 rs11550034 ZNF3 7551 7 99314453 NM_032924 NP_116313 C/T I66T minus 17949545 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 121 "HapMap,doubleHit,freq,cluster" 7q22.1 zinc finger protein 3 (A8-51) 34081 rs11550699 EFHD1 80303 2 233362630 NM_025202 NP_079478 A/G K186R plus 23914170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 2q37.1 EF hand domain containing 1 34082 rs11550699 EFHD1 80303 2 233362630 NM_025202 NP_079478 A/G K186R plus 23914170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 2q37.1 EF hand domain containing 1 34083 rs11550699 EFHD1 80303 2 233362630 NM_025202 NP_079478 A/G K186R plus 23914170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 2q37.1 EF hand domain containing 1 34084 rs11550699 EFHD1 80303 2 233362630 NM_025202 NP_079478 A/G K186R plus 24792563 1303 SEQUENOM CEPH CEPH (92) 184 0.33 123 "by cluster,freq" 2q37.1 EF hand domain containing 1 34085 rs11551944 RTN3 10313 11 63205701 NM_006054 NP_006045 A/C A6E plus 24316823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q13 reticulon 3 34086 rs11551944 RTN3 10313 11 63205701 NM_006054 NP_006045 A/C A6E plus 24316823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 11q13 reticulon 3 34087 rs11551944 RTN3 10313 11 63205701 NM_006054 NP_006045 A/C A6E plus 24316823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q13 reticulon 3 34088 rs11551944 RTN3 10313 11 63205701 NM_201428 NP_958831 A/C A6E plus 24316823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q13 reticulon 3 34089 rs11551944 RTN3 10313 11 63205701 NM_201428 NP_958831 A/C A6E plus 24316823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 11q13 reticulon 3 34090 rs11551944 RTN3 10313 11 63205701 NM_201428 NP_958831 A/C A6E plus 24316823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q13 reticulon 3 34091 rs11551944 RTN3 10313 11 63205701 NM_201429 NP_958832 A/C A6E plus 24316823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q13 reticulon 3 34092 rs11551944 RTN3 10313 11 63205701 NM_201429 NP_958832 A/C A6E plus 24316823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 11q13 reticulon 3 34093 rs11551944 RTN3 10313 11 63205701 NM_201429 NP_958832 A/C A6E plus 24316823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q13 reticulon 3 34094 rs11551944 RTN3 10313 11 63205701 NM_201430 NP_958833 A/C A6E plus 24316823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q13 reticulon 3 34095 rs11551944 RTN3 10313 11 63205701 NM_201430 NP_958833 A/C A6E plus 24316823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 11q13 reticulon 3 34096 rs11551944 RTN3 10313 11 63205701 NM_201430 NP_958833 A/C A6E plus 24316823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q13 reticulon 3 34097 rs11552377 CCM2 83605 7 44877371 NM_031443 NP_113631 A/G V120I plus 24459073 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 7p13 cerebral cavernous malformation 2 34098 rs11552377 CCM2 83605 7 44877371 NM_031443 NP_113631 A/G V120I plus 24459073 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 7p13 cerebral cavernous malformation 2 34099 rs11552377 CCM2 83605 7 44877371 NM_031443 NP_113631 A/G V120I plus 24459073 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 7p13 cerebral cavernous malformation 2 34100 rs11553405 OXA1L 5018 14 22307052 NM_005015 NP_005006 A/G V151I plus 23815116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 "by cluster,freq" 14q11.2 oxidase (cytochrome c) assembly 1-like 34101 rs11553405 OXA1L 5018 14 22307052 NM_005015 NP_005006 A/G V151I plus 23815116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 14q11.2 oxidase (cytochrome c) assembly 1-like 34102 rs11553405 OXA1L 5018 14 22307052 NM_005015 NP_005006 A/G V151I plus 23815116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 "by cluster,freq" 14q11.2 oxidase (cytochrome c) assembly 1-like 34103 rs11556157 D2LIC 51626 2 43939664 NM_016008 NP_057092 A/T I230L plus 23715667 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 2p25.1-p24.1 dynein 2 light intermediate chain 34104 rs11556157 D2LIC 51626 2 43939664 NM_016008 NP_057092 A/T I230L plus 23715667 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by cluster,freq" 2p25.1-p24.1 dynein 2 light intermediate chain 34105 rs11556157 D2LIC 51626 2 43939664 NM_016008 NP_057092 A/T I230L plus 23715667 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2p25.1-p24.1 dynein 2 light intermediate chain 34106 rs11556377 MYBL2 4605 20 41775119 NM_002466 NP_002457 C/T V595M minus 23648547 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 34107 rs11556377 MYBL2 4605 20 41775119 NM_002466 NP_002457 C/T V595M minus 23648547 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 34108 rs11556377 MYBL2 4605 20 41775119 NM_002466 NP_002457 C/T V595M minus 23648547 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 20q13.1 v-myb myeloblastosis viral oncogene homolog (avian)-like 2 34109 rs11556563 NYD-SP20 84690 17 3299059 NM_032598 NP_115987 A/G Q155R minus 24704335 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 by freq 17p13.3 testes development-related NYD-SP20 34110 rs11556563 NYD-SP20 84690 17 3299059 NM_032598 NP_115987 A/G Q155R minus 24704335 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 17p13.3 testes development-related NYD-SP20 34111 rs11556563 NYD-SP20 84690 17 3299059 NM_032598 NP_115987 A/G Q155R minus 24704335 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 testes development-related NYD-SP20 34112 rs11556888 SP110 3431 2 230902615 NM_004509 NP_004500 A/G E207K minus 24796180 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 2q37.1 SP110 nuclear body protein 34113 rs11556888 SP110 3431 2 230902615 NM_004510 NP_004501 A/G E207K minus 24796180 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 2q37.1 SP110 nuclear body protein 34114 rs11556888 SP110 3431 2 230902615 NM_080424 NP_536349 A/G E207K minus 24796180 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 2q37.1 SP110 nuclear body protein 34115 rs11558492 GNPAT 8443 1 227714826 NM_014236 NP_055051 C/T D519G minus 24634450 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 1q42.11-42.3 glyceronephosphate O-acyltransferase 34116 rs11558492 GNPAT 8443 1 227714826 NM_014236 NP_055051 C/T D519G minus 24634450 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q42.11-42.3 glyceronephosphate O-acyltransferase 34117 rs11558492 GNPAT 8443 1 227714826 NM_014236 NP_055051 C/T D519G minus 24634450 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 1q42.11-42.3 glyceronephosphate O-acyltransferase 34118 rs11558511 PC326 55827 1 164745508 NM_018442 NP_060912 C/T V220A plus 23855355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.2 123 "by cluster,freq" 1q23.3 PC326 protein 34119 rs11558511 PC326 55827 1 164745508 NM_018442 NP_060912 C/T V220A plus 23855355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 1q23.3 PC326 protein 34120 rs11558511 PC326 55827 1 164745508 NM_018442 NP_060912 C/T V220A plus 23855355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 "by cluster,freq" 1q23.3 PC326 protein 34121 rs11564522 PLA2G4C 8605 19 53300461 NM_003706 NP_003697 A/G E21K minus 16316136 693 EGP_SNPS PDR90 NIHPDR 176 0.01 120 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34122 rs11564532 PLA2G4C 8605 19 53294807 NM_003706 NP_003697 C/T A127V minus 16316150 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34123 rs11564534 PLA2G4C 8605 19 53294763 NM_003706 NP_003697 G/T V142F minus 16316152 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34124 rs11564538 PLA2G4C 8605 19 53293324 NM_003706 NP_003697 C/T P151L minus 16316161 693 EGP_SNPS PDR90 NIHPDR 178 0.08 123 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34125 rs11564538 PLA2G4C 8605 19 53293324 NM_003706 NP_003697 C/T P151L minus 24531593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34126 rs11564538 PLA2G4C 8605 19 53293324 NM_003706 NP_003697 C/T P151L minus 24531593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34127 rs11564538 PLA2G4C 8605 19 53293324 NM_003706 NP_003697 C/T P151L minus 24531593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34128 rs11564620 PLA2G4C 8605 19 53262884 NM_003706 NP_003697 A/C T360P minus 16316272 693 EGP_SNPS PDR90 NIHPDR 180 0.08 120 by freq 19q13.3 "phospholipase A2, group IVC (cytosolic, calcium-independent)" 34129 rs11567997 CDC25C 995 5 137653127 NM_001790 NP_001781 C/G G297R minus 16338888 693 EGP_SNPS PDR90 NIHPDR 170 0.01 120 by freq 5q31 cell division cycle 25C 34130 rs11567997 CDC25C 995 5 137653127 NM_022809 NP_073720 C/G G224R minus 16338888 693 EGP_SNPS PDR90 NIHPDR 170 0.01 120 by freq 5q31 cell division cycle 25C 34131 rs11568099 ALOX15 246 17 4489502 NM_001140 NP_001131 C/G N103K minus 16339072 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 120 by freq 17p13.3 arachidonate 15-lipoxygenase 34132 rs11568101 ALOX15 246 17 4488657 NM_001140 NP_001131 A/G R205Q minus 16339075 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.06 120 by freq 17p13.3 arachidonate 15-lipoxygenase 34133 rs11568178 MLC1 23209 22 48815188 NM_015166 NP_055981 A/G V210I minus 16339170 1071 FGU-IGIB IND_POP Indian 1044 0.01 120 by freq 22q13.33 megalencephalic leukoencephalopathy with subcortical cysts 1 34134 rs11568178 MLC1 23209 22 48815188 NM_139202 NP_631941 A/G V210I minus 16339170 1071 FGU-IGIB IND_POP Indian 1044 0.01 120 by freq 22q13.33 megalencephalic leukoencephalopathy with subcortical cysts 1 34135 rs11568188 MLC1 23209 22 48804948 NM_015166 NP_055981 A/G N344S minus 16339180 1071 FGU-IGIB IND_POP Indian 1044 0.23 120 by freq 22q13.33 megalencephalic leukoencephalopathy with subcortical cysts 1 34136 rs11568188 MLC1 23209 22 48804948 NM_139202 NP_631941 A/G N344S minus 16339180 1071 FGU-IGIB IND_POP Indian 1044 0.23 120 by freq 22q13.33 megalencephalic leukoencephalopathy with subcortical cysts 1 34137 rs11568325 SLC6A2 6530 16 54283395 NM_001043 NP_001034 C/G T283R plus 16339409 1134 PHARMGKB_PMT PA128127880 478 0 120 by freq 16q12.2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" 34138 rs11568346 SLC40A1 30061 2 190252145 NM_014585 NP_055400 A/G R561G minus 16339437 1135 PHARMGKB_PMT PA130044337 494 0.01 120 by freq 2q32 "solute carrier family 40 (iron-regulated transporter), member 1" 34139 rs11568350 SLC40A1 30061 2 190255602 NM_014585 NP_055400 G/T Q248H minus 16339443 1135 PHARMGKB_PMT PA130044337 494 0.03 120 by freq 2q32 "solute carrier family 40 (iron-regulated transporter), member 1" 34140 rs11568355 SLC40A1 30061 2 190253924 NM_014585 NP_055400 A/G M432V minus 16339448 1135 PHARMGKB_PMT PA130044337 494 0.01 120 by freq 2q32 "solute carrier family 40 (iron-regulated transporter), member 1" 34141 rs11568357 ABCB11 8647 2 169675895 NM_003742 NP_003733 A/G I206V minus 16339451 1136 PHARMGKB_PMT PA129840880 494 0.01 120 by freq 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 34142 rs11568364 ABCB11 8647 2 169650490 NM_003742 NP_003733 A/G M677V minus 16339467 1136 PHARMGKB_PMT PA129840880 494 0.09 120 by freq 2q24 "ATP-binding cassette, sub-family B (MDR/TAP), member 11" 34143 rs11568403 SLC28A3 64078 9 84185089 NM_022127 NP_071410 A/G S5N minus 16339524 1137 PHARMGKB_PMT PA129447440 552 0.02 120 by freq 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 34144 rs11568418 SLC28A3 64078 9 84137178 NM_022127 NP_071410 A/G I328V minus 16339540 1137 PHARMGKB_PMT PA129447440 552 0.02 120 by freq 9q22.2 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3" 34145 rs11568437 SLC7A7 9056 14 22351973 NM_003982 NP_003973 C/T R159C minus 16339566 1138 PHARMGKB_PMT PA129478397 552 0.01 120 by freq 14q11.2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 7" 34146 rs11568438 SLC7A7 9056 14 22352176 NM_003982 NP_003973 C/T A91V minus 16339567 1138 PHARMGKB_PMT PA129478397 552 0 120 by freq 14q11.2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 7" 34147 rs11568442 SLC13A2 9058 17 23845217 NM_003984 NP_003975 C/T P385S plus 16339571 1139 PHARMGKB_PMT PA129532061 552 0 120 by freq 17p13.2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" 34148 rs11568454 SLC13A2 9058 17 23848283 NM_003984 NP_003975 A/G I550V plus 16339583 1139 PHARMGKB_PMT PA129532061 552 0.48 120 by freq 17p13.2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" 34149 rs11568482 SLC22A8 9376 11 62519840 NM_004254 NP_004245 A/T I305F minus 16339615 1140 PHARMGKB_PMT PA129876440 552 0.01 120 by freq 11q11 "solute carrier family 22 (organic anion transporter), member 8" 34150 rs11568486 SLC22A8 9376 11 62517659 NM_004254 NP_004245 A/G V448I minus 16339620 1140 PHARMGKB_PMT PA129876440 552 0.01 120 by freq 11q11 "solute carrier family 22 (organic anion transporter), member 8" 34151 rs11568489 SLC22A8 9376 11 62523883 NM_004254 NP_004245 A/C R149S minus 16339623 1140 PHARMGKB_PMT PA129876440 552 0 120 by freq 11q11 "solute carrier family 22 (organic anion transporter), member 8" 34152 rs11568491 SLC22A8 9376 11 62520120 NM_004254 NP_004245 C/T V281A minus 16339626 1140 PHARMGKB_PMT PA129876440 552 0.02 120 by freq 11q11 "solute carrier family 22 (organic anion transporter), member 8" 34153 rs11568520 SLC22A5 6584 5 131733614 NM_003060 NP_003051 C/G F17L plus 16339669 1142 PHARMGKB_PMT PA129604802 552 0 120 by freq 5q31 "solute carrier family 22 (organic cation transporter), member 5" 34154 rs11568525 SLC22A5 6584 5 131757834 NM_003060 NP_003051 C/T P549S plus 16339677 1142 PHARMGKB_PMT PA129604802 552 0.03 120 by freq 5q31 "solute carrier family 22 (organic cation transporter), member 5" 34155 rs11568527 SLC17A8 246213 12 99253660 NM_139319 NP_647480 C/T T8I plus 16339679 1143 PHARMGKB_PMT PA129616407 552 0.01 120 by freq 12q23.3 "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8" 34156 rs11568557 SLCO1A2 6579 12 21313759 NM_021094 NP_066580 C/G T668S minus 16339713 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34157 rs11568557 SLCO1A2 6579 12 21313759 NM_134431 NP_602307 C/G T668S minus 16339713 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34158 rs11568563 SLCO1A2 6579 12 21348701 NM_005075 NP_005066 A/C E170D minus 16339720 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34159 rs11568563 SLCO1A2 6579 12 21348701 NM_021094 NP_066580 A/C E172D minus 16339720 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34160 rs11568563 SLCO1A2 6579 12 21348701 NM_134431 NP_602307 A/C E172D minus 16339720 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34161 rs11568566 SLCO1A2 6579 12 21351121 NM_005075 NP_005066 A/T N133I minus 16339727 1144 PHARMGKB_PMT PA129888520 552 0 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34162 rs11568566 SLCO1A2 6579 12 21351121 NM_021094 NP_066580 A/T N135I minus 16339727 1144 PHARMGKB_PMT PA129888520 552 0 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34163 rs11568566 SLCO1A2 6579 12 21351121 NM_134431 NP_602307 A/T N135I minus 16339727 1144 PHARMGKB_PMT PA129888520 552 0 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34164 rs11568567 SLCO1A2 6579 12 21351143 NM_005075 NP_005066 A/T N126Y minus 16339728 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34165 rs11568567 SLCO1A2 6579 12 21351143 NM_021094 NP_066580 A/T N128Y minus 16339728 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34166 rs11568567 SLCO1A2 6579 12 21351143 NM_134431 NP_602307 A/T N128Y minus 16339728 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34167 rs11568578 SLCO1A2 6579 12 21341617 NM_005075 NP_005066 A/G I353V minus 16339743 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34168 rs11568578 SLCO1A2 6579 12 21341617 NM_021094 NP_066580 A/G I355V minus 16339743 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34169 rs11568578 SLCO1A2 6579 12 21341617 NM_134431 NP_602307 A/G I355V minus 16339743 1144 PHARMGKB_PMT PA129888520 552 0.01 120 by freq 12p12 "solute carrier organic anion transporter family, member 1A2" 34170 rs11568588 ABCC3 8714 17 46116396 NM_003786 NP_003777 C/T R1348C plus 16339758 1145 PHARMGKB_PMT PA129412216 552 0.02 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34171 rs11568590 ABCC3 8714 17 46116448 NM_003786 NP_003777 A/G Q1365R plus 16339760 1145 PHARMGKB_PMT PA129412216 552 0 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34172 rs11568591 ABCC3 8714 17 46116052 NM_003786 NP_003777 A/G R1297H plus 16339761 1145 PHARMGKB_PMT PA129412216 552 0.01 123 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34173 rs11568591 ABCC3 8714 17 46116052 NM_003786 NP_003777 A/G R1297H plus 24572479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34174 rs11568591 ABCC3 8714 17 46116052 NM_003786 NP_003777 A/G R1297H plus 24572479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34175 rs11568591 ABCC3 8714 17 46116052 NM_003786 NP_003777 A/G R1297H plus 24572479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34176 rs11568597 ABCC3 8714 17 46117096 NM_003786 NP_003777 A/C R1381S plus 16339768 1145 PHARMGKB_PMT PA129412216 552 0 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34177 rs11568602 ABCC3 8714 17 46099952 NM_020038 NP_064422 C/G D509H plus 16339773 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34178 rs11568604 ABCC3 8714 17 46096059 NM_020038 NP_064422 C/T L358F plus 16339775 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34179 rs11568605 ABCC3 8714 17 46096079 NM_003786 NP_003777 C/T S346F plus 16339776 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34180 rs11568605 ABCC3 8714 17 46096079 NM_020037 NP_064421 C/T S346F plus 16339776 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34181 rs11568608 ABCC3 8714 17 46100827 NM_003786 NP_003777 A/G S607N plus 16339779 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34182 rs11568608 ABCC3 8714 17 46100827 NM_020037 NP_064421 A/G S607N plus 16339779 1145 PHARMGKB_PMT PA129412216 552 0.01 120 by freq 17q22 "ATP-binding cassette, sub-family C (CFTR/MRP), member 3" 34183 rs11568612 SLC22A6 9356 11 62505352 NM_004790 NP_004781 C/T R293W minus 16339783 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34184 rs11568612 SLC22A6 9356 11 62505352 NM_153276 NP_695008 C/T R293W minus 16339783 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34185 rs11568612 SLC22A6 9356 11 62505352 NM_153277 NP_695009 C/T R293W minus 16339783 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34186 rs11568612 SLC22A6 9356 11 62505352 NM_153278 NP_695010 C/T R293W minus 16339783 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34187 rs11568612 SLC22A6 9356 11 62505352 NM_153279 NP_695011 C/T R272W minus 16339783 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34188 rs11568626 SLC22A6 9356 11 62508590 NM_004790 NP_004781 A/G R50H minus 16339800 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34189 rs11568626 SLC22A6 9356 11 62508590 NM_153276 NP_695008 A/G R50H minus 16339800 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34190 rs11568626 SLC22A6 9356 11 62508590 NM_153277 NP_695009 A/G R50H minus 16339800 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34191 rs11568626 SLC22A6 9356 11 62508590 NM_153278 NP_695010 A/G R50H minus 16339800 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34192 rs11568626 SLC22A6 9356 11 62508590 NM_153279 NP_695011 A/G R29H minus 16339800 1146 PHARMGKB_PMT PA129969614 552 0.01 120 by freq 11q13.1-q13.2 "solute carrier family 22 (organic anion transporter), member 6" 34193 rs11568657 ABCC4 10257 13 94661017 NM_005845 NP_005836 C/T M184T minus 16339842 1147 PHARMGKB_PMT PA129732580 552 0 120 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34194 rs11568658 ABCC4 10257 13 94661009 NM_005845 NP_005836 G/T G187W minus 16339843 1147 PHARMGKB_PMT PA129732580 552 0.05 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34195 rs11568658 ABCC4 10257 13 94661009 NM_005845 NP_005836 G/T G187W minus 24224453 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34196 rs11568658 ABCC4 10257 13 94661009 NM_005845 NP_005836 G/T G187W minus 24224453 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34197 rs11568658 ABCC4 10257 13 94661009 NM_005845 NP_005836 G/T G187W minus 24224453 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34198 rs11568669 ABCC4 10257 13 94637009 NM_005845 NP_005836 A/G K498E minus 16339855 1147 PHARMGKB_PMT PA129732580 552 0.01 120 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34199 rs11568673 ABCC4 10257 13 94525795 NM_005845 NP_005836 G/T V900L minus 16339860 1147 PHARMGKB_PMT PA129732580 552 0 120 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34200 rs11568681 ABCC4 10257 13 94751518 NM_005845 NP_005836 A/C L18I minus 16339870 1147 PHARMGKB_PMT PA129732580 552 0.03 120 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34201 rs11568692 ABCC4 10257 13 94533503 NM_005845 NP_005836 A/G V860M minus 16339885 1147 PHARMGKB_PMT PA129732580 552 0 120 by freq 13q32 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" 34202 rs11568728 CYP2D6 1565 22 40849444 NM_000106 NP_000097 A/G G169E minus 16339938 1152 PHARMGKB_SERM PA129969130 160 0.17 120 by freq 22q13.1 "cytochrome P450, family 2, subfamily D, polypeptide 6" 34203 rs11568849 EGF 1950 4 111192141 NM_001963 NP_001954 A/C S16R plus 16340127 693 EGP_SNPS PDR90 NIHPDR 174 0.01 120 by freq 4q25 epidermal growth factor (beta-urogastrone) 34204 rs11568943 EGF 1950 4 111240725 NM_001963 NP_001954 A/G R431K plus 16340249 693 EGP_SNPS PDR90 NIHPDR 166 0.1 123 by freq 4q25 epidermal growth factor (beta-urogastrone) 34205 rs11568943 EGF 1950 4 111240725 NM_001963 NP_001954 A/G R431K plus 23276314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q25 epidermal growth factor (beta-urogastrone) 34206 rs11568943 EGF 1950 4 111240725 NM_001963 NP_001954 A/G R431K plus 23276314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 4q25 epidermal growth factor (beta-urogastrone) 34207 rs11568943 EGF 1950 4 111240725 NM_001963 NP_001954 A/G R431K plus 23276314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 4q25 epidermal growth factor (beta-urogastrone) 34208 rs11569017 EGF 1950 4 111259715 NM_001963 NP_001954 A/T D784V plus 16340347 693 EGP_SNPS PDR90 NIHPDR 166 0.05 120 by freq 4q25 epidermal growth factor (beta-urogastrone) 34209 rs11569046 EGF 1950 4 111266537 NM_001963 NP_001954 C/T M842T plus 16340383 693 EGP_SNPS PDR90 NIHPDR 164 0.04 123 "by cluster,freq" 4q25 epidermal growth factor (beta-urogastrone) 34210 rs11569046 EGF 1950 4 111266537 NM_001963 NP_001954 C/T M842T plus 23276727 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 4q25 epidermal growth factor (beta-urogastrone) 34211 rs11569046 EGF 1950 4 111266537 NM_001963 NP_001954 C/T M842T plus 23276727 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 4q25 epidermal growth factor (beta-urogastrone) 34212 rs11569046 EGF 1950 4 111266537 NM_001963 NP_001954 C/T M842T plus 23276727 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q25 epidermal growth factor (beta-urogastrone) 34213 rs11569098 EGF 1950 4 111278560 NM_001963 NP_001954 C/T L1043F plus 16340448 693 EGP_SNPS PDR90 NIHPDR 176 0.01 120 by freq 4q25 epidermal growth factor (beta-urogastrone) 34214 rs11569321 TNFRSF5 958 20 44184770 NM_001250 NP_001241 C/T S124L plus 16340733 693 EGP_SNPS PDR90 NIHPDR 160 0.01 120 by freq 20q12-q13.2 "tumor necrosis factor receptor superfamily, member 5" 34215 rs11569321 TNFRSF5 958 20 44184770 NM_152854 NP_690593 C/T S124L plus 16340733 693 EGP_SNPS PDR90 NIHPDR 160 0.01 120 by freq 20q12-q13.2 "tumor necrosis factor receptor superfamily, member 5" 34216 rs11569422 C3 718 19 6662070 NM_000064 NP_000055 C/G E469D minus 16340876 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 120 by freq 19p13.3-p13.2 complement component 3 34217 rs11569636 PLTP 5360 20 43971676 NM_006227 NP_006218 A/C S124Y minus 16341183 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 42 0.02 120 by freq 20q12-q13.1 phospholipid transfer protein 34218 rs11569636 PLTP 5360 20 43971676 NM_006227 NP_006218 A/C S124Y minus 16341183 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.02 120 by freq 20q12-q13.1 phospholipid transfer protein 34219 rs11569679 SULT2A1 6822 19 53066601 NM_003167 NP_003158 A/G A261T minus 16341245 1166 PHARMGKB_PPII PA128747821 240 0.07 120 by freq 19q13.3 "sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA) -preferring, member 1" 34220 rs11569681 SULT2A1 6822 19 53078804 NM_003167 NP_003158 C/G A63P minus 16341248 1166 PHARMGKB_PPII PA128747821 240 0.03 120 by freq 19q13.3 "sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA) -preferring, member 1" 34221 rs11569736 SULT1B1 27284 4 70780685 NM_014465 NP_055280 G/T L145V minus 16341348 1166 PHARMGKB_PPII PA128747821 240 0.03 120 by freq 4q13.3 "sulfotransferase family, cytosolic, 1B, member 1" 34222 rs11569763 SULT1A2 6799 16 28511184 NM_001054 NP_001045 C/G H226D minus 16341389 1166 PHARMGKB_PPII PA128747821 240 0.01 120 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 34223 rs11569763 SULT1A2 6799 16 28511184 NM_177528 NP_803564 C/G H226D minus 16341389 1166 PHARMGKB_PPII PA128747821 240 0.01 120 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 34224 rs11569766 SULT1A2 6799 16 28511144 NM_001054 NP_001045 A/G N239S minus 16341393 1166 PHARMGKB_PPII PA128747821 240 0.01 120 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 34225 rs11569766 SULT1A2 6799 16 28511144 NM_177528 NP_803564 A/G N239S minus 16341393 1166 PHARMGKB_PPII PA128747821 240 0.01 120 by freq 16p12.1 "sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2" 34226 rs11569892 TNFRSF8 943 1 12109924 NM_001243 NP_001234 A/G C273Y plus 16341576 693 EGP_SNPS PDR90 NIHPDR 176 0.02 120 by freq 1p36 "tumor necrosis factor receptor superfamily, member 8" 34227 rs11569913 TNFRSF8 943 1 12120324 NM_001243 NP_001234 A/G S402G plus 16341603 693 EGP_SNPS PDR90 NIHPDR 152 0.09 120 by freq 1p36 "tumor necrosis factor receptor superfamily, member 8" 34228 rs11570222 CTNND1 1500 11 57339484 NM_001331 NP_001322 A/G R888K plus 16342054 693 EGP_SNPS PDR90 NIHPDR 170 0.08 123 "by cluster,freq" 11q11 "catenin (cadherin-associated protein), delta 1" 34229 rs11570222 CTNND1 1500 11 57339484 NM_001331 NP_001322 A/G R888K plus 23589530 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q11 "catenin (cadherin-associated protein), delta 1" 34230 rs11570222 CTNND1 1500 11 57339484 NM_001331 NP_001322 A/G R888K plus 23589530 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "by cluster,freq" 11q11 "catenin (cadherin-associated protein), delta 1" 34231 rs11570222 CTNND1 1500 11 57339484 NM_001331 NP_001322 A/G R888K plus 23589530 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q11 "catenin (cadherin-associated protein), delta 1" 34232 rs11570605 PLA2G6 8398 22 36889762 NM_003560 NP_003551 A/G V58I minus 16342600 693 EGP_SNPS PDR90 NIHPDR 176 0.02 120 by freq 22q13.1 "phospholipase A2, group VI (cytosolic, calcium-independent)" 34233 rs11570606 PLA2G6 8398 22 36889747 NM_003560 NP_003551 A/G R63G minus 16342601 693 EGP_SNPS PDR90 NIHPDR 176 0.02 120 by freq 22q13.1 "phospholipase A2, group VI (cytosolic, calcium-independent)" 34234 rs11571098 REN 5972 1 200866982 NM_000537 NP_000528 C/T R33W minus 16343301 1122 PARC PARC-AFRICAN-PANEL CORIELL African-American (24) 48 0.04 121 "by cluster,freq" 1q32 renin 34235 rs11571098 REN 5972 1 200866982 NM_000537 NP_000528 C/T R33W minus 20420843 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 1q32 renin 34236 rs11571117 REN 5972 1 200860224 NM_000537 NP_000528 A/G G217R minus 16343321 1122 PARC PARC-AFRICAN-PANEL CORIELL African-American (24) 48 0.1 121 "by cluster,freq" 1q32 renin 34237 rs11571117 REN 5972 1 200860224 NM_000537 NP_000528 A/G G217R minus 20420865 889 PHARMGKB_PARC PA128275074 94 0.05 121 "by cluster,freq" 1q32 renin 34238 rs11571147 PGR 5241 11 100503972 NM_000926 NP_000917 C/G C347S minus 16343361 693 EGP_SNPS PDR90 NIHPDR 170 0.02 120 by freq 11q22-q23 progesterone receptor 34239 rs11571150 PGR 5241 11 100503682 NM_000926 NP_000917 G/T A444S minus 16343365 693 EGP_SNPS PDR90 NIHPDR 170 0.02 120 by freq 11q22-q23 progesterone receptor 34240 rs11571707 BRCA2 675 13 31828598 NM_000059 NP_000050 C/T I2490T plus 16355882 693 EGP_SNPS PDR90 NIHPDR 168 0.04 120 by freq 13q12.3 "breast cancer 2, early onset" 34241 rs11571746 BRCA2 675 13 31843108 NM_000059 NP_000050 C/T S2835P plus 16355930 693 EGP_SNPS PDR90 NIHPDR 162 0.01 120 by freq 13q12.3 "breast cancer 2, early onset" 34242 rs11571769 BRCA2 675 13 31851550 NM_000059 NP_000050 A/G A2951T plus 16355965 693 EGP_SNPS PDR90 NIHPDR 168 0.01 120 by freq 13q12.3 "breast cancer 2, early onset" 34243 rs11572080 CYP2C8 1558 10 96817020 NM_000770 NP_000761 A/G R139K minus 16356374 693 EGP_SNPS PDR90 NIHPDR 180 0.05 120 by freq 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34244 rs11572080 CYP2C8 1558 10 96817020 NM_030878 NP_110518 A/G R139K minus 16356374 693 EGP_SNPS PDR90 NIHPDR 180 0.05 120 by freq 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34245 rs11572103 CYP2C8 1558 10 96808096 NM_000770 NP_000761 A/T I269F minus 16356405 693 EGP_SNPS PDR90 NIHPDR 178 0.03 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34246 rs11572103 CYP2C8 1558 10 96808096 NM_000770 NP_000761 A/T I269F minus 23587550 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34247 rs11572103 CYP2C8 1558 10 96808096 NM_000770 NP_000761 A/T I269F minus 23587550 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34248 rs11572103 CYP2C8 1558 10 96808096 NM_000770 NP_000761 A/T I269F minus 23587550 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34249 rs11572103 CYP2C8 1558 10 96808096 NM_030878 NP_110518 A/T I269F minus 16356405 693 EGP_SNPS PDR90 NIHPDR 178 0.03 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34250 rs11572103 CYP2C8 1558 10 96808096 NM_030878 NP_110518 A/T I269F minus 23587550 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34251 rs11572103 CYP2C8 1558 10 96808096 NM_030878 NP_110518 A/T I269F minus 23587550 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34252 rs11572103 CYP2C8 1558 10 96808096 NM_030878 NP_110518 A/T I269F minus 23587550 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "by cluster,freq" 10q24.1 "cytochrome P450, family 2, subfamily C, polypeptide 8" 34253 rs11572243 CYP2J2 1573 1 60093633 NM_000775 NP_000766 A/G N124S minus 16356586 693 EGP_SNPS PDR90 NIHPDR 166 0.01 120 by freq 1p31.3-p31.2 "cytochrome P450, family 2, subfamily J, polypeptide 2" 34254 rs11573021 IGFBP7 3490 4 57817415 NM_001553 NP_001544 C/T L11F minus 16357740 693 EGP_SNPS PDR90 NIHPDR 176 0.07 120 by freq 4q12 insulin-like growth factor binding protein 7 34255 rs11573162 PLA2G2A 5320 1 20050309 NM_000300 NP_000291 C/T H19Y minus 16357935 693 EGP_SNPS PDR90 NIHPDR 174 0.01 123 "by cluster,freq" 1p35 "phospholipase A2, group IIA (platelets, synovial fluid)" 34256 rs11573162 PLA2G2A 5320 1 20050309 NM_000300 NP_000291 C/T H19Y minus 23842032 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p35 "phospholipase A2, group IIA (platelets, synovial fluid)" 34257 rs11573162 PLA2G2A 5320 1 20050309 NM_000300 NP_000291 C/T H19Y minus 23842032 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p35 "phospholipase A2, group IIA (platelets, synovial fluid)" 34258 rs11573162 PLA2G2A 5320 1 20050309 NM_000300 NP_000291 C/T H19Y minus 23842032 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 1p35 "phospholipase A2, group IIA (platelets, synovial fluid)" 34259 rs11573578 PTCH2 8643 1 44964426 NM_003738 NP_003729 C/G E346Q minus 16358464 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 by freq 1p33-p34 patched homolog 2 (Drosophila) 34260 rs11573590 PTCH2 8643 1 44961266 NM_003738 NP_003729 C/T T988M minus 16358481 693 EGP_SNPS PDR90 NIHPDR 166 0.05 123 "by cluster,freq" 1p33-p34 patched homolog 2 (Drosophila) 34261 rs11573590 PTCH2 8643 1 44961266 NM_003738 NP_003729 C/T T988M minus 23840500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1p33-p34 patched homolog 2 (Drosophila) 34262 rs11573590 PTCH2 8643 1 44961266 NM_003738 NP_003729 C/T T988M minus 23840500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p33-p34 patched homolog 2 (Drosophila) 34263 rs11573590 PTCH2 8643 1 44961266 NM_003738 NP_003729 C/T T988M minus 23840500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by cluster,freq" 1p33-p34 patched homolog 2 (Drosophila) 34264 rs11573986 TNFRSF14 8764 1 2524597 NM_003820 NP_003811 A/G G174E minus 16359070 693 EGP_SNPS PDR90 NIHPDR 176 0.01 120 by freq 1p36.3-p36.2 "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)" 34265 rs11574151 PURG 29942 8 31009119 NM_013357 NP_037489 G/T E241A plus 16359291 693 EGP_SNPS PDR90 NIHPDR 180 0.02 120 by freq 8p11 purine-rich element binding protein G 34266 rs11574153 PURG 29942 8 31009765 NM_013357 NP_037489 C/T S26G plus 16359293 693 EGP_SNPS PDR90 NIHPDR 176 0.05 120 by freq 8p11 purine-rich element binding protein G 34267 rs11574395 WRN 7486 8 31144112 NM_000553 NP_000544 A/G V1339I plus 16359636 693 EGP_SNPS PDR90 NIHPDR 180 0.01 120 by freq 8p12-p11.2 Werner syndrome 34268 rs11574477 B7H3 80381 15 71781979 NM_025240 NP_079516 A/T Q137L plus 16359798 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 15q23-q24 B7 homolog 3 34269 rs11574527 BIK 638 22 41849769 NM_001197 NP_001188 C/T L148P plus 16359911 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 22q13.31 BCL2-interacting killer (apoptosis-inducing) 34270 rs11574542 ITGB7 3695 12 51872856 NM_000889 NP_000880 A/G G611E minus 16359937 649 FHCRC POPU1 USA (20) 3 0.03 120 by freq 12q13.13 "integrin, beta 7" 34271 rs11574542 ITGB7 3695 12 51872856 NM_000889 NP_000880 A/G G611E minus 16359937 649 FHCRC POPU1 USA (20) 39 0.05 120 by freq 12q13.13 "integrin, beta 7" 34272 rs11574570 LILRB4 11006 19 59866821 NM_006847 NP_006838 G/T R18S plus 16359978 649 FHCRC POPU1 USA (20) 40 0.13 120 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 34273 rs11574575 LILRB4 11006 19 59869960 NM_006847 NP_006838 A/G C330Y plus 16359995 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 34274 rs11574576 LILRB4 11006 19 59869974 NM_006847 NP_006838 A/G N335D plus 16359996 649 FHCRC POPU1 USA (20) 40 0.25 120 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 34275 rs11574589 LILRB4 11006 19 59870941 NM_006847 NP_006838 A/C K362T plus 16360013 649 FHCRC POPU1 USA (20) 40 0.08 120 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4" 34276 rs11574606 LILRA3 11026 19 59495979 NM_006865 NP_006856 C/T P3S minus 16360032 649 FHCRC POPU1 USA (20) 40 0.13 120 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3" 34277 rs11574633 ITGAX 3687 16 31274819 NM_000887 NP_000878 C/T W48R plus 16360081 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 16p11.2 "integrin, alpha X (antigen CD11C (p150), alpha polypeptide)" 34278 rs11574696 CASP6 839 4 110976511 NM_001226 NP_001217 A/C A34E minus 16360208 649 FHCRC POPU1 USA (20) 40 0.05 120 by freq 4q25 "caspase 6, apoptosis-related cysteine protease" 34279 rs11574697 CASP6 839 4 110976509 NM_001226 NP_001217 A/G E35K minus 16360209 649 FHCRC POPU1 USA (20) 40 0.2 120 by freq 4q25 "caspase 6, apoptosis-related cysteine protease" 34280 rs11574885 NOTCH1 4851 9 136689080 NM_017617 NP_060087 A/G Q300R minus 16360541 649 FHCRC POPU1 USA (20) 40 0.2 120 by freq 9q34.3 "Notch homolog 1, translocation-associated (Drosophila)" 34281 rs11575194 IGFBP5 3488 2 217369234 NM_000599 NP_000590 C/T R138W minus 16361166 693 EGP_SNPS PDR90 NIHPDR 174 0.03 120 by freq 2q33-q36 insulin-like growth factor binding protein 5 34282 rs11575216 APOF 319 12 55041724 NM_001638 NP_001629 C/G A178G minus 16361194 693 EGP_SNPS PDR90 NIHPDR 178 0.01 120 by freq 12q13.13 apolipoprotein F 34283 rs11575245 STAT2 6773 12 55023518 NM_005419 NP_005410 G/T Q826H minus 16361239 693 EGP_SNPS PDR90 NIHPDR 178 0.02 120 by freq 12q13.13 "signal transducer and activator of transcription 2, 113kDa" 34284 rs11575542 DDC 1644 7 50305196 NM_000790 NP_000781 A/G R462Q minus 16361539 693 EGP_SNPS PDR90 NIHPDR 178 0.06 120 by freq 7p11 dopa decarboxylase (aromatic L-amino acid decarboxylase) 34285 rs11575584 CCL27 10850 9 34651994 NM_006664 NP_006655 A/G L96F plus 16361587 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 46 0.02 120 by freq 9p13 chemokine (C-C motif) ligand 27 34286 rs11575584 CCL27 10850 9 34651994 NM_006664 NP_006655 A/G L96F plus 16361587 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.11 120 by freq 9p13 chemokine (C-C motif) ligand 27 34287 rs11575594 CCL27 10850 9 34652048 NM_006664 NP_006655 C/T I78V plus 16361603 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.21 120 by freq 9p13 chemokine (C-C motif) ligand 27 34288 rs11575610 ITGA8 8516 10 15801907 XM_167711 XP_167711 A/G H87R minus 16361731 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.07 120 by freq 10p13 "integrin, alpha 8" 34289 rs11575688 HABP2 3026 10 115333047 NM_004132 NP_004123 C/G E393Q plus 16362045 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.04 120 by freq 10q26.11 hyaluronan binding protein 2 34290 rs11575797 NRAP 4892 10 115340356 NM_006175 NP_006166 A/C A1608S plus 16362201 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 120 by freq 10q24-q26 nebulin-related anchoring protein 34291 rs11575797 NRAP 4892 10 115340356 NM_198060 NP_932326 A/C A1643S plus 16362201 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.08 120 by freq 10q24-q26 nebulin-related anchoring protein 34292 rs11575840 NCR3 259197 6 31665619 NM_147130 NP_667341 A/G A103T minus 24359473 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 6p21.3 natural cytotoxicity triggering receptor 3 34293 rs11575840 NCR3 259197 6 31665619 NM_147130 NP_667341 A/G A103T minus 24359473 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6p21.3 natural cytotoxicity triggering receptor 3 34294 rs11575840 NCR3 259197 6 31665619 NM_147130 NP_667341 A/G A103T minus 24359473 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 6p21.3 natural cytotoxicity triggering receptor 3 34295 rs11575948 PCDHGA3 56112 5 140704244 NM_018916 NP_061739 A/C I154L plus 23740706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34296 rs11575948 PCDHGA3 56112 5 140704244 NM_018916 NP_061739 A/C I154L plus 23740706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34297 rs11575948 PCDHGA3 56112 5 140704244 NM_018916 NP_061739 A/C I154L plus 23740706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34298 rs11575948 PCDHGA3 56112 5 140704244 NM_032011 NP_114400 A/C I154L plus 23740706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34299 rs11575948 PCDHGA3 56112 5 140704244 NM_032011 NP_114400 A/C I154L plus 23740706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34300 rs11575948 PCDHGA3 56112 5 140704244 NM_032011 NP_114400 A/C I154L plus 23740706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 3" 34301 rs11575951 PCDHGA4 56111 5 140716998 NM_018917 NP_061740 C/G D683H plus 23740724 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34302 rs11575951 PCDHGA4 56111 5 140716998 NM_018917 NP_061740 C/G D683H plus 23740724 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34303 rs11575951 PCDHGA4 56111 5 140716998 NM_018917 NP_061740 C/G D683H plus 23740724 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34304 rs11575951 PCDHGA4 56111 5 140716998 NM_032053 NP_114442 C/G D683H plus 23740724 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34305 rs11575951 PCDHGA4 56111 5 140716998 NM_032053 NP_114442 C/G D683H plus 23740724 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34306 rs11575951 PCDHGA4 56111 5 140716998 NM_032053 NP_114442 C/G D683H plus 23740724 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 5q31 "protocadherin gamma subfamily A, 4" 34307 rs11577731 ZNF364 27246 1 143173635 NM_014455 NP_055270 A/G G194R plus 16392700 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 HapMap 1q21.2 zinc finger protein 364 34308 rs11581921 LEPRE1 64175 1 42885023 NM_022356 NP_071751 C/T M549I plus 16413789 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 123 "HapMap,doubleHit,freq,cluster" 1p34.1 leucine proline-enriched proteoglycan (leprecan) 1 34309 rs11582663 IRTA1 83417 1 154372195 NM_031282 NP_112572 C/T R60Q plus 16417641 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.18 120 "HapMap,freq" 1q21 immunoglobulin superfamily receptor translocation associated 1 34310 rs11591147 PCSK9 255738 1 55217668 NM_174936 NP_777596 G/T R46L plus 16462206 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 121 "HapMap,doubleHit,cluster" 1p32.3 proprotein convertase subtilisin/kexin type 9 34311 rs11598233 SCD 6319 10 102106301 NM_005063 NP_005054 A/C M224L plus 23492118 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 10q23-q24 stearoyl-CoA desaturase (delta-9-desaturase) 34312 rs11598233 SCD 6319 10 102106301 NM_005063 NP_005054 A/C M224L plus 23492118 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 10q23-q24 stearoyl-CoA desaturase (delta-9-desaturase) 34313 rs11598233 SCD 6319 10 102106301 NM_005063 NP_005054 A/C M224L plus 23492118 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 10q23-q24 stearoyl-CoA desaturase (delta-9-desaturase) 34314 rs11599164 ANK3 288 10 61501990 NM_020987 NP_066267 G/T H2885Q plus 24510408 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 34315 rs11599164 ANK3 288 10 61501990 NM_020987 NP_066267 G/T H2885Q plus 24510408 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 34316 rs11599164 ANK3 288 10 61501990 NM_020987 NP_066267 G/T H2885Q plus 24510408 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q21 "ankyrin 3, node of Ranvier (ankyrin G)" 34317 rs11601425 TMPRSS5 80975 11 113075595 NM_030770 NP_110397 C/T R46Q plus 24567656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 11q "transmembrane protease, serine 5 (spinesin)" 34318 rs11601425 TMPRSS5 80975 11 113075595 NM_030770 NP_110397 C/T R46Q plus 24567656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q "transmembrane protease, serine 5 (spinesin)" 34319 rs11601425 TMPRSS5 80975 11 113075595 NM_030770 NP_110397 C/T R46Q plus 24567656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q "transmembrane protease, serine 5 (spinesin)" 34320 rs11602499 OR51S1 119692 11 4826837 XM_061624 XP_061624 C/G Q60E plus 24526620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.45 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily S, member 1" 34321 rs11602499 OR51S1 119692 11 4826837 XM_061624 XP_061624 C/G Q60E plus 24526620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily S, member 1" 34322 rs11602499 OR51S1 119692 11 4826837 XM_061624 XP_061624 C/G Q60E plus 24526620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 "by doubleHit,freq,cluster" 11p15.4 "olfactory receptor, family 51, subfamily S, member 1" 34323 rs11604561 PIK3C2A 5286 11 17075263 NM_002645 NP_002636 C/T T1415A plus 16537813 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 123 "HapMap,freq" 11p15.5-p14 "phosphoinositide-3-kinase, class 2, alpha polypeptide" 34324 rs11604561 PIK3C2A 5286 11 17075263 NM_002645 NP_002636 C/T T1415A plus 24472154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "HapMap,freq" 11p15.5-p14 "phosphoinositide-3-kinase, class 2, alpha polypeptide" 34325 rs11604561 PIK3C2A 5286 11 17075263 NM_002645 NP_002636 C/T T1415A plus 24472154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "HapMap,freq" 11p15.5-p14 "phosphoinositide-3-kinase, class 2, alpha polypeptide" 34326 rs11604561 PIK3C2A 5286 11 17075263 NM_002645 NP_002636 C/T T1415A plus 24472154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 "HapMap,freq" 11p15.5-p14 "phosphoinositide-3-kinase, class 2, alpha polypeptide" 34327 rs11604671 ANKK1 255239 11 112773269 NM_178510 NP_848605 A/G G318R plus 24566321 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 34328 rs11604671 ANKK1 255239 11 112773269 NM_178510 NP_848605 A/G G318R plus 24566321 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 34329 rs11604671 ANKK1 255239 11 112773269 NM_178510 NP_848605 A/G G318R plus 24566321 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 "by doubleHit,freq,cluster" 11q23.2 ankyrin repeat and kinase domain containing 1 34330 rs11604985 SSH3 54961 11 66831600 NM_017857 NP_060327 A/G T203A plus 16540051 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q13.1 slingshot homolog 3 (Drosophila) 34331 rs11604985 SSH3 54961 11 66831600 NM_018276 NP_060746 A/G T203A plus 16540051 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q13.1 slingshot homolog 3 (Drosophila) 34332 rs11617392 LRCH1 23143 13 46177259 NM_015116 NP_055931 G/T A486S plus 24430352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 13q14.11 leucine-rich repeats and calponin homology (CH) domain containing 1 34333 rs11617392 LRCH1 23143 13 46177259 NM_015116 NP_055931 G/T A486S plus 24430352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 13q14.11 leucine-rich repeats and calponin homology (CH) domain containing 1 34334 rs11617392 LRCH1 23143 13 46177259 NM_015116 NP_055931 G/T A486S plus 24430352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q14.11 leucine-rich repeats and calponin homology (CH) domain containing 1 34335 rs11635172 76P 27229 15 41465332 NM_014444 NP_055259 C/G L259V plus 16681009 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 15q15 gamma tubulin ring complex protein (76p gene) 34336 rs11638390 USP8 9101 15 48569995 NM_005154 NP_005145 A/G T739A plus 24665708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq" 15q15.3 ubiquitin specific protease 8 34337 rs11638390 USP8 9101 15 48569995 NM_005154 NP_005145 A/G T739A plus 24665708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq" 15q15.3 ubiquitin specific protease 8 34338 rs11638390 USP8 9101 15 48569995 NM_005154 NP_005145 A/G T739A plus 24665708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 15q15.3 ubiquitin specific protease 8 34339 rs11640138 TNP2 7142 16 11270230 NM_005425 NP_005416 A/G R131W plus 24511983 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.48 123 "by doubleHit,freq,cluster" 16p13.13 transition protein 2 (during histone to protamine replacement) 34340 rs11640138 TNP2 7142 16 11270230 NM_005425 NP_005416 A/G R131W plus 24511983 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.33 123 "by doubleHit,freq,cluster" 16p13.13 transition protein 2 (during histone to protamine replacement) 34341 rs11640138 TNP2 7142 16 11270230 NM_005425 NP_005416 A/G R131W plus 24511983 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 "by doubleHit,freq,cluster" 16p13.13 transition protein 2 (during histone to protamine replacement) 34342 rs11640590 FOXC2 2303 16 85159945 NM_005251 NP_005242 A/C Y501X plus 16698901 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 16q22-16q24 "forkhead box C2 (MFH-1, mesenchyme forkhead 1)" 34343 rs11640794 ZNF469 84627 16 87022477 XM_040592 XP_040592 A/C R366S plus 16699551 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 121 "HapMap,doubleHit,freq,cluster" 16q24 zinc finger protein 469 34344 rs11643211 ADAMTS18 170692 16 75959046 NM_139054 NP_620685 A/G Y191H plus 24193157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34345 rs11643211 ADAMTS18 170692 16 75959046 NM_139054 NP_620685 A/G Y191H plus 24193157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34346 rs11643211 ADAMTS18 170692 16 75959046 NM_139054 NP_620685 A/G Y191H plus 24193157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34347 rs11643211 ADAMTS18 170692 16 75959046 NM_199355 NP_955387 A/G Y191H plus 24193157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34348 rs11643211 ADAMTS18 170692 16 75959046 NM_199355 NP_955387 A/G Y191H plus 24193157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34349 rs11643211 ADAMTS18 170692 16 75959046 NM_199355 NP_955387 A/G Y191H plus 24193157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 by freq 16q23 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18" 34350 rs11643314 HIRIP3 8479 16 29912139 NM_003609 NP_003600 A/C G521W plus 16708250 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 16p12.1 HIRA interacting protein 3 34351 rs11643718 SLC12A3 6559 16 55491020 NM_000339 NP_000330 A/G R913Q plus 24432346 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34352 rs11643718 SLC12A3 6559 16 55491020 NM_000339 NP_000330 A/G R913Q plus 24432346 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34353 rs11643718 SLC12A3 6559 16 55491020 NM_000339 NP_000330 A/G R913Q plus 24432346 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34354 rs11646443 KCNG4 93107 16 82827977 NM_133490 NP_597997 A/G R206W plus 24499451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34355 rs11646443 KCNG4 93107 16 82827977 NM_133490 NP_597997 A/G R206W plus 24499451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34356 rs11646443 KCNG4 93107 16 82827977 NM_133490 NP_597997 A/G R206W plus 24499451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34357 rs11646443 KCNG4 93107 16 82827977 NM_172347 NP_758857 A/G R206W plus 24499451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34358 rs11646443 KCNG4 93107 16 82827977 NM_172347 NP_758857 A/G R206W plus 24499451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34359 rs11646443 KCNG4 93107 16 82827977 NM_172347 NP_758857 A/G R206W plus 24499451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 34360 rs11649804 RAI1 10743 17 17637480 NM_030665 NP_109590 A/C P165T plus 23643814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 17p11.2 retinoic acid induced 1 34361 rs11649804 RAI1 10743 17 17637480 NM_030665 NP_109590 A/C P165T plus 23643814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.43 123 "by cluster,freq" 17p11.2 retinoic acid induced 1 34362 rs11649804 RAI1 10743 17 17637480 NM_030665 NP_109590 A/C P165T plus 23643814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by cluster,freq" 17p11.2 retinoic acid induced 1 34363 rs11651405 HELZ 9931 17 62533757 XM_375485 XP_375485 C/T S1744N plus 16735869 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 17q24.3 helicase with zinc finger domain 34364 rs11651595 NALP1 22861 17 5404003 NM_014922 NP_055737 C/G T246S plus 16736434 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,freq" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 34365 rs11651595 NALP1 22861 17 5404003 NM_033004 NP_127497 C/G T246S plus 16736434 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,freq" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 34366 rs11651595 NALP1 22861 17 5404003 NM_033006 NP_127499 C/G T246S plus 16736434 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,freq" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 34367 rs11651595 NALP1 22861 17 5404003 NM_033007 NP_127500 C/G T246S plus 16736434 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.07 120 "HapMap,freq" 17p13 "NACHT, leucine rich repeat and PYD containing 1" 34368 rs11652709 EPX 8288 17 53626093 NM_000502 NP_000493 C/G Q122H plus 24704221 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 17q23.1 eosinophil peroxidase 34369 rs11652709 EPX 8288 17 53626093 NM_000502 NP_000493 C/G Q122H plus 24704221 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 17q23.1 eosinophil peroxidase 34370 rs11652709 EPX 8288 17 53626093 NM_000502 NP_000493 C/G Q122H plus 24704221 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 17q23.1 eosinophil peroxidase 34371 rs11653020 HELZ 9931 17 62535205 XM_375485 XP_375485 A/G A1530V plus 24593875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 17q24.3 helicase with zinc finger domain 34372 rs11653020 HELZ 9931 17 62535205 XM_375485 XP_375485 A/G A1530V plus 24593875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 17q24.3 helicase with zinc finger domain 34373 rs11653020 HELZ 9931 17 62535205 XM_375485 XP_375485 A/G A1530V plus 24593875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17q24.3 helicase with zinc finger domain 34374 rs11653658 DHX33 56919 17 5294928 NM_020162 NP_064547 C/G H483D plus 16743193 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 123 "HapMap,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 34375 rs11653658 DHX33 56919 17 5294928 NM_020162 NP_064547 C/G H483D plus 23625727 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "HapMap,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 34376 rs11653658 DHX33 56919 17 5294928 NM_020162 NP_064547 C/G H483D plus 23625727 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "HapMap,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 34377 rs11653658 DHX33 56919 17 5294928 NM_020162 NP_064547 C/G H483D plus 23625727 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "HapMap,freq,cluster" 17p13.3 DEAH (Asp-Glu-Ala-His) box polypeptide 33 34378 rs11656816 TOP2A 7153 17 35814654 NM_001067 NP_001058 A/C S654I plus 16753649 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 17q21-q22 topoisomerase (DNA) II alpha 170kDa 34379 rs11658876 PHB 5245 17 44845577 NM_002634 NP_002625 A/C A17S plus 16760576 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 17q21 prohibitin 34380 rs11662595 HRH4 59340 18 20310968 NM_021624 NP_067637 A/G H206R plus 24710559 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 18q11.2 histamine receptor H4 34381 rs11662595 HRH4 59340 18 20310968 NM_021624 NP_067637 A/G H206R plus 24710559 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q11.2 histamine receptor H4 34382 rs11662595 HRH4 59340 18 20310968 NM_021624 NP_067637 A/G H206R plus 24710559 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q11.2 histamine receptor H4 34383 rs11665084 HRH4 59340 18 20310764 NM_021624 NP_067637 C/T A138V plus 24710558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 18q11.2 histamine receptor H4 34384 rs11665084 HRH4 59340 18 20310764 NM_021624 NP_067637 C/T A138V plus 24710558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 18q11.2 histamine receptor H4 34385 rs11665084 HRH4 59340 18 20310764 NM_021624 NP_067637 C/T A138V plus 24710558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q11.2 histamine receptor H4 34386 rs11666267 BCNP1 199786 19 17521300 NM_173544 NP_775815 A/G G603S plus 24684336 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 by freq 19p13.12 B-cell novel protein 1 34387 rs11666267 BCNP1 199786 19 17521300 NM_173544 NP_775815 A/G G603S plus 24684336 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.33 123 by freq 19p13.12 B-cell novel protein 1 34388 rs11666267 BCNP1 199786 19 17521300 NM_173544 NP_775815 A/G G603S plus 24684336 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.3 123 by freq 19p13.12 B-cell novel protein 1 34389 rs11666699 ZNF585B 92285 19 42372456 NM_152279 NP_689492 G/T Q80P plus 16789046 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.13 zinc finger protein 585B 34390 rs11666735 FCAR 2204 19 60088725 NM_002000 NP_001991 A/G D113N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34391 rs11666735 FCAR 2204 19 60088725 NM_002000 NP_001991 A/G D113N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34392 rs11666735 FCAR 2204 19 60088725 NM_002000 NP_001991 A/G D113N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34393 rs11666735 FCAR 2204 19 60088725 NM_133269 NP_579803 A/G D113N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34394 rs11666735 FCAR 2204 19 60088725 NM_133269 NP_579803 A/G D113N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34395 rs11666735 FCAR 2204 19 60088725 NM_133269 NP_579803 A/G D113N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34396 rs11666735 FCAR 2204 19 60088725 NM_133271 NP_579805 A/G D113N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34397 rs11666735 FCAR 2204 19 60088725 NM_133271 NP_579805 A/G D113N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34398 rs11666735 FCAR 2204 19 60088725 NM_133271 NP_579805 A/G D113N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34399 rs11666735 FCAR 2204 19 60088725 NM_133272 NP_579806 A/G D101N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34400 rs11666735 FCAR 2204 19 60088725 NM_133272 NP_579806 A/G D101N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34401 rs11666735 FCAR 2204 19 60088725 NM_133272 NP_579806 A/G D101N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34402 rs11666735 FCAR 2204 19 60088725 NM_133273 NP_579807 A/G D101N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34403 rs11666735 FCAR 2204 19 60088725 NM_133273 NP_579807 A/G D101N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34404 rs11666735 FCAR 2204 19 60088725 NM_133273 NP_579807 A/G D101N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34405 rs11666735 FCAR 2204 19 60088725 NM_133274 NP_579808 A/G D101N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34406 rs11666735 FCAR 2204 19 60088725 NM_133274 NP_579808 A/G D101N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34407 rs11666735 FCAR 2204 19 60088725 NM_133274 NP_579808 A/G D101N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34408 rs11666735 FCAR 2204 19 60088725 NM_133278 NP_579812 A/G D101N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34409 rs11666735 FCAR 2204 19 60088725 NM_133278 NP_579812 A/G D101N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34410 rs11666735 FCAR 2204 19 60088725 NM_133278 NP_579812 A/G D101N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34411 rs11666735 FCAR 2204 19 60088725 NM_133279 NP_579813 A/G D113N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34412 rs11666735 FCAR 2204 19 60088725 NM_133279 NP_579813 A/G D113N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34413 rs11666735 FCAR 2204 19 60088725 NM_133279 NP_579813 A/G D113N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34414 rs11666735 FCAR 2204 19 60088725 NM_133280 NP_579814 A/G D101N plus 23778446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34415 rs11666735 FCAR 2204 19 60088725 NM_133280 NP_579814 A/G D101N plus 23778446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34416 rs11666735 FCAR 2204 19 60088725 NM_133280 NP_579814 A/G D101N plus 23778446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 34417 rs11667275 LPPR2 64748 19 11334358 NM_022737 NP_073574 C/G T278S plus 24594682 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 19p13.2 lipid phosphate phosphatase-related protein type 2 34418 rs11667275 LPPR2 64748 19 11334358 NM_022737 NP_073574 C/G T278S plus 24594682 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19p13.2 lipid phosphate phosphatase-related protein type 2 34419 rs11667275 LPPR2 64748 19 11334358 NM_022737 NP_073574 C/G T278S plus 24594682 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 19p13.2 lipid phosphate phosphatase-related protein type 2 34420 rs11668239 ZNF574 64763 19 47275333 NM_022752 NP_073589 G/T Q245H plus 16793685 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.31 zinc finger protein 574 34421 rs11669576 LDLR 3949 19 11083300 NM_000527 NP_000518 A/G A391T plus 16797693 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.04 120 "HapMap,freq" 19p13.3 low density lipoprotein receptor (familial hypercholesterolemia) 34422 rs11669849 EML2 24139 19 50816670 NM_012155 NP_036287 C/G L303V plus 16798465 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.32 echinoderm microtubule associated protein like 2 34423 rs11670007 OR10H3 26532 19 15713363 NM_013938 NP_039226 A/G R54H plus 23773370 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 34424 rs11670007 OR10H3 26532 19 15713363 NM_013938 NP_039226 A/G R54H plus 23773370 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 34425 rs11670007 OR10H3 26532 19 15713363 NM_013938 NP_039226 A/G R54H plus 23773370 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 19p13.1 "olfactory receptor, family 10, subfamily H, member 3" 34426 rs11670727 NAPSA 9476 19 55554580 NM_004851 NP_004842 C/T A310T plus 16801016 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.08 120 "HapMap,freq" 19q13.33 napsin A aspartic peptidase 34427 rs11670988 HIPK4 147746 19 45578833 NM_144685 NP_653286 C/T R302Q plus 16801872 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 120 "HapMap,freq" 19q13.2 homeodomain interacting protein kinase 4 34428 rs11671752 NOVA2 4858 19 51156153 NM_002516 NP_002507 G/T T62P plus 16804085 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.3 neuro-oncological ventral antigen 2 34429 rs11672248 CRLF1 9244 19 18570582 NM_004750 NP_004741 C/T R176K plus 16805606 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19p12 cytokine receptor-like factor 1 34430 rs11692021 UGT1A7 54577 2 234373205 NM_019077 NP_061950 C/T W208R plus 16869218 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 2q37 "UDP glycosyltransferase 1 family, polypeptide A7" 34431 rs11700112 PAK7 57144 20 9495018 NM_020341 NP_065074 C/G R335P plus 24088523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34432 rs11700112 PAK7 57144 20 9495018 NM_020341 NP_065074 C/G R335P plus 24088523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34433 rs11700112 PAK7 57144 20 9495018 NM_020341 NP_065074 C/G R335P plus 24088523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34434 rs11700112 PAK7 57144 20 9495018 NM_177990 NP_817127 C/G R335P plus 24088523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34435 rs11700112 PAK7 57144 20 9495018 NM_177990 NP_817127 C/G R335P plus 24088523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34436 rs11700112 PAK7 57144 20 9495018 NM_177990 NP_817127 C/G R335P plus 24088523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 "by cluster,freq" 20p12 p21(CDKN1A)-activated kinase 7 34437 rs11710339 KNSL7 56992 3 44846509 NM_020242 NP_064627 A/T T996S plus 24370543 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 3p21.32 kinesin-like 7 34438 rs11710339 KNSL7 56992 3 44846509 NM_020242 NP_064627 A/T T996S plus 24370543 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 "by doubleHit,freq,cluster" 3p21.32 kinesin-like 7 34439 rs11710339 KNSL7 56992 3 44846509 NM_020242 NP_064627 A/T T996S plus 24370543 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3p21.32 kinesin-like 7 34440 rs11711871 CMYA1 165904 3 39203047 NM_194293 NP_919269 G/T H965P plus 16957563 885 TSC-CSHL HapMap-CEPH-30-trios 98 0.18 120 "HapMap,doubleHit,freq" 3p21.33 cardiomyopathy associated 1 34441 rs11718329 ZNF589 51385 3 48284832 NM_016089 NP_057173 C/G T213R plus 16981706 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.31 120 "HapMap,doubleHit,freq" 3p21 zinc finger protein 589 34442 rs11721758 CDHJ 54798 4 155652681 NM_017639 NP_060109 A/G V153A plus 16994122 885 TSC-CSHL HapMap-CEPH-30-trios 60 0.5 123 "HapMap,doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 34443 rs11721758 CDHJ 54798 4 155652681 NM_017639 NP_060109 A/G V153A plus 24153314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "HapMap,doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 34444 rs11721758 CDHJ 54798 4 155652681 NM_017639 NP_060109 A/G V153A plus 24153314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 "HapMap,doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 34445 rs11721758 CDHJ 54798 4 155652681 NM_017639 NP_060109 A/G V153A plus 24153314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "HapMap,doubleHit,freq,cluster" 4q31.3 protocadherin protein CDHJ 34446 rs11726117 LAK 80216 4 113710889 NM_025144 NP_079420 C/T M861T plus 23721705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 34447 rs11726117 LAK 80216 4 113710889 NM_025144 NP_079420 C/T M861T plus 23721705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 34448 rs11726117 LAK 80216 4 113710889 NM_025144 NP_079420 C/T M861T plus 23721705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 4q26 lymphocyte alpha-kinase 34449 rs11736872 WDR17 116966 4 177475793 NM_170710 NP_733828 A/G A1295T plus 17044277 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.38 123 "HapMap,doubleHit,freq,cluster" 4q34 WD repeat domain 17 34450 rs11736872 WDR17 116966 4 177475793 NM_170710 NP_733828 A/G A1295T plus 24279018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "HapMap,doubleHit,freq,cluster" 4q34 WD repeat domain 17 34451 rs11736872 WDR17 116966 4 177475793 NM_170710 NP_733828 A/G A1295T plus 24279018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "HapMap,doubleHit,freq,cluster" 4q34 WD repeat domain 17 34452 rs11736872 WDR17 116966 4 177475793 NM_170710 NP_733828 A/G A1295T plus 24279018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "HapMap,doubleHit,freq,cluster" 4q34 WD repeat domain 17 34453 rs11740179 HSD17B4 3295 5 118889612 NM_000414 NP_000405 A/G I559V plus 23306367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 34454 rs11740179 HSD17B4 3295 5 118889612 NM_000414 NP_000405 A/G I559V plus 23306367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 34455 rs11740179 HSD17B4 3295 5 118889612 NM_000414 NP_000405 A/G I559V plus 23306367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 5q21 hydroxysteroid (17-beta) dehydrogenase 4 34456 rs11749126 ADAMTS19 171019 5 129067955 NM_133638 NP_598377 A/T Y1089F plus 24380118 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 by freq 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 34457 rs11749126 ADAMTS19 171019 5 129067955 NM_133638 NP_598377 A/T Y1089F plus 24380118 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 34458 rs11749126 ADAMTS19 171019 5 129067955 NM_133638 NP_598377 A/T Y1089F plus 24380118 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q31 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19" 34459 rs11750538 MYO10 4651 5 16822273 NM_012334 NP_036466 A/G R324W plus 23742523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq,cluster" 5p15.1-p14.3 myosin X 34460 rs11750538 MYO10 4651 5 16822273 NM_012334 NP_036466 A/G R324W plus 23742523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 5p15.1-p14.3 myosin X 34461 rs11750538 MYO10 4651 5 16822273 NM_012334 NP_036466 A/G R324W plus 23742523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 5p15.1-p14.3 myosin X 34462 rs11754288 SLC17A4 10050 6 25884928 NM_005495 NP_005486 A/G A372T plus 17116343 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.47 121 "HapMap,doubleHit,freq,cluster" 6p22-p21.3 "solute carrier family 17 (sodium phosphate), member 4" 34463 rs11756977 DST 667 6 56528497 NM_015548 NP_056363 C/T R2291H plus 23774358 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34464 rs11756977 DST 667 6 56528497 NM_015548 NP_056363 C/T R2291H plus 23774358 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34465 rs11756977 DST 667 6 56528497 NM_015548 NP_056363 C/T R2291H plus 23774358 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34466 rs11756977 DST 667 6 56528497 NM_183380 NP_899236 C/T R2617H plus 23774358 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34467 rs11756977 DST 667 6 56528497 NM_183380 NP_899236 C/T R2617H plus 23774358 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34468 rs11756977 DST 667 6 56528497 NM_183380 NP_899236 C/T R2617H plus 23774358 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34469 rs11758339 DST 667 6 56435808 NM_015548 NP_056363 C/T A5042T plus 24414370 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34470 rs11758339 DST 667 6 56435808 NM_015548 NP_056363 C/T A5042T plus 24414370 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34471 rs11758339 DST 667 6 56435808 NM_015548 NP_056363 C/T A5042T plus 24414370 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34472 rs11758339 DST 667 6 56435808 NM_183380 NP_899236 C/T A5368T plus 24414370 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34473 rs11758339 DST 667 6 56435808 NM_183380 NP_899236 C/T A5368T plus 24414370 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34474 rs11758339 DST 667 6 56435808 NM_183380 NP_899236 C/T A5368T plus 24414370 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 34475 rs11765552 LMTK2 22853 7 97466766 NM_014916 NP_055731 A/T L780M plus 24454657 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 7q22.1 lemur tyrosine kinase 2 34476 rs11765552 LMTK2 22853 7 97466766 NM_014916 NP_055731 A/T L780M plus 24454657 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 7q22.1 lemur tyrosine kinase 2 34477 rs11765552 LMTK2 22853 7 97466766 NM_014916 NP_055731 A/T L780M plus 24454657 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 7q22.1 lemur tyrosine kinase 2 34478 rs11773504 B1 27241 7 33161953 NM_014451 NP_055266 A/G A455T plus 24043379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34479 rs11773504 B1 27241 7 33161953 NM_014451 NP_055266 A/G A455T plus 24043379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34480 rs11773504 B1 27241 7 33161953 NM_014451 NP_055266 A/G A455T plus 24043379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34481 rs11773504 B1 27241 7 33161953 NM_198428 NP_940820 A/G A455T plus 24043379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34482 rs11773504 B1 27241 7 33161953 NM_198428 NP_940820 A/G A455T plus 24043379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34483 rs11773504 B1 27241 7 33161953 NM_198428 NP_940820 A/G A455T plus 24043379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 7p14 parathyroid hormone-responsive B1 gene 34484 rs11799966 SARG 79098 1 203583963 NM_023938 NP_076427 A/G F514S plus 17327153 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 1q32.1 specifically androgen-regulated protein 34485 rs11800462 TNFRSF25 8718 1 6458767 NM_003790 NP_003781 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34486 rs11800462 TNFRSF25 8718 1 6458767 NM_148965 NP_683866 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34487 rs11800462 TNFRSF25 8718 1 6458767 NM_148966 NP_683867 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34488 rs11800462 TNFRSF25 8718 1 6458767 NM_148967 NP_683868 C/T D114G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34489 rs11800462 TNFRSF25 8718 1 6458767 NM_148968 NP_683869 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34490 rs11800462 TNFRSF25 8718 1 6458767 NM_148969 NP_683870 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34491 rs11800462 TNFRSF25 8718 1 6458767 NM_148971 NP_683872 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34492 rs11800462 TNFRSF25 8718 1 6458767 NM_148972 NP_683873 C/T D159G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34493 rs11800462 TNFRSF25 8718 1 6458767 NM_148973 NP_683874 C/T D114G plus 17329114 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 1p36.2 "tumor necrosis factor receptor superfamily, member 25" 34494 rs11805194 NUP133 55746 1 225938469 NM_018230 NP_060700 C/T I294V plus 24292795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 1q42.13 nucleoporin 133kDa 34495 rs11805194 NUP133 55746 1 225938469 NM_018230 NP_060700 C/T I294V plus 24292795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 1q42.13 nucleoporin 133kDa 34496 rs11805194 NUP133 55746 1 225938469 NM_018230 NP_060700 C/T I294V plus 24292795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 1q42.13 nucleoporin 133kDa 34497 rs11823842 OR52E4 390081 11 5862867 XM_372368 XP_372368 C/T F257L plus 24512127 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 34498 rs11823842 OR52E4 390081 11 5862867 XM_372368 XP_372368 C/T F257L plus 24512127 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 34499 rs11823842 OR52E4 390081 11 5862867 XM_372368 XP_372368 C/T F257L plus 24512127 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 34500 rs11825834 GIF 2694 11 59367991 NM_005142 NP_005133 C/T G65R plus 17435211 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q13 gastric intrinsic factor (vitamin B synthesis) 34501 rs11826683 DPP3 10072 11 66006474 NM_005700 NP_005691 A/G R76H plus 17438498 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q12-q13.1 dipeptidylpeptidase 3 34502 rs11826683 DPP3 10072 11 66006474 NM_130443 NP_569710 A/G R76H plus 17438498 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q12-q13.1 dipeptidylpeptidase 3 34503 rs11831360 UNQ9341 283420 12 10106921 NM_207345 NP_997228 C/G A107G plus 24209957 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12p13.31 HEEE9341 34504 rs11831360 UNQ9341 283420 12 10106921 NM_207345 NP_997228 C/G A107G plus 24209957 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 12p13.31 HEEE9341 34505 rs11831360 UNQ9341 283420 12 10106921 NM_207345 NP_997228 C/G A107G plus 24209957 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 12p13.31 HEEE9341 34506 rs11841997 GUCY1B2 2974 13 50500360 NM_004129 NP_004120 C/G M128I plus 23343593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 34507 rs11841997 GUCY1B2 2974 13 50500360 NM_004129 NP_004120 C/G M128I plus 23343593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 34508 rs11841997 GUCY1B2 2974 13 50500360 NM_004129 NP_004120 C/G M128I plus 23343593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 34509 rs11845046 MIA2 117153 14 38785952 NM_054024 NP_473365 A/G I141M plus 24112809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 14q13.2 melanoma inhibitory activity 2 34510 rs11845046 MIA2 117153 14 38785952 NM_054024 NP_473365 A/G I141M plus 24112809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 14q13.2 melanoma inhibitory activity 2 34511 rs11845046 MIA2 117153 14 38785952 NM_054024 NP_473365 A/G I141M plus 24112809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 14q13.2 melanoma inhibitory activity 2 34512 rs11845272 STRN3 29966 14 30486174 NM_014574 NP_055389 A/C S197A plus 17510871 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 14q13-q21 "striatin, calmodulin binding protein 3" 34513 rs11845640 AKAP6 9472 14 32361245 NM_004274 NP_004265 C/T A1492V plus 23586889 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 34514 rs11845640 AKAP6 9472 14 32361245 NM_004274 NP_004265 C/T A1492V plus 23586889 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.48 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 34515 rs11845640 AKAP6 9472 14 32361245 NM_004274 NP_004265 C/T A1492V plus 23586889 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 "by doubleHit,freq,cluster" 14q13.1 A kinase (PRKA) anchor protein 6 34516 rs11847087 SYNE2 23224 14 63589773 NM_015180 NP_055995 A/G N3129S plus 23647974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 34517 rs11847087 SYNE2 23224 14 63589773 NM_015180 NP_055995 A/G N3129S plus 23647974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 34518 rs11847087 SYNE2 23224 14 63589773 NM_015180 NP_055995 A/G N3129S plus 23647974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 14q23.2 "spectrin repeat containing, nuclear envelope 2" 34519 rs11852361 BLM 641 15 89127103 NM_000057 NP_000048 C/T P868L plus 17531281 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq" 15q26.1 Bloom syndrome 34520 rs11854484 SLC28A2 9153 15 43332770 NM_004212 NP_004203 C/T P22L plus 24467548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 34521 rs11854484 SLC28A2 9153 15 43332770 NM_004212 NP_004203 C/T P22L plus 24467548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 34522 rs11854484 SLC28A2 9153 15 43332770 NM_004212 NP_004203 C/T P22L plus 24467548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q15 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2" 34523 rs11855057 MESDC2 23184 15 79069199 XM_370880 XP_370880 C/G G25R plus 17539583 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 15q13 mesoderm development candidate 2 34524 rs11858113 AF15Q14 57082 15 38701469 NM_020380 NP_065113 C/T M572T plus 23494114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34525 rs11858113 AF15Q14 57082 15 38701469 NM_020380 NP_065113 C/T M572T plus 23494114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34526 rs11858113 AF15Q14 57082 15 38701469 NM_020380 NP_065113 C/T M572T plus 23494114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34527 rs11858113 AF15Q14 57082 15 38701469 NM_144508 NP_653091 C/T M572T plus 23494114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34528 rs11858113 AF15Q14 57082 15 38701469 NM_144508 NP_653091 C/T M572T plus 23494114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34529 rs11858113 AF15Q14 57082 15 38701469 NM_144508 NP_653091 C/T M572T plus 23494114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34530 rs11858113 AF15Q14 57082 15 38701469 NM_170589 NP_733468 C/T M598T plus 23494114 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34531 rs11858113 AF15Q14 57082 15 38701469 NM_170589 NP_733468 C/T M598T plus 23494114 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34532 rs11858113 AF15Q14 57082 15 38701469 NM_170589 NP_733468 C/T M598T plus 23494114 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 34533 rs11858624 PYGO1 26108 15 53625877 NM_015617 NP_056432 G/T P299H plus 24613406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by doubleHit,freq" 15q21.1 pygopus 1 34534 rs11858624 PYGO1 26108 15 53625877 NM_015617 NP_056432 G/T P299H plus 24613406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq" 15q21.1 pygopus 1 34535 rs11858624 PYGO1 26108 15 53625877 NM_015617 NP_056432 G/T P299H plus 24613406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 15q21.1 pygopus 1 34536 rs11859030 SRCAP 10847 16 30643276 NM_006662 NP_006653 A/C S1418Y plus 17551940 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 16p11.2 Snf2-related CBP activator protein 34537 rs11861251 ITGAM 3684 16 31196897 NM_000632 NP_000623 C/T M441T plus 17558438 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.15 120 "HapMap,freq" 16p11.2 "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)" 34538 rs11863893 UQCRC2 7385 16 21890437 NM_003366 NP_003357 A/G R254H plus 17565827 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 16p12 ubiquinol-cytochrome c reductase core protein II 34539 rs11864159 TMC7 79905 16 18975397 NM_024847 NP_079123 C/T T635I plus 17566595 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit,cluster" 16p13.11 transmembrane channel-like 7 34540 rs11871287 NLK 51701 17 23473827 NM_016231 NP_057315 C/T V165A plus 17589388 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 17q11.2 nemo like kinase 34541 rs11878540 ZNF493 284443 19 21397818 NM_175910 NP_787106 A/G N45D plus 17613177 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 19p13.11 zinc finger protein 493 34542 rs11879465 ZNF211 10520 19 62844607 NM_006385 NP_006376 C/T A327V plus 17615944 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 211 34543 rs11879465 ZNF211 10520 19 62844607 NM_006385 NP_006376 C/T A327V plus 24792048 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 211 34544 rs11879465 ZNF211 10520 19 62844607 NM_198855 NP_942152 C/T A314V plus 17615944 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.1 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 211 34545 rs11879465 ZNF211 10520 19 62844607 NM_198855 NP_942152 C/T A314V plus 24792048 1303 SEQUENOM CEPH CEPH (92) 184 0.18 123 "HapMap,doubleHit,freq,cluster" 19q13.4 zinc finger protein 211 34546 rs11880651 ZNF283 284349 19 49023638 XM_371174 XP_371174 C/T C229R plus 24684906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 19q13.32 zinc finger protein 283 34547 rs11880651 ZNF283 284349 19 49023638 XM_371174 XP_371174 C/T C229R plus 24684906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19q13.32 zinc finger protein 283 34548 rs11880651 ZNF283 284349 19 49023638 XM_371174 XP_371174 C/T C229R plus 24684906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 19q13.32 zinc finger protein 283 34549 rs11880771 DOCK6 57572 19 11183674 NM_020812 NP_065863 C/T E1549K plus 17619514 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19p13.2 dedicator of cytokinesis 6 34550 rs11881304 EGFL4 1954 19 47572655 NM_001410 NP_001401 A/G R2350K plus 17621042 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q12 "EGF-like-domain, multiple 4" 34551 rs11887534 ABCG8 64241 2 43977898 NM_022437 NP_071882 C/G D19H plus 24650913 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 34552 rs11887534 ABCG8 64241 2 43977898 NM_022437 NP_071882 C/G D19H plus 24650913 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 34553 rs11887534 ABCG8 64241 2 43977898 NM_022437 NP_071882 C/G D19H plus 24650913 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p21 "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)" 34554 rs11888208 SCN7A 6332 2 167138958 NM_002976 NP_002967 C/T I407V plus 23243059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 34555 rs11888208 SCN7A 6332 2 167138958 NM_002976 NP_002967 C/T I407V plus 23243059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 34556 rs11888208 SCN7A 6332 2 167138958 NM_002976 NP_002967 C/T I407V plus 23243059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q21-q23 "sodium channel, voltage-gated, type VII, alpha" 34557 rs11889528 KBTBD9 114818 2 23584593 XM_496546 XP_496546 A/G D1352N plus 23231046 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 34558 rs11889528 KBTBD9 114818 2 23584593 XM_496546 XP_496546 A/G D1352N plus 23231046 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 34559 rs11889528 KBTBD9 114818 2 23584593 XM_496546 XP_496546 A/G D1352N plus 23231046 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 "by cluster,freq" 2p24.1 kelch repeat and BTB (POZ) domain containing 9 34560 rs11896614 PRKCN 23683 2 37455195 NM_005813 NP_005804 C/T N42D plus 24648731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 2p21 "protein kinase C, nu" 34561 rs11896614 PRKCN 23683 2 37455195 NM_005813 NP_005804 C/T N42D plus 24648731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 2p21 "protein kinase C, nu" 34562 rs11896614 PRKCN 23683 2 37455195 NM_005813 NP_005804 C/T N42D plus 24648731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 2p21 "protein kinase C, nu" 34563 rs11901202 VIT 5212 2 36953090 NM_053276 NP_444506 C/T H673Y plus 17676869 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,doubleHit,freq" 2p22-p21 vitrin 34564 rs11903403 CPO 130749 2 207649890 NM_173077 NP_775100 G/T S134R plus 24173183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.43 123 "by doubleHit,freq" 2q34 carboxypeptidase O 34565 rs11903403 CPO 130749 2 207649890 NM_173077 NP_775100 G/T S134R plus 24173183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by doubleHit,freq" 2q34 carboxypeptidase O 34566 rs11903403 CPO 130749 2 207649890 NM_173077 NP_775100 G/T S134R plus 24173183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by doubleHit,freq" 2q34 carboxypeptidase O 34567 rs11908296 DDX27 55661 20 47275067 NM_017895 NP_060365 G/T G206V plus 24792661 1303 SEQUENOM CEPH CEPH (92) 184 0.26 123 "by doubleHit,cluster" 20q13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 34568 rs11908823 SON 6651 21 33846015 NM_003103 NP_003094 A/G T830A plus 17703196 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 HapMap 21q22.11 SON DNA binding protein 34569 rs11908823 SON 6651 21 33846015 NM_032195 NP_115571 A/G T870A plus 17703196 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 HapMap 21q22.11 SON DNA binding protein 34570 rs11908823 SON 6651 21 33846015 NM_058183 NP_478063 A/G T870A plus 17703196 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 HapMap 21q22.11 SON DNA binding protein 34571 rs11908823 SON 6651 21 33846015 NM_138926 NP_620304 A/G T870A plus 17703196 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 HapMap 21q22.11 SON DNA binding protein 34572 rs11908823 SON 6651 21 33846015 NM_138927 NP_620305 A/G T870A plus 17703196 885 TSC-CSHL HapMap-CEPH-30-trios 116 1 120 HapMap 21q22.11 SON DNA binding protein 34573 rs11929241 PLA1A 51365 3 120799518 NM_015900 NP_056984 G/T S23I plus 23293965 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3q13.13-q13.2 phospholipase A1 member A 34574 rs11929241 PLA1A 51365 3 120799518 NM_015900 NP_056984 G/T S23I plus 23293965 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 3q13.13-q13.2 phospholipase A1 member A 34575 rs11929241 PLA1A 51365 3 120799518 NM_015900 NP_056984 G/T S23I plus 23293965 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3q13.13-q13.2 phospholipase A1 member A 34576 rs11934749 CORIN 10699 4 47507992 NM_006587 NP_006578 C/T H525R plus 24658457 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq,cluster" 4p13-p12 "corin, serine protease" 34577 rs11934749 CORIN 10699 4 47507992 NM_006587 NP_006578 C/T H525R plus 24658457 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by doubleHit,freq,cluster" 4p13-p12 "corin, serine protease" 34578 rs11934749 CORIN 10699 4 47507992 NM_006587 NP_006578 C/T H525R plus 24658457 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 4p13-p12 "corin, serine protease" 34579 rs11954652 DCTN4 51164 5 150078076 NM_016221 NP_057305 C/G F342L plus 17848436 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.05 123 "HapMap,doubleHit,freq,cluster" 5q31-q32 dynactin 4 (p62) 34580 rs11954652 DCTN4 51164 5 150078076 NM_016221 NP_057305 C/G F342L plus 23765666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 "HapMap,doubleHit,freq,cluster" 5q31-q32 dynactin 4 (p62) 34581 rs11954652 DCTN4 51164 5 150078076 NM_016221 NP_057305 C/G F342L plus 23765666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "HapMap,doubleHit,freq,cluster" 5q31-q32 dynactin 4 (p62) 34582 rs11954652 DCTN4 51164 5 150078076 NM_016221 NP_057305 C/G F342L plus 23765666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "HapMap,doubleHit,freq,cluster" 5q31-q32 dynactin 4 (p62) 34583 rs11959820 PPARGC1B 133522 5 149192703 NM_133263 NP_573570 A/C R292S plus 23726964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 34584 rs11959820 PPARGC1B 133522 5 149192703 NM_133263 NP_573570 A/C R292S plus 23726964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 34585 rs11959820 PPARGC1B 133522 5 149192703 NM_133263 NP_573570 A/C R292S plus 23726964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 34586 rs11961225 POPDC3 64208 6 105716161 NM_022361 NP_071756 C/T R106Q plus 23320990 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6q21 popeye domain containing 3 34587 rs11961225 POPDC3 64208 6 105716161 NM_022361 NP_071756 C/T R106Q plus 23320990 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6q21 popeye domain containing 3 34588 rs11961225 POPDC3 64208 6 105716161 NM_022361 NP_071756 C/T R106Q plus 23320990 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q21 popeye domain containing 3 34589 rs11976480 AOAH 313 7 36536912 NM_001637 NP_001628 C/T D28N plus 24005338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 34590 rs11976480 AOAH 313 7 36536912 NM_001637 NP_001628 C/T D28N plus 24005338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by doubleHit,freq,cluster" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 34591 rs11976480 AOAH 313 7 36536912 NM_001637 NP_001628 C/T D28N plus 24005338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 7p14-p12 acyloxyacyl hydrolase (neutrophil) 34592 rs11993776 ZFPM2 23414 8 106882694 NM_012082 NP_036214 C/G A403G plus 23545420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by doubleHit,freq,cluster" 8q23 "zinc finger protein, multitype 2" 34593 rs11993776 ZFPM2 23414 8 106882694 NM_012082 NP_036214 C/G A403G plus 23545420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 8q23 "zinc finger protein, multitype 2" 34594 rs11993776 ZFPM2 23414 8 106882694 NM_012082 NP_036214 C/G A403G plus 23545420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 8q23 "zinc finger protein, multitype 2" 34595 rs12001918 KIF27 55582 9 83748350 NM_017576 NP_060046 C/T I213V plus 24079107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 9q22.1 kinesin family member 27 34596 rs12001918 KIF27 55582 9 83748350 NM_017576 NP_060046 C/T I213V plus 24079107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 9q22.1 kinesin family member 27 34597 rs12001918 KIF27 55582 9 83748350 NM_017576 NP_060046 C/T I213V plus 24079107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 9q22.1 kinesin family member 27 34598 rs12021720 DBT 1629 1 100384081 NM_001918 NP_001909 C/T S384G plus 18070104 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.08 121 "HapMap,doubleHit,freq" 1p31 dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex; maple syrup urine disease) 34599 rs12022378 DCLRE1B 64858 1 114160431 NM_022836 NP_073747 C/T H61Y plus 23851621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.19 123 "by cluster,freq" 1p13.1 "DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)" 34600 rs12022378 DCLRE1B 64858 1 114160431 NM_022836 NP_073747 C/T H61Y plus 23851621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 1p13.1 "DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)" 34601 rs12022378 DCLRE1B 64858 1 114160431 NM_022836 NP_073747 C/T H61Y plus 23851621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 1p13.1 "DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)" 34602 rs12026290 PHC2 1912 1 33489227 NM_198040 NP_932157 C/T V475M plus 24256743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq" 1p34.3 polyhomeotic-like 2 (Drosophila) 34603 rs12026290 PHC2 1912 1 33489227 NM_198040 NP_932157 C/T V475M plus 24256743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by doubleHit,freq" 1p34.3 polyhomeotic-like 2 (Drosophila) 34604 rs12026290 PHC2 1912 1 33489227 NM_198040 NP_932157 C/T V475M plus 24256743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq" 1p34.3 polyhomeotic-like 2 (Drosophila) 34605 rs12036228 IRTA2 83416 1 154327164 NM_031281 NP_112571 C/T V269I plus 18097748 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.25 121 "HapMap,doubleHit,freq" 1q21 immunoglobulin superfamily receptor translocation associated 2 34606 rs12038198 CGN 57530 1 148310275 NM_020770 NP_065821 A/G R485Q plus 23864934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 1q21 cingulin 34607 rs12038198 CGN 57530 1 148310275 NM_020770 NP_065821 A/G R485Q plus 23864934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q21 cingulin 34608 rs12038198 CGN 57530 1 148310275 NM_020770 NP_065821 A/G R485Q plus 23864934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 1q21 cingulin 34609 rs12040910 RGPR 89866 1 174661644 NM_033127 NP_149118 C/T H292R plus 23686125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 1q24.3 regucalcin gene promotor region related protein 34610 rs12040910 RGPR 89866 1 174661644 NM_033127 NP_149118 C/T H292R plus 23686125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 1q24.3 regucalcin gene promotor region related protein 34611 rs12040910 RGPR 89866 1 174661644 NM_033127 NP_149118 C/T H292R plus 23686125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1q24.3 regucalcin gene promotor region related protein 34612 rs12069239 FBXO42 54455 1 16323214 XM_048774 XP_048774 C/G P471A plus 23687182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 1p36.23-p36.11 F-box protein 42 34613 rs12069239 FBXO42 54455 1 16323214 XM_048774 XP_048774 C/G P471A plus 23687182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 1p36.23-p36.11 F-box protein 42 34614 rs12069239 FBXO42 54455 1 16323214 XM_048774 XP_048774 C/G P471A plus 23687182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 1p36.23-p36.11 F-box protein 42 34615 rs12075844 LAMB3 3914 1 206185648 NM_000228 NP_000219 C/T N690S plus 24155065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 1q32 "laminin, beta 3" 34616 rs12075844 LAMB3 3914 1 206185648 NM_000228 NP_000219 C/T N690S plus 24155065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 "by cluster,freq" 1q32 "laminin, beta 3" 34617 rs12075844 LAMB3 3914 1 206185648 NM_000228 NP_000219 C/T N690S plus 24155065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 1q32 "laminin, beta 3" 34618 rs12091750 PLEKHM2 23207 1 15788072 XM_290944 XP_290944 C/T I142T plus 23160233 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.31 123 "by doubleHit,freq,cluster" 1p36.13 "pleckstrin homology domain containing, family M (with RUN domain) member 2" 34619 rs12091750 PLEKHM2 23207 1 15788072 XM_290944 XP_290944 C/T I142T plus 23160233 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.4 123 "by doubleHit,freq,cluster" 1p36.13 "pleckstrin homology domain containing, family M (with RUN domain) member 2" 34620 rs12091750 PLEKHM2 23207 1 15788072 XM_290944 XP_290944 C/T I142T plus 23160233 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.05 123 "by doubleHit,freq,cluster" 1p36.13 "pleckstrin homology domain containing, family M (with RUN domain) member 2" 34621 rs12099204 TTC17 55761 11 43369604 NM_018259 NP_060729 A/C I145L plus 18216221 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p11.2 tetratricopeptide repeat domain 17 34622 rs12102203 RC3 23312 15 49578851 NM_015263 NP_056078 A/G S1288P plus 24667180 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 15q15.3 rabconnectin-3 34623 rs12102203 RC3 23312 15 49578851 NM_015263 NP_056078 A/G S1288P plus 24667180 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by doubleHit,freq" 15q15.3 rabconnectin-3 34624 rs12102203 RC3 23312 15 49578851 NM_015263 NP_056078 A/G S1288P plus 24667180 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 15q15.3 rabconnectin-3 34625 rs12110451 MDN1 23195 6 90539118 NM_014611 NP_055426 C/T I660V plus 24016916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34626 rs12110451 MDN1 23195 6 90539118 NM_014611 NP_055426 C/T I660V plus 24016916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34627 rs12110451 MDN1 23195 6 90539118 NM_014611 NP_055426 C/T I660V plus 24016916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34628 rs12110554 LAMA4 3910 6 112548198 NM_002290 NP_002281 C/T N1542S plus 23391996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q21 "laminin, alpha 4" 34629 rs12110554 LAMA4 3910 6 112548198 NM_002290 NP_002281 C/T N1542S plus 23391996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 6q21 "laminin, alpha 4" 34630 rs12110554 LAMA4 3910 6 112548198 NM_002290 NP_002281 C/T N1542S plus 23391996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 6q21 "laminin, alpha 4" 34631 rs12120084 KIF14 9928 1 197254223 XM_375825 XP_375825 C/G P1633A plus 24245115 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 1pter-q31.3 kinesin family member 14 34632 rs12120084 KIF14 9928 1 197254223 XM_375825 XP_375825 C/G P1633A plus 24245115 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1pter-q31.3 kinesin family member 14 34633 rs12120084 KIF14 9928 1 197254223 XM_375825 XP_375825 C/G P1633A plus 24245115 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 1pter-q31.3 kinesin family member 14 34634 rs12129883 PTPRC 5788 1 195407720 NM_002838 NP_002829 A/C I294L plus 18268021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 "HapMap,doubleHit" 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 34635 rs12129883 PTPRC 5788 1 195407720 NM_080921 NP_563578 A/C I133L plus 18268021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 "HapMap,doubleHit" 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 34636 rs12129883 PTPRC 5788 1 195407720 NM_080922 NP_563579 A/C I246L plus 18268021 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.01 120 "HapMap,doubleHit" 1q31-q32 "protein tyrosine phosphatase, receptor type, C" 34637 rs12139527 CACNA1S 779 1 197740839 NM_000069 NP_000060 A/G L1800S plus 23161607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 1q32 "calcium channel, voltage-dependent, L type, alpha 1S subunit" 34638 rs12139527 CACNA1S 779 1 197740839 NM_000069 NP_000060 A/G L1800S plus 23161607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 1q32 "calcium channel, voltage-dependent, L type, alpha 1S subunit" 34639 rs12139527 CACNA1S 779 1 197740839 NM_000069 NP_000060 A/G L1800S plus 23161607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by cluster,freq" 1q32 "calcium channel, voltage-dependent, L type, alpha 1S subunit" 34640 rs12146727 C1S 716 12 7040597 NM_001734 NP_001725 A/G R119H plus 23783651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34641 rs12146727 C1S 716 12 7040597 NM_001734 NP_001725 A/G R119H plus 23783651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34642 rs12146727 C1S 716 12 7040597 NM_001734 NP_001725 A/G R119H plus 23783651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34643 rs12146727 C1S 716 12 7040597 NM_201442 NP_958850 A/G R119H plus 23783651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34644 rs12146727 C1S 716 12 7040597 NM_201442 NP_958850 A/G R119H plus 23783651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34645 rs12146727 C1S 716 12 7040597 NM_201442 NP_958850 A/G R119H plus 23783651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 12p13 "complement component 1, s subcomponent" 34646 rs12150427 OR1A2 26189 17 3048441 NM_012352 NP_036484 G/T W293C plus 24212856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 34647 rs12150427 OR1A2 26189 17 3048441 NM_012352 NP_036484 G/T W293C plus 24212856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 34648 rs12150427 OR1A2 26189 17 3048441 NM_012352 NP_036484 G/T W293C plus 24212856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq" 17p13.3 "olfactory receptor, family 1, subfamily A, member 2" 34649 rs12150510 ABCA8 10351 17 64430013 NM_007168 NP_009099 A/T Y489F plus 18307194 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 34650 rs12174042 VNN3 55350 6 133097158 NM_078625 NP_523239 C/T E91K plus 24027746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 6q23-q24 vanin 3 34651 rs12174042 VNN3 55350 6 133097158 NM_078625 NP_523239 C/T E91K plus 24027746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 6q23-q24 vanin 3 34652 rs12174042 VNN3 55350 6 133097158 NM_078625 NP_523239 C/T E91K plus 24027746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 6q23-q24 vanin 3 34653 rs12185233 IMP5 162540 17 41279434 NM_175882 NP_787078 C/G R461P plus 24592486 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 17q21.31 intramembrane protease 5 34654 rs12185233 IMP5 162540 17 41279434 NM_175882 NP_787078 C/G R461P plus 24592486 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 17q21.31 intramembrane protease 5 34655 rs12185233 IMP5 162540 17 41279434 NM_175882 NP_787078 C/G R461P plus 24592486 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.31 intramembrane protease 5 34656 rs12185268 IMP5 162540 17 41279463 NM_175882 NP_787078 A/G I471V plus 24592493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq" 17q21.31 intramembrane protease 5 34657 rs12185268 IMP5 162540 17 41279463 NM_175882 NP_787078 A/G I471V plus 24592493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq" 17q21.31 intramembrane protease 5 34658 rs12185268 IMP5 162540 17 41279463 NM_175882 NP_787078 A/G I471V plus 24592493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 17q21.31 intramembrane protease 5 34659 rs12192544 CYP39A1 51302 6 46728211 NM_016593 NP_057677 C/G R23P plus 24145756 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 34660 rs12192544 CYP39A1 51302 6 46728211 NM_016593 NP_057677 C/G R23P plus 24145756 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 "by cluster,freq" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 34661 rs12192544 CYP39A1 51302 6 46728211 NM_016593 NP_057677 C/G R23P plus 24145756 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 6p21.1-p11.2 "cytochrome P450, family 39, subfamily A, polypeptide 1" 34662 rs12195921 NUP153 9972 6 17783225 NM_005124 NP_005115 C/T I248V plus 24437508 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 6p22.3 nucleoporin 153kDa 34663 rs12195921 NUP153 9972 6 17783225 NM_005124 NP_005115 C/T I248V plus 24437508 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6p22.3 nucleoporin 153kDa 34664 rs12195921 NUP153 9972 6 17783225 NM_005124 NP_005115 C/T I248V plus 24437508 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p22.3 nucleoporin 153kDa 34665 rs12197079 PNPLA1 285848 6 36382131 NM_173676 NP_775947 C/T T395M plus 23416020 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 "by doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 34666 rs12197079 PNPLA1 285848 6 36382131 NM_173676 NP_775947 C/T T395M plus 23416020 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.31 123 "by doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 34667 rs12197079 PNPLA1 285848 6 36382131 NM_173676 NP_775947 C/T T395M plus 23416020 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 6p21.31 patatin-like phospholipase domain containing 1 34668 rs12199003 UNQ9356 389400 6 55304546 NM_207410 NP_997293 C/T R33C plus 23773687 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 "by cluster,freq" 6p12.1 IVFI9356 34669 rs12199003 UNQ9356 389400 6 55304546 NM_207410 NP_997293 C/T R33C plus 23773687 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by cluster,freq" 6p12.1 IVFI9356 34670 rs12199003 UNQ9356 389400 6 55304546 NM_207410 NP_997293 C/T R33C plus 23773687 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 6p12.1 IVFI9356 34671 rs12199734 TFAP2BL1 83741 6 50790972 NM_172238 NP_758438 A/G H75R plus 18381266 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 6p12.1 transcription factor AP-2 beta (activating enhancer binding protein 2 beta)-like 1 34672 rs12204826 RSHL2 83861 6 159369212 NM_031924 NP_114130 C/T E484K plus 24504189 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6q25.3 radial spokehead-like 2 34673 rs12204826 RSHL2 83861 6 159369212 NM_031924 NP_114130 C/T E484K plus 24504189 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q25.3 radial spokehead-like 2 34674 rs12204826 RSHL2 83861 6 159369212 NM_031924 NP_114130 C/T E484K plus 24504189 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25.3 radial spokehead-like 2 34675 rs12205497 CRISP1 167 6 49922338 NM_001131 NP_001122 C/T T97A plus 24687608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 by freq 6p21.3 cysteine-rich secretory protein 1 34676 rs12205497 CRISP1 167 6 49922338 NM_001131 NP_001122 C/T T97A plus 24687608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 6p21.3 cysteine-rich secretory protein 1 34677 rs12205497 CRISP1 167 6 49922338 NM_001131 NP_001122 C/T T97A plus 24687608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 6p21.3 cysteine-rich secretory protein 1 34678 rs12205497 CRISP1 167 6 49922338 NM_170609 NP_733758 C/T T97A plus 24687608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.16 123 by freq 6p21.3 cysteine-rich secretory protein 1 34679 rs12205497 CRISP1 167 6 49922338 NM_170609 NP_733758 C/T T97A plus 24687608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 6p21.3 cysteine-rich secretory protein 1 34680 rs12205497 CRISP1 167 6 49922338 NM_170609 NP_733758 C/T T97A plus 24687608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 6p21.3 cysteine-rich secretory protein 1 34681 rs12210538 SLC22A16 85413 6 110866701 NM_033125 NP_149116 A/G M409T plus 24462140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.2 123 by freq 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 34682 rs12210538 SLC22A16 85413 6 110866701 NM_033125 NP_149116 A/G M409T plus 24462140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 28 0.07 123 by freq 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 34683 rs12210538 SLC22A16 85413 6 110866701 NM_033125 NP_149116 A/G M409T plus 24462140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 by freq 6q22.1 "solute carrier family 22 (organic cation transporter), member 16" 34684 rs12217769 LRRC22 340745 10 85971822 XM_291697 XP_291697 A/G V496A plus 24069897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 34685 rs12217769 LRRC22 340745 10 85971822 XM_291697 XP_291697 A/G V496A plus 24069897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 34686 rs12217769 LRRC22 340745 10 85971822 XM_291697 XP_291697 A/G V496A plus 24069897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by cluster,freq" 10q23.2 leucine rich repeat containing 22 34687 rs12236219 ZNF169 169841 9 94142536 NM_194320 NP_919301 C/T R368C plus 24071042 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 9q22.32 zinc finger protein 169 34688 rs12236219 ZNF169 169841 9 94142536 NM_194320 NP_919301 C/T R368C plus 24071042 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 9q22.32 zinc finger protein 169 34689 rs12236219 ZNF169 169841 9 94142536 NM_194320 NP_919301 C/T R368C plus 24071042 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 9q22.32 zinc finger protein 169 34690 rs12262099 LRRC21 26103 10 85982370 NM_015613 NP_056428 G/T P389T plus 23550999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 34691 rs12262099 LRRC21 26103 10 85982370 NM_015613 NP_056428 G/T P389T plus 23550999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 34692 rs12262099 LRRC21 26103 10 85982370 NM_015613 NP_056428 G/T P389T plus 23550999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q23 leucine rich repeat containing 21 34693 rs12272419 DKFZP434G2226 81930 11 28066727 NM_031217 NP_112494 C/T T273A plus 24149195 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 11p14.1 kinesin family member 18A 34694 rs12272419 DKFZP434G2226 81930 11 28066727 NM_031217 NP_112494 C/T T273A plus 24149195 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 11p14.1 kinesin family member 18A 34695 rs12272419 DKFZP434G2226 81930 11 28066727 NM_031217 NP_112494 C/T T273A plus 24149195 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 11p14.1 kinesin family member 18A 34696 rs12273710 TTC17 55761 11 43375589 NM_018259 NP_060729 A/G S297N plus 18682719 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p11.2 tetratricopeptide repeat domain 17 34697 rs12282627 M11S1 4076 11 34074660 NM_005898 NP_005889 G/T Q588H plus 18703268 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p13 "membrane component, chromosome 11, surface marker 1" 34698 rs12282627 M11S1 4076 11 34074660 NM_203364 NP_976240 G/T Q588H plus 18703268 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p13 "membrane component, chromosome 11, surface marker 1" 34699 rs12291617 OR8K3 219473 11 55842875 XM_166825 XP_166825 A/G V173I plus 23604954 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 34700 rs12291617 OR8K3 219473 11 55842875 XM_166825 XP_166825 A/G V173I plus 23604954 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 34701 rs12291617 OR8K3 219473 11 55842875 XM_166825 XP_166825 A/G V173I plus 23604954 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 34702 rs12295161 MAPK8IP1 9479 11 45880952 NM_005456 NP_005447 A/G R353Q plus 18732235 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11p12-p11.2 mitogen-activated protein kinase 8 interacting protein 1 34703 rs12309295 OVOS2 144203 12 31189138 XM_495917 XP_495917 C/G L587V plus 23324638 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.18 123 "by cluster,freq" 12p11.22 ovostatin 2 34704 rs12309295 OVOS2 144203 12 31189138 XM_495917 XP_495917 C/G L587V plus 23324638 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.39 123 "by cluster,freq" 12p11.22 ovostatin 2 34705 rs12309295 OVOS2 144203 12 31189138 XM_495917 XP_495917 C/G L587V plus 23324638 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 "by cluster,freq" 12p11.22 ovostatin 2 34706 rs12313736 SSPN 8082 12 26275226 NM_005086 NP_005077 A/G V228I plus 23433487 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 12p11.2 sarcospan (Kras oncogene-associated gene) 34707 rs12313736 SSPN 8082 12 26275226 NM_005086 NP_005077 A/G V228I plus 23433487 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 "by cluster,freq" 12p11.2 sarcospan (Kras oncogene-associated gene) 34708 rs12313736 SSPN 8082 12 26275226 NM_005086 NP_005077 A/G V228I plus 23433487 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 12p11.2 sarcospan (Kras oncogene-associated gene) 34709 rs12319376 ELKS 23085 12 1424058 NM_178039 NP_829883 A/G T1004A plus 23659982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34710 rs12319376 ELKS 23085 12 1424058 NM_178039 NP_829883 A/G T1004A plus 23659982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34711 rs12319376 ELKS 23085 12 1424058 NM_178039 NP_829883 A/G T1004A plus 23659982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34712 rs12319376 ELKS 23085 12 1424058 NM_178040 NP_829884 A/G T1032A plus 23659982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34713 rs12319376 ELKS 23085 12 1424058 NM_178040 NP_829884 A/G T1032A plus 23659982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34714 rs12319376 ELKS 23085 12 1424058 NM_178040 NP_829884 A/G T1032A plus 23659982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 12p13.3 Rab6-interacting protein 2 34715 rs12350212 ZNF169 169841 9 94143183 NM_194320 NP_919301 C/G Q583H plus 24529192 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by doubleHit,freq" 9q22.32 zinc finger protein 169 34716 rs12350212 ZNF169 169841 9 94143183 NM_194320 NP_919301 C/G Q583H plus 24529192 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq" 9q22.32 zinc finger protein 169 34717 rs12350212 ZNF169 169841 9 94143183 NM_194320 NP_919301 C/G Q583H plus 24529192 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 9q22.32 zinc finger protein 169 34718 rs12354886 ZNF485 220992 10 43432251 NM_145312 NP_660355 A/G A213T plus 23573979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by cluster,freq" 10q11.21 zinc finger protein 485 34719 rs12354886 ZNF485 220992 10 43432251 NM_145312 NP_660355 A/G A213T plus 23573979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 10q11.21 zinc finger protein 485 34720 rs12354886 ZNF485 220992 10 43432251 NM_145312 NP_660355 A/G A213T plus 23573979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 10q11.21 zinc finger protein 485 34721 rs12356364 IDE 3416 10 94206153 NM_004969 NP_004960 C/T D947N plus 18875364 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 10q23-q25 insulin-degrading enzyme 34722 rs12364099 OR6X1 390260 11 123129868 XM_372434 XP_372434 G/T T190N plus 18938068 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.12 123 "HapMap,freq" 11q24.1 "olfactory receptor, family 6, subfamily X, member 1" 34723 rs12364099 OR6X1 390260 11 123129868 XM_372434 XP_372434 G/T T190N plus 24589507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 "HapMap,freq" 11q24.1 "olfactory receptor, family 6, subfamily X, member 1" 34724 rs12364099 OR6X1 390260 11 123129868 XM_372434 XP_372434 G/T T190N plus 24589507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "HapMap,freq" 11q24.1 "olfactory receptor, family 6, subfamily X, member 1" 34725 rs12364099 OR6X1 390260 11 123129868 XM_372434 XP_372434 G/T T190N plus 24589507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "HapMap,freq" 11q24.1 "olfactory receptor, family 6, subfamily X, member 1" 34726 rs12364710 UVRAG 7405 11 75372130 NM_003369 NP_003360 C/G L251V plus 18942657 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q13.5 UV radiation resistance associated gene 34727 rs12373123 IMP5 162540 17 41279853 NM_175882 NP_787078 C/T S601P plus 24592514 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 17q21.31 intramembrane protease 5 34728 rs12373123 IMP5 162540 17 41279853 NM_175882 NP_787078 C/T S601P plus 24592514 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 17q21.31 intramembrane protease 5 34729 rs12373123 IMP5 162540 17 41279853 NM_175882 NP_787078 C/T S601P plus 24592514 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.31 intramembrane protease 5 34730 rs12373540 ZNF546 339327 19 45212971 NM_178544 NP_848639 C/T L652F plus 19009063 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.2 zinc finger protein 546 34731 rs12407578 VPS13D 55187 1 12271933 NM_015378 NP_056193 C/T S1341L plus 19132767 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 120 HapMap 1p36.21 vacuolar protein sorting 13D (yeast) 34732 rs12422149 SLCO2B1 11309 11 74561225 NM_007256 NP_009187 A/G R312Q plus 24149359 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 11q13 "solute carrier organic anion transporter family, member 2B1" 34733 rs12422149 SLCO2B1 11309 11 74561225 NM_007256 NP_009187 A/G R312Q plus 24149359 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 11q13 "solute carrier organic anion transporter family, member 2B1" 34734 rs12422149 SLCO2B1 11309 11 74561225 NM_007256 NP_009187 A/G R312Q plus 24149359 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 11q13 "solute carrier organic anion transporter family, member 2B1" 34735 rs12425518 OR8S1 341568 12 47206273 XM_292136 XP_292136 A/G A198T plus 23977236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 "by doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 34736 rs12425518 OR8S1 341568 12 47206273 XM_292136 XP_292136 A/G A198T plus 23977236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.24 123 "by doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 34737 rs12425518 OR8S1 341568 12 47206273 XM_292136 XP_292136 A/G A198T plus 23977236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 12q13.12 "olfactory receptor, family 8, subfamily S, member 1" 34738 rs12440118 SH3BP3 64397 15 40531386 NM_022473 NP_071918 A/G W103R plus 24393543 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 15q14 zinc finger protein 106 homolog (mouse) 34739 rs12440118 SH3BP3 64397 15 40531386 NM_022473 NP_071918 A/G W103R plus 24393543 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q14 zinc finger protein 106 homolog (mouse) 34740 rs12440118 SH3BP3 64397 15 40531386 NM_022473 NP_071918 A/G W103R plus 24393543 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 zinc finger protein 106 homolog (mouse) 34741 rs12440300 GLCE 26035 15 67335392 XM_290631 XP_290631 A/G M65V plus 19321276 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.02 120 "HapMap,freq" 15q22.31 glucuronyl C5-epimerase 34742 rs12449313 SMCR8 140775 17 18161735 NM_144775 NP_658988 A/G N636S plus 24127806 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 "by cluster,freq" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 34743 rs12449313 SMCR8 140775 17 18161735 NM_144775 NP_658988 A/G N636S plus 24127806 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 34744 rs12449313 SMCR8 140775 17 18161735 NM_144775 NP_658988 A/G N636S plus 24127806 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by cluster,freq" 17p11.2 "Smith-Magenis syndrome chromosome region, candidate 8" 34745 rs12449580 AIPL1 23746 17 6277971 NM_014336 NP_055151 C/G D90H plus 24208893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 "by doubleHit,freq,cluster" 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 34746 rs12449580 AIPL1 23746 17 6277971 NM_014336 NP_055151 C/G D90H plus 24208893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 34747 rs12449580 AIPL1 23746 17 6277971 NM_014336 NP_055151 C/G D90H plus 24208893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 34748 rs12450550 EME1 146956 17 45811192 NM_152463 NP_689676 C/T I350T plus 24595140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 34749 rs12450550 EME1 146956 17 45811192 NM_152463 NP_689676 C/T I350T plus 24595140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 34750 rs12450550 EME1 146956 17 45811192 NM_152463 NP_689676 C/T I350T plus 24595140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 "by doubleHit,freq,cluster" 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 34751 rs12456560 KNTC2 10403 18 2585443 NM_006101 NP_006092 G/T E348D plus 24468834 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 18p11.31 kinetochore associated 2 34752 rs12456560 KNTC2 10403 18 2585443 NM_006101 NP_006092 G/T E348D plus 24468834 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18p11.31 kinetochore associated 2 34753 rs12456560 KNTC2 10403 18 2585443 NM_006101 NP_006092 G/T E348D plus 24468834 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 18p11.31 kinetochore associated 2 34754 rs12457323 LAMA3 3909 18 19678984 NM_198129 NP_937762 C/T V1206A plus 24218059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 18q11.2 "laminin, alpha 3" 34755 rs12457323 LAMA3 3909 18 19678984 NM_198129 NP_937762 C/T V1206A plus 24218059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q11.2 "laminin, alpha 3" 34756 rs12457323 LAMA3 3909 18 19678984 NM_198129 NP_937762 C/T V1206A plus 24218059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 by freq 18q11.2 "laminin, alpha 3" 34757 rs12459238 CALR3 125972 19 16454359 NM_145046 NP_659483 C/T V274I plus 23812757 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19p13.12 calreticulin 3 34758 rs12459238 CALR3 125972 19 16454359 NM_145046 NP_659483 C/T V274I plus 23812757 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19p13.12 calreticulin 3 34759 rs12459238 CALR3 125972 19 16454359 NM_145046 NP_659483 C/T V274I plus 23812757 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 19p13.12 calreticulin 3 34760 rs12460394 PLEKHA4 57664 19 54036333 NM_020904 NP_065955 C/T R597Q plus 19399542 885 TSC-CSHL HapMap-CEPH-30-trios 118 0.01 120 HapMap 19q13.33 "pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4" 34761 rs12460449 MARK4 57787 19 50466633 NM_031417 NP_113605 C/G E205Q plus 19399715 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.3 MAP/microtubule affinity-regulating kinase 4 34762 rs12461110 NALP11 204801 19 61012475 NM_145007 NP_659444 A/G P438L plus 24583552 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 34763 rs12461110 NALP11 204801 19 61012475 NM_145007 NP_659444 A/G P438L plus 24583552 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 34764 rs12461110 NALP11 204801 19 61012475 NM_145007 NP_659444 A/G P438L plus 24583552 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 11" 34765 rs12461754 DDX39 10212 19 14381829 NM_138998 NP_620551 A/G L311F plus 19404201 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.11 123 "HapMap,freq,cluster" 19p13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 34766 rs12461754 DDX39 10212 19 14381829 NM_138998 NP_620551 A/G L311F plus 24061713 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "HapMap,freq,cluster" 19p13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 34767 rs12461754 DDX39 10212 19 14381829 NM_138998 NP_620551 A/G L311F plus 24061713 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 "HapMap,freq,cluster" 19p13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 34768 rs12461754 DDX39 10212 19 14381829 NM_138998 NP_620551 A/G L311F plus 24061713 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "HapMap,freq,cluster" 19p13.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 34769 rs12462372 NALP4 147945 19 61065274 NM_134444 NP_604393 A/G R708H plus 24116054 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 34770 rs12462372 NALP4 147945 19 61065274 NM_134444 NP_604393 A/G R708H plus 24116054 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 34771 rs12462372 NALP4 147945 19 61065274 NM_134444 NP_604393 A/G R708H plus 24116054 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 4" 34772 rs12462795 NALP5 126206 19 61261441 NM_153447 NP_703148 C/G S1108C plus 24116896 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.16 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 34773 rs12462795 NALP5 126206 19 61261441 NM_153447 NP_703148 C/G S1108C plus 24116896 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 34774 rs12462795 NALP5 126206 19 61261441 NM_153447 NP_703148 C/G S1108C plus 24116896 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 "by cluster,freq" 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 34775 rs12471298 SEMA4C 54910 2 96948662 NM_017789 NP_060259 A/C E693X plus 19438475 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 2q11.2 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C" 34776 rs12475068 UGT1A5 54579 2 234404110 NM_019078 NP_061951 C/G A158G plus 19452339 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,doubleHit,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A5" 34777 rs12479813 RRBP1 6238 20 17544155 NM_004587 NP_004578 A/C R891L plus 24125710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by cluster,freq" 20p12 ribosome binding protein 1 homolog 180kDa (dog) 34778 rs12479813 RRBP1 6238 20 17544155 NM_004587 NP_004578 A/C R891L plus 24125710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 20p12 ribosome binding protein 1 homolog 180kDa (dog) 34779 rs12479813 RRBP1 6238 20 17544155 NM_004587 NP_004578 A/C R891L plus 24125710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 "by cluster,freq" 20p12 ribosome binding protein 1 homolog 180kDa (dog) 34780 rs12488237 CAST 26059 3 56089901 NM_015576 NP_056391 C/T N542S plus 24220970 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 3p21.31 CAZ-associated structural protein 34781 rs12488237 CAST 26059 3 56089901 NM_015576 NP_056391 C/T N542S plus 24220970 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 3p21.31 CAZ-associated structural protein 34782 rs12488237 CAST 26059 3 56089901 NM_015576 NP_056391 C/T N542S plus 24220970 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.09 123 by freq 3p21.31 CAZ-associated structural protein 34783 rs12488879 RASSF1 11186 3 50343095 NM_007182 NP_009113 C/T H315R plus 19518569 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 121 "HapMap,doubleHit,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 34784 rs12488879 RASSF1 11186 3 50343095 NM_170712 NP_733830 C/T H164R plus 19518569 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 121 "HapMap,doubleHit,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 34785 rs12488879 RASSF1 11186 3 50343095 NM_170713 NP_733831 C/T H245R plus 19518569 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 121 "HapMap,doubleHit,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 34786 rs12488879 RASSF1 11186 3 50343095 NM_170714 NP_733832 C/T H319R plus 19518569 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 121 "HapMap,doubleHit,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 34787 rs12488879 RASSF1 11186 3 50343095 NM_170715 NP_733833 C/T H319R plus 19518569 885 TSC-CSHL HapMap-CEPH-30-trios 106 1 121 "HapMap,doubleHit,cluster" 3p21.3 Ras association (RalGDS/AF-6) domain family 1 34788 rs12500797 PTPN13 5783 4 88049572 NM_006264 NP_006255 A/G E1606K plus 24246837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34789 rs12500797 PTPN13 5783 4 88049572 NM_006264 NP_006255 A/G E1606K plus 24246837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34790 rs12500797 PTPN13 5783 4 88049572 NM_006264 NP_006255 A/G E1606K plus 24246837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34791 rs12500797 PTPN13 5783 4 88049572 NM_080683 NP_542414 A/G E1625K plus 24246837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34792 rs12500797 PTPN13 5783 4 88049572 NM_080683 NP_542414 A/G E1625K plus 24246837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34793 rs12500797 PTPN13 5783 4 88049572 NM_080683 NP_542414 A/G E1625K plus 24246837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34794 rs12500797 PTPN13 5783 4 88049572 NM_080684 NP_542415 A/G E1434K plus 24246837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34795 rs12500797 PTPN13 5783 4 88049572 NM_080684 NP_542415 A/G E1434K plus 24246837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34796 rs12500797 PTPN13 5783 4 88049572 NM_080684 NP_542415 A/G E1434K plus 24246837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34797 rs12500797 PTPN13 5783 4 88049572 NM_080685 NP_542416 A/G E1630K plus 24246837 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34798 rs12500797 PTPN13 5783 4 88049572 NM_080685 NP_542416 A/G E1630K plus 24246837 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34799 rs12500797 PTPN13 5783 4 88049572 NM_080685 NP_542416 A/G E1630K plus 24246837 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 34800 rs12504081 FRAS1 80144 4 79562878 NM_020875 NP_065926 A/T L466I plus 23844993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34801 rs12504081 FRAS1 80144 4 79562878 NM_020875 NP_065926 A/T L466I plus 23844993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34802 rs12504081 FRAS1 80144 4 79562878 NM_020875 NP_065926 A/T L466I plus 23844993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34803 rs12504081 FRAS1 80144 4 79562878 NM_032863 NP_116252 A/T L466I plus 23844993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34804 rs12504081 FRAS1 80144 4 79562878 NM_032863 NP_116252 A/T L466I plus 23844993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34805 rs12504081 FRAS1 80144 4 79562878 NM_032863 NP_116252 A/T L466I plus 23844993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34806 rs12504081 FRAS1 80144 4 79562878 NM_206841 NP_996672 A/T L466I plus 23844993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34807 rs12504081 FRAS1 80144 4 79562878 NM_206841 NP_996672 A/T L466I plus 23844993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34808 rs12504081 FRAS1 80144 4 79562878 NM_206841 NP_996672 A/T L466I plus 23844993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 4q21.21 Fraser syndrome 1 34809 rs12507775 RASSF6 166824 4 74816108 NM_177532 NP_803876 A/G S131P plus 23252595 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34810 rs12507775 RASSF6 166824 4 74816108 NM_177532 NP_803876 A/G S131P plus 23252595 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34811 rs12507775 RASSF6 166824 4 74816108 NM_177532 NP_803876 A/G S131P plus 23252595 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34812 rs12507775 RASSF6 166824 4 74816108 NM_201431 NP_958834 A/G S163P plus 23252595 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34813 rs12507775 RASSF6 166824 4 74816108 NM_201431 NP_958834 A/G S163P plus 23252595 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34814 rs12507775 RASSF6 166824 4 74816108 NM_201431 NP_958834 A/G S163P plus 23252595 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 4q21.21 Ras association (RalGDS/AF-6) domain family 6 34815 rs12512164 FRAS1 80144 4 79658172 NM_206841 NP_996672 A/G E1135K plus 24248334 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 4q21.21 Fraser syndrome 1 34816 rs12512164 FRAS1 80144 4 79658172 NM_206841 NP_996672 A/G E1135K plus 24248334 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 4q21.21 Fraser syndrome 1 34817 rs12512164 FRAS1 80144 4 79658172 NM_206841 NP_996672 A/G E1135K plus 24248334 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 4q21.21 Fraser syndrome 1 34818 rs12514417 ALDH7A1 501 5 125915614 NM_001182 NP_001173 G/T K411Q plus 23939488 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q31 "aldehyde dehydrogenase 7 family, member A1" 34819 rs12514417 ALDH7A1 501 5 125915614 NM_001182 NP_001173 G/T K411Q plus 23939488 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 5q31 "aldehyde dehydrogenase 7 family, member A1" 34820 rs12514417 ALDH7A1 501 5 125915614 NM_001182 NP_001173 G/T K411Q plus 23939488 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 "by doubleHit,freq,cluster" 5q31 "aldehyde dehydrogenase 7 family, member A1" 34821 rs12515587 PCDH1 5097 5 141229147 NM_002587 NP_002578 G/T H25P plus 19617062 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 120 "HapMap,doubleHit,freq" 5q32-q33 protocadherin 1 (cadherin-like 1) 34822 rs12515587 PCDH1 5097 5 141229147 NM_032420 NP_115796 G/T H25P plus 19617062 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 120 "HapMap,doubleHit,freq" 5q32-q33 protocadherin 1 (cadherin-like 1) 34823 rs12516652 SEMA6A 57556 5 115839147 NM_020796 NP_065847 G/T D567E plus 24009040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 34824 rs12516652 SEMA6A 57556 5 115839147 NM_020796 NP_065847 G/T D567E plus 24009040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 34825 rs12516652 SEMA6A 57556 5 115839147 NM_020796 NP_065847 G/T D567E plus 24009040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 34826 rs12517177 RNASE3L 29102 5 31503900 NM_013235 NP_037367 C/G L757V plus 19623803 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 5p13.3 nuclear RNase III Drosha 34827 rs12517689 CART 9607 5 71052184 NM_004291 NP_004282 A/C L113M plus 19625901 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 5q13.2 cocaine- and amphetamine-regulated transcript 34828 rs12520591 ITGA1 3672 5 52265502 NM_181501 NP_852478 G/T I961M plus 23983003 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 34829 rs12520591 ITGA1 3672 5 52265502 NM_181501 NP_852478 G/T I961M plus 23983003 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 34830 rs12520591 ITGA1 3672 5 52265502 NM_181501 NP_852478 G/T I961M plus 23983003 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 5q11.2 "integrin, alpha 1" 34831 rs12520799 DCNP1 140947 5 134810349 NM_130848 NP_570900 A/T R117X plus 24388182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34832 rs12520799 DCNP1 140947 5 134810349 NM_130848 NP_570900 A/T R117X plus 24388182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34833 rs12520799 DCNP1 140947 5 134810349 NM_130848 NP_570900 A/T R117X plus 24388182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.46 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34834 rs12520809 DCNP1 140947 5 134810409 NM_130848 NP_570900 C/T N97D plus 24388190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34835 rs12520809 DCNP1 140947 5 134810409 NM_130848 NP_570900 C/T N97D plus 24388190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34836 rs12520809 DCNP1 140947 5 134810409 NM_130848 NP_570900 C/T N97D plus 24388190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 5q31.2 dendritic cell nuclear protein 1 34837 rs12530146 MDN1 23195 6 90465463 NM_014611 NP_055426 C/T E3004K plus 23983289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34838 rs12530146 MDN1 23195 6 90465463 NM_014611 NP_055426 C/T E3004K plus 23983289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34839 rs12530146 MDN1 23195 6 90465463 NM_014611 NP_055426 C/T E3004K plus 23983289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 6q15 "MDN1, midasin homolog (yeast)" 34840 rs12540583 NAPE-PLD 222236 7 102354462 NM_198990 NP_945341 A/C S152A plus 24027775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q22.1 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 34841 rs12540583 NAPE-PLD 222236 7 102354462 NM_198990 NP_945341 A/C S152A plus 24027775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 7q22.1 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 34842 rs12540583 NAPE-PLD 222236 7 102354462 NM_198990 NP_945341 A/C S152A plus 24027775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 7q22.1 N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 34843 rs12541381 ZNF406 57623 8 135719030 NM_020863 NP_065914 A/G P102S plus 24040982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 8q24.22 zinc finger protein 406 34844 rs12541381 ZNF406 57623 8 135719030 NM_020863 NP_065914 A/G P102S plus 24040982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 8q24.22 zinc finger protein 406 34845 rs12541381 ZNF406 57623 8 135719030 NM_020863 NP_065914 A/G P102S plus 24040982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 8q24.22 zinc finger protein 406 34846 rs12564106 EIF2C1 26523 1 36050217 NM_012199 NP_036331 C/T P670L plus 19843112 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 120 HapMap 1p35-p34 "eukaryotic translation initiation factor 2C, 1" 34847 rs12564869 ZCCHC11 23318 1 52608951 XM_038288 XP_038288 A/T H1488L plus 19847498 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 1p32.3 "zinc finger, CCHC domain containing 11" 34848 rs12567021 PODN 127435 1 53256534 NM_153703 NP_714914 C/T T492M plus 23838470 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 1p32.3 podocan 34849 rs12567021 PODN 127435 1 53256534 NM_153703 NP_714914 C/T T492M plus 23838470 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 1p32.3 podocan 34850 rs12567021 PODN 127435 1 53256534 NM_153703 NP_714914 C/T T492M plus 23838470 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by cluster,freq" 1p32.3 podocan 34851 rs12569699 DNA2L 1763 10 69879901 XM_166103 XP_166103 C/T D363N plus 19875592 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 10q21.3-q22.1 DNA2 DNA replication helicase 2-like (yeast) 34852 rs12572012 MPHOSPH1 9585 10 91477629 NM_016195 NP_057279 A/T N716I plus 24088390 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 34853 rs12572012 MPHOSPH1 9585 10 91477629 NM_016195 NP_057279 A/T N716I plus 24088390 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 34854 rs12572012 MPHOSPH1 9585 10 91477629 NM_016195 NP_057279 A/T N716I plus 24088390 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 10q23.32 M-phase phosphoprotein 1 34855 rs12575547 RDX 5962 11 109640725 NM_002906 NP_002897 C/G L61V plus 19912768 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 11q23 radixin 34856 rs12577167 OR51I2 390064 11 5431694 XM_372357 XP_372357 A/G T134A plus 24073703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 34857 rs12577167 OR51I2 390064 11 5431694 XM_372357 XP_372357 A/G T134A plus 24073703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 34858 rs12577167 OR51I2 390064 11 5431694 XM_372357 XP_372357 A/G T134A plus 24073703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 34859 rs12586264 IPO4 79711 14 23723363 NM_024658 NP_078934 C/G P580A plus 24217271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by cluster,freq" 14q11.2 importin 4 34860 rs12586264 IPO4 79711 14 23723363 NM_024658 NP_078934 C/G P580A plus 24217271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 14q11.2 importin 4 34861 rs12586264 IPO4 79711 14 23723363 NM_024658 NP_078934 C/G P580A plus 24217271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by cluster,freq" 14q11.2 importin 4 34862 rs12586264 IPO4 79711 14 23723363 NM_024658 NP_078934 C/G P580A plus 24792528 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 "by cluster,freq" 14q11.2 importin 4 34863 rs12590446 h461 390443 14 20094626 XM_372508 XP_372508 A/G F169S plus 24226634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 14q11.2 ribonuclease-like protein 9 34864 rs12590446 h461 390443 14 20094626 XM_372508 XP_372508 A/G F169S plus 24226634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 14q11.2 ribonuclease-like protein 9 34865 rs12590446 h461 390443 14 20094626 XM_372508 XP_372508 A/G F169S plus 24226634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 14q11.2 ribonuclease-like protein 9 34866 rs12593397 SPTBN5 51332 15 39953792 NM_016642 NP_057726 C/T R1560H plus 24389481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 34867 rs12593397 SPTBN5 51332 15 39953792 NM_016642 NP_057726 C/T R1560H plus 24389481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 34868 rs12593397 SPTBN5 51332 15 39953792 NM_016642 NP_057726 C/T R1560H plus 24389481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 34869 rs12599808 CYLD 1540 16 49343029 NM_015247 NP_056062 A/G G173D plus 20028799 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 16q12.1 cylindromatosis (turban tumor syndrome) 34870 rs12602205 OR4D1 26689 17 53587674 XM_292627 XP_292627 A/G R79Q plus 23791613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 34871 rs12602205 OR4D1 26689 17 53587674 XM_292627 XP_292627 A/G R79Q plus 23791613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 34872 rs12602205 OR4D1 26689 17 53587674 XM_292627 XP_292627 A/G R79Q plus 23791613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 34873 rs12602536 AP1GBP1 11276 17 33011750 NM_007247 NP_009178 C/T T222A plus 20039338 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 120 "HapMap,freq" 17q21.1 AP1 gamma subunit binding protein 1 34874 rs12602536 AP1GBP1 11276 17 33011750 NM_080550 NP_542117 C/T T222A plus 20039338 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 120 "HapMap,freq" 17q21.1 AP1 gamma subunit binding protein 1 34875 rs12608960 SH2D3A 10045 19 6706155 NM_005490 NP_005481 C/T D223G plus 20063760 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.13 120 "HapMap,freq" 19p13.3 SH2 domain containing 3A 34876 rs12608979 RDH13 112724 19 60259896 NM_138412 NP_612421 C/T A22T plus 24204911 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.42 retinol dehydrogenase 13 (all-trans and 9-cis) 34877 rs12608979 RDH13 112724 19 60259896 NM_138412 NP_612421 C/T A22T plus 24204911 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19q13.42 retinol dehydrogenase 13 (all-trans and 9-cis) 34878 rs12608979 RDH13 112724 19 60259896 NM_138412 NP_612421 C/T A22T plus 24204911 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 19q13.42 retinol dehydrogenase 13 (all-trans and 9-cis) 34879 rs12609687 GRIK5 2901 19 47258509 NM_002088 NP_002079 G/T S160X plus 20066276 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 19q13.2 "glutamate receptor, ionotropic, kainate 5" 34880 rs12610094 OR7G2 390882 19 9074132 XM_372708 XP_372708 A/G V263A plus 24225501 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 34881 rs12610094 OR7G2 390882 19 9074132 XM_372708 XP_372708 A/G V263A plus 24225501 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 34882 rs12610094 OR7G2 390882 19 9074132 XM_372708 XP_372708 A/G V263A plus 24225501 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 19p13.2 "olfactory receptor, family 7, subfamily G, member 2" 34883 rs12615112 ST6GalII 84620 2 106909043 NM_032528 NP_115917 C/T I341V plus 23874968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 "by doubleHit,freq,cluster" 2q11.2-q12.1 "beta-galactoside alpha-2,6-sialyltransferase II" 34884 rs12615112 ST6GalII 84620 2 106909043 NM_032528 NP_115917 C/T I341V plus 23874968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 2q11.2-q12.1 "beta-galactoside alpha-2,6-sialyltransferase II" 34885 rs12615112 ST6GalII 84620 2 106909043 NM_032528 NP_115917 C/T I341V plus 23874968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 "by doubleHit,freq,cluster" 2q11.2-q12.1 "beta-galactoside alpha-2,6-sialyltransferase II" 34886 rs12624954 DEFB127 140850 20 87456 NM_139074 NP_620713 A/G G31R plus 24121108 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by cluster,freq" 20p13 "defensin, beta 127" 34887 rs12624954 DEFB127 140850 20 87456 NM_139074 NP_620713 A/G G31R plus 24121108 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 20p13 "defensin, beta 127" 34888 rs12624954 DEFB127 140850 20 87456 NM_139074 NP_620713 A/G G31R plus 24121108 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 "by cluster,freq" 20p13 "defensin, beta 127" 34889 rs12632456 FLNB 2317 3 58093595 NM_001457 NP_001448 A/G V1471M plus 23282968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by cluster,freq" 3p14.3 "filamin B, beta (actin binding protein 278)" 34890 rs12632456 FLNB 2317 3 58093595 NM_001457 NP_001448 A/G V1471M plus 23282968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 "by cluster,freq" 3p14.3 "filamin B, beta (actin binding protein 278)" 34891 rs12632456 FLNB 2317 3 58093595 NM_001457 NP_001448 A/G V1471M plus 23282968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by cluster,freq" 3p14.3 "filamin B, beta (actin binding protein 278)" 34892 rs12645298 SYNPO2 171024 4 120305588 XM_050219 XP_050219 C/G G154A plus 23910760 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 "by doubleHit,freq,cluster" 4q27 synaptopodin 2 34893 rs12645298 SYNPO2 171024 4 120305588 XM_050219 XP_050219 C/G G154A plus 23910760 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by doubleHit,freq,cluster" 4q27 synaptopodin 2 34894 rs12645298 SYNPO2 171024 4 120305588 XM_050219 XP_050219 C/G G154A plus 23910760 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 "by doubleHit,freq,cluster" 4q27 synaptopodin 2 34895 rs12648093 NUDT6 11162 4 124196363 NM_007083 NP_009014 A/G C114R plus 24348735 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.35 123 "by doubleHit,freq,cluster" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 34896 rs12648093 NUDT6 11162 4 124196363 NM_007083 NP_009014 A/G C114R plus 24348735 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 "by doubleHit,freq,cluster" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 34897 rs12648093 NUDT6 11162 4 124196363 NM_007083 NP_009014 A/G C114R plus 24348735 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 "by doubleHit,freq,cluster" 4q26 nudix (nucleoside diphosphate linked moiety X)-type motif 6 34898 rs12651301 HOZFP 152518 4 47742404 NM_152995 NP_694540 A/G P246L plus 24658697 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.3 123 by freq 4p12 ovarian zinc finger protein 34899 rs12651301 HOZFP 152518 4 47742404 NM_152995 NP_694540 A/G P246L plus 24658697 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.24 123 by freq 4p12 ovarian zinc finger protein 34900 rs12651301 HOZFP 152518 4 47742404 NM_152995 NP_694540 A/G P246L plus 24658697 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.27 123 by freq 4p12 ovarian zinc finger protein 34901 rs12651770 TRPC7 57113 5 135629807 NM_020389 NP_065122 C/T G449R plus 20228336 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 5q31.2 "transient receptor potential cation channel, subfamily C, member 7" 34902 rs12657663 CAMLG 819 5 134104711 NM_001745 NP_001736 A/G V78I plus 20251821 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.09 120 "HapMap,freq" 5q23 calcium modulating ligand 34903 rs12662902 IBTK 25998 6 82961060 XM_371835 XP_371835 C/T V1065I plus 20278508 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 120 HapMap 6q14.3 inhibitor of Bruton agammaglobulinemia tyrosine kinase 34904 rs12670788 PODXL 5420 7 130652967 NM_005397 NP_005388 A/G S194L plus 24502104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 "by doubleHit,freq,cluster" 7q32-q33 podocalyxin-like 34905 rs12670788 PODXL 5420 7 130652967 NM_005397 NP_005388 A/G S194L plus 24502104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 7q32-q33 podocalyxin-like 34906 rs12670788 PODXL 5420 7 130652967 NM_005397 NP_005388 A/G S194L plus 24502104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by doubleHit,freq,cluster" 7q32-q33 podocalyxin-like 34907 rs12672205 HYAL4 23553 7 123102279 NM_012269 NP_036401 A/G M1V plus 24031249 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 7q31.3 hyaluronoglucosaminidase 4 34908 rs12672205 HYAL4 23553 7 123102279 NM_012269 NP_036401 A/G M1V plus 24031249 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 7q31.3 hyaluronoglucosaminidase 4 34909 rs12672205 HYAL4 23553 7 123102279 NM_012269 NP_036401 A/G M1V plus 24031249 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 "by cluster,freq" 7q31.3 hyaluronoglucosaminidase 4 34910 rs12691089 APOC4 346 19 50139924 NM_001646 NP_001637 A/G G52D plus 20419758 1232 PHARMGKB_PARC PA129964588 142 0.01 121 "by cluster,freq" 19q13.2 apolipoprotein C-IV 34911 rs12691089 APOC4 346 19 50139924 NM_001646 NP_001637 A/G G52D plus 20419877 1232 PHARMGKB_PARC PA129964588 142 0.01 121 "by cluster,freq" 19q13.2 apolipoprotein C-IV 34912 rs12691089 APOC4 346 19 50139924 NM_001646 NP_001637 A/G G52D plus 20419888 1232 PHARMGKB_PARC PA129964588 142 0.01 121 "by cluster,freq" 19q13.2 apolipoprotein C-IV 34913 rs12691202 APOB 338 2 21161368 NM_000384 NP_000375 A/G V730I minus 20418970 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34914 rs12691202 APOB 338 2 21161368 NM_000384 NP_000375 A/G V730I minus 20419055 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34915 rs12692566 LY75 4065 2 160501934 NM_002349 NP_002340 A/C K1321N plus 24313282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by doubleHit,freq,cluster" 2q24 lymphocyte antigen 75 34916 rs12692566 LY75 4065 2 160501934 NM_002349 NP_002340 A/C K1321N plus 24313282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 "by doubleHit,freq,cluster" 2q24 lymphocyte antigen 75 34917 rs12692566 LY75 4065 2 160501934 NM_002349 NP_002340 A/C K1321N plus 24313282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq,cluster" 2q24 lymphocyte antigen 75 34918 rs12708965 SLC12A3 6559 16 55493820 NM_000339 NP_000330 C/T R928C plus 23417545 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34919 rs12708965 SLC12A3 6559 16 55493820 NM_000339 NP_000330 C/T R928C plus 23417545 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34920 rs12708965 SLC12A3 6559 16 55493820 NM_000339 NP_000330 C/T R928C plus 23417545 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by cluster,freq" 16q13 "solute carrier family 12 (sodium/chloride transporters), member 3" 34921 rs12709426 ACE 1636 17 58915488 NM_000789 NP_000780 A/G D592G plus 20418688 889 PHARMGKB_PARC PA128275074 94 0.03 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34922 rs12709426 ACE 1636 17 58915488 NM_000789 NP_000780 A/G D592G plus 20418718 889 PHARMGKB_PARC PA128275074 94 0.03 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34923 rs12709442 ACE 1636 17 58927947 NM_000789 NP_000780 C/T T1187M plus 20418686 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34924 rs12709442 ACE 1636 17 58927947 NM_000789 NP_000780 C/T T1187M plus 20418775 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34925 rs12709442 ACE 1636 17 58927947 NM_152830 NP_690043 C/T T613M plus 20418686 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34926 rs12709442 ACE 1636 17 58927947 NM_152830 NP_690043 C/T T613M plus 20418775 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34927 rs12709442 ACE 1636 17 58927947 NM_152831 NP_690044 C/T T613M plus 20418686 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34928 rs12709442 ACE 1636 17 58927947 NM_152831 NP_690044 C/T T613M plus 20418775 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 17q23 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 34929 rs12713450 APOB 338 2 21136495 NM_000384 NP_000375 C/T T4484M minus 20418822 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34930 rs12713450 APOB 338 2 21136495 NM_000384 NP_000375 C/T T4484M minus 20419024 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34931 rs12713540 APOB 338 2 21139991 NM_000384 NP_000375 A/T S3801T minus 20418887 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34932 rs12713540 APOB 338 2 21139991 NM_000384 NP_000375 A/T S3801T minus 20418896 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34933 rs12713559 APOB 338 2 21140720 NM_000384 NP_000375 C/T R3558C minus 20418876 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34934 rs12713559 APOB 338 2 21140720 NM_000384 NP_000375 C/T R3558C minus 20418899 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34935 rs12713675 APOB 338 2 21144025 NM_000384 NP_000375 A/C A2456D minus 20419060 889 PHARMGKB_PARC PA128275074 94 0.04 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34936 rs12713675 APOB 338 2 21144025 NM_000384 NP_000375 A/C A2456D minus 20419071 889 PHARMGKB_PARC PA128275074 94 0.04 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34937 rs12713681 APOB 338 2 21144497 NM_000384 NP_000375 C/G D2299H minus 20418834 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34938 rs12713681 APOB 338 2 21144497 NM_000384 NP_000375 C/G D2299H minus 20419059 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34939 rs12713843 APOB 338 2 21150019 NM_000384 NP_000375 A/G R1128H minus 20418832 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34940 rs12713843 APOB 338 2 21150019 NM_000384 NP_000375 A/G R1128H minus 20418893 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34941 rs12713844 APOB 338 2 21150065 NM_000384 NP_000375 C/G D1113H minus 20418833 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34942 rs12713844 APOB 338 2 21150065 NM_000384 NP_000375 C/G D1113H minus 20418894 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34943 rs12714097 APOB 338 2 21157541 NM_000384 NP_000375 C/T P877L minus 20418846 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34944 rs12714097 APOB 338 2 21157541 NM_000384 NP_000375 C/T P877L minus 20419046 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34945 rs12714192 APOB 338 2 21161334 NM_000384 NP_000375 A/C T741N minus 20418972 889 PHARMGKB_PARC PA128275074 94 0.09 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34946 rs12714192 APOB 338 2 21161334 NM_000384 NP_000375 A/C T741N minus 20419057 889 PHARMGKB_PARC PA128275074 94 0.09 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34947 rs12714214 APOB 338 2 21163019 NM_000384 NP_000375 C/T P554L minus 20418964 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34948 rs12714214 APOB 338 2 21163019 NM_000384 NP_000375 C/T P554L minus 20418977 889 PHARMGKB_PARC PA128275074 94 0.02 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34949 rs12714225 APOB 338 2 21167007 NM_000384 NP_000375 C/T I408T minus 20418914 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34950 rs12714225 APOB 338 2 21167007 NM_000384 NP_000375 C/T I408T minus 20419006 889 PHARMGKB_PARC PA128275074 94 0.01 121 "by cluster,freq" 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34951 rs12719860 ZNF454 285676 5 178324508 NM_182594 NP_872400 A/C D166A plus 23344325 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 "by doubleHit,freq,cluster" 5q35.3 zinc finger protein 454 34952 rs12719860 ZNF454 285676 5 178324508 NM_182594 NP_872400 A/C D166A plus 23344325 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.4 123 "by doubleHit,freq,cluster" 5q35.3 zinc finger protein 454 34953 rs12719860 ZNF454 285676 5 178324508 NM_182594 NP_872400 A/C D166A plus 23344325 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 "by doubleHit,freq,cluster" 5q35.3 zinc finger protein 454 34954 rs12720356 TYK2 7297 19 10330975 NM_003331 NP_003322 G/T I684S minus 20399256 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 46 0.09 121 by freq 19p13.2 tyrosine kinase 2 34955 rs12720445 KCNA5 3741 12 5025307 NM_002234 NP_002225 A/G R578K plus 20399361 1202 PHARMGKB_PAT PA129993432 376 0.01 121 by freq 12p13 "potassium voltage-gated channel, shaker-related subfamily, member 5" 34956 rs12720474 ADORA2B 136 17 15789391 NM_000676 NP_000667 C/T A35V plus 20418312 1225 PHARMGKB_APP PA129946492 106 0.03 121 by freq 17p12-p11.2 adenosine A2b receptor 34957 rs12720855 APOB 338 2 21141512 NM_000384 NP_000375 C/T S3294P minus 20419074 889 PHARMGKB_PARC PA128275074 94 0.04 121 by freq 2p24-p23 apolipoprotein B (including Ag(x) antigen) 34958 rs12721427 COL2A1 1280 12 46654808 NM_001844 NP_001835 A/G V1331I minus 24611254 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34959 rs12721427 COL2A1 1280 12 46654808 NM_001844 NP_001835 A/G V1331I minus 24611254 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34960 rs12721427 COL2A1 1280 12 46654808 NM_001844 NP_001835 A/G V1331I minus 24611254 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34961 rs12721427 COL2A1 1280 12 46654808 NM_033150 NP_149162 A/G V1262I minus 24611254 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34962 rs12721427 COL2A1 1280 12 46654808 NM_033150 NP_149162 A/G V1262I minus 24611254 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34963 rs12721427 COL2A1 1280 12 46654808 NM_033150 NP_149162 A/G V1262I minus 24611254 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.11-q13.2 "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)" 34964 rs12721461 GNAO1 2775 16 54928206 NM_020988 NP_066268 C/T V219A plus 20421185 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 46 0.15 121 by freq 16q13 "guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O" 34965 rs12721461 GNAO1 2775 16 54928206 NM_138736 NP_620073 C/T V219A plus 20421185 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 46 0.15 121 by freq 16q13 "guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O" 34966 rs12721497 CCR9 10803 3 45918134 NM_006641 NP_006632 A/G M272V plus 20421258 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 92 0.02 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34967 rs12721497 CCR9 10803 3 45918134 NM_006641 NP_006632 A/G M272V plus 23232722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34968 rs12721497 CCR9 10803 3 45918134 NM_006641 NP_006632 A/G M272V plus 23232722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34969 rs12721497 CCR9 10803 3 45918134 NM_006641 NP_006632 A/G M272V plus 23232722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34970 rs12721497 CCR9 10803 3 45918134 NM_031200 NP_112477 A/G M284V plus 20421258 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 92 0.02 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34971 rs12721497 CCR9 10803 3 45918134 NM_031200 NP_112477 A/G M284V plus 23232722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34972 rs12721497 CCR9 10803 3 45918134 NM_031200 NP_112477 A/G M284V plus 23232722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34973 rs12721497 CCR9 10803 3 45918134 NM_031200 NP_112477 A/G M284V plus 23232722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 3p21.3 chemokine (C-C motif) receptor 9 34974 rs12721512 CSF1 1435 1 110179462 NM_000757 NP_000748 C/T A531V plus 20421280 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 54 0.04 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34975 rs12721512 CSF1 1435 1 110179462 NM_172210 NP_757349 C/T A415V plus 20421280 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 54 0.04 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34976 rs12721512 CSF1 1435 1 110179462 NM_172211 NP_757350 C/T A233V plus 20421280 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 54 0.04 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34977 rs12721512 CSF1 1435 1 110179462 NM_172212 NP_757351 C/T A531V plus 20421280 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 54 0.04 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34978 rs12721516 CSF1 1435 1 110178772 NM_000757 NP_000748 C/T S496F plus 20421291 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 64 0.05 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34979 rs12721516 CSF1 1435 1 110178772 NM_172210 NP_757349 C/T S380F plus 20421291 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 64 0.05 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34980 rs12721516 CSF1 1435 1 110178772 NM_172211 NP_757350 C/T S198F plus 20421291 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 64 0.05 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34981 rs12721516 CSF1 1435 1 110178772 NM_172212 NP_757351 C/T S496F plus 20421291 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 64 0.05 121 by freq 1p21-p13 colony stimulating factor 1 (macrophage) 34982 rs12721523 GNA12 2768 7 2544478 NM_007353 NP_031379 C/T F242L minus 20421307 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 46 0.04 121 by freq 7p22-p21 guanine nucleotide binding protein (G protein) alpha 12 34983 rs12721529 GNA12 2768 7 2544214 NM_007353 NP_031379 C/T Y330H minus 20421314 1238 PHARMGKB_PHAT PA127362700 American Indians and Alaskan Natives 56 0.04 121 by freq 7p22-p21 guanine nucleotide binding protein (G protein) alpha 12 34984 rs12721607 NR1I2 8856 3 121008893 NM_003889 NP_003880 A/G G36R plus 20421442 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.04 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34985 rs12721607 NR1I2 8856 3 121008893 NM_022002 NP_071285 A/G G75R plus 20421442 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.04 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34986 rs12721607 NR1I2 8856 3 121008893 NM_033013 NP_148934 A/G G36R plus 20421442 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.04 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34987 rs12721613 NR1I2 8856 3 121008866 NM_003889 NP_003880 C/T P27S plus 20421453 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.03 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34988 rs12721613 NR1I2 8856 3 121008866 NM_022002 NP_071285 C/T P66S plus 20421453 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.03 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34989 rs12721613 NR1I2 8856 3 121008866 NM_033013 NP_148934 C/T P27S plus 20421453 1240 PHARMGKB_PAAR-SJCRH PA130405423 190 0.03 121 by freq 3q12-q13.3 "nuclear receptor subfamily 1, group I, member 2" 34990 rs12721627 CYP3A4 1576 7 99010744 NM_017460 NP_059488 C/G T185S minus 20421474 1241 PHARMGKB_PAAR-SJCRH PA130249474 372 0.01 121 by freq 7q21.1 "cytochrome P450, family 3, subfamily A, polypeptide 4" 34991 rs12722058 HLA-DQA1 3117 6 32717191 NM_002122 NP_002113 A/G R70Q plus 24814207 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 6p21.3 "major histocompatibility complex, class II, DQ alpha 1" 34992 rs12731961 CAPN9 10753 1 227230048 NM_006615 NP_006606 C/T R522W plus 23236844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 34993 rs12731961 CAPN9 10753 1 227230048 NM_006615 NP_006606 C/T R522W plus 23236844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.36 123 "by cluster,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 34994 rs12731961 CAPN9 10753 1 227230048 NM_006615 NP_006606 C/T R522W plus 23236844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.18 123 "by cluster,freq" 1q42.11-q42.3 calpain 9 (nCL-4) 34995 rs12747833 SLC6A17 388662 1 110428553 XM_371280 XP_371280 C/T R30X plus 24278794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 1p13.2 "solute carrier family 6 (neurotransmitter transporter), member 17" 34996 rs12747833 SLC6A17 388662 1 110428553 XM_371280 XP_371280 C/T R30X plus 24278794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1p13.2 "solute carrier family 6 (neurotransmitter transporter), member 17" 34997 rs12747833 SLC6A17 388662 1 110428553 XM_371280 XP_371280 C/T R30X plus 24278794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 1p13.2 "solute carrier family 6 (neurotransmitter transporter), member 17" 34998 rs12748250 LAMB3 3914 1 206184724 NM_000228 NP_000219 A/T M852L plus 24634618 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1q32 "laminin, beta 3" 34999 rs12748250 LAMB3 3914 1 206184724 NM_000228 NP_000219 A/T M852L plus 24634618 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 1q32 "laminin, beta 3" 35000 rs12748250 LAMB3 3914 1 206184724 NM_000228 NP_000219 A/T M852L plus 24634618 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1q32 "laminin, beta 3" 35001 rs12754818 ELTD1 64123 1 79104777 XM_371262 XP_371262 A/C V441L plus 23158143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by doubleHit,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 35002 rs12754818 ELTD1 64123 1 79104777 XM_371262 XP_371262 A/C V441L plus 23158143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 "by doubleHit,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 35003 rs12754818 ELTD1 64123 1 79104777 XM_371262 XP_371262 A/C V441L plus 23158143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq,cluster" 1p33-p32 "EGF, latrophilin and seven transmembrane domain containing 1" 35004 rs12764004 BMS1L 9790 10 42639203 NM_014753 NP_055568 A/G V1141I plus 20628127 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.2 121 "HapMap,freq" 10q11.21 "BMS1-like, ribosome assembly protein (yeast)" 35005 rs12765679 TACC2 10579 10 123893123 NM_206862 NP_996744 A/G E1916K plus 24570998 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 35006 rs12765679 TACC2 10579 10 123893123 NM_206862 NP_996744 A/G E1916K plus 24570998 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 35007 rs12765679 TACC2 10579 10 123893123 NM_206862 NP_996744 A/G E1916K plus 24570998 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 10q26 "transforming, acidic coiled-coil containing protein 2" 35008 rs12770335 SGPL1 8879 10 72274269 NM_003901 NP_003892 G/T V21L plus 20661200 885 TSC-CSHL HapMap-CEPH-30-trios 120 0.14 121 "HapMap,freq" 10q21 sphingosine-1-phosphate lyase 1 35009 rs12785840 OR5R1 219479 11 55941800 XM_166831 XP_166831 A/G I162T plus 24568987 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 35010 rs12785840 OR5R1 219479 11 55941800 XM_166831 XP_166831 A/G I162T plus 24568987 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 35011 rs12785840 OR5R1 219479 11 55941800 XM_166831 XP_166831 A/G I162T plus 24568987 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 35012 rs12793348 PANX1 24145 11 93552684 NM_015368 NP_056183 A/G I272V plus 24109187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 "by cluster,freq" 11q21 pannexin 1 35013 rs12793348 PANX1 24145 11 93552684 NM_015368 NP_056183 A/G I272V plus 24109187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 11q21 pannexin 1 35014 rs12793348 PANX1 24145 11 93552684 NM_015368 NP_056183 A/G I272V plus 24109187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by cluster,freq" 11q21 pannexin 1 35015 rs12828016 PRKWNK1 65125 12 868626 NM_018979 NP_061852 G/T M1808I plus 23775762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 35016 rs12828016 PRKWNK1 65125 12 868626 NM_018979 NP_061852 G/T M1808I plus 23775762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 "by doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 35017 rs12828016 PRKWNK1 65125 12 868626 NM_018979 NP_061852 G/T M1808I plus 23775762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by doubleHit,freq,cluster" 12p13.3 "protein kinase, lysine deficient 1" 35018 rs12833456 K6IRS2 140807 12 51272454 NM_080747 NP_542785 C/T Y264C plus 23955909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 12q13.13 keratin protein K6irs 35019 rs12833456 K6IRS2 140807 12 51272454 NM_080747 NP_542785 C/T Y264C plus 23955909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 "by cluster,freq" 12q13.13 keratin protein K6irs 35020 rs12833456 K6IRS2 140807 12 51272454 NM_080747 NP_542785 C/T Y264C plus 23955909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 "by cluster,freq" 12q13.13 keratin protein K6irs 35021 rs12863903 UGCGL2 55757 13 95436652 NM_020121 NP_064506 C/T A323T plus 24718288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35022 rs12863903 UGCGL2 55757 13 95436652 NM_020121 NP_064506 C/T A323T plus 24718288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35023 rs12863903 UGCGL2 55757 13 95436652 NM_020121 NP_064506 C/T A323T plus 24718288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35024 rs12876018 UGCGL2 55757 13 95338205 NM_020121 NP_064506 G/T M994L plus 24718276 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.46 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35025 rs12876018 UGCGL2 55757 13 95338205 NM_020121 NP_064506 G/T M994L plus 24718276 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35026 rs12876018 UGCGL2 55757 13 95338205 NM_020121 NP_064506 G/T M994L plus 24718276 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 13q32.1-q32.2 UDP-glucose ceramide glucosyltransferase-like 2 35027 rs12881815 SYNE2 23224 14 63674348 NM_015180 NP_055995 A/G E4912K plus 24705465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35028 rs12881815 SYNE2 23224 14 63674348 NM_015180 NP_055995 A/G E4912K plus 24705465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35029 rs12881815 SYNE2 23224 14 63674348 NM_015180 NP_055995 A/G E4912K plus 24705465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35030 rs12881815 SYNE2 23224 14 63674348 NM_182914 NP_878918 A/G E1298K plus 24705465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35031 rs12881815 SYNE2 23224 14 63674348 NM_182914 NP_878918 A/G E1298K plus 24705465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35032 rs12881815 SYNE2 23224 14 63674348 NM_182914 NP_878918 A/G E1298K plus 24705465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 35033 rs12882191 NIN 51199 14 50294124 NM_016350 NP_057434 G/T Q1131P plus 24125830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35034 rs12882191 NIN 51199 14 50294124 NM_016350 NP_057434 G/T Q1131P plus 24125830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35035 rs12882191 NIN 51199 14 50294124 NM_016350 NP_057434 G/T Q1131P plus 24125830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35036 rs12882191 NIN 51199 14 50294124 NM_020921 NP_065972 G/T Q1108P plus 24125830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35037 rs12882191 NIN 51199 14 50294124 NM_020921 NP_065972 G/T Q1108P plus 24125830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35038 rs12882191 NIN 51199 14 50294124 NM_020921 NP_065972 G/T Q1108P plus 24125830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35039 rs12882191 NIN 51199 14 50294124 NM_182944 NP_891989 G/T Q1108P plus 24125830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35040 rs12882191 NIN 51199 14 50294124 NM_182944 NP_891989 G/T Q1108P plus 24125830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35041 rs12882191 NIN 51199 14 50294124 NM_182944 NP_891989 G/T Q1108P plus 24125830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35042 rs12882191 NIN 51199 14 50294124 NM_182945 NP_891990 G/T Q1108P plus 24125830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35043 rs12882191 NIN 51199 14 50294124 NM_182945 NP_891990 G/T Q1108P plus 24125830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35044 rs12882191 NIN 51199 14 50294124 NM_182945 NP_891990 G/T Q1108P plus 24125830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35045 rs12882191 NIN 51199 14 50294124 NM_182946 NP_891991 G/T Q1125P plus 24125830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35046 rs12882191 NIN 51199 14 50294124 NM_182946 NP_891991 G/T Q1125P plus 24125830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35047 rs12882191 NIN 51199 14 50294124 NM_182946 NP_891991 G/T Q1125P plus 24125830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 "by cluster,freq" 14q22.1 ninein (GSK3B interacting protein) 35048 rs12891553 OR11H6 122748 14 19762028 XM_063315 XP_063315 C/T I107T plus 24720741 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 35049 rs12891553 OR11H6 122748 14 19762028 XM_063315 XP_063315 C/T I107T plus 24720741 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 35050 rs12891553 OR11H6 122748 14 19762028 XM_063315 XP_063315 C/T I107T plus 24720741 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by doubleHit,freq" 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 35051 rs12895249 PAPLN 89932 14 72782675 XM_370765 XP_370765 C/T Y311H plus 24606455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 35052 rs12895249 PAPLN 89932 14 72782675 XM_370765 XP_370765 C/T Y311H plus 24606455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 35053 rs12895249 PAPLN 89932 14 72782675 XM_370765 XP_370765 C/T Y311H plus 24606455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 35054 rs12897422 AP1G2 8906 14 23102867 NM_003917 NP_003908 A/G S377F plus 24709391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35055 rs12897422 AP1G2 8906 14 23102867 NM_003917 NP_003908 A/G S377F plus 24709391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35056 rs12897422 AP1G2 8906 14 23102867 NM_003917 NP_003908 A/G S377F plus 24709391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35057 rs12897422 AP1G2 8906 14 23102867 NM_080545 NP_536806 A/G S377F plus 24709391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35058 rs12897422 AP1G2 8906 14 23102867 NM_080545 NP_536806 A/G S377F plus 24709391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35059 rs12897422 AP1G2 8906 14 23102867 NM_080545 NP_536806 A/G S377F plus 24709391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 14q11.2 "adaptor-related protein complex 1, gamma 2 subunit" 35060 rs12898290 TRPM1 4308 15 29081635 NM_002420 NP_002411 A/T H1428Q plus 23661353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 35061 rs12898290 TRPM1 4308 15 29081635 NM_002420 NP_002411 A/T H1428Q plus 23661353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 35062 rs12898290 TRPM1 4308 15 29081635 NM_002420 NP_002411 A/T H1428Q plus 23661353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 35063 rs12907567 VPS13C 54832 15 60001899 NM_017684 NP_060154 C/T V2279M plus 24225342 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 35064 rs12907567 VPS13C 54832 15 60001899 NM_017684 NP_060154 C/T V2279M plus 24225342 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 35065 rs12907567 VPS13C 54832 15 60001899 NM_017684 NP_060154 C/T V2279M plus 24225342 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 15q21.3 vacuolar protein sorting 13C (yeast) 35066 rs12911738 AF15Q14 57082 15 38690976 NM_020380 NP_065113 A/G T87A plus 24037070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35067 rs12911738 AF15Q14 57082 15 38690976 NM_020380 NP_065113 A/G T87A plus 24037070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35068 rs12911738 AF15Q14 57082 15 38690976 NM_020380 NP_065113 A/G T87A plus 24037070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35069 rs12911738 AF15Q14 57082 15 38690976 NM_144508 NP_653091 A/G T87A plus 24037070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35070 rs12911738 AF15Q14 57082 15 38690976 NM_144508 NP_653091 A/G T87A plus 24037070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35071 rs12911738 AF15Q14 57082 15 38690976 NM_144508 NP_653091 A/G T87A plus 24037070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35072 rs12911738 AF15Q14 57082 15 38690976 NM_170589 NP_733468 A/G T113A plus 24037070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35073 rs12911738 AF15Q14 57082 15 38690976 NM_170589 NP_733468 A/G T113A plus 24037070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35074 rs12911738 AF15Q14 57082 15 38690976 NM_170589 NP_733468 A/G T113A plus 24037070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 15q14 AF15q14 protein 35075 rs12931217 PKD1L2 114780 16 79757021 NM_182740 NP_877417 C/T T1048A plus 24505725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 16q23.2 polycystic kidney disease 1-like 2 35076 rs12931217 PKD1L2 114780 16 79757021 NM_182740 NP_877417 C/T T1048A plus 24505725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 16q23.2 polycystic kidney disease 1-like 2 35077 rs12931217 PKD1L2 114780 16 79757021 NM_182740 NP_877417 C/T T1048A plus 24505725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 by freq 16q23.2 polycystic kidney disease 1-like 2 35078 rs12931472 ABCC6 368 16 16188508 NM_001171 NP_001162 A/G V614A plus 23543392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 35079 rs12931472 ABCC6 368 16 16188508 NM_001171 NP_001162 A/G V614A plus 23543392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 35080 rs12931472 ABCC6 368 16 16188508 NM_001171 NP_001162 A/G V614A plus 23543392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 "by doubleHit,freq,cluster" 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 6" 35081 rs12933084 WFDC1 58189 16 82918034 NM_021197 NP_067020 A/G K217R plus 23509498 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by doubleHit,freq,cluster" 16q24.3 WAP four-disulfide core domain 1 35082 rs12933084 WFDC1 58189 16 82918034 NM_021197 NP_067020 A/G K217R plus 23509498 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 "by doubleHit,freq,cluster" 16q24.3 WAP four-disulfide core domain 1 35083 rs12933084 WFDC1 58189 16 82918034 NM_021197 NP_067020 A/G K217R plus 23509498 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by doubleHit,freq,cluster" 16q24.3 WAP four-disulfide core domain 1 35084 rs12936935 ODF4 146852 17 8184510 NM_153007 NP_694552 A/G Y139C plus 24209703 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by doubleHit,freq" 17p13.1 outer dense fiber of sperm tails 4 35085 rs12936935 ODF4 146852 17 8184510 NM_153007 NP_694552 A/G Y139C plus 24209703 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by doubleHit,freq" 17p13.1 outer dense fiber of sperm tails 4 35086 rs12936935 ODF4 146852 17 8184510 NM_153007 NP_694552 A/G Y139C plus 24209703 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq" 17p13.1 outer dense fiber of sperm tails 4 35087 rs12939997 OR3A3 8392 17 3271470 NM_012373 NP_036505 A/G M287V plus 23623341 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 35088 rs12939997 OR3A3 8392 17 3271470 NM_012373 NP_036505 A/G M287V plus 23623341 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 35089 rs12939997 OR3A3 8392 17 3271470 NM_012373 NP_036505 A/G M287V plus 23623341 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 17p13.3 "olfactory receptor, family 3, subfamily A, member 3" 35090 rs12951399 KRT25A 147183 17 36164889 NM_181534 NP_853512 A/G S54L plus 24559499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 by freq 17q21.2 keratin 25A 35091 rs12951399 KRT25A 147183 17 36164889 NM_181534 NP_853512 A/G S54L plus 24559499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 17q21.2 keratin 25A 35092 rs12951399 KRT25A 147183 17 36164889 NM_181534 NP_853512 A/G S54L plus 24559499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 17q21.2 keratin 25A 35093 rs12968116 ATP8B1 5205 18 53473500 NM_005603 NP_005594 C/T R952Q plus 24691328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 18q21 "ATPase, Class I, type 8B, member 1" 35094 rs12968116 ATP8B1 5205 18 53473500 NM_005603 NP_005594 C/T R952Q plus 24691328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q21 "ATPase, Class I, type 8B, member 1" 35095 rs12968116 ATP8B1 5205 18 53473500 NM_005603 NP_005594 C/T R952Q plus 24691328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q21 "ATPase, Class I, type 8B, member 1" 35096 rs12972658 ZNF541 84215 19 52734788 NM_032255 NP_115631 C/T G374R plus 24072560 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 "by cluster,freq" 19q13.33 zinc finger protein 541 35097 rs12972658 ZNF541 84215 19 52734788 NM_032255 NP_115631 C/T G374R plus 24072560 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19q13.33 zinc finger protein 541 35098 rs12972658 ZNF541 84215 19 52734788 NM_032255 NP_115631 C/T G374R plus 24072560 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 "by cluster,freq" 19q13.33 zinc finger protein 541 35099 rs12974842 ZNF100 163227 19 21740410 NM_173531 NP_775802 C/T M8V plus 24679917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 19p13.11 zinc finger protein 100 35100 rs12974842 ZNF100 163227 19 21740410 NM_173531 NP_775802 C/T M8V plus 24679917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19p13.11 zinc finger protein 100 35101 rs12974842 ZNF100 163227 19 21740410 NM_173531 NP_775802 C/T M8V plus 24679917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19p13.11 zinc finger protein 100 35102 rs12990449 LRP1B 53353 2 142401642 NM_018557 NP_061027 C/T Q48R plus 23888425 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 "by cluster,freq" 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 35103 rs12990449 LRP1B 53353 2 142401642 NM_018557 NP_061027 C/T Q48R plus 23888425 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by cluster,freq" 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 35104 rs12990449 LRP1B 53353 2 142401642 NM_018557 NP_061027 C/T Q48R plus 23888425 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 2q21.2 low density lipoprotein-related protein 1B (deleted in tumors) 35105 rs12992066 PROM2 150696 2 95368959 NM_144707 NP_653308 A/G Q508R plus 23888303 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 "by doubleHit,freq,cluster" 2q11.2 prominin 2 35106 rs12992066 PROM2 150696 2 95368959 NM_144707 NP_653308 A/G Q508R plus 23888303 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by doubleHit,freq,cluster" 2q11.2 prominin 2 35107 rs12992066 PROM2 150696 2 95368959 NM_144707 NP_653308 A/G Q508R plus 23888303 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by doubleHit,freq,cluster" 2q11.2 prominin 2 35108 rs13006529 CASP10 843 2 201907965 NM_001230 NP_001221 A/T L479I plus 24379105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35109 rs13006529 CASP10 843 2 201907965 NM_001230 NP_001221 A/T L479I plus 24379105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35110 rs13006529 CASP10 843 2 201907965 NM_001230 NP_001221 A/T L479I plus 24379105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35111 rs13006529 CASP10 843 2 201907965 NM_032977 NP_116759 A/T L522I plus 24379105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35112 rs13006529 CASP10 843 2 201907965 NM_032977 NP_116759 A/T L522I plus 24379105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35113 rs13006529 CASP10 843 2 201907965 NM_032977 NP_116759 A/T L522I plus 24379105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 2q33-q34 "caspase 10, apoptosis-related cysteine protease" 35114 rs13014235 ALS2CR12 130540 2 202040998 NM_139163 NP_631902 C/G V43L plus 24646639 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 by freq 2q33.2 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12" 35115 rs13014235 ALS2CR12 130540 2 202040998 NM_139163 NP_631902 C/G V43L plus 24646639 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 2q33.2 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12" 35116 rs13014235 ALS2CR12 130540 2 202040998 NM_139163 NP_631902 C/G V43L plus 24646639 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 2q33.2 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12" 35117 rs13025959 MYO7B 4648 2 128105092 XM_291001 XP_291001 C/G E500D plus 24628095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 2q21.1 myosin VIIB 35118 rs13025959 MYO7B 4648 2 128105092 XM_291001 XP_291001 C/G E500D plus 24628095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2q21.1 myosin VIIB 35119 rs13025959 MYO7B 4648 2 128105092 XM_291001 XP_291001 C/G E500D plus 24628095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 by freq 2q21.1 myosin VIIB 35120 rs13036061 ETAA16 54465 2 67542127 NM_019002 NP_061875 C/T M221T plus 23191999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 35121 rs13036061 ETAA16 54465 2 67542127 NM_019002 NP_061875 C/T M221T plus 23191999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.21 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 35122 rs13036061 ETAA16 54465 2 67542127 NM_019002 NP_061875 C/T M221T plus 23191999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 2p13-p15 ETAA16 protein 35123 rs13060847 CHL1 10752 3 366100 NM_006614 NP_006605 A/G T303A plus 23185557 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 35124 rs13060847 CHL1 10752 3 366100 NM_006614 NP_006605 A/G T303A plus 23185557 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 35125 rs13060847 CHL1 10752 3 366100 NM_006614 NP_006605 A/G T303A plus 23185557 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 3p26.1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 35126 rs13072536 ITIH4 3700 3 52836251 NM_002218 NP_002209 A/T I85N plus 23310839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 35127 rs13072536 ITIH4 3700 3 52836251 NM_002218 NP_002209 A/T I85N plus 23310839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 35128 rs13072536 ITIH4 3700 3 52836251 NM_002218 NP_002209 A/T I85N plus 23310839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 "by cluster,freq" 3p21-p14 inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein) 35129 rs13096789 TA-KRP 84541 3 67137339 NM_032505 NP_115894 C/T C394R plus 24309129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 3p14 T-cell activation kelch repeat protein 35130 rs13096789 TA-KRP 84541 3 67137339 NM_032505 NP_115894 C/T C394R plus 24309129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p14 T-cell activation kelch repeat protein 35131 rs13096789 TA-KRP 84541 3 67137339 NM_032505 NP_115894 C/T C394R plus 24309129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 3p14 T-cell activation kelch repeat protein 35132 rs13106574 SOAT 345274 4 88127108 NM_197965 NP_932069 C/T I114V plus 23225630 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 "by cluster,freq" 4q22.1 sodium-dependent organic anion transporter 35133 rs13106574 SOAT 345274 4 88127108 NM_197965 NP_932069 C/T I114V plus 23225630 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 "by cluster,freq" 4q22.1 sodium-dependent organic anion transporter 35134 rs13106574 SOAT 345274 4 88127108 NM_197965 NP_932069 C/T I114V plus 23225630 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4q22.1 sodium-dependent organic anion transporter 35135 rs13107325 SLC39A8 64116 4 103545887 NM_022154 NP_071437 C/T A391T plus 24413604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 4q22-q24 "solute carrier family 39 (zinc transporter), member 8" 35136 rs13107325 SLC39A8 64116 4 103545887 NM_022154 NP_071437 C/T A391T plus 24413604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 4q22-q24 "solute carrier family 39 (zinc transporter), member 8" 35137 rs13107325 SLC39A8 64116 4 103545887 NM_022154 NP_071437 C/T A391T plus 24413604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q22-q24 "solute carrier family 39 (zinc transporter), member 8" 35138 rs13126069 ESSPL 345062 4 152570091 NM_183375 NP_899231 C/T R298C plus 24663625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 4q31.23 epidermis-specific serine protease-like protein 35139 rs13126069 ESSPL 345062 4 152570091 NM_183375 NP_899231 C/T R298C plus 24663625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 4q31.23 epidermis-specific serine protease-like protein 35140 rs13126069 ESSPL 345062 4 152570091 NM_183375 NP_899231 C/T R298C plus 24663625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 by freq 4q31.23 epidermis-specific serine protease-like protein 35141 rs13144371 IBSP 3381 4 89089925 NM_004967 NP_004958 A/G D213G plus 24294794 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 35142 rs13144371 IBSP 3381 4 89089925 NM_004967 NP_004958 A/G D213G plus 24294794 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 35143 rs13144371 IBSP 3381 4 89089925 NM_004967 NP_004958 A/G D213G plus 24294794 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.17 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 35144 rs13148353 LAK 80216 4 113710232 NM_025144 NP_079420 A/G H642R plus 23721698 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 35145 rs13148353 LAK 80216 4 113710232 NM_025144 NP_079420 A/G H642R plus 23721698 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 35146 rs13148353 LAK 80216 4 113710232 NM_025144 NP_079420 A/G H642R plus 23721698 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 35147 rs13148353 LAK 80216 4 113710232 NM_025144 NP_079420 A/G H642R plus 24783114 1303 SEQUENOM CEPH CEPH (92) 184 0.36 123 "by cluster,freq" 4q26 lymphocyte alpha-kinase 35148 rs13157656 C7 730 5 41000609 NM_000587 NP_000578 A/C T587P plus 24416525 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 5p13 complement component 7 35149 rs13157656 C7 730 5 41000609 NM_000587 NP_000578 A/C T587P plus 24416525 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5p13 complement component 7 35150 rs13157656 C7 730 5 41000609 NM_000587 NP_000578 A/C T587P plus 24416525 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5p13 complement component 7 35151 rs13166360 ADCY2 108 5 7573881 NM_020546 NP_065433 G/T V142L plus 24313214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 5p15.3 adenylate cyclase 2 (brain) 35152 rs13166360 ADCY2 108 5 7573881 NM_020546 NP_065433 G/T V142L plus 24313214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15.3 adenylate cyclase 2 (brain) 35153 rs13166360 ADCY2 108 5 7573881 NM_020546 NP_065433 G/T V142L plus 24313214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p15.3 adenylate cyclase 2 (brain) 35154 rs13194995 DST 667 6 56578510 NM_020388 NP_065121 A/T T2422S plus 24379443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35155 rs13194995 DST 667 6 56578510 NM_020388 NP_065121 A/T T2422S plus 24379443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35156 rs13194995 DST 667 6 56578510 NM_020388 NP_065121 A/T T2422S plus 24379443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 "by doubleHit,freq" 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35157 rs13231277 PKD1L1 168507 7 47613627 NM_138295 NP_612152 C/T A2685T plus 23744212 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 7p12.3 polycystic kidney disease 1 like 1 35158 rs13231277 PKD1L1 168507 7 47613627 NM_138295 NP_612152 C/T A2685T plus 23744212 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 7p12.3 polycystic kidney disease 1 like 1 35159 rs13231277 PKD1L1 168507 7 47613627 NM_138295 NP_612152 C/T A2685T plus 23744212 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 7p12.3 polycystic kidney disease 1 like 1 35160 rs13235235 OR2F2 135948 7 143070805 XM_069623 XP_069623 C/T Y278H plus 23371207 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.24 123 by freq 7q35 "olfactory receptor, family 2, subfamily F, member 2" 35161 rs13235235 OR2F2 135948 7 143070805 XM_069623 XP_069623 C/T Y278H plus 23371207 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 by freq 7q35 "olfactory receptor, family 2, subfamily F, member 2" 35162 rs13235235 OR2F2 135948 7 143070805 XM_069623 XP_069623 C/T Y278H plus 23371207 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q35 "olfactory receptor, family 2, subfamily F, member 2" 35163 rs13243961 NUPL2 11097 7 23013503 NM_007342 NP_031368 A/G D391N plus 24397833 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 7p15 nucleoporin like 2 35164 rs13243961 NUPL2 11097 7 23013503 NM_007342 NP_031368 A/G D391N plus 24397833 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7p15 nucleoporin like 2 35165 rs13243961 NUPL2 11097 7 23013503 NM_007342 NP_031368 A/G D391N plus 24397833 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 7p15 nucleoporin like 2 35166 rs13255694 ADAM7 8756 8 24395569 NM_003817 NP_003808 A/G V244M plus 24500075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 8p21.2 a disintegrin and metalloproteinase domain 7 35167 rs13255694 ADAM7 8756 8 24395569 NM_003817 NP_003808 A/G V244M plus 24500075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 8p21.2 a disintegrin and metalloproteinase domain 7 35168 rs13255694 ADAM7 8756 8 24395569 NM_003817 NP_003808 A/G V244M plus 24500075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 8p21.2 a disintegrin and metalloproteinase domain 7 35169 rs13259668 ADAM7 8756 8 24412708 NM_003817 NP_003808 A/C N638H plus 23509338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 7 35170 rs13259668 ADAM7 8756 8 24412708 NM_003817 NP_003808 A/C N638H plus 23509338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.38 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 7 35171 rs13259668 ADAM7 8756 8 24412708 NM_003817 NP_003808 A/C N638H plus 23509338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 "by doubleHit,freq,cluster" 8p21.2 a disintegrin and metalloproteinase domain 7 35172 rs13265557 CNGB3 54714 8 87729216 NM_019098 NP_061971 C/T I307V plus 24479499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35173 rs13265557 CNGB3 54714 8 87729216 NM_019098 NP_061971 C/T I307V plus 24479499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35174 rs13265557 CNGB3 54714 8 87729216 NM_019098 NP_061971 C/T I307V plus 24479499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35175 rs13266634 SLC30A8 169026 8 118253964 NM_173851 NP_776250 C/T R325W plus 24200061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35176 rs13266634 SLC30A8 169026 8 118253964 NM_173851 NP_776250 C/T R325W plus 24200061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35177 rs13266634 SLC30A8 169026 8 118253964 NM_173851 NP_776250 C/T R325W plus 24200061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35178 rs13306418 GYS1 2997 19 54173055 NM_002103 NP_002094 A/G M416V minus 24129553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 19q13.3 glycogen synthase 1 (muscle) 35179 rs13306418 GYS1 2997 19 54173055 NM_002103 NP_002094 A/G M416V minus 24129553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 "by cluster,freq" 19q13.3 glycogen synthase 1 (muscle) 35180 rs13306418 GYS1 2997 19 54173055 NM_002103 NP_002094 A/G M416V minus 24129553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 19q13.3 glycogen synthase 1 (muscle) 35181 rs13306731 SOAT1 6646 1 176052235 NM_003101 NP_003092 A/G Q526R plus 24152487 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 "by cluster,freq" 1q25 sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 35182 rs13306731 SOAT1 6646 1 176052235 NM_003101 NP_003092 A/G Q526R plus 24152487 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1q25 sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 35183 rs13306731 SOAT1 6646 1 176052235 NM_003101 NP_003092 A/G Q526R plus 24152487 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 "by cluster,freq" 1q25 sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 35184 rs13324142 SLC26A6 65010 3 48644451 NM_022911 NP_075062 C/T V185M plus 23278517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35185 rs13324142 SLC26A6 65010 3 48644451 NM_022911 NP_075062 C/T V185M plus 23278517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35186 rs13324142 SLC26A6 65010 3 48644451 NM_022911 NP_075062 C/T V185M plus 23278517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35187 rs13324142 SLC26A6 65010 3 48644451 NM_134263 NP_599025 C/T V185M plus 23278517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35188 rs13324142 SLC26A6 65010 3 48644451 NM_134263 NP_599025 C/T V185M plus 23278517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35189 rs13324142 SLC26A6 65010 3 48644451 NM_134263 NP_599025 C/T V185M plus 23278517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35190 rs13324142 SLC26A6 65010 3 48644451 NM_134426 NP_602298 C/T V185M plus 23278517 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35191 rs13324142 SLC26A6 65010 3 48644451 NM_134426 NP_602298 C/T V185M plus 23278517 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35192 rs13324142 SLC26A6 65010 3 48644451 NM_134426 NP_602298 C/T V185M plus 23278517 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 3p21.3 "solute carrier family 26, member 6" 35193 rs13328900 CD5 921 11 60649811 NM_014207 NP_055022 C/T A471V plus 24569941 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 "by doubleHit,freq" 11q13 CD5 antigen (p56-62) 35194 rs13328900 CD5 921 11 60649811 NM_014207 NP_055022 C/T A471V plus 24569941 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.32 123 "by doubleHit,freq" 11q13 CD5 antigen (p56-62) 35195 rs13328900 CD5 921 11 60649811 NM_014207 NP_055022 C/T A471V plus 24569941 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq" 11q13 CD5 antigen (p56-62) 35196 rs13332463 VPS35 55737 16 45254554 NM_018206 NP_060676 A/T C557S plus 22993792 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16q12 vacuolar protein sorting 35 (yeast) 35197 rs13336595 CNGB1 1258 16 56554461 NM_001297 NP_001288 C/T R100H plus 23663640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.25 123 "by cluster,freq" 16q13 cyclic nucleotide gated channel beta 1 35198 rs13336595 CNGB1 1258 16 56554461 NM_001297 NP_001288 C/T R100H plus 23663640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 "by cluster,freq" 16q13 cyclic nucleotide gated channel beta 1 35199 rs13336595 CNGB1 1258 16 56554461 NM_001297 NP_001288 C/T R100H plus 23663640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 "by cluster,freq" 16q13 cyclic nucleotide gated channel beta 1 35200 rs13337489 ABCC1 4363 16 16116184 NM_004996 NP_004987 C/G C1047S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35201 rs13337489 ABCC1 4363 16 16116184 NM_019862 NP_063915 C/G C988S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35202 rs13337489 ABCC1 4363 16 16116184 NM_019898 NP_063953 C/G C991S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35203 rs13337489 ABCC1 4363 16 16116184 NM_019899 NP_063954 C/G C932S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35204 rs13337489 ABCC1 4363 16 16116184 NM_019900 NP_063955 C/G C1047S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35205 rs13337489 ABCC1 4363 16 16116184 NM_019901 NP_063956 C/G C1005S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35206 rs13337489 ABCC1 4363 16 16116184 NM_019902 NP_063957 C/G C998S plus 22999329 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16p13.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" 35207 rs13338940 ZCCHC14 23174 16 86008808 NM_015144 NP_055959 C/G G244A plus 23000933 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 16q24.2 BDG-29 proten 35208 rs13339649 USP31 57478 16 23005923 NM_020718 NP_065769 A/G I538T plus 24398443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 "by doubleHit,freq" 16p12.3 ubiquitin specific protease 31 35209 rs13339649 USP31 57478 16 23005923 NM_020718 NP_065769 A/G I538T plus 24398443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 "by doubleHit,freq" 16p12.3 ubiquitin specific protease 31 35210 rs13339649 USP31 57478 16 23005923 NM_020718 NP_065769 A/G I538T plus 24398443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 "by doubleHit,freq" 16p12.3 ubiquitin specific protease 31 35211 rs13354726 ADAM19 8728 5 156859196 NM_033274 NP_150377 A/G A454V plus 23020526 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 HapMap 5q32-q33 a disintegrin and metalloproteinase domain 19 (meltrin beta) 35212 rs13360277 RAP80 51720 5 176303008 NM_016290 NP_057374 A/G C511R plus 23338193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by doubleHit,freq,cluster" 5q35.3 receptor associated protein 80 35213 rs13360277 RAP80 51720 5 176303008 NM_016290 NP_057374 A/G C511R plus 23338193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 "by doubleHit,freq,cluster" 5q35.3 receptor associated protein 80 35214 rs13360277 RAP80 51720 5 176303008 NM_016290 NP_057374 A/G C511R plus 23338193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 "by doubleHit,freq,cluster" 5q35.3 receptor associated protein 80 35215 rs13361416 C9 735 5 39367543 NM_001737 NP_001728 C/T I203V plus 23434720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by doubleHit,freq,cluster" 5p14-p12 complement component 9 35216 rs13361416 C9 735 5 39367543 NM_001737 NP_001728 C/T I203V plus 23434720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 "by doubleHit,freq,cluster" 5p14-p12 complement component 9 35217 rs13361416 C9 735 5 39367543 NM_001737 NP_001728 C/T I203V plus 23434720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by doubleHit,freq,cluster" 5p14-p12 complement component 9 35218 rs13381941 EFO1 114799 18 17408141 NM_052911 NP_443143 A/G T221M plus 24034465 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 "by doubleHit,freq,cluster" 18q11.2 establishment factor-like protein 35219 rs13381941 EFO1 114799 18 17408141 NM_052911 NP_443143 A/G T221M plus 24034465 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 "by doubleHit,freq,cluster" 18q11.2 establishment factor-like protein 35220 rs13381941 EFO1 114799 18 17408141 NM_052911 NP_443143 A/G T221M plus 24034465 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 "by doubleHit,freq,cluster" 18q11.2 establishment factor-like protein 35221 rs13383830 CD207 50489 2 70969961 NM_015717 NP_056532 C/T N288D plus 23217416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 35222 rs13383830 CD207 50489 2 70969961 NM_015717 NP_056532 C/T N288D plus 23217416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 35223 rs13383830 CD207 50489 2 70969961 NM_015717 NP_056532 C/T N288D plus 23217416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 2p13 "CD207 antigen, langerin" 35224 rs13406898 UGT1A3 54659 2 234420203 NM_019093 NP_061966 C/T T144I plus 23081645 885 TSC-CSHL HapMap-CEPH-30-trios 116 0.11 121 "HapMap,doubleHit,freq" 2q37 "UDP glycosyltransferase 1 family, polypeptide A3" 35225 rs13411834 DNAH7 56171 2 196499039 NM_018897 NP_061720 A/G L3319P plus 23721116 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35226 rs13411834 DNAH7 56171 2 196499039 NM_018897 NP_061720 A/G L3319P plus 23721116 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 "by cluster,freq" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35227 rs13411834 DNAH7 56171 2 196499039 NM_018897 NP_061720 A/G L3319P plus 23721116 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35228 rs13414011 DNAJC5G 285126 2 27412311 NM_173650 NP_775921 A/G H51R plus 23089701 885 TSC-CSHL HapMap-CEPH-30-trios 120 1 121 "HapMap,doubleHit" 2p23.3 "DnaJ (Hsp40) homolog, subfamily C, member 5 gamma" 35229 rs13419020 SSFA2 6744 2 182606370 NM_006751 NP_006742 C/T R833W plus 23201772 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 2q32.1 sperm specific antigen 2 35230 rs13419020 SSFA2 6744 2 182606370 NM_006751 NP_006742 C/T R833W plus 23201772 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 "by cluster,freq" 2q32.1 sperm specific antigen 2 35231 rs13419020 SSFA2 6744 2 182606370 NM_006751 NP_006742 C/T R833W plus 23201772 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 2q32.1 sperm specific antigen 2 35232 rs13434465 ACOX3 8310 4 8509019 NM_003501 NP_003492 C/T D497N plus 23253549 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 "by cluster,freq" 4p15.3 "acyl-Coenzyme A oxidase 3, pristanoyl" 35233 rs13434465 ACOX3 8310 4 8509019 NM_003501 NP_003492 C/T D497N plus 23253549 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 "by cluster,freq" 4p15.3 "acyl-Coenzyme A oxidase 3, pristanoyl" 35234 rs13434465 ACOX3 8310 4 8509019 NM_003501 NP_003492 C/T D497N plus 23253549 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 "by cluster,freq" 4p15.3 "acyl-Coenzyme A oxidase 3, pristanoyl" 35235 rs13447459 CDC7 8317 1 91679362 NM_003503 NP_003494 A/C Q23P plus 23133284 693 EGP_SNPS PDR90 NIHPDR 176 0.01 121 HapMap 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35236 rs13447459 CDC7 8317 1 91679362 NM_003503 NP_003494 A/C Q23P plus 23133284 885 TSC-CSHL HapMap-CEPH-30-trios 118 1 121 HapMap 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35237 rs13447539 CDC7 8317 1 91697849 NM_003503 NP_003494 A/G K441R plus 23133383 693 EGP_SNPS PDR90 NIHPDR 176 0.01 123 "by cluster,freq" 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35238 rs13447539 CDC7 8317 1 91697849 NM_003503 NP_003494 A/G K441R plus 23855888 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 "by cluster,freq" 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35239 rs13447539 CDC7 8317 1 91697849 NM_003503 NP_003494 A/G K441R plus 23855888 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 "by cluster,freq" 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35240 rs13447539 CDC7 8317 1 91697849 NM_003503 NP_003494 A/G K441R plus 23855888 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 "by cluster,freq" 1p22 CDC7 cell division cycle 7 (S. cerevisiae) 35241 rs16823264 COL4A4 1286 2 227837688 NM_000092 NP_000083 A/G I6T plus 23299833 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q35-q37 "collagen, type IV, alpha 4" 35242 rs16823264 COL4A4 1286 2 227837688 NM_000092 NP_000083 A/G I6T plus 23299833 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 2q35-q37 "collagen, type IV, alpha 4" 35243 rs16823264 COL4A4 1286 2 227837688 NM_000092 NP_000083 A/G I6T plus 23299833 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q35-q37 "collagen, type IV, alpha 4" 35244 rs16823940 WDR8 49856 1 3571355 NM_017818 NP_060288 C/T V358I plus 23157538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 1p36.3 WD repeat domain 8 35245 rs16823940 WDR8 49856 1 3571355 NM_017818 NP_060288 C/T V358I plus 23157538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1p36.3 WD repeat domain 8 35246 rs16823940 WDR8 49856 1 3571355 NM_017818 NP_060288 C/T V358I plus 23157538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.03 123 by freq 1p36.3 WD repeat domain 8 35247 rs16824215 PADI1 29943 1 17315997 NM_013358 NP_037490 A/G V649M plus 23163407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p36.13 "peptidyl arginine deiminase, type I" 35248 rs16824215 PADI1 29943 1 17315997 NM_013358 NP_037490 A/G V649M plus 23163407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 1p36.13 "peptidyl arginine deiminase, type I" 35249 rs16824215 PADI1 29943 1 17315997 NM_013358 NP_037490 A/G V649M plus 23163407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.13 "peptidyl arginine deiminase, type I" 35250 rs16824283 SKIP 80309 2 228681371 XM_051221 XP_051221 C/G S1603R plus 23902147 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.36 123 by freq 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 35251 rs16824283 SKIP 80309 2 228681371 XM_051221 XP_051221 C/G S1603R plus 23902147 1372 PERLEGEN AFD_AFR_PANEL African American (24) 30 0.1 123 by freq 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 35252 rs16824283 SKIP 80309 2 228681371 XM_051221 XP_051221 C/G S1603R plus 23902147 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.41 123 by freq 2q36 SPHK1 (sphingosine kinase type 1) interacting protein 35253 rs16824518 INPP5B 3633 1 38084408 XM_375718 XP_375718 G/T P55Q plus 23175524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 35254 rs16824518 INPP5B 3633 1 38084408 XM_375718 XP_375718 G/T P55Q plus 23175524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 35255 rs16824518 INPP5B 3633 1 38084408 XM_375718 XP_375718 G/T P55Q plus 23175524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 1p34 "inositol polyphosphate-5-phosphatase, 75kDa" 35256 rs16825359 CDC2L1 984 1 1667173 NM_033487 NP_277022 A/G V401A plus 24796054 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 by freq 1p36 cell division cycle 2-like 1 (PITSLRE proteins) 35257 rs16825359 CDC2L1 984 1 1667173 NM_033490 NP_277025 A/G V440A plus 24796054 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 by freq 1p36 cell division cycle 2-like 1 (PITSLRE proteins) 35258 rs16826069 MACF1 23499 1 39466148 NM_033044 NP_149033 A/G I39V plus 23856882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 1p32-p31 microtubule-actin crosslinking factor 1 35259 rs16826069 MACF1 23499 1 39466148 NM_033044 NP_149033 A/G I39V plus 23856882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1p32-p31 microtubule-actin crosslinking factor 1 35260 rs16826069 MACF1 23499 1 39466148 NM_033044 NP_149033 A/G I39V plus 23856882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 1p32-p31 microtubule-actin crosslinking factor 1 35261 rs16827493 NDUFS2 4720 1 157992777 NM_004550 NP_004541 C/G P229A plus 23840793 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23 "NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)" 35262 rs16827493 NDUFS2 4720 1 157992777 NM_004550 NP_004541 C/G P229A plus 23840793 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q23 "NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)" 35263 rs16827493 NDUFS2 4720 1 157992777 NM_004550 NP_004541 C/G P229A plus 23840793 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1q23 "NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)" 35264 rs16828486 UPLC1 55616 1 23509244 NM_017707 NP_060177 G/T E377A plus 23668009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p36.11 up-regulated in liver cancer 1 35265 rs16828486 UPLC1 55616 1 23509244 NM_017707 NP_060177 G/T E377A plus 23668009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1p36.11 up-regulated in liver cancer 1 35266 rs16828486 UPLC1 55616 1 23509244 NM_017707 NP_060177 G/T E377A plus 23668009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.11 up-regulated in liver cancer 1 35267 rs16829204 IL22RA1 58985 1 24199994 NM_021258 NP_067081 C/T V205I plus 23668065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 1p36.11 "interleukin 22 receptor, alpha 1" 35268 rs16829204 IL22RA1 58985 1 24199994 NM_021258 NP_067081 C/T V205I plus 23668065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 1p36.11 "interleukin 22 receptor, alpha 1" 35269 rs16829204 IL22RA1 58985 1 24199994 NM_021258 NP_067081 C/T V205I plus 23668065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.11 "interleukin 22 receptor, alpha 1" 35270 rs16829813 DSCR1L2 11123 1 24607054 NM_013441 NP_038469 A/C T236N plus 23170588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p35.3-p33 Down syndrome critical region gene 1-like 2 35271 rs16829813 DSCR1L2 11123 1 24607054 NM_013441 NP_038469 A/C T236N plus 23170588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 1p35.3-p33 Down syndrome critical region gene 1-like 2 35272 rs16829813 DSCR1L2 11123 1 24607054 NM_013441 NP_038469 A/C T236N plus 23170588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p35.3-p33 Down syndrome critical region gene 1-like 2 35273 rs16830057 Rif1 55183 2 152148036 NM_018151 NP_060621 G/T M2165R plus 23671145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q24.1 telomere-associated protein RIF1 homolog 35274 rs16830057 Rif1 55183 2 152148036 NM_018151 NP_060621 G/T M2165R plus 23671145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 2q24.1 telomere-associated protein RIF1 homolog 35275 rs16830057 Rif1 55183 2 152148036 NM_018151 NP_060621 G/T M2165R plus 23671145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 by freq 2q24.1 telomere-associated protein RIF1 homolog 35276 rs16830236 NEB 4703 2 152249233 NM_004543 NP_004534 C/T N4337S plus 23671194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q22 nebulin 35277 rs16830236 NEB 4703 2 152249233 NM_004543 NP_004534 C/T N4337S plus 23671194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q22 nebulin 35278 rs16830236 NEB 4703 2 152249233 NM_004543 NP_004534 C/T N4337S plus 23671194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q22 nebulin 35279 rs16831482 ATP1A4 480 1 156954244 NM_144699 NP_653300 G/T M541R plus 23838561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 35280 rs16831482 ATP1A4 480 1 156954244 NM_144699 NP_653300 G/T M541R plus 23838561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 35281 rs16831482 ATP1A4 480 1 156954244 NM_144699 NP_653300 G/T M541R plus 23838561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 35282 rs16832611 TBCE 6905 1 231920114 NM_003193 NP_003184 C/T V205A plus 23191792 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q42.3 tubulin-specific chaperone e 35283 rs16832611 TBCE 6905 1 231920114 NM_003193 NP_003184 C/T V205A plus 23191792 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q42.3 tubulin-specific chaperone e 35284 rs16832611 TBCE 6905 1 231920114 NM_003193 NP_003184 C/T V205A plus 23191792 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42.3 tubulin-specific chaperone e 35285 rs16832619 TBCE 6905 1 231928234 NM_003193 NP_003184 A/G E409G plus 23191902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q42.3 tubulin-specific chaperone e 35286 rs16832619 TBCE 6905 1 231928234 NM_003193 NP_003184 A/G E409G plus 23191902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q42.3 tubulin-specific chaperone e 35287 rs16832619 TBCE 6905 1 231928234 NM_003193 NP_003184 A/G E409G plus 23191902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42.3 tubulin-specific chaperone e 35288 rs16833183 NID 4811 1 232531481 NM_002508 NP_002499 C/T R302H plus 23195475 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 1q43 nidogen (enactin) 35289 rs16833183 NID 4811 1 232531481 NM_002508 NP_002499 C/T R302H plus 23195475 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.13 123 by freq 1q43 nidogen (enactin) 35290 rs16833183 NID 4811 1 232531481 NM_002508 NP_002499 C/T R302H plus 23195475 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 1q43 nidogen (enactin) 35291 rs16833336 CGN 57530 1 148309791 NM_020770 NP_065821 C/T R429C plus 23197778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21 cingulin 35292 rs16833336 CGN 57530 1 148309791 NM_020770 NP_065821 C/T R429C plus 23197778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 1q21 cingulin 35293 rs16833336 CGN 57530 1 148309791 NM_020770 NP_065821 C/T R429C plus 23197778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21 cingulin 35294 rs16833395 TUFT1 7286 1 148364338 NM_020127 NP_064512 A/G K296R plus 23198269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 1q21 tuftelin 1 35295 rs16833395 TUFT1 7286 1 148364338 NM_020127 NP_064512 A/G K296R plus 23198269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 1q21 tuftelin 1 35296 rs16833395 TUFT1 7286 1 148364338 NM_020127 NP_064512 A/G K296R plus 23198269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21 tuftelin 1 35297 rs16833517 HSPBAP1 79663 3 123979318 NM_024610 NP_078886 A/C S64A plus 23267430 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q21.1 HSPB (heat shock 27kDa) associated protein 1 35298 rs16833517 HSPBAP1 79663 3 123979318 NM_024610 NP_078886 A/C S64A plus 23267430 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 3q21.1 HSPB (heat shock 27kDa) associated protein 1 35299 rs16833517 HSPBAP1 79663 3 123979318 NM_024610 NP_078886 A/C S64A plus 23267430 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q21.1 HSPB (heat shock 27kDa) associated protein 1 35300 rs16834127 SDC3 9672 1 31023473 XM_375712 XP_375712 C/T H193R plus 24150750 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 35301 rs16834127 SDC3 9672 1 31023473 XM_375712 XP_375712 C/T H193R plus 24150750 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 35302 rs16834127 SDC3 9672 1 31023473 XM_375712 XP_375712 C/T H193R plus 24150750 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 1pter-p22.3 syndecan 3 (N-syndecan) 35303 rs16834168 NICE-1 54544 1 149301219 NM_019060 NP_061933 A/G C96Y plus 23868674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21 NICE-1 protein 35304 rs16834168 NICE-1 54544 1 149301219 NM_019060 NP_061933 A/G C96Y plus 23868674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q21 NICE-1 protein 35305 rs16834168 NICE-1 54544 1 149301219 NM_019060 NP_061933 A/G C96Y plus 23868674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 1q21 NICE-1 protein 35306 rs16834245 LEP13 353142 1 149408478 NM_178431 NP_848518 A/G R59C plus 23205072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21.3 late envelope protein 13 35307 rs16834245 LEP13 353142 1 149408478 NM_178431 NP_848518 A/G R59C plus 23205072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q21.3 late envelope protein 13 35308 rs16834245 LEP13 353142 1 149408478 NM_178431 NP_848518 A/G R59C plus 23205072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21.3 late envelope protein 13 35309 rs16834603 RGS13 6003 1 189360280 NM_002927 NP_002918 C/G L150F plus 23200154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q31.1 regulator of G-protein signalling 13 35310 rs16834603 RGS13 6003 1 189360280 NM_002927 NP_002918 C/G L150F plus 23200154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q31.1 regulator of G-protein signalling 13 35311 rs16834603 RGS13 6003 1 189360280 NM_002927 NP_002918 C/G L150F plus 23200154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31.1 regulator of G-protein signalling 13 35312 rs16834603 RGS13 6003 1 189360280 NM_144766 NP_658912 C/G L150F plus 23200154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q31.1 regulator of G-protein signalling 13 35313 rs16834603 RGS13 6003 1 189360280 NM_144766 NP_658912 C/G L150F plus 23200154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q31.1 regulator of G-protein signalling 13 35314 rs16834603 RGS13 6003 1 189360280 NM_144766 NP_658912 C/G L150F plus 23200154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31.1 regulator of G-protein signalling 13 35315 rs16834786 SPRR4 163778 1 149757572 NM_173080 NP_775103 C/T P45S plus 23208839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q22 small proline rich protein 4 35316 rs16834786 SPRR4 163778 1 149757572 NM_173080 NP_775103 C/T P45S plus 23208839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 1q22 small proline rich protein 4 35317 rs16834786 SPRR4 163778 1 149757572 NM_173080 NP_775103 C/T P45S plus 23208839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1q22 small proline rich protein 4 35318 rs16835244 ODC-p 113451 1 33231509 NM_052998 NP_443724 G/T A288S plus 23854520 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p33-p34.3 ornithine decarboxylase-like 35319 rs16835244 ODC-p 113451 1 33231509 NM_052998 NP_443724 G/T A288S plus 23854520 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p33-p34.3 ornithine decarboxylase-like 35320 rs16835244 ODC-p 113451 1 33231509 NM_052998 NP_443724 G/T A288S plus 23854520 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 1p33-p34.3 ornithine decarboxylase-like 35321 rs16836099 CSMD2 114784 1 34070546 NM_052896 NP_443128 A/G L167P plus 23684033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 1p34.3 CUB and Sushi multiple domains 2 35322 rs16836099 CSMD2 114784 1 34070546 NM_052896 NP_443128 A/G L167P plus 23684033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.37 123 by freq 1p34.3 CUB and Sushi multiple domains 2 35323 rs16836099 CSMD2 114784 1 34070546 NM_052896 NP_443128 A/G L167P plus 23684033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p34.3 CUB and Sushi multiple domains 2 35324 rs16836266 NEK11 79858 3 132475083 NM_024800 NP_079076 C/T V562A plus 23283448 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 35325 rs16836266 NEK11 79858 3 132475083 NM_024800 NP_079076 C/T V562A plus 23283448 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 35326 rs16836266 NEK11 79858 3 132475083 NM_024800 NP_079076 C/T V562A plus 23283448 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 3q22.1 NIMA (never in mitosis gene a)- related kinase 11 35327 rs16836525 PMVK 10654 1 151711972 NM_006556 NP_006547 C/T V125M plus 23218512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p13-q23 phosphomevalonate kinase 35328 rs16836525 PMVK 10654 1 151711972 NM_006556 NP_006547 C/T V125M plus 23218512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p13-q23 phosphomevalonate kinase 35329 rs16836525 PMVK 10654 1 151711972 NM_006556 NP_006547 C/T V125M plus 23218512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p13-q23 phosphomevalonate kinase 35330 rs16836857 CRA 10903 1 146715385 NM_181873 NP_870988 G/T Q459P plus 23199749 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q12-q21 cisplatin resistance associated 35331 rs16836857 CRA 10903 1 146715385 NM_181873 NP_870988 G/T Q459P plus 23199749 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1q12-q21 cisplatin resistance associated 35332 rs16836857 CRA 10903 1 146715385 NM_181873 NP_870988 G/T Q459P plus 23199749 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q12-q21 cisplatin resistance associated 35333 rs16837598 EVC 2121 4 5849146 NM_014556 NP_055371 C/T A114V plus 23363033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 4p16 Ellis van Creveld syndrome 35334 rs16837598 EVC 2121 4 5849146 NM_014556 NP_055371 C/T A114V plus 23363033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.14 123 by freq 4p16 Ellis van Creveld syndrome 35335 rs16837598 EVC 2121 4 5849146 NM_014556 NP_055371 C/T A114V plus 23363033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 4p16 Ellis van Creveld syndrome 35336 rs16837598 EVC 2121 4 5849146 NM_153717 NP_714928 C/T A114V plus 23363033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 4p16 Ellis van Creveld syndrome 35337 rs16837598 EVC 2121 4 5849146 NM_153717 NP_714928 C/T A114V plus 23363033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.14 123 by freq 4p16 Ellis van Creveld syndrome 35338 rs16837598 EVC 2121 4 5849146 NM_153717 NP_714928 C/T A114V plus 23363033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 4p16 Ellis van Creveld syndrome 35339 rs16838016 KCNJ3 3760 2 155380914 NM_002239 NP_002230 A/G K40R plus 28447187 914 HG_BONN_CNS_SNPS EURO96 European 186 0.02 123 by freq 2q24.1 "potassium inwardly-rectifying channel, subfamily J, member 3" 35340 rs16838748 IRTA2 83416 1 154322070 NM_031281 NP_112571 G/T N427K plus 23160722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21 immunoglobulin superfamily receptor translocation associated 2 35341 rs16838748 IRTA2 83416 1 154322070 NM_031281 NP_112571 G/T N427K plus 23160722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q21 immunoglobulin superfamily receptor translocation associated 2 35342 rs16838748 IRTA2 83416 1 154322070 NM_031281 NP_112571 G/T N427K plus 23160722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1q21 immunoglobulin superfamily receptor translocation associated 2 35343 rs16839100 SPAP1 79368 1 154551555 NM_030764 NP_110391 A/T I202N plus 23222579 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21 SH2 domain containing phosphatase anchor protein 1 35344 rs16839100 SPAP1 79368 1 154551555 NM_030764 NP_110391 A/T I202N plus 23222579 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q21 SH2 domain containing phosphatase anchor protein 1 35345 rs16839100 SPAP1 79368 1 154551555 NM_030764 NP_110391 A/T I202N plus 23222579 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21 SH2 domain containing phosphatase anchor protein 1 35346 rs16839277 CD5L 922 1 154618723 NM_005894 NP_005885 A/T D117E plus 23843844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q21-q23 CD5 antigen-like (scavenger receptor cysteine rich family) 35347 rs16839277 CD5L 922 1 154618723 NM_005894 NP_005885 A/T D117E plus 23843844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q21-q23 CD5 antigen-like (scavenger receptor cysteine rich family) 35348 rs16839277 CD5L 922 1 154618723 NM_005894 NP_005885 A/T D117E plus 23843844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 1q21-q23 CD5 antigen-like (scavenger receptor cysteine rich family) 35349 rs16839333 FMN2 56776 1 236502088 XM_371352 XP_371352 C/G H27D plus 23205380 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 1q43 formin 2 35350 rs16839333 FMN2 56776 1 236502088 XM_371352 XP_371352 C/G H27D plus 23205380 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 1q43 formin 2 35351 rs16839333 FMN2 56776 1 236502088 XM_371352 XP_371352 C/G H27D plus 23205380 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 1q43 formin 2 35352 rs16840208 DCBLD2 131566 3 100001067 NM_080927 NP_563615 C/T D723N plus 23903182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q12.2 "discoidin, CUB and LCCL domain containing 2" 35353 rs16840208 DCBLD2 131566 3 100001067 NM_080927 NP_563615 C/T D723N plus 23903182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q12.2 "discoidin, CUB and LCCL domain containing 2" 35354 rs16840208 DCBLD2 131566 3 100001067 NM_080927 NP_563615 C/T D723N plus 23903182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 3q12.2 "discoidin, CUB and LCCL domain containing 2" 35355 rs16840561 HFL1 3078 1 193532680 NM_002113 NP_002104 A/G A296V minus 24811549 1303 SEQUENOM CEPH CEPH (92) 92 0.5 123 by freq 1q32 H factor (complement)-like 1 35356 rs16840892 SORCS2 57537 4 7834132 NM_020777 NP_065828 C/T T545M plus 24164053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35357 rs16840892 SORCS2 57537 4 7834132 NM_020777 NP_065828 C/T T545M plus 24164053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35358 rs16840892 SORCS2 57537 4 7834132 NM_020777 NP_065828 C/T T545M plus 24164053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35359 rs16840899 SORCS2 57537 4 7835091 NM_020777 NP_065828 C/T T595I plus 23708554 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35360 rs16840899 SORCS2 57537 4 7835091 NM_020777 NP_065828 C/T T595I plus 23708554 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35361 rs16840899 SORCS2 57537 4 7835091 NM_020777 NP_065828 C/T T595I plus 23708554 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p16.1 sortilin-related VPS10 domain containing receptor 2 35362 rs16840913 PIP5K3 200576 2 209005445 NM_015040 NP_055855 A/G M617V plus 23215534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 35363 rs16840913 PIP5K3 200576 2 209005445 NM_015040 NP_055855 A/G M617V plus 23215534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 35364 rs16840913 PIP5K3 200576 2 209005445 NM_015040 NP_055855 A/G M617V plus 23215534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q34 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III" 35365 rs16840974 OR6K6 128371 1 155537795 XM_060956 XP_060956 C/G E29D plus 23214338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35366 rs16840974 OR6K6 128371 1 155537795 XM_060956 XP_060956 C/G E29D plus 23214338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35367 rs16840974 OR6K6 128371 1 155537795 XM_060956 XP_060956 C/G E29D plus 23214338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35368 rs16840976 OR6K6 128371 1 155537823 XM_060956 XP_060956 C/T H39Y plus 23214352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35369 rs16840976 OR6K6 128371 1 155537823 XM_060956 XP_060956 C/T H39Y plus 23214352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35370 rs16840976 OR6K6 128371 1 155537823 XM_060956 XP_060956 C/T H39Y plus 23214352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35371 rs16840980 OR6K6 128371 1 155537917 XM_060956 XP_060956 A/G G70D plus 23214361 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35372 rs16840980 OR6K6 128371 1 155537917 XM_060956 XP_060956 A/G G70D plus 23214361 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35373 rs16840980 OR6K6 128371 1 155537917 XM_060956 XP_060956 A/G G70D plus 23214361 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35374 rs16840991 OR6K6 128371 1 155538079 XM_060956 XP_060956 C/T S124L plus 23214397 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35375 rs16840991 OR6K6 128371 1 155538079 XM_060956 XP_060956 C/T S124L plus 23214397 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35376 rs16840991 OR6K6 128371 1 155538079 XM_060956 XP_060956 C/T S124L plus 23214397 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35377 rs16841001 OR6K6 128371 1 155538153 XM_060956 XP_060956 C/T R149C plus 23874360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35378 rs16841001 OR6K6 128371 1 155538153 XM_060956 XP_060956 C/T R149C plus 23874360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35379 rs16841001 OR6K6 128371 1 155538153 XM_060956 XP_060956 C/T R149C plus 23874360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35380 rs16841009 OR6K6 128371 1 155538267 XM_060956 XP_060956 C/T C187R plus 23214424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35381 rs16841009 OR6K6 128371 1 155538267 XM_060956 XP_060956 C/T C187R plus 23214424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35382 rs16841009 OR6K6 128371 1 155538267 XM_060956 XP_060956 C/T C187R plus 23214424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35383 rs16841017 OR6K6 128371 1 155538310 XM_060956 XP_060956 C/T P201L plus 23214431 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35384 rs16841017 OR6K6 128371 1 155538310 XM_060956 XP_060956 C/T P201L plus 23214431 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35385 rs16841017 OR6K6 128371 1 155538310 XM_060956 XP_060956 C/T P201L plus 23214431 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35386 rs16841018 DNAH7 56171 2 196546211 NM_018897 NP_061720 C/T I2809V plus 23721205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35387 rs16841018 DNAH7 56171 2 196546211 NM_018897 NP_061720 C/T I2809V plus 23721205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35388 rs16841018 DNAH7 56171 2 196546211 NM_018897 NP_061720 C/T I2809V plus 23721205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35389 rs16841038 OR6K6 128371 1 155538418 XM_060956 XP_060956 A/G R237Q plus 23214463 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35390 rs16841038 OR6K6 128371 1 155538418 XM_060956 XP_060956 A/G R237Q plus 23214463 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35391 rs16841038 OR6K6 128371 1 155538418 XM_060956 XP_060956 A/G R237Q plus 23214463 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35392 rs16841042 OR6K6 128371 1 155538460 XM_060956 XP_060956 A/G H251R plus 23214480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35393 rs16841042 OR6K6 128371 1 155538460 XM_060956 XP_060956 A/G H251R plus 23214480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35394 rs16841042 OR6K6 128371 1 155538460 XM_060956 XP_060956 A/G H251R plus 23214480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35395 rs16841045 OR6K6 128371 1 155538637 XM_060956 XP_060956 A/G K310R plus 23214494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35396 rs16841045 OR6K6 128371 1 155538637 XM_060956 XP_060956 A/G K310R plus 23214494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35397 rs16841045 OR6K6 128371 1 155538637 XM_060956 XP_060956 A/G K310R plus 23214494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q23.1 "olfactory receptor, family 6, subfamily K, member 6" 35398 rs16841081 ASPM 259266 1 193825018 NM_018136 NP_060606 A/G S1090F plus 23194187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 35399 rs16841081 ASPM 259266 1 193825018 NM_018136 NP_060606 A/G S1090F plus 23194187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 35400 rs16841081 ASPM 259266 1 193825018 NM_018136 NP_060606 A/G S1090F plus 23194187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31 "asp (abnormal spindle)-like, microcephaly associated (Drosophila)" 35401 rs16841199 DNAH7 56171 2 196554508 NM_018897 NP_061720 C/G N2459K plus 23721244 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35402 rs16841199 DNAH7 56171 2 196554508 NM_018897 NP_061720 C/G N2459K plus 23721244 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35403 rs16841199 DNAH7 56171 2 196554508 NM_018897 NP_061720 C/G N2459K plus 23721244 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35404 rs16841771 PSCDBP 9595 2 158116422 NM_004288 NP_004279 C/G Q83E plus 23893508 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q11.2 "pleckstrin homology, Sec7 and coiled-coil domains, binding protein" 35405 rs16841771 PSCDBP 9595 2 158116422 NM_004288 NP_004279 C/G Q83E plus 23893508 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2q11.2 "pleckstrin homology, Sec7 and coiled-coil domains, binding protein" 35406 rs16841771 PSCDBP 9595 2 158116422 NM_004288 NP_004279 C/G Q83E plus 23893508 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 2q11.2 "pleckstrin homology, Sec7 and coiled-coil domains, binding protein" 35407 rs16842171 CAPN2 824 1 220266626 NM_001748 NP_001739 A/C K677Q plus 23693453 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 35408 rs16842171 CAPN2 824 1 220266626 NM_001748 NP_001739 A/C K677Q plus 23693453 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 35409 rs16842171 CAPN2 824 1 220266626 NM_001748 NP_001739 A/C K677Q plus 23693453 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q41-q42 "calpain 2, (m/II) large subunit" 35410 rs16842846 IGSF9 57549 1 156714408 NM_020789 NP_065840 C/G R458P plus 23837985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q22-q23 "immunoglobulin superfamily, member 9" 35411 rs16842846 IGSF9 57549 1 156714408 NM_020789 NP_065840 C/G R458P plus 23837985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q22-q23 "immunoglobulin superfamily, member 9" 35412 rs16842846 IGSF9 57549 1 156714408 NM_020789 NP_065840 C/G R458P plus 23837985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1q22-q23 "immunoglobulin superfamily, member 9" 35413 rs16843254 ATP6V1G3 127124 1 195229891 NM_133262 NP_573569 C/G E54Q plus 23204576 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 35414 rs16843254 ATP6V1G3 127124 1 195229891 NM_133262 NP_573569 C/G E54Q plus 23204576 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 35415 rs16843254 ATP6V1G3 127124 1 195229891 NM_133262 NP_573569 C/G E54Q plus 23204576 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31.3 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3" 35416 rs16843643 FARP2 9855 2 242072758 XM_376193 XP_376193 A/C K185N plus 23305582 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 35417 rs16843643 FARP2 9855 2 242072758 XM_376193 XP_376193 A/C K185N plus 23305582 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 35418 rs16843643 FARP2 9855 2 242072758 XM_376193 XP_376193 A/C K185N plus 23305582 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q37.3 "FERM, RhoGEF and pleckstrin domain protein 2" 35419 rs16843645 PPP2R3A 5523 3 137228609 NM_002718 NP_002709 A/G D745N plus 28459814 549 KYUGEN CP CEPH (78) 156 1 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 35420 rs16843645 PPP2R3A 5523 3 137228609 NM_002718 NP_002709 A/G D745N plus 28459814 1335 KYUGEN JPK2 Japanese (100) 200 0.15 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 35421 rs16843645 PPP2R3A 5523 3 137228609 NM_181897 NP_871626 A/G D124N plus 28459814 549 KYUGEN CP CEPH (78) 156 1 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 35422 rs16843645 PPP2R3A 5523 3 137228609 NM_181897 NP_871626 A/G D124N plus 28459814 1335 KYUGEN JPK2 Japanese (100) 200 0.15 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 35423 rs16843720 DNAH7 56171 2 196690974 NM_018897 NP_061720 C/T S438N plus 23287610 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35424 rs16843720 DNAH7 56171 2 196690974 NM_018897 NP_061720 C/T S438N plus 23287610 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35425 rs16843720 DNAH7 56171 2 196690974 NM_018897 NP_061720 C/T S438N plus 23287610 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q33.1 "dynein, axonemal, heavy polypeptide 7" 35426 rs16844031 RG9MTD1 54931 3 102766807 NM_017819 NP_060289 C/G K13N plus 23296328 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q12.3 RNA (guanine-9-) methyltransferase domain containing 1 35427 rs16844031 RG9MTD1 54931 3 102766807 NM_017819 NP_060289 C/G K13N plus 23296328 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q12.3 RNA (guanine-9-) methyltransferase domain containing 1 35428 rs16844031 RG9MTD1 54931 3 102766807 NM_017819 NP_060289 C/G K13N plus 23296328 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q12.3 RNA (guanine-9-) methyltransferase domain containing 1 35429 rs16844152 RGS12 6002 4 3355695 NM_002926 NP_002917 A/T M277L plus 23251213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4p16.3 regulator of G-protein signalling 12 35430 rs16844152 RGS12 6002 4 3355695 NM_002926 NP_002917 A/T M277L plus 23251213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 4p16.3 regulator of G-protein signalling 12 35431 rs16844152 RGS12 6002 4 3355695 NM_002926 NP_002917 A/T M277L plus 23251213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4p16.3 regulator of G-protein signalling 12 35432 rs16844152 RGS12 6002 4 3355695 NM_198229 NP_937872 A/T M277L plus 23251213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4p16.3 regulator of G-protein signalling 12 35433 rs16844152 RGS12 6002 4 3355695 NM_198229 NP_937872 A/T M277L plus 23251213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 4p16.3 regulator of G-protein signalling 12 35434 rs16844152 RGS12 6002 4 3355695 NM_198229 NP_937872 A/T M277L plus 23251213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4p16.3 regulator of G-protein signalling 12 35435 rs16844152 RGS12 6002 4 3355695 NM_198432 NP_940834 A/T M277L plus 23251213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4p16.3 regulator of G-protein signalling 12 35436 rs16844152 RGS12 6002 4 3355695 NM_198432 NP_940834 A/T M277L plus 23251213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 4p16.3 regulator of G-protein signalling 12 35437 rs16844152 RGS12 6002 4 3355695 NM_198432 NP_940834 A/T M277L plus 23251213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4p16.3 regulator of G-protein signalling 12 35438 rs16844275 AXOT 64844 2 160429886 NM_022826 NP_073737 C/T T193I plus 23897824 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2q24.2 axotrophin 35439 rs16844275 AXOT 64844 2 160429886 NM_022826 NP_073737 C/T T193I plus 23897824 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 2q24.2 axotrophin 35440 rs16844275 AXOT 64844 2 160429886 NM_022826 NP_073737 C/T T193I plus 23897824 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 2q24.2 axotrophin 35441 rs16844370 HGFAC 3083 4 3483081 NM_001528 NP_001519 A/G V225M plus 23252732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4p16 HGF activator 35442 rs16844370 HGFAC 3083 4 3483081 NM_001528 NP_001519 A/G V225M plus 23252732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4p16 HGF activator 35443 rs16844370 HGFAC 3083 4 3483081 NM_001528 NP_001519 A/G V225M plus 23252732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4p16 HGF activator 35444 rs16844401 HGFAC 3083 4 3486621 NM_001528 NP_001519 A/G R509H plus 23895689 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 4p16 HGF activator 35445 rs16844401 HGFAC 3083 4 3486621 NM_001528 NP_001519 A/G R509H plus 23895689 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4p16 HGF activator 35446 rs16844401 HGFAC 3083 4 3486621 NM_001528 NP_001519 A/G R509H plus 23895689 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 4p16 HGF activator 35447 rs16845385 SAS10 57050 4 71919497 NM_020368 NP_065101 C/T T23M plus 23360759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 4q13.3 disrupter of silencing 10 35448 rs16845385 SAS10 57050 4 71919497 NM_020368 NP_065101 C/T T23M plus 23360759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q13.3 disrupter of silencing 10 35449 rs16845385 SAS10 57050 4 71919497 NM_020368 NP_065101 C/T T23M plus 23360759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q13.3 disrupter of silencing 10 35450 rs16845759 TNFSF10 8743 3 173715482 NM_003810 NP_003801 G/T D47E plus 23332064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q26 "tumor necrosis factor (ligand) superfamily, member 10" 35451 rs16845759 TNFSF10 8743 3 173715482 NM_003810 NP_003801 G/T D47E plus 23332064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q26 "tumor necrosis factor (ligand) superfamily, member 10" 35452 rs16845759 TNFSF10 8743 3 173715482 NM_003810 NP_003801 G/T D47E plus 23332064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q26 "tumor necrosis factor (ligand) superfamily, member 10" 35453 rs16846208 ATF6 22926 1 158492970 NM_007348 NP_031374 C/T P157S plus 23843009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 1q22-q23 activating transcription factor 6 35454 rs16846208 ATF6 22926 1 158492970 NM_007348 NP_031374 C/T P157S plus 23843009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1q22-q23 activating transcription factor 6 35455 rs16846208 ATF6 22926 1 158492970 NM_007348 NP_031374 C/T P157S plus 23843009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 1q22-q23 activating transcription factor 6 35456 rs16846616 NYD-SP12 83893 3 174317784 NM_031955 NP_114161 C/T G147E plus 23968666 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 3q26.32 NYD-SP12 protein 35457 rs16846616 NYD-SP12 83893 3 174317784 NM_031955 NP_114161 C/T G147E plus 23968666 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q26.32 NYD-SP12 protein 35458 rs16846616 NYD-SP12 83893 3 174317784 NM_031955 NP_114161 C/T G147E plus 23968666 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 3q26.32 NYD-SP12 protein 35459 rs16846673 P2RY12 64805 3 152538343 NM_022788 NP_073625 C/T E330G plus 23673750 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35460 rs16846673 P2RY12 64805 3 152538343 NM_022788 NP_073625 C/T E330G plus 23673750 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35461 rs16846673 P2RY12 64805 3 152538343 NM_022788 NP_073625 C/T E330G plus 23673750 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35462 rs16846673 P2RY12 64805 3 152538343 NM_176876 NP_795345 C/T E330G plus 23673750 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35463 rs16846673 P2RY12 64805 3 152538343 NM_176876 NP_795345 C/T E330G plus 23673750 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35464 rs16846673 P2RY12 64805 3 152538343 NM_176876 NP_795345 C/T E330G plus 23673750 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q24-q25 "purinergic receptor P2Y, G-protein coupled, 12" 35465 rs16847812 TNN 63923 1 171781036 XM_040527 XP_040527 A/G D289N plus 24153513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1q23-q24 tenascin N 35466 rs16847812 TNN 63923 1 171781036 XM_040527 XP_040527 A/G D289N plus 24153513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 1q23-q24 tenascin N 35467 rs16847812 TNN 63923 1 171781036 XM_040527 XP_040527 A/G D289N plus 24153513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.29 123 by freq 1q23-q24 tenascin N 35468 rs16848846 FMN2 56776 1 236502438 XM_371352 XP_371352 C/T R93C plus 23205411 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q43 formin 2 35469 rs16848846 FMN2 56776 1 236502438 XM_371352 XP_371352 C/T R93C plus 23205411 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q43 formin 2 35470 rs16848846 FMN2 56776 1 236502438 XM_371352 XP_371352 C/T R93C plus 23205411 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q43 formin 2 35471 rs16849342 NAV1 89796 1 198486101 NM_020443 NP_065176 C/G Q937H plus 23166081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1q32.3 neuron navigator 1 35472 rs16849342 NAV1 89796 1 198486101 NM_020443 NP_065176 C/G Q937H plus 23166081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32.3 neuron navigator 1 35473 rs16849342 NAV1 89796 1 198486101 NM_020443 NP_065176 C/G Q937H plus 23166081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.3 neuron navigator 1 35474 rs16849439 AFP 174 4 74684573 NM_001134 NP_001125 C/G A570G plus 23251553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q11-q13 alpha-fetoprotein 35475 rs16849439 AFP 174 4 74684573 NM_001134 NP_001125 C/G A570G plus 23251553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 by freq 4q11-q13 alpha-fetoprotein 35476 rs16849439 AFP 174 4 74684573 NM_001134 NP_001125 C/G A570G plus 23251553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q11-q13 alpha-fetoprotein 35477 rs16849700 BCHE 590 3 167030675 NM_000055 NP_000046 C/G E283D plus 23355964 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q26.1-q26.2 butyrylcholinesterase 35478 rs16849700 BCHE 590 3 167030675 NM_000055 NP_000046 C/G E283D plus 23355964 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q26.1-q26.2 butyrylcholinesterase 35479 rs16849700 BCHE 590 3 167030675 NM_000055 NP_000046 C/G E283D plus 23355964 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q26.1-q26.2 butyrylcholinesterase 35480 rs16851681 ATP10D 57205 4 47419899 NM_020453 NP_065186 A/G R1183K plus 23726989 1371 PERLEGEN AFD_EUR_PANEL European American (24) 40 0.18 123 by freq 4p12 "ATPase, Class V, type 10D" 35481 rs16851681 ATP10D 57205 4 47419899 NM_020453 NP_065186 A/G R1183K plus 23726989 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.47 123 by freq 4p12 "ATPase, Class V, type 10D" 35482 rs16851681 ATP10D 57205 4 47419899 NM_020453 NP_065186 A/G R1183K plus 23726989 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 by freq 4p12 "ATPase, Class V, type 10D" 35483 rs16852652 CAPN9 10753 1 227221524 NM_006615 NP_006606 A/G E342K plus 23236761 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35484 rs16852652 CAPN9 10753 1 227221524 NM_006615 NP_006606 A/G E342K plus 23236761 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35485 rs16852652 CAPN9 10753 1 227221524 NM_006615 NP_006606 A/G E342K plus 23236761 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35486 rs16852683 CAPN9 10753 1 227235372 NM_006615 NP_006606 A/G M611I plus 23236931 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35487 rs16852683 CAPN9 10753 1 227235372 NM_006615 NP_006606 A/G M611I plus 23236931 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35488 rs16852683 CAPN9 10753 1 227235372 NM_006615 NP_006606 A/G M611I plus 23236931 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q42.11-q42.3 calpain 9 (nCL-4) 35489 rs16852767 CDCA1 83540 1 160045226 NM_031423 NP_113611 A/C S239R plus 23837183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.2 cell division cycle associated 1 35490 rs16852767 CDCA1 83540 1 160045226 NM_031423 NP_113611 A/C S239R plus 23837183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q23.2 cell division cycle associated 1 35491 rs16852767 CDCA1 83540 1 160045226 NM_031423 NP_113611 A/C S239R plus 23837183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1q23.2 cell division cycle associated 1 35492 rs16852767 CDCA1 83540 1 160045226 NM_145697 NP_663735 A/C S239R plus 23837183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23.2 cell division cycle associated 1 35493 rs16852767 CDCA1 83540 1 160045226 NM_145697 NP_663735 A/C S239R plus 23837183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q23.2 cell division cycle associated 1 35494 rs16852767 CDCA1 83540 1 160045226 NM_145697 NP_663735 A/C S239R plus 23837183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 1q23.2 cell division cycle associated 1 35495 rs16853149 ABCA12 26154 2 215709574 NM_015657 NP_056472 C/T E232G plus 23314184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35496 rs16853149 ABCA12 26154 2 215709574 NM_015657 NP_056472 C/T E232G plus 23314184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35497 rs16853149 ABCA12 26154 2 215709574 NM_015657 NP_056472 C/T E232G plus 23314184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35498 rs16853149 ABCA12 26154 2 215709574 NM_173076 NP_775099 C/T E550G plus 23314184 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35499 rs16853149 ABCA12 26154 2 215709574 NM_173076 NP_775099 C/T E550G plus 23314184 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35500 rs16853149 ABCA12 26154 2 215709574 NM_173076 NP_775099 C/T E550G plus 23314184 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35501 rs16853238 ABCA12 26154 2 215739952 NM_173076 NP_775099 C/G W199C plus 23314511 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35502 rs16853238 ABCA12 26154 2 215739952 NM_173076 NP_775099 C/G W199C plus 23314511 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.29 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35503 rs16853238 ABCA12 26154 2 215739952 NM_173076 NP_775099 C/G W199C plus 23314511 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 2q34-q35 "ATP-binding cassette, sub-family A (ABC1), member 12" 35504 rs16853305 CMYA3 129446 2 167925282 XM_496606 XP_496606 C/G P677A plus 23195952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q31.1 cardiomyopathy associated 3 35505 rs16853305 CMYA3 129446 2 167925282 XM_496606 XP_496606 C/G P677A plus 23195952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 2q31.1 cardiomyopathy associated 3 35506 rs16853305 CMYA3 129446 2 167925282 XM_496606 XP_496606 C/G P677A plus 23195952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 2q31.1 cardiomyopathy associated 3 35507 rs16853306 CMYA3 129446 2 167925303 XM_496606 XP_496606 C/T Y684H plus 23195965 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 2q31.1 cardiomyopathy associated 3 35508 rs16853306 CMYA3 129446 2 167925303 XM_496606 XP_496606 C/T Y684H plus 23195965 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 2q31.1 cardiomyopathy associated 3 35509 rs16853306 CMYA3 129446 2 167925303 XM_496606 XP_496606 C/T Y684H plus 23195965 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 2q31.1 cardiomyopathy associated 3 35510 rs16853309 CMYA3 129446 2 167928811 XM_496606 XP_496606 A/G R1853H plus 23195980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q31.1 cardiomyopathy associated 3 35511 rs16853309 CMYA3 129446 2 167928811 XM_496606 XP_496606 A/G R1853H plus 23195980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 2q31.1 cardiomyopathy associated 3 35512 rs16853309 CMYA3 129446 2 167928811 XM_496606 XP_496606 A/G R1853H plus 23195980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 2q31.1 cardiomyopathy associated 3 35513 rs16853328 CMYA3 129446 2 167931592 XM_496606 XP_496606 A/G S2780N plus 23196019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q31.1 cardiomyopathy associated 3 35514 rs16853328 CMYA3 129446 2 167931592 XM_496606 XP_496606 A/G S2780N plus 23196019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 2q31.1 cardiomyopathy associated 3 35515 rs16853328 CMYA3 129446 2 167931592 XM_496606 XP_496606 A/G S2780N plus 23196019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 2q31.1 cardiomyopathy associated 3 35516 rs16853330 CMYA3 129446 2 167931753 XM_496606 XP_496606 A/G V2834I plus 23196031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 2q31.1 cardiomyopathy associated 3 35517 rs16853330 CMYA3 129446 2 167931753 XM_496606 XP_496606 A/G V2834I plus 23196031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 2q31.1 cardiomyopathy associated 3 35518 rs16853330 CMYA3 129446 2 167931753 XM_496606 XP_496606 A/G V2834I plus 23196031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 2q31.1 cardiomyopathy associated 3 35519 rs16853331 CMYA3 129446 2 167932662 XM_496606 XP_496606 A/G A3137T plus 23196042 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q31.1 cardiomyopathy associated 3 35520 rs16853331 CMYA3 129446 2 167932662 XM_496606 XP_496606 A/G A3137T plus 23196042 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 2q31.1 cardiomyopathy associated 3 35521 rs16853331 CMYA3 129446 2 167932662 XM_496606 XP_496606 A/G A3137T plus 23196042 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 2q31.1 cardiomyopathy associated 3 35522 rs16854774 NFASC 23114 1 201647502 XM_046808 XP_046808 A/G R119G plus 23700721 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32.1 neurofascin 35523 rs16854774 NFASC 23114 1 201647502 XM_046808 XP_046808 A/G R119G plus 23700721 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1q32.1 neurofascin 35524 rs16854774 NFASC 23114 1 201647502 XM_046808 XP_046808 A/G R119G plus 23700721 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 neurofascin 35525 rs16854916 GUCA1C 9626 3 110109714 NM_005459 NP_005450 C/T M159V plus 23272519 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 3q13.1 guanylate cyclase activator 1C 35526 rs16854916 GUCA1C 9626 3 110109714 NM_005459 NP_005450 C/T M159V plus 23272519 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q13.1 guanylate cyclase activator 1C 35527 rs16854916 GUCA1C 9626 3 110109714 NM_005459 NP_005450 C/T M159V plus 23272519 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q13.1 guanylate cyclase activator 1C 35528 rs16855035 MORC 27136 3 110160512 NM_014429 NP_055244 C/G S982W plus 23343839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 3q13 microrchidia homolog (mouse) 35529 rs16855035 MORC 27136 3 110160512 NM_014429 NP_055244 C/G S982W plus 23343839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 3q13 microrchidia homolog (mouse) 35530 rs16855035 MORC 27136 3 110160512 NM_014429 NP_055244 C/G S982W plus 23343839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q13 microrchidia homolog (mouse) 35531 rs16855164 CAP350 9857 1 176742568 NM_014810 NP_055625 A/G T1446A plus 24152891 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p36.13-q41 centrosome-associated protein 350 35532 rs16855164 CAP350 9857 1 176742568 NM_014810 NP_055625 A/G T1446A plus 24152891 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 1p36.13-q41 centrosome-associated protein 350 35533 rs16855164 CAP350 9857 1 176742568 NM_014810 NP_055625 A/G T1446A plus 24152891 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 1p36.13-q41 centrosome-associated protein 350 35534 rs16855539 LEMD1 93273 1 202117069 XM_371338 XP_371338 A/G I73T plus 23701841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32.1 LEM domain containing 1 35535 rs16855539 LEMD1 93273 1 202117069 XM_371338 XP_371338 A/G I73T plus 23701841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q32.1 LEM domain containing 1 35536 rs16855539 LEMD1 93273 1 202117069 XM_371338 XP_371338 A/G I73T plus 23701841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1q32.1 LEM domain containing 1 35537 rs16856448 SLC26A9 115019 1 202615696 NM_134325 NP_599152 A/G V882A plus 23702691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35538 rs16856448 SLC26A9 115019 1 202615696 NM_134325 NP_599152 A/G V882A plus 23702691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35539 rs16856448 SLC26A9 115019 1 202615696 NM_134325 NP_599152 A/G V882A plus 23702691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35540 rs16856462 SLC26A9 115019 1 202619638 NM_052934 NP_443166 C/T H748R plus 23702731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35541 rs16856462 SLC26A9 115019 1 202619638 NM_052934 NP_443166 C/T H748R plus 23702731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35542 rs16856462 SLC26A9 115019 1 202619638 NM_052934 NP_443166 C/T H748R plus 23702731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35543 rs16856462 SLC26A9 115019 1 202619638 NM_134325 NP_599152 C/T H748R plus 23702731 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35544 rs16856462 SLC26A9 115019 1 202619638 NM_134325 NP_599152 C/T H748R plus 23702731 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35545 rs16856462 SLC26A9 115019 1 202619638 NM_134325 NP_599152 C/T H748R plus 23702731 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q31-q32 "solute carrier family 26, member 9" 35546 rs16858632 EIF4G1 1981 3 185522006 NM_004953 NP_004944 A/G Y115C plus 23390968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35547 rs16858632 EIF4G1 1981 3 185522006 NM_004953 NP_004944 A/G Y115C plus 23390968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35548 rs16858632 EIF4G1 1981 3 185522006 NM_004953 NP_004944 A/G Y115C plus 23390968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35549 rs16858632 EIF4G1 1981 3 185522006 NM_182917 NP_886553 A/G Y311C plus 23390968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35550 rs16858632 EIF4G1 1981 3 185522006 NM_182917 NP_886553 A/G Y311C plus 23390968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35551 rs16858632 EIF4G1 1981 3 185522006 NM_182917 NP_886553 A/G Y311C plus 23390968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35552 rs16858632 EIF4G1 1981 3 185522006 NM_198241 NP_937884 A/G Y311C plus 23390968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35553 rs16858632 EIF4G1 1981 3 185522006 NM_198241 NP_937884 A/G Y311C plus 23390968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35554 rs16858632 EIF4G1 1981 3 185522006 NM_198241 NP_937884 A/G Y311C plus 23390968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35555 rs16858632 EIF4G1 1981 3 185522006 NM_198242 NP_937885 A/G Y147C plus 23390968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35556 rs16858632 EIF4G1 1981 3 185522006 NM_198242 NP_937885 A/G Y147C plus 23390968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35557 rs16858632 EIF4G1 1981 3 185522006 NM_198242 NP_937885 A/G Y147C plus 23390968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35558 rs16858632 EIF4G1 1981 3 185522006 NM_198244 NP_937887 A/G Y224C plus 23390968 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35559 rs16858632 EIF4G1 1981 3 185522006 NM_198244 NP_937887 A/G Y224C plus 23390968 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35560 rs16858632 EIF4G1 1981 3 185522006 NM_198244 NP_937887 A/G Y224C plus 23390968 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27-qter "eukaryotic translation initiation factor 4 gamma, 1" 35561 rs16858780 CHRD 8646 3 185586605 NM_003741 NP_003732 A/C M630L plus 23391148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 by freq 3q27 chordin 35562 rs16858780 CHRD 8646 3 185586605 NM_003741 NP_003732 A/C M630L plus 23391148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.33 123 by freq 3q27 chordin 35563 rs16858780 CHRD 8646 3 185586605 NM_003741 NP_003732 A/C M630L plus 23391148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.32 123 by freq 3q27 chordin 35564 rs16858811 IL8RA 3577 2 218855349 NM_000634 NP_000625 G/T M31R minus 28446158 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 44 0.11 123 by freq 2q35 "interleukin 8 receptor, alpha" 35565 rs16858811 IL8RA 3577 2 218855349 NM_000634 NP_000625 G/T M31R minus 28446158 596 PGA-UW-FHCRC PGA-EUROPEAN-PANEL 44 0.02 123 by freq 2q35 "interleukin 8 receptor, alpha" 35566 rs16859132 TMPRSS7 344805 3 113263431 XM_293599 XP_293599 C/T A361V plus 23314933 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q13.2 transmembrane serine protease 7 35567 rs16859132 TMPRSS7 344805 3 113263431 XM_293599 XP_293599 C/T A361V plus 23314933 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 3q13.2 transmembrane serine protease 7 35568 rs16859132 TMPRSS7 344805 3 113263431 XM_293599 XP_293599 C/T A361V plus 23314933 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 3q13.2 transmembrane serine protease 7 35569 rs16859180 STK36 27148 2 219378973 NM_015690 NP_056505 C/T R477W plus 23727576 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 35570 rs16859180 STK36 27148 2 219378973 NM_015690 NP_056505 C/T R477W plus 23727576 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 35571 rs16859180 STK36 27148 2 219378973 NM_015690 NP_056505 C/T R477W plus 23727576 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 2q35 "serine/threonine kinase 36 (fused homolog, Drosophila)" 35572 rs16859834 GABRA4 2557 4 46836294 NM_000809 NP_000800 G/T L26M plus 23726112 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.3 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35573 rs16859834 GABRA4 2557 4 46836294 NM_000809 NP_000800 G/T L26M plus 23726112 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35574 rs16859834 GABRA4 2557 4 46836294 NM_000809 NP_000800 G/T L26M plus 23726112 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.3 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35575 rs16859837 GABRA4 2557 4 46836315 NM_000809 NP_000800 C/T A19T plus 23726113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35576 rs16859837 GABRA4 2557 4 46836315 NM_000809 NP_000800 C/T A19T plus 23726113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35577 rs16859837 GABRA4 2557 4 46836315 NM_000809 NP_000800 C/T A19T plus 23726113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p12 "gamma-aminobutyric acid (GABA) A receptor, alpha 4" 35578 rs16859886 SAC 55811 1 164597529 NM_018417 NP_060887 A/G T234M plus 23180261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 by freq 1q24 testicular soluble adenylyl cyclase 35579 rs16859886 SAC 55811 1 164597529 NM_018417 NP_060887 A/G T234M plus 23180261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q24 testicular soluble adenylyl cyclase 35580 rs16859886 SAC 55811 1 164597529 NM_018417 NP_060887 A/G T234M plus 23180261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q24 testicular soluble adenylyl cyclase 35581 rs16860530 ITGA6 3655 2 173175389 NM_000210 NP_000201 A/G I582V plus 23222533 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q31.1 "integrin, alpha 6" 35582 rs16860530 ITGA6 3655 2 173175389 NM_000210 NP_000201 A/G I582V plus 23222533 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q31.1 "integrin, alpha 6" 35583 rs16860530 ITGA6 3655 2 173175389 NM_000210 NP_000201 A/G I582V plus 23222533 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q31.1 "integrin, alpha 6" 35584 rs16862578 RBAF600 23352 1 19244866 NM_020765 NP_065816 C/T T1107A plus 23155531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1p36.13 retinoblastoma-associated factor 600 35585 rs16862578 RBAF600 23352 1 19244866 NM_020765 NP_065816 C/T T1107A plus 23155531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 1p36.13 retinoblastoma-associated factor 600 35586 rs16862578 RBAF600 23352 1 19244866 NM_020765 NP_065816 C/T T1107A plus 23155531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.13 retinoblastoma-associated factor 600 35587 rs16862653 NAG 51594 2 15492950 NM_015909 NP_056993 C/T R1004Q plus 23693551 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p24 neuroblastoma-amplified protein 35588 rs16862653 NAG 51594 2 15492950 NM_015909 NP_056993 C/T R1004Q plus 23693551 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 by freq 2p24 neuroblastoma-amplified protein 35589 rs16862653 NAG 51594 2 15492950 NM_015909 NP_056993 C/T R1004Q plus 23693551 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 2p24 neuroblastoma-amplified protein 35590 rs16863403 IGSF10 285313 3 152646872 NM_178822 NP_849144 A/C S1199A plus 23673784 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 35591 rs16863403 IGSF10 285313 3 152646872 NM_178822 NP_849144 A/C S1199A plus 23673784 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 35592 rs16863403 IGSF10 285313 3 152646872 NM_178822 NP_849144 A/C S1199A plus 23673784 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 35593 rs16864314 FMO1 2326 1 167982854 NM_002021 NP_002012 A/G I303V plus 23199227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q23-q25 flavin containing monooxygenase 1 35594 rs16864314 FMO1 2326 1 167982854 NM_002021 NP_002012 A/G I303V plus 23199227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1q23-q25 flavin containing monooxygenase 1 35595 rs16864314 FMO1 2326 1 167982854 NM_002021 NP_002012 A/G I303V plus 23199227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1q23-q25 flavin containing monooxygenase 1 35596 rs16864976 SCG2 7857 2 224289325 NM_003469 NP_003460 A/G Y61H plus 23898607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q35-q36 secretogranin II (chromogranin C) 35597 rs16864976 SCG2 7857 2 224289325 NM_003469 NP_003460 A/G Y61H plus 23898607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 2q35-q36 secretogranin II (chromogranin C) 35598 rs16864976 SCG2 7857 2 224289325 NM_003469 NP_003460 A/G Y61H plus 23898607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2q35-q36 secretogranin II (chromogranin C) 35599 rs16866489 TTN 7273 2 179436125 NM_133379 NP_596870 C/G S5503T plus 23705275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q31 titin 35600 rs16866489 TTN 7273 2 179436125 NM_133379 NP_596870 C/G S5503T plus 23705275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q31 titin 35601 rs16866489 TTN 7273 2 179436125 NM_133379 NP_596870 C/G S5503T plus 23705275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q31 titin 35602 rs16866531 TTN 7273 2 179469138 NM_133379 NP_596870 C/T I1393V plus 23705382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2q31 titin 35603 rs16866531 TTN 7273 2 179469138 NM_133379 NP_596870 C/T I1393V plus 23705382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2q31 titin 35604 rs16866531 TTN 7273 2 179469138 NM_133379 NP_596870 C/T I1393V plus 23705382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q31 titin 35605 rs16866538 TTN 7273 2 179485418 NM_133379 NP_596870 A/G R328C plus 24162131 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2q31 titin 35606 rs16866538 TTN 7273 2 179485418 NM_133379 NP_596870 A/G R328C plus 24162131 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 2q31 titin 35607 rs16866538 TTN 7273 2 179485418 NM_133379 NP_596870 A/G R328C plus 24162131 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 2q31 titin 35608 rs16867049 ADAM17 6868 2 9618528 NM_003183 NP_003174 C/T R202G plus 23189242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35609 rs16867049 ADAM17 6868 2 9618528 NM_003183 NP_003174 C/T R202G plus 23189242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35610 rs16867049 ADAM17 6868 2 9618528 NM_003183 NP_003174 C/T R202G plus 23189242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35611 rs16867049 ADAM17 6868 2 9618528 NM_021832 NP_068604 C/T R202G plus 23189242 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35612 rs16867049 ADAM17 6868 2 9618528 NM_021832 NP_068604 C/T R202G plus 23189242 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35613 rs16867049 ADAM17 6868 2 9618528 NM_021832 NP_068604 C/T R202G plus 23189242 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p25 "a disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme)" 35614 rs16867245 TAF1B 9014 2 10010442 NM_005680 NP_005671 C/T T487M plus 24162699 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 35615 rs16867245 TAF1B 9014 2 10010442 NM_005680 NP_005671 C/T T487M plus 24162699 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 35616 rs16867245 TAF1B 9014 2 10010442 NM_005680 NP_005671 C/T T487M plus 24162699 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 2p25 "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 35617 rs16867256 TFCP2L2 29841 2 10052066 NM_014552 NP_055367 A/G N191S plus 23706304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 2p25.1 transcription factor CP2-like 2 35618 rs16867256 TFCP2L2 29841 2 10052066 NM_014552 NP_055367 A/G N191S plus 23706304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 2p25.1 transcription factor CP2-like 2 35619 rs16867256 TFCP2L2 29841 2 10052066 NM_014552 NP_055367 A/G N191S plus 23706304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2p25.1 transcription factor CP2-like 2 35620 rs16867256 TFCP2L2 29841 2 10052066 NM_198182 NP_937825 A/G I28V plus 23706304 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 2p25.1 transcription factor CP2-like 2 35621 rs16867256 TFCP2L2 29841 2 10052066 NM_198182 NP_937825 A/G I28V plus 23706304 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 2p25.1 transcription factor CP2-like 2 35622 rs16867256 TFCP2L2 29841 2 10052066 NM_198182 NP_937825 A/G I28V plus 23706304 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2p25.1 transcription factor CP2-like 2 35623 rs16869924 MIST 116449 4 10244001 NM_052964 NP_443196 C/T S65G plus 24164440 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4 mast cell immunoreceptor signal transducer 35624 rs16869924 MIST 116449 4 10244001 NM_052964 NP_443196 C/T S65G plus 24164440 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 4 mast cell immunoreceptor signal transducer 35625 rs16869924 MIST 116449 4 10244001 NM_052964 NP_443196 C/T S65G plus 24164440 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 4 mast cell immunoreceptor signal transducer 35626 rs16870794 AGXT2 64902 5 35072896 NM_031900 NP_114106 C/G G132R plus 23408898 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35627 rs16870794 AGXT2 64902 5 35072896 NM_031900 NP_114106 C/G G132R plus 23408898 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35628 rs16870794 AGXT2 64902 5 35072896 NM_031900 NP_114106 C/G G132R plus 23408898 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35629 rs16870908 TAP2 6891 6 32898067 NM_018833 NP_061313 A/G L647F plus 23718111 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 35630 rs16870908 TAP2 6891 6 32898067 NM_018833 NP_061313 A/G L647F plus 23718111 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.21 123 by freq 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 35631 rs16870908 TAP2 6891 6 32898067 NM_018833 NP_061313 A/G L647F plus 23718111 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 6p21.3 "transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)" 35632 rs16871473 PRLR 5618 5 35120404 NM_000949 NP_000940 C/T I100V plus 23986596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5p14-p13 prolactin receptor 35633 rs16871473 PRLR 5618 5 35120404 NM_000949 NP_000940 C/T I100V plus 23986596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 5p14-p13 prolactin receptor 35634 rs16871473 PRLR 5618 5 35120404 NM_000949 NP_000940 C/T I100V plus 23986596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5p14-p13 prolactin receptor 35635 rs16871494 LRP12 29967 8 105572577 NM_013437 NP_038465 C/T S694G plus 23533555 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q22.2-q23.1 suppression of tumorigenicity 35636 rs16871494 LRP12 29967 8 105572577 NM_013437 NP_038465 C/T S694G plus 23533555 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 8q22.2-q23.1 suppression of tumorigenicity 35637 rs16871494 LRP12 29967 8 105572577 NM_013437 NP_038465 C/T S694G plus 23533555 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 8q22.2-q23.1 suppression of tumorigenicity 35638 rs16871612 CAPN11 11131 6 44253041 NM_007058 NP_008989 C/T V404A plus 24145548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 6p12 calpain 11 35639 rs16871612 CAPN11 11131 6 44253041 NM_007058 NP_008989 C/T V404A plus 24145548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 6p12 calpain 11 35640 rs16871612 CAPN11 11131 6 44253041 NM_007058 NP_008989 C/T V404A plus 24145548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 by freq 6p12 calpain 11 35641 rs16872235 EFG2 84340 5 74073142 NM_032380 NP_115756 A/T S300C plus 23750417 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 5q13 mitochondrial elongation factor G2 35642 rs16872235 EFG2 84340 5 74073142 NM_032380 NP_115756 A/T S300C plus 23750417 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 5q13 mitochondrial elongation factor G2 35643 rs16872235 EFG2 84340 5 74073142 NM_032380 NP_115756 A/T S300C plus 23750417 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13 mitochondrial elongation factor G2 35644 rs16872235 EFG2 84340 5 74073142 NM_170681 NP_733781 A/T S300C plus 23750417 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 5q13 mitochondrial elongation factor G2 35645 rs16872235 EFG2 84340 5 74073142 NM_170681 NP_733781 A/T S300C plus 23750417 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 5q13 mitochondrial elongation factor G2 35646 rs16872235 EFG2 84340 5 74073142 NM_170681 NP_733781 A/T S300C plus 23750417 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13 mitochondrial elongation factor G2 35647 rs16872235 EFG2 84340 5 74073142 NM_170691 NP_733792 A/T S300C plus 23750417 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 5q13 mitochondrial elongation factor G2 35648 rs16872235 EFG2 84340 5 74073142 NM_170691 NP_733792 A/T S300C plus 23750417 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 5q13 mitochondrial elongation factor G2 35649 rs16872235 EFG2 84340 5 74073142 NM_170691 NP_733792 A/T S300C plus 23750417 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13 mitochondrial elongation factor G2 35650 rs16873108 GBA3 57733 4 22425961 NM_020973 NP_066024 C/T C354R plus 23334182 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 35651 rs16873108 GBA3 57733 4 22425961 NM_020973 NP_066024 C/T C354R plus 23334182 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 35652 rs16873108 GBA3 57733 4 22425961 NM_020973 NP_066024 C/T C354R plus 23334182 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 35653 rs16873741 ZFPM2 23414 8 106884650 NM_012082 NP_036214 C/T A1055V plus 23545489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q23 "zinc finger protein, multitype 2" 35654 rs16873741 ZFPM2 23414 8 106884650 NM_012082 NP_036214 C/T A1055V plus 23545489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 8q23 "zinc finger protein, multitype 2" 35655 rs16873741 ZFPM2 23414 8 106884650 NM_012082 NP_036214 C/T A1055V plus 23545489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23 "zinc finger protein, multitype 2" 35656 rs16874326 ENPP5 59084 6 46241241 NM_021572 NP_067547 C/T Y283C plus 24000747 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 35657 rs16874326 ENPP5 59084 6 46241241 NM_021572 NP_067547 C/T Y283C plus 24000747 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 35658 rs16874326 ENPP5 59084 6 46241241 NM_021572 NP_067547 C/T Y283C plus 24000747 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.1-p11.2 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function) 35659 rs16874698 CD83 9308 6 14243373 NM_004233 NP_004224 A/G R182Q plus 23299861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p23 "CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)" 35660 rs16874698 CD83 9308 6 14243373 NM_004233 NP_004224 A/G R182Q plus 23299861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6p23 "CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)" 35661 rs16874698 CD83 9308 6 14243373 NM_004233 NP_004224 A/G R182Q plus 23299861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p23 "CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)" 35662 rs16875054 ADAMTS16 170690 5 5262210 NM_139056 NP_620687 A/G A486T plus 23883407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35663 rs16875054 ADAMTS16 170690 5 5262210 NM_139056 NP_620687 A/G A486T plus 23883407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35664 rs16875054 ADAMTS16 170690 5 5262210 NM_139056 NP_620687 A/G A486T plus 23883407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35665 rs16875099 MEP1A 4224 6 46914768 NM_005588 NP_005579 C/T T726M plus 24796316 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 by freq 6p12-p11 "meprin A, alpha (PABA peptide hydrolase)" 35666 rs16875122 ADAMTS16 170690 5 5295218 NM_139056 NP_620687 G/T R859L plus 23883720 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35667 rs16875122 ADAMTS16 170690 5 5295218 NM_139056 NP_620687 G/T R859L plus 23883720 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35668 rs16875122 ADAMTS16 170690 5 5295218 NM_139056 NP_620687 G/T R859L plus 23883720 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 5p15 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16" 35669 rs16875312 LY64 4064 5 66517533 NM_005582 NP_005573 C/G N53K minus 28458892 549 KYUGEN CP CEPH (78) 156 1 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 35670 rs16875312 LY64 4064 5 66517533 NM_005582 NP_005573 C/G N53K minus 28458892 1335 KYUGEN JPK2 Japanese (100) 200 0.1 123 by freq 5q12 "lymphocyte antigen 64 homolog, radioprotective 105kDa (mouse)" 35671 rs16876571 DTNBP1 84062 6 15632658 NM_183040 NP_898861 A/G H297Y plus 28447152 914 HG_BONN_CNS_SNPS EURO96 European 178 0.03 123 by freq 6p22.3 dystrobrevin binding protein 1 35672 rs16876657 JMY 133746 5 78645930 NM_152405 NP_689618 A/G H366R plus 23394347 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5q14.1 junction-mediating and regulatory protein 35673 rs16876657 JMY 133746 5 78645930 NM_152405 NP_689618 A/G H366R plus 23394347 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 5q14.1 junction-mediating and regulatory protein 35674 rs16876657 JMY 133746 5 78645930 NM_152405 NP_689618 A/G H366R plus 23394347 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 5q14.1 junction-mediating and regulatory protein 35675 rs16876805 PSKH2 85481 8 87129959 NM_033126 NP_149117 C/T I336V plus 23475867 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q21.2 protein serine kinase H2 35676 rs16876805 PSKH2 85481 8 87129959 NM_033126 NP_149117 C/T I336V plus 23475867 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 8q21.2 protein serine kinase H2 35677 rs16876805 PSKH2 85481 8 87129959 NM_033126 NP_149117 C/T I336V plus 23475867 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q21.2 protein serine kinase H2 35678 rs16878472 RASGRF2 5924 5 80445163 NM_006909 NP_008840 G/T L713W plus 23403378 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q13 Ras protein-specific guanine nucleotide-releasing factor 2 35679 rs16878472 RASGRF2 5924 5 80445163 NM_006909 NP_008840 G/T L713W plus 23403378 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5q13 Ras protein-specific guanine nucleotide-releasing factor 2 35680 rs16878472 RASGRF2 5924 5 80445163 NM_006909 NP_008840 G/T L713W plus 23403378 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13 Ras protein-specific guanine nucleotide-releasing factor 2 35681 rs16878594 ZCCHC9 84240 5 80636375 NM_032280 NP_115656 C/G P15A plus 23404764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5q14.1 "zinc finger, CCHC domain containing 9" 35682 rs16878594 ZCCHC9 84240 5 80636375 NM_032280 NP_115656 C/G P15A plus 23404764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q14.1 "zinc finger, CCHC domain containing 9" 35683 rs16878594 ZCCHC9 84240 5 80636375 NM_032280 NP_115656 C/G P15A plus 23404764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q14.1 "zinc finger, CCHC domain containing 9" 35684 rs16879334 MTRR 4552 5 7944506 NM_002454 NP_002445 C/G P450R plus 23902339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35685 rs16879334 MTRR 4552 5 7944506 NM_002454 NP_002445 C/G P450R plus 23902339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35686 rs16879334 MTRR 4552 5 7944506 NM_002454 NP_002445 C/G P450R plus 23902339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35687 rs16879334 MTRR 4552 5 7944506 NM_024010 NP_076915 C/G P477R plus 23902339 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35688 rs16879334 MTRR 4552 5 7944506 NM_024010 NP_076915 C/G P477R plus 23902339 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35689 rs16879334 MTRR 4552 5 7944506 NM_024010 NP_076915 C/G P477R plus 23902339 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5p15.3-p15.2 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 35690 rs16879427 PSKH2 85481 8 87145767 NM_033126 NP_149117 C/T Q132R plus 23476039 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q21.2 protein serine kinase H2 35691 rs16879427 PSKH2 85481 8 87145767 NM_033126 NP_149117 C/T Q132R plus 23476039 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 8q21.2 protein serine kinase H2 35692 rs16879427 PSKH2 85481 8 87145767 NM_033126 NP_149117 C/T Q132R plus 23476039 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q21.2 protein serine kinase H2 35693 rs16879428 PKHD1L1 93035 8 110481587 NM_177531 NP_803875 C/G W373C plus 23573033 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35694 rs16879428 PKHD1L1 93035 8 110481587 NM_177531 NP_803875 C/G W373C plus 23573033 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35695 rs16879428 PKHD1L1 93035 8 110481587 NM_177531 NP_803875 C/G W373C plus 23573033 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35696 rs16879498 RHAG 6005 6 49688206 NM_000324 NP_000315 C/T V270I plus 23338282 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.1-p11 Rhesus blood group-associated glycoprotein 35697 rs16879498 RHAG 6005 6 49688206 NM_000324 NP_000315 C/T V270I plus 23338282 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 6p21.1-p11 Rhesus blood group-associated glycoprotein 35698 rs16879498 RHAG 6005 6 49688206 NM_000324 NP_000315 C/T V270I plus 23338282 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.1-p11 Rhesus blood group-associated glycoprotein 35699 rs16879534 PKHD1L1 93035 8 110506619 NM_177531 NP_803875 C/T Y943H plus 23573416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35700 rs16879534 PKHD1L1 93035 8 110506619 NM_177531 NP_803875 C/T Y943H plus 23573416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35701 rs16879534 PKHD1L1 93035 8 110506619 NM_177531 NP_803875 C/T Y943H plus 23573416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35702 rs16879659 PKHD1L1 93035 8 110573394 NM_177531 NP_803875 A/G I3411V plus 23574064 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35703 rs16879659 PKHD1L1 93035 8 110573394 NM_177531 NP_803875 A/G I3411V plus 23574064 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35704 rs16879659 PKHD1L1 93035 8 110573394 NM_177531 NP_803875 A/G I3411V plus 23574064 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35705 rs16879693 PKHD1L1 93035 8 110596605 NM_177531 NP_803875 C/T L3862F plus 23574320 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35706 rs16879693 PKHD1L1 93035 8 110596605 NM_177531 NP_803875 C/T L3862F plus 23574320 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35707 rs16879693 PKHD1L1 93035 8 110596605 NM_177531 NP_803875 C/T L3862F plus 23574320 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23.2 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 35708 rs16879902 NUP153 9972 6 17796672 NM_005124 NP_005115 C/T D90N plus 23995241 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6p22.3 nucleoporin 153kDa 35709 rs16879902 NUP153 9972 6 17796672 NM_005124 NP_005115 C/T D90N plus 23995241 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6p22.3 nucleoporin 153kDa 35710 rs16879902 NUP153 9972 6 17796672 NM_005124 NP_005115 C/T D90N plus 23995241 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 6p22.3 nucleoporin 153kDa 35711 rs16880254 TPMT 7172 6 18238897 NM_000367 NP_000358 A/G Y240C minus 28446991 1167 PHARMGKB_PPII PA128747820 180 0.08 123 by freq 6p22.3 thiopurine S-methyltransferase 35712 rs16880853 FUT10 84750 8 33366433 NM_032664 NP_116053 A/G Y268H plus 23497408 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35713 rs16880853 FUT10 84750 8 33366433 NM_032664 NP_116053 A/G Y268H plus 23497408 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35714 rs16880853 FUT10 84750 8 33366433 NM_032664 NP_116053 A/G Y268H plus 23497408 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35715 rs16880994 FUT10 84750 8 33430477 NM_032664 NP_116053 A/G L59F plus 23498079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35716 rs16880994 FUT10 84750 8 33430477 NM_032664 NP_116053 A/G L59F plus 23498079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35717 rs16880994 FUT10 84750 8 33430477 NM_032664 NP_116053 A/G L59F plus 23498079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p12 "fucosyltransferase 10 (alpha (1,3) fucosyltransferase)" 35718 rs16881897 NFE2L3 9603 7 25998101 NM_004289 NP_004280 A/G P515S minus 24811506 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 7p15-p14 nuclear factor (erythroid-derived 2)-like 3 35719 rs16881983 ANKRD6 22881 6 90372490 XM_376519 XP_376519 C/G Q122E plus 23458247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q14.2-q16.1 ankyrin repeat domain 6 35720 rs16881983 ANKRD6 22881 6 90372490 XM_376519 XP_376519 C/G Q122E plus 23458247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6q14.2-q16.1 ankyrin repeat domain 6 35721 rs16881983 ANKRD6 22881 6 90372490 XM_376519 XP_376519 C/G Q122E plus 23458247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 6q14.2-q16.1 ankyrin repeat domain 6 35722 rs16882046 MDN1 23195 6 90431004 NM_014611 NP_055426 A/G I4720T plus 23983029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35723 rs16882046 MDN1 23195 6 90431004 NM_014611 NP_055426 A/G I4720T plus 23983029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35724 rs16882046 MDN1 23195 6 90431004 NM_014611 NP_055426 A/G I4720T plus 23983029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35725 rs16882099 MDN1 23195 6 90489577 NM_014611 NP_055426 C/G H1929D plus 23983374 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35726 rs16882099 MDN1 23195 6 90489577 NM_014611 NP_055426 C/G H1929D plus 23983374 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35727 rs16882099 MDN1 23195 6 90489577 NM_014611 NP_055426 C/G H1929D plus 23983374 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6q15 "MDN1, midasin homolog (yeast)" 35728 rs16883930 SLC17A5 26503 6 74388340 NM_012434 NP_036566 C/T V296I plus 23967839 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q14-q15 "solute carrier family 17 (anion/sugar transporter), member 5" 35729 rs16883930 SLC17A5 26503 6 74388340 NM_012434 NP_036566 C/T V296I plus 23967839 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 6q14-q15 "solute carrier family 17 (anion/sugar transporter), member 5" 35730 rs16883930 SLC17A5 26503 6 74388340 NM_012434 NP_036566 C/T V296I plus 23967839 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 6q14-q15 "solute carrier family 17 (anion/sugar transporter), member 5" 35731 rs16885197 TINAG 27283 6 54281314 NM_014464 NP_055279 A/G T3A plus 23339781 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 35732 rs16885197 TINAG 27283 6 54281314 NM_014464 NP_055279 A/G T3A plus 23339781 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 35733 rs16885197 TINAG 27283 6 54281314 NM_014464 NP_055279 A/G T3A plus 23339781 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p11.2-p12 tubulointerstitial nephritis antigen 35734 rs16888053 DST 667 6 56579757 NM_020388 NP_065121 C/T Q2006R plus 23348363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35735 rs16888053 DST 667 6 56579757 NM_020388 NP_065121 C/T Q2006R plus 23348363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35736 rs16888053 DST 667 6 56579757 NM_020388 NP_065121 C/T Q2006R plus 23348363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 6p12-p11 "bullous pemphigoid antigen 1, 230/240kDa" 35737 rs16888561 DRD5 1816 4 9461287 NM_000798 NP_000789 A/G W455X plus 24813029 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 4p16.1 dopamine receptor D5 35738 rs16889318 PI16 221476 6 37039342 NM_153370 NP_699201 C/G L381V plus 23336813 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.31 protease inhibitor 16 35739 rs16889318 PI16 221476 6 37039342 NM_153370 NP_699201 C/G L381V plus 23336813 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 6p21.31 protease inhibitor 16 35740 rs16889318 PI16 221476 6 37039342 NM_153370 NP_699201 C/G L381V plus 23336813 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p21.31 protease inhibitor 16 35741 rs16889320 RSHL2 83861 6 159385308 NM_031924 NP_114130 C/T N201S plus 24049969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 6q25.3 radial spokehead-like 2 35742 rs16889320 RSHL2 83861 6 159385308 NM_031924 NP_114130 C/T N201S plus 24049969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6q25.3 radial spokehead-like 2 35743 rs16889320 RSHL2 83861 6 159385308 NM_031924 NP_114130 C/T N201S plus 24049969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 6q25.3 radial spokehead-like 2 35744 rs16889462 SLC30A8 169026 8 118253965 NM_173851 NP_776250 A/G R325Q plus 23770172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35745 rs16889462 SLC30A8 169026 8 118253965 NM_173851 NP_776250 A/G R325Q plus 23770172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35746 rs16889462 SLC30A8 169026 8 118253965 NM_173851 NP_776250 A/G R325Q plus 23770172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.03 123 by freq 8q24.11 "solute carrier family 30 (zinc transporter), member 8" 35747 rs16890979 SLC2A9 56606 4 9598436 NM_001001290 NP_001001290 C/T V253I plus 23260819 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35748 rs16890979 SLC2A9 56606 4 9598436 NM_001001290 NP_001001290 C/T V253I plus 23260819 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35749 rs16890979 SLC2A9 56606 4 9598436 NM_001001290 NP_001001290 C/T V253I plus 23260819 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35750 rs16890979 SLC2A9 56606 4 9598436 NM_020041 NP_064425 C/T V282I plus 23260819 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35751 rs16890979 SLC2A9 56606 4 9598436 NM_020041 NP_064425 C/T V282I plus 23260819 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35752 rs16890979 SLC2A9 56606 4 9598436 NM_020041 NP_064425 C/T V282I plus 23260819 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p16-p15.3 "solute carrier family 2 (facilitated glucose transporter), member 9" 35753 rs16891129 TARS 6897 5 33476950 NM_152295 NP_689508 A/G M1V plus 23453040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p13.2 threonyl-tRNA synthetase 35754 rs16891129 TARS 6897 5 33476950 NM_152295 NP_689508 A/G M1V plus 23453040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5p13.2 threonyl-tRNA synthetase 35755 rs16891129 TARS 6897 5 33476950 NM_152295 NP_689508 A/G M1V plus 23453040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13.2 threonyl-tRNA synthetase 35756 rs16891235 HIST1H1A 3024 6 26125521 NM_005325 NP_005316 C/T K140R plus 23329778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 6p21.3 "histone 1, H1a" 35757 rs16891235 HIST1H1A 3024 6 26125521 NM_005325 NP_005316 C/T K140R plus 23329778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 6p21.3 "histone 1, H1a" 35758 rs16891235 HIST1H1A 3024 6 26125521 NM_005325 NP_005316 C/T K140R plus 23329778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p21.3 "histone 1, H1a" 35759 rs16891583 CHRNA6 8973 8 42730159 NM_004198 NP_004189 C/T N447S plus 23481843 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p11.21 "cholinergic receptor, nicotinic, alpha polypeptide 6" 35760 rs16891583 CHRNA6 8973 8 42730159 NM_004198 NP_004189 C/T N447S plus 23481843 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8p11.21 "cholinergic receptor, nicotinic, alpha polypeptide 6" 35761 rs16891583 CHRNA6 8973 8 42730159 NM_004198 NP_004189 C/T N447S plus 23481843 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 8p11.21 "cholinergic receptor, nicotinic, alpha polypeptide 6" 35762 rs16891646 BTN2A2 10385 6 26501037 NM_006995 NP_008926 C/T P479S plus 23333143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35763 rs16891646 BTN2A2 10385 6 26501037 NM_006995 NP_008926 C/T P479S plus 23333143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35764 rs16891646 BTN2A2 10385 6 26501037 NM_006995 NP_008926 C/T P479S plus 23333143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35765 rs16891646 BTN2A2 10385 6 26501037 NM_181531 NP_853509 C/T P363S plus 23333143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35766 rs16891646 BTN2A2 10385 6 26501037 NM_181531 NP_853509 C/T P363S plus 23333143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35767 rs16891646 BTN2A2 10385 6 26501037 NM_181531 NP_853509 C/T P363S plus 23333143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p22.1 "butyrophilin, subfamily 2, member A2" 35768 rs16891982 MATP 51151 5 33987450 NM_016180 NP_057264 C/G L374F plus 23456916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p13.3 membrane associated transporter 35769 rs16891982 MATP 51151 5 33987450 NM_016180 NP_057264 C/G L374F plus 23456916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5p13.3 membrane associated transporter 35770 rs16891982 MATP 51151 5 33987450 NM_016180 NP_057264 C/G L374F plus 23456916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13.3 membrane associated transporter 35771 rs16892150 AMACR 23600 5 34041656 NM_014324 NP_055139 C/T R118Q plus 23457669 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35772 rs16892150 AMACR 23600 5 34041656 NM_014324 NP_055139 C/T R118Q plus 23457669 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35773 rs16892150 AMACR 23600 5 34041656 NM_014324 NP_055139 C/T R118Q plus 23457669 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35774 rs16892150 AMACR 23600 5 34041656 NM_203382 NP_976316 C/T R118Q plus 23457669 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35775 rs16892150 AMACR 23600 5 34041656 NM_203382 NP_976316 C/T R118Q plus 23457669 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35776 rs16892150 AMACR 23600 5 34041656 NM_203382 NP_976316 C/T R118Q plus 23457669 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p13.2-q11.1 alpha-methylacyl-CoA racemase 35777 rs16892767 ENPP2 5168 8 120646331 NM_006209 NP_006200 A/G S778L plus 23388356 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 35778 rs16892767 ENPP2 5168 8 120646331 NM_006209 NP_006200 A/G S778L plus 23388356 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 35779 rs16892767 ENPP2 5168 8 120646331 NM_006209 NP_006200 A/G S778L plus 23388356 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q24.1 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin) 35780 rs16893917 PGBD1 84547 6 28377386 NM_032507 NP_115896 A/G M592I plus 23916061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 6p21.33 piggyBac transposable element derived 1 35781 rs16893917 PGBD1 84547 6 28377386 NM_032507 NP_115896 A/G M592I plus 23916061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 6p21.33 piggyBac transposable element derived 1 35782 rs16893917 PGBD1 84547 6 28377386 NM_032507 NP_115896 A/G M592I plus 23916061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 6p21.33 piggyBac transposable element derived 1 35783 rs16894812 ERBB2IP 55914 5 65385138 NM_018695 NP_061165 A/G K746E plus 23263257 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q13.1 erbb2 interacting protein 35784 rs16894812 ERBB2IP 55914 5 65385138 NM_018695 NP_061165 A/G K746E plus 23263257 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 5q13.1 erbb2 interacting protein 35785 rs16894812 ERBB2IP 55914 5 65385138 NM_018695 NP_061165 A/G K746E plus 23263257 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13.1 erbb2 interacting protein 35786 rs16894898 OR11A1 26531 6 29503036 NM_013937 NP_039225 C/T Y121C plus 23297407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6p21.31-22.2 "olfactory receptor, family 11, subfamily A, member 1" 35787 rs16894898 OR11A1 26531 6 29503036 NM_013937 NP_039225 C/T Y121C plus 23297407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6p21.31-22.2 "olfactory receptor, family 11, subfamily A, member 1" 35788 rs16894898 OR11A1 26531 6 29503036 NM_013937 NP_039225 C/T Y121C plus 23297407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p21.31-22.2 "olfactory receptor, family 11, subfamily A, member 1" 35789 rs16896012 HLA-A 3105 6 30019186 NM_002116 NP_002107 A/G R169H plus 24819835 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 by freq 6p21.3 "major histocompatibility complex, class I, A" 35790 rs16896284 HLA-A 3105 6 30018704 NM_002116 NP_002107 C/G R89G plus 24819802 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 by freq 6p21.3 "major histocompatibility complex, class I, A" 35791 rs16896294 HLA-A 3105 6 30019235 NM_002116 NP_002107 G/T D185E plus 24819847 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 6p21.3 "major histocompatibility complex, class I, A" 35792 rs16897482 POU5F1 5460 6 31240499 NM_002701 NP_002692 C/T L314P minus 24812408 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 6p21.31 "POU domain, class 5, transcription factor 1" 35793 rs16897482 POU5F1 5460 6 31240499 NM_203289 NP_976034 C/T L219P minus 24812408 1303 SEQUENOM CEPH CEPH (92) 184 0.4 123 by freq 6p21.31 "POU domain, class 5, transcription factor 1" 35794 rs16897725 PPP1R10 5514 6 30682340 NM_002714 NP_002705 C/G R173P plus 23310979 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 6p21.3 "protein phosphatase 1, regulatory subunit 10" 35795 rs16897725 PPP1R10 5514 6 30682340 NM_002714 NP_002705 C/G R173P plus 23310979 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 6p21.3 "protein phosphatase 1, regulatory subunit 10" 35796 rs16897725 PPP1R10 5514 6 30682340 NM_002714 NP_002705 C/G R173P plus 23310979 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 6p21.3 "protein phosphatase 1, regulatory subunit 10" 35797 rs16899974 AGXT2 64902 5 35034634 NM_031900 NP_114106 A/C V498L plus 23986087 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35798 rs16899974 AGXT2 64902 5 35034634 NM_031900 NP_114106 A/C V498L plus 23986087 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35799 rs16899974 AGXT2 64902 5 35034634 NM_031900 NP_114106 A/C V498L plus 23986087 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 35800 rs16900023 MSH5 4439 6 31837904 NM_002441 NP_002432 C/T P786S plus 24796279 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 6p21.3 mutS homolog 5 (E. coli) 35801 rs16900023 MSH5 4439 6 31837904 NM_025259 NP_079535 C/T P803S plus 24796279 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 6p21.3 mutS homolog 5 (E. coli) 35802 rs16900023 MSH5 4439 6 31837904 NM_172165 NP_751897 C/T P787S plus 24796279 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 6p21.3 mutS homolog 5 (E. coli) 35803 rs16900023 MSH5 4439 6 31837904 NM_172166 NP_751898 C/T P786S plus 24796279 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 6p21.3 mutS homolog 5 (E. coli) 35804 rs16900532 CSPG2 1462 5 82873611 NM_004385 NP_004376 A/C N3011K plus 23674327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 35805 rs16900532 CSPG2 1462 5 82873611 NM_004385 NP_004376 A/C N3011K plus 23674327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 35806 rs16900532 CSPG2 1462 5 82873611 NM_004385 NP_004376 A/C N3011K plus 23674327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q14.3 chondroitin sulfate proteoglycan 2 (versican) 35807 rs16900603 TRIB1 10221 8 126517856 NM_025195 NP_079471 G/T E360D plus 23564633 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q24.13 tribbles homolog 1 (Drosophila) 35808 rs16900603 TRIB1 10221 8 126517856 NM_025195 NP_079471 G/T E360D plus 23564633 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q24.13 tribbles homolog 1 (Drosophila) 35809 rs16900603 TRIB1 10221 8 126517856 NM_025195 NP_079471 G/T E360D plus 23564633 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q24.13 tribbles homolog 1 (Drosophila) 35810 rs16901311 DLL1 28514 6 170510669 NM_005618 NP_005609 C/T V444M plus 23472058 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q27 delta-like 1 (Drosophila) 35811 rs16901311 DLL1 28514 6 170510669 NM_005618 NP_005609 C/T V444M plus 23472058 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q27 delta-like 1 (Drosophila) 35812 rs16901311 DLL1 28514 6 170510669 NM_005618 NP_005609 C/T V444M plus 23472058 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 6q27 delta-like 1 (Drosophila) 35813 rs16902880 DNAH5 1767 5 13935858 NM_001369 NP_001360 C/T M1081V plus 23402167 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35814 rs16902880 DNAH5 1767 5 13935858 NM_001369 NP_001360 C/T M1081V plus 23402167 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35815 rs16902880 DNAH5 1767 5 13935858 NM_001369 NP_001360 C/T M1081V plus 23402167 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35816 rs16902886 DNAH5 1767 5 13936171 NM_001369 NP_001360 C/T S1006G plus 23402193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35817 rs16902886 DNAH5 1767 5 13936171 NM_001369 NP_001360 C/T S1006G plus 23402193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35818 rs16902886 DNAH5 1767 5 13936171 NM_001369 NP_001360 C/T S1006G plus 23402193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 35819 rs16903367 TRIO 7204 5 14344328 NM_007118 NP_009049 G/T D348E plus 23276880 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p15.1-p14 triple functional domain (PTPRF interacting) 35820 rs16903367 TRIO 7204 5 14344328 NM_007118 NP_009049 G/T D348E plus 23276880 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5p15.1-p14 triple functional domain (PTPRF interacting) 35821 rs16903367 TRIO 7204 5 14344328 NM_007118 NP_009049 G/T D348E plus 23276880 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p15.1-p14 triple functional domain (PTPRF interacting) 35822 rs16904151 MLZE 56169 8 130847177 NM_031415 NP_113603 C/T R150K plus 23537874 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q24.1-q24.2 "melanoma-derived leucine zipper, extra-nuclear factor" 35823 rs16904151 MLZE 56169 8 130847177 NM_031415 NP_113603 C/T R150K plus 23537874 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 8q24.1-q24.2 "melanoma-derived leucine zipper, extra-nuclear factor" 35824 rs16904151 MLZE 56169 8 130847177 NM_031415 NP_113603 C/T R150K plus 23537874 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q24.1-q24.2 "melanoma-derived leucine zipper, extra-nuclear factor" 35825 rs16904585 HHLA1 10086 8 133161304 NM_005712 NP_005703 C/G Q113H plus 23472061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 8q24 HERV-H LTR-associating 1 35826 rs16904585 HHLA1 10086 8 133161304 NM_005712 NP_005703 C/G Q113H plus 23472061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 8q24 HERV-H LTR-associating 1 35827 rs16904585 HHLA1 10086 8 133161304 NM_005712 NP_005703 C/G Q113H plus 23472061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 8q24 HERV-H LTR-associating 1 35828 rs16905649 PTPRJ 5795 11 48105928 NM_002843 NP_002834 A/G V372I plus 23783913 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 35829 rs16905649 PTPRJ 5795 11 48105928 NM_002843 NP_002834 A/G V372I plus 23783913 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 35830 rs16905649 PTPRJ 5795 11 48105928 NM_002843 NP_002834 A/G V372I plus 23783913 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p11.2 "protein tyrosine phosphatase, receptor type, J" 35831 rs16905753 OR4X1 390113 11 48242482 XM_372376 XP_372376 C/T P165L plus 23784021 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 35832 rs16905753 OR4X1 390113 11 48242482 XM_372376 XP_372376 C/T P165L plus 23784021 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 35833 rs16905753 OR4X1 390113 11 48242482 XM_372376 XP_372376 C/T P165L plus 23784021 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 35834 rs16906079 TLR4 7099 9 117554483 NM_003266 NP_003257 A/G T135A plus 28459746 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35835 rs16906079 TLR4 7099 9 117554483 NM_003266 NP_003257 A/G T135A plus 28459746 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35836 rs16906079 TLR4 7099 9 117554483 NM_003266 NP_003257 A/G T135A plus 28459747 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35837 rs16906079 TLR4 7099 9 117554483 NM_003266 NP_003257 A/G T135A plus 28459747 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35838 rs16906079 TLR4 7099 9 117554483 NM_138554 NP_612564 A/G T175A plus 28459746 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35839 rs16906079 TLR4 7099 9 117554483 NM_138554 NP_612564 A/G T175A plus 28459746 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35840 rs16906079 TLR4 7099 9 117554483 NM_138554 NP_612564 A/G T175A plus 28459747 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35841 rs16906079 TLR4 7099 9 117554483 NM_138554 NP_612564 A/G T175A plus 28459747 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35842 rs16906079 TLR4 7099 9 117554483 NM_138556 NP_612566 A/G T118A plus 28459746 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35843 rs16906079 TLR4 7099 9 117554483 NM_138556 NP_612566 A/G T118A plus 28459746 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35844 rs16906079 TLR4 7099 9 117554483 NM_138556 NP_612566 A/G T118A plus 28459747 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 9q32-q33 toll-like receptor 4 35845 rs16906079 TLR4 7099 9 117554483 NM_138556 NP_612566 A/G T118A plus 28459747 1334 KYUGEN JPK Japanese (110) 220 0.02 123 by freq 9q32-q33 toll-like receptor 4 35846 rs16906628 SLC6A5 9152 11 20632895 NM_004211 NP_004202 A/G G767R plus 24147975 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11p15.2-p15.1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" 35847 rs16906628 SLC6A5 9152 11 20632895 NM_004211 NP_004202 A/G G767R plus 24147975 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.2-p15.1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" 35848 rs16906628 SLC6A5 9152 11 20632895 NM_004211 NP_004202 A/G G767R plus 24147975 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 11p15.2-p15.1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" 35849 rs16906862 SYK 6850 9 90685869 NM_003177 NP_003168 A/G R45H plus 23454066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 9q22 spleen tyrosine kinase 35850 rs16906862 SYK 6850 9 90685869 NM_003177 NP_003168 A/G R45H plus 23454066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 9q22 spleen tyrosine kinase 35851 rs16906862 SYK 6850 9 90685869 NM_003177 NP_003168 A/G R45H plus 23454066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9q22 spleen tyrosine kinase 35852 rs16907980 XLKD1 10894 11 10538680 NM_006691 NP_006682 A/G T214I plus 23564196 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15 extracellular link domain containing 1 35853 rs16907980 XLKD1 10894 11 10538680 NM_006691 NP_006682 A/G T214I plus 23564196 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 11p15 extracellular link domain containing 1 35854 rs16907980 XLKD1 10894 11 10538680 NM_006691 NP_006682 A/G T214I plus 23564196 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15 extracellular link domain containing 1 35855 rs16908114 MMP26 56547 11 4970042 NM_021801 NP_068573 A/G I260M plus 23551846 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15 matrix metalloproteinase 26 35856 rs16908114 MMP26 56547 11 4970042 NM_021801 NP_068573 A/G I260M plus 23551846 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15 matrix metalloproteinase 26 35857 rs16908114 MMP26 56547 11 4970042 NM_021801 NP_068573 A/G I260M plus 23551846 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15 matrix metalloproteinase 26 35858 rs16909422 OR52B2 255725 11 6147819 XM_171528 XP_171528 A/T F105Y plus 23529674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily B, member 2" 35859 rs16909422 OR52B2 255725 11 6147819 XM_171528 XP_171528 A/T F105Y plus 23529674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily B, member 2" 35860 rs16909422 OR52B2 255725 11 6147819 XM_171528 XP_171528 A/T F105Y plus 23529674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily B, member 2" 35861 rs16909440 OR52E2 119678 11 5037420 XM_061610 XP_061610 C/T N5S plus 24071256 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 35862 rs16909440 OR52E2 119678 11 5037420 XM_061610 XP_061610 C/T N5S plus 24071256 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 35863 rs16909440 OR52E2 119678 11 5037420 XM_061610 XP_061610 C/T N5S plus 24071256 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 2" 35864 rs16909677 PTPDC1 138639 9 93940277 NM_152422 NP_689635 A/T L623Q plus 24021742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35865 rs16909677 PTPDC1 138639 9 93940277 NM_152422 NP_689635 A/T L623Q plus 24021742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35866 rs16909677 PTPDC1 138639 9 93940277 NM_152422 NP_689635 A/T L623Q plus 24021742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35867 rs16909677 PTPDC1 138639 9 93940277 NM_177995 NP_818931 A/T L571Q plus 24021742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35868 rs16909677 PTPDC1 138639 9 93940277 NM_177995 NP_818931 A/T L571Q plus 24021742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35869 rs16909677 PTPDC1 138639 9 93940277 NM_177995 NP_818931 A/T L571Q plus 24021742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 9q22.32 protein tyrosine phosphatase domain containing 1 35870 rs16909873 PTCH 5727 9 95289248 NM_000264 NP_000255 A/G P1282L plus 23557349 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q22.3 patched homolog (Drosophila) 35871 rs16909873 PTCH 5727 9 95289248 NM_000264 NP_000255 A/G P1282L plus 23557349 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 9q22.3 patched homolog (Drosophila) 35872 rs16909873 PTCH 5727 9 95289248 NM_000264 NP_000255 A/G P1282L plus 23557349 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q22.3 patched homolog (Drosophila) 35873 rs16910239 C5 727 9 120805480 NM_001735 NP_001726 G/T E1437D plus 23677048 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 9q33-q34 complement component 5 35874 rs16910239 C5 727 9 120805480 NM_001735 NP_001726 G/T E1437D plus 23677048 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9q33-q34 complement component 5 35875 rs16910239 C5 727 9 120805480 NM_001735 NP_001726 G/T E1437D plus 23677048 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9q33-q34 complement component 5 35876 rs16910245 C5 727 9 120812070 NM_001735 NP_001726 A/G V1365A plus 24146513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 9q33-q34 complement component 5 35877 rs16910245 C5 727 9 120812070 NM_001735 NP_001726 A/G V1365A plus 24146513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 9q33-q34 complement component 5 35878 rs16910245 C5 727 9 120812070 NM_001735 NP_001726 A/G V1365A plus 24146513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.03 123 by freq 9q33-q34 complement component 5 35879 rs16910526 CLECSF12 64581 12 10162354 NM_022570 NP_072092 A/C Y192X plus 23786885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35880 rs16910526 CLECSF12 64581 12 10162354 NM_022570 NP_072092 A/C Y192X plus 23786885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35881 rs16910526 CLECSF12 64581 12 10162354 NM_022570 NP_072092 A/C Y192X plus 23786885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35882 rs16910526 CLECSF12 64581 12 10162354 NM_197947 NP_922938 A/C Y238X plus 23786885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35883 rs16910526 CLECSF12 64581 12 10162354 NM_197947 NP_922938 A/C Y238X plus 23786885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35884 rs16910526 CLECSF12 64581 12 10162354 NM_197947 NP_922938 A/C Y238X plus 23786885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35885 rs16910526 CLECSF12 64581 12 10162354 NM_197950 NP_922941 A/C Y159X plus 23786885 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35886 rs16910526 CLECSF12 64581 12 10162354 NM_197950 NP_922941 A/C Y159X plus 23786885 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35887 rs16910526 CLECSF12 64581 12 10162354 NM_197950 NP_922941 A/C Y159X plus 23786885 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.2-p12.3 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12" 35888 rs16912250 SLC26A7 115111 8 92415699 NM_052832 NP_439897 A/G I215V plus 23489628 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 8q23 "solute carrier family 26, member 7" 35889 rs16912250 SLC26A7 115111 8 92415699 NM_052832 NP_439897 A/G I215V plus 23489628 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q23 "solute carrier family 26, member 7" 35890 rs16912250 SLC26A7 115111 8 92415699 NM_052832 NP_439897 A/G I215V plus 23489628 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23 "solute carrier family 26, member 7" 35891 rs16912250 SLC26A7 115111 8 92415699 NM_134266 NP_599028 A/G I215V plus 23489628 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 8q23 "solute carrier family 26, member 7" 35892 rs16912250 SLC26A7 115111 8 92415699 NM_134266 NP_599028 A/G I215V plus 23489628 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q23 "solute carrier family 26, member 7" 35893 rs16912250 SLC26A7 115111 8 92415699 NM_134266 NP_599028 A/G I215V plus 23489628 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q23 "solute carrier family 26, member 7" 35894 rs16912752 GOLGA2 2801 9 128103059 NM_004486 NP_004477 C/T M417V plus 23677168 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 9q34.13 "golgi autoantigen, golgin subfamily a, 2" 35895 rs16912752 GOLGA2 2801 9 128103059 NM_004486 NP_004477 C/T M417V plus 23677168 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.36 123 by freq 9q34.13 "golgi autoantigen, golgin subfamily a, 2" 35896 rs16912752 GOLGA2 2801 9 128103059 NM_004486 NP_004477 C/T M417V plus 23677168 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9q34.13 "golgi autoantigen, golgin subfamily a, 2" 35897 rs16913653 IKBKAP 8518 9 108733161 NM_003640 NP_003631 C/T G1013S plus 23784450 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 35898 rs16913653 IKBKAP 8518 9 108733161 NM_003640 NP_003631 C/T G1013S plus 23784450 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 35899 rs16913653 IKBKAP 8518 9 108733161 NM_003640 NP_003631 C/T G1013S plus 23784450 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q31 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" 35900 rs16913734 CTNNAL1 8727 9 108814586 NM_003798 NP_003789 C/G T424S plus 23784577 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 35901 rs16913734 CTNNAL1 8727 9 108814586 NM_003798 NP_003789 C/G T424S plus 23784577 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 35902 rs16913734 CTNNAL1 8727 9 108814586 NM_003798 NP_003789 C/G T424S plus 23784577 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q31.2 "catenin (cadherin-associated protein), alpha-like 1" 35903 rs16914094 OR52E4 390081 11 5862245 XM_372368 XP_372368 G/T F49L plus 23527620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 35904 rs16914094 OR52E4 390081 11 5862245 XM_372368 XP_372368 G/T F49L plus 23527620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 35905 rs16914094 OR52E4 390081 11 5862245 XM_372368 XP_372368 G/T F49L plus 23527620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 4" 35906 rs16914640 LLT1 29121 12 9713654 NM_013269 NP_037401 C/G N19K plus 23786029 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 12p13 lectin-like NK cell receptor 35907 rs16914640 LLT1 29121 12 9713654 NM_013269 NP_037401 C/G N19K plus 23786029 1372 PERLEGEN AFD_AFR_PANEL African American (24) 23 0.5 123 by freq 12p13 lectin-like NK cell receptor 35908 rs16914640 LLT1 29121 12 9713654 NM_013269 NP_037401 C/G N19K plus 23786029 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12p13 lectin-like NK cell receptor 35909 rs16916632 CNGB3 54714 8 87749398 NM_019098 NP_061971 C/T R203Q plus 23480070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35910 rs16916632 CNGB3 54714 8 87749398 NM_019098 NP_061971 C/T R203Q plus 23480070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35911 rs16916632 CNGB3 54714 8 87749398 NM_019098 NP_061971 C/T R203Q plus 23480070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 8q21-q22 cyclic nucleotide gated channel beta 3 35912 rs16917089 GPR109A 338442 12 121712631 NM_177551 NP_808219 C/T V27A minus 24818467 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 12q24.31 G protein-coupled receptor 109A 35913 rs16917454 TSCOT 57864 9 112731420 NM_033051 NP_149040 A/G A366V plus 23512491 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q32 thymic stromal co-transporter 35914 rs16917454 TSCOT 57864 9 112731420 NM_033051 NP_149040 A/G A366V plus 23512491 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 9q32 thymic stromal co-transporter 35915 rs16917454 TSCOT 57864 9 112731420 NM_033051 NP_149040 A/G A366V plus 23512491 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q32 thymic stromal co-transporter 35916 rs16918105 FAT3 120114 11 92172705 XM_061871 XP_061871 A/G N789S plus 24103596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 35917 rs16918105 FAT3 120114 11 92172705 XM_061871 XP_061871 A/G N789S plus 24103596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 35918 rs16918105 FAT3 120114 11 92172705 XM_061871 XP_061871 A/G N789S plus 24103596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q14.3 FAT tumor suppressor homolog 3 (Drosophila) 35919 rs16918128 COL15A1 1306 9 98846858 NM_001855 NP_001846 A/G A442T plus 24043035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 9q21-q22 "collagen, type XV, alpha 1" 35920 rs16918128 COL15A1 1306 9 98846858 NM_001855 NP_001846 A/G A442T plus 24043035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9q21-q22 "collagen, type XV, alpha 1" 35921 rs16918128 COL15A1 1306 9 98846858 NM_001855 NP_001846 A/G A442T plus 24043035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 9q21-q22 "collagen, type XV, alpha 1" 35922 rs16919049 OR10A4 283297 11 6855190 NM_207186 NP_997069 C/T L246F plus 23537441 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 35923 rs16919049 OR10A4 283297 11 6855190 NM_207186 NP_997069 C/T L246F plus 23537441 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 35924 rs16919049 OR10A4 283297 11 6855190 NM_207186 NP_997069 C/T L246F plus 23537441 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 10, subfamily A, member 4" 35925 rs16919417 OR2D2 120776 11 6870116 XM_062286 XP_062286 G/T C64X plus 23537657 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 35926 rs16919417 OR2D2 120776 11 6870116 XM_062286 XP_062286 G/T C64X plus 23537657 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 35927 rs16919417 OR2D2 120776 11 6870116 XM_062286 XP_062286 G/T C64X plus 23537657 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 11p15.4 "olfactory receptor, family 2, subfamily D, member 2" 35928 rs16919452 ZFH4 79776 8 77927953 NM_024721 NP_078997 A/G I2036V plus 24083174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 8q21.11 zinc finger homeodomain 4 35929 rs16919452 ZFH4 79776 8 77927953 NM_024721 NP_078997 A/G I2036V plus 24083174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8q21.11 zinc finger homeodomain 4 35930 rs16919452 ZFH4 79776 8 77927953 NM_024721 NP_078997 A/G I2036V plus 24083174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 8q21.11 zinc finger homeodomain 4 35931 rs16919579 MRPS28 28957 8 81077877 NM_014018 NP_054737 A/G R103W plus 23590296 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q21.1-q21.2 mitochondrial ribosomal protein S28 35932 rs16919579 MRPS28 28957 8 81077877 NM_014018 NP_054737 A/G R103W plus 23590296 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 8q21.1-q21.2 mitochondrial ribosomal protein S28 35933 rs16919579 MRPS28 28957 8 81077877 NM_014018 NP_054737 A/G R103W plus 23590296 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q21.1-q21.2 mitochondrial ribosomal protein S28 35934 rs16919923 LYPLA1 10434 8 55127773 NM_006330 NP_006321 A/G P153S plus 23559512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 8q11.23 lysophospholipase I 35935 rs16919923 LYPLA1 10434 8 55127773 NM_006330 NP_006321 A/G P153S plus 23559512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 8q11.23 lysophospholipase I 35936 rs16919923 LYPLA1 10434 8 55127773 NM_006330 NP_006321 A/G P153S plus 23559512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q11.23 lysophospholipase I 35937 rs16921449 SLC1A1 6505 9 4534624 NM_004170 NP_004161 A/T F50Y plus 23378015 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p24 "solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1" 35938 rs16921449 SLC1A1 6505 9 4534624 NM_004170 NP_004161 A/T F50Y plus 23378015 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 9p24 "solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1" 35939 rs16921449 SLC1A1 6505 9 4534624 NM_004170 NP_004161 A/T F50Y plus 23378015 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p24 "solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1" 35940 rs16921697 NALP14 338323 11 7016668 NM_176822 NP_789792 A/G K92R plus 24062929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 35941 rs16921697 NALP14 338323 11 7016668 NM_176822 NP_789792 A/G K92R plus 24062929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 35942 rs16921697 NALP14 338323 11 7016668 NM_176822 NP_789792 A/G K92R plus 24062929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 35943 rs16922259 NCOA6IP 96764 8 56874210 NM_024831 NP_079107 A/G V576I plus 23573301 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q11 nuclear receptor coactivator 6 interacting protein 35944 rs16922259 NCOA6IP 96764 8 56874210 NM_024831 NP_079107 A/G V576I plus 23573301 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8q11 nuclear receptor coactivator 6 interacting protein 35945 rs16922259 NCOA6IP 96764 8 56874210 NM_024831 NP_079107 A/G V576I plus 23573301 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q11 nuclear receptor coactivator 6 interacting protein 35946 rs16923590 NSMAF 8439 8 59670688 NM_003580 NP_003571 C/T Y626C plus 23981128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q12-q13 neutral sphingomyelinase (N-SMase) activation associated factor 35947 rs16923590 NSMAF 8439 8 59670688 NM_003580 NP_003571 C/T Y626C plus 23981128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q12-q13 neutral sphingomyelinase (N-SMase) activation associated factor 35948 rs16923590 NSMAF 8439 8 59670688 NM_003580 NP_003571 C/T Y626C plus 23981128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 by freq 8q12-q13 neutral sphingomyelinase (N-SMase) activation associated factor 35949 rs16924002 GYS2 2998 12 21603355 NM_021957 NP_068776 C/G D415E plus 23424725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12p12.2 glycogen synthase 2 (liver) 35950 rs16924002 GYS2 2998 12 21603355 NM_021957 NP_068776 C/G D415E plus 23424725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 12p12.2 glycogen synthase 2 (liver) 35951 rs16924002 GYS2 2998 12 21603355 NM_021957 NP_068776 C/G D415E plus 23424725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p12.2 glycogen synthase 2 (liver) 35952 rs16924906 ARHGAP21 57584 10 24914339 NM_020824 NP_065875 A/G E1628K minus 24813579 1303 SEQUENOM CEPH CEPH (92) 184 0.44 123 by freq 10p12.31 Rho GTPase activating protein 21 35953 rs16925541 CXXC6 80312 10 70075545 NM_030625 NP_085128 A/G N1018S plus 24095129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 10q21 CXXC finger 6 35954 rs16925541 CXXC6 80312 10 70075545 NM_030625 NP_085128 A/G N1018S plus 24095129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q21 CXXC finger 6 35955 rs16925541 CXXC6 80312 10 70075545 NM_030625 NP_085128 A/G N1018S plus 24095129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 10q21 CXXC finger 6 35956 rs16926732 OR52E5 390082 11 5879208 XM_372369 XP_372369 A/G D213G plus 24056461 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 35957 rs16926732 OR52E5 390082 11 5879208 XM_372369 XP_372369 A/G D213G plus 24056461 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 35958 rs16926732 OR52E5 390082 11 5879208 XM_372369 XP_372369 A/G D213G plus 24056461 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 35959 rs16926948 OVTN 341277 11 7673833 NM_198185 NP_937828 C/T G381E plus 23810021 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 11p15.4 oviductin protease 35960 rs16926948 OVTN 341277 11 7673833 NM_198185 NP_937828 C/T G381E plus 23810021 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11p15.4 oviductin protease 35961 rs16926948 OVTN 341277 11 7673833 NM_198185 NP_937828 C/T G381E plus 23810021 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 oviductin protease 35962 rs16927037 DMRT3 58524 9 980653 NM_021240 NP_067063 G/T G356V plus 23923591 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 3 35963 rs16927037 DMRT3 58524 9 980653 NM_021240 NP_067063 G/T G356V plus 23923591 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 3 35964 rs16927037 DMRT3 58524 9 980653 NM_021240 NP_067063 G/T G356V plus 23923591 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.08 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 3 35965 rs16927649 OLFML2A 169611 9 124649719 NM_182487 NP_872293 A/G R211Q plus 24068428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 9q34.11 olfactomedin-like 2A 35966 rs16927649 OLFML2A 169611 9 124649719 NM_182487 NP_872293 A/G R211Q plus 24068428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 by freq 9q34.11 olfactomedin-like 2A 35967 rs16927649 OLFML2A 169611 9 124649719 NM_182487 NP_872293 A/G R211Q plus 24068428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 9q34.11 olfactomedin-like 2A 35968 rs16927965 RAB9P40 10244 9 125055208 NM_005833 NP_005824 A/G H73Y minus 24527371 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 9q34.11 Rab9 effector p40 35969 rs16927965 RAB9P40 10244 9 125055208 NM_005833 NP_005824 A/G H73Y minus 24527371 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 9q34.11 Rab9 effector p40 35970 rs16927965 RAB9P40 10244 9 125055208 NM_005833 NP_005824 A/G H73Y minus 24527371 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9q34.11 Rab9 effector p40 35971 rs16927965 RAB9P40 10244 9 125055208 NM_005833 NP_005824 A/G H73Y minus 24791611 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 by freq 9q34.11 Rab9 effector p40 35972 rs16929093 RAG2 5897 11 36571417 NM_000536 NP_000527 C/T E293G plus 23607198 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p13 recombination activating gene 2 35973 rs16929093 RAG2 5897 11 36571417 NM_000536 NP_000527 C/T E293G plus 23607198 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p13 recombination activating gene 2 35974 rs16929093 RAG2 5897 11 36571417 NM_000536 NP_000527 C/T E293G plus 23607198 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p13 recombination activating gene 2 35975 rs16929374 TYRP1 7306 9 12692334 NM_000550 NP_000541 A/G R326H plus 23414456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p23 tyrosinase-related protein 1 35976 rs16929374 TYRP1 7306 9 12692334 NM_000550 NP_000541 A/G R326H plus 23414456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 9p23 tyrosinase-related protein 1 35977 rs16929374 TYRP1 7306 9 12692334 NM_000550 NP_000541 A/G R326H plus 23414456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p23 tyrosinase-related protein 1 35978 rs16929870 ZNF79 7633 9 127286735 NM_007135 NP_009066 A/G S401N plus 24815240 1303 SEQUENOM CEPH CEPH (92) 184 0.41 123 by freq 9q34 zinc finger protein 79 (pT7) 35979 rs16930426 ODF2 4957 9 128340362 NM_002540 NP_002531 C/G T686S plus 23579613 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q34.11 outer dense fiber of sperm tails 2 35980 rs16930426 ODF2 4957 9 128340362 NM_002540 NP_002531 C/G T686S plus 23579613 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 by freq 9q34.11 outer dense fiber of sperm tails 2 35981 rs16930426 ODF2 4957 9 128340362 NM_002540 NP_002531 C/G T686S plus 23579613 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q34.11 outer dense fiber of sperm tails 2 35982 rs16930982 OR51I1 390063 11 5418950 XM_372356 XP_372356 C/T R124H plus 24073513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35983 rs16930982 OR51I1 390063 11 5418950 XM_372356 XP_372356 C/T R124H plus 24073513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35984 rs16930982 OR51I1 390063 11 5418950 XM_372356 XP_372356 C/T R124H plus 24073513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35985 rs16930998 OR51I1 390063 11 5419278 XM_372356 XP_372356 A/G Q15X plus 24073516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35986 rs16930998 OR51I1 390063 11 5419278 XM_372356 XP_372356 A/G Q15X plus 24073516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35987 rs16930998 OR51I1 390063 11 5419278 XM_372356 XP_372356 A/G Q15X plus 24073516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 1" 35988 rs16931292 OR51I2 390064 11 5431746 XM_372357 XP_372357 C/G R151P plus 24073706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 35989 rs16931292 OR51I2 390064 11 5431746 XM_372357 XP_372357 C/G R151P plus 24073706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 35990 rs16931292 OR51I2 390064 11 5431746 XM_372357 XP_372357 C/G R151P plus 24073706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily I, member 2" 35991 rs16931549 DNAI1 27019 9 34475237 NM_012144 NP_036276 C/T A60V plus 23553787 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p21-p13 "dynein, axonemal, intermediate polypeptide 1" 35992 rs16931549 DNAI1 27019 9 34475237 NM_012144 NP_036276 C/T A60V plus 23553787 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 9p21-p13 "dynein, axonemal, intermediate polypeptide 1" 35993 rs16931549 DNAI1 27019 9 34475237 NM_012144 NP_036276 C/T A60V plus 23553787 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p21-p13 "dynein, axonemal, intermediate polypeptide 1" 35994 rs16931676 GALNT8 26290 12 4723967 NM_017417 NP_059113 A/G E234K plus 23779779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 35995 rs16931676 GALNT8 26290 12 4723967 NM_017417 NP_059113 A/G E234K plus 23779779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 35996 rs16931676 GALNT8 26290 12 4723967 NM_017417 NP_059113 A/G E234K plus 23779779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) 35997 rs16931736 PRB4 5545 12 11352559 NM_002723 NP_002714 C/G A209P plus 23418183 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 12p13.2 proline-rich protein BstNI subfamily 4 35998 rs16931736 PRB4 5545 12 11352559 NM_002723 NP_002714 C/G A209P plus 23418183 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.29 123 by freq 12p13.2 proline-rich protein BstNI subfamily 4 35999 rs16931736 PRB4 5545 12 11352559 NM_002723 NP_002714 C/G A209P plus 23418183 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 12p13.2 proline-rich protein BstNI subfamily 4 36000 rs16931745 TNFSF15 9966 9 114632712 NM_005118 NP_005109 A/T F110L plus 24057388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q32 "tumor necrosis factor (ligand) superfamily, member 15" 36001 rs16931745 TNFSF15 9966 9 114632712 NM_005118 NP_005109 A/T F110L plus 24057388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9q32 "tumor necrosis factor (ligand) superfamily, member 15" 36002 rs16931745 TNFSF15 9966 9 114632712 NM_005118 NP_005109 A/T F110L plus 24057388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 9q32 "tumor necrosis factor (ligand) superfamily, member 15" 36003 rs16931996 DUSP13 51207 10 76524469 NM_016364 NP_057448 C/G R190G plus 23635266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q22.3 dual specificity phosphatase 13 36004 rs16931996 DUSP13 51207 10 76524469 NM_016364 NP_057448 C/G R190G plus 23635266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 10q22.3 dual specificity phosphatase 13 36005 rs16931996 DUSP13 51207 10 76524469 NM_016364 NP_057448 C/G R190G plus 23635266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q22.3 dual specificity phosphatase 13 36006 rs16932004 DUSP13 51207 10 76525548 NM_016364 NP_057448 C/T R62Q plus 24121733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q22.3 dual specificity phosphatase 13 36007 rs16932004 DUSP13 51207 10 76525548 NM_016364 NP_057448 C/T R62Q plus 24121733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 10q22.3 dual specificity phosphatase 13 36008 rs16932004 DUSP13 51207 10 76525548 NM_016364 NP_057448 C/T R62Q plus 24121733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 10q22.3 dual specificity phosphatase 13 36009 rs16932374 VWF 7450 12 6026211 NM_000552 NP_000543 C/T M740I plus 23713960 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12p13.3 von Willebrand factor 36010 rs16932374 VWF 7450 12 6026211 NM_000552 NP_000543 C/T M740I plus 23713960 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 12p13.3 von Willebrand factor 36011 rs16932374 VWF 7450 12 6026211 NM_000552 NP_000543 C/T M740I plus 23713960 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p13.3 von Willebrand factor 36012 rs16932768 CHD4 1108 12 6558291 NM_001273 NP_001264 C/T I1655V plus 23783162 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 by freq 12p13 chromodomain helicase DNA binding protein 4 36013 rs16932768 CHD4 1108 12 6558291 NM_001273 NP_001264 C/T I1655V plus 23783162 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 12p13 chromodomain helicase DNA binding protein 4 36014 rs16932768 CHD4 1108 12 6558291 NM_001273 NP_001264 C/T I1655V plus 23783162 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 12p13 chromodomain helicase DNA binding protein 4 36015 rs16932912 RECK 8434 9 36077876 NM_021111 NP_066934 A/G V275I plus 24086213 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 9p13-p12 reversion-inducing-cysteine-rich protein with kazal motifs 36016 rs16932912 RECK 8434 9 36077876 NM_021111 NP_066934 A/G V275I plus 24086213 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 9p13-p12 reversion-inducing-cysteine-rich protein with kazal motifs 36017 rs16932912 RECK 8434 9 36077876 NM_021111 NP_066934 A/G V275I plus 24086213 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 9p13-p12 reversion-inducing-cysteine-rich protein with kazal motifs 36018 rs16932941 GNB3 2784 12 6825125 NM_002075 NP_002066 A/G G272S plus 24796019 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 36019 rs16932941 GNB3 2784 12 6825125 NM_002075 NP_002066 A/G G272S plus 24796440 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 36020 rs16932941 GNB3 2784 12 6825125 NM_002075 NP_002066 A/G G272S plus 24811747 1303 SEQUENOM CEPH CEPH (92) 184 0.19 123 by freq 12p13 "guanine nucleotide binding protein (G protein), beta polypeptide 3" 36021 rs16933591 ASTN2 23245 9 116329244 NM_014010 NP_054729 C/T V1098I plus 23676863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q33.2 astrotactin 2 36022 rs16933591 ASTN2 23245 9 116329244 NM_014010 NP_054729 C/T V1098I plus 23676863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 9q33.2 astrotactin 2 36023 rs16933591 ASTN2 23245 9 116329244 NM_014010 NP_054729 C/T V1098I plus 23676863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q33.2 astrotactin 2 36024 rs16933591 ASTN2 23245 9 116329244 NM_198186 NP_937829 C/T V1145I plus 23676863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q33.2 astrotactin 2 36025 rs16933591 ASTN2 23245 9 116329244 NM_198186 NP_937829 C/T V1145I plus 23676863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 9q33.2 astrotactin 2 36026 rs16933591 ASTN2 23245 9 116329244 NM_198186 NP_937829 C/T V1145I plus 23676863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q33.2 astrotactin 2 36027 rs16933591 ASTN2 23245 9 116329244 NM_198187 NP_937830 C/T V1149I plus 23676863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q33.2 astrotactin 2 36028 rs16933591 ASTN2 23245 9 116329244 NM_198187 NP_937830 C/T V1149I plus 23676863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 9q33.2 astrotactin 2 36029 rs16933591 ASTN2 23245 9 116329244 NM_198187 NP_937830 C/T V1149I plus 23676863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q33.2 astrotactin 2 36030 rs16933591 ASTN2 23245 9 116329244 NM_198188 NP_937831 C/T V201I plus 23676863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9q33.2 astrotactin 2 36031 rs16933591 ASTN2 23245 9 116329244 NM_198188 NP_937831 C/T V201I plus 23676863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 9q33.2 astrotactin 2 36032 rs16933591 ASTN2 23245 9 116329244 NM_198188 NP_937831 C/T V201I plus 23676863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q33.2 astrotactin 2 36033 rs16933844 TRIM34 53840 11 5621260 NM_021616 NP_067629 G/T N404K plus 23561060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11p15 tripartite motif-containing 34 36034 rs16933844 TRIM34 53840 11 5621260 NM_021616 NP_067629 G/T N404K plus 23561060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 by freq 11p15 tripartite motif-containing 34 36035 rs16933844 TRIM34 53840 11 5621260 NM_021616 NP_067629 G/T N404K plus 23561060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 11p15 tripartite motif-containing 34 36036 rs16933844 TRIM34 53840 11 5621260 NM_130389 NP_569073 G/T N159K plus 23561060 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11p15 tripartite motif-containing 34 36037 rs16933844 TRIM34 53840 11 5621260 NM_130389 NP_569073 G/T N159K plus 23561060 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 by freq 11p15 tripartite motif-containing 34 36038 rs16933844 TRIM34 53840 11 5621260 NM_130389 NP_569073 G/T N159K plus 23561060 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 11p15 tripartite motif-containing 34 36039 rs16934950 SAA1 6288 11 18247913 NM_000331 NP_000322 A/G E102K plus 24819878 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 11p15.1 serum amyloid A1 36040 rs16934950 SAA1 6288 11 18247913 NM_199161 NP_954630 A/G E102K plus 24819878 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 11p15.1 serum amyloid A1 36041 rs16935065 VEST1 116328 8 69862310 NM_052958 NP_443190 A/G A401T plus 23579456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 8q13 vestibule-1 protein 36042 rs16935065 VEST1 116328 8 69862310 NM_052958 NP_443190 A/G A401T plus 23579456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 8q13 vestibule-1 protein 36043 rs16935065 VEST1 116328 8 69862310 NM_052958 NP_443190 A/G A401T plus 23579456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 8q13 vestibule-1 protein 36044 rs16935246 SAA1 6288 11 18247932 NM_000331 NP_000322 A/G K108R plus 24819882 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 11p15.1 serum amyloid A1 36045 rs16935246 SAA1 6288 11 18247932 NM_199161 NP_954630 A/G K108R plus 24819882 1303 SEQUENOM CEPH CEPH (92) 184 0.42 123 by freq 11p15.1 serum amyloid A1 36046 rs16935295 UBAP2 55833 9 33917880 NM_018449 NP_060919 C/G M762I plus 23551309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p13.2 ubiquitin associated protein 2 36047 rs16935295 UBAP2 55833 9 33917880 NM_018449 NP_060919 C/G M762I plus 23551309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 9p13.2 ubiquitin associated protein 2 36048 rs16935295 UBAP2 55833 9 33917880 NM_018449 NP_060919 C/G M762I plus 23551309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p13.2 ubiquitin associated protein 2 36049 rs16935295 UBAP2 55833 9 33917880 NM_020867 NP_065918 C/G M709I plus 23551309 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p13.2 ubiquitin associated protein 2 36050 rs16935295 UBAP2 55833 9 33917880 NM_020867 NP_065918 C/G M709I plus 23551309 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 9p13.2 ubiquitin associated protein 2 36051 rs16935295 UBAP2 55833 9 33917880 NM_020867 NP_065918 C/G M709I plus 23551309 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p13.2 ubiquitin associated protein 2 36052 rs16935436 LDHC 3948 11 18429104 NM_002301 NP_002292 C/G E285Q plus 23595935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36053 rs16935436 LDHC 3948 11 18429104 NM_002301 NP_002292 C/G E285Q plus 23595935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36054 rs16935436 LDHC 3948 11 18429104 NM_002301 NP_002292 C/G E285Q plus 23595935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36055 rs16935436 LDHC 3948 11 18429104 NM_017448 NP_059144 C/G E285Q plus 23595935 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36056 rs16935436 LDHC 3948 11 18429104 NM_017448 NP_059144 C/G E285Q plus 23595935 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36057 rs16935436 LDHC 3948 11 18429104 NM_017448 NP_059144 C/G E285Q plus 23595935 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.5-p15.3 lactate dehydrogenase C 36058 rs16935457 UBAP1 51271 9 34232094 NM_016525 NP_057609 A/T N357K plus 24070910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p22-p21 ubiquitin associated protein 1 36059 rs16935457 UBAP1 51271 9 34232094 NM_016525 NP_057609 A/T N357K plus 24070910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9p22-p21 ubiquitin associated protein 1 36060 rs16935457 UBAP1 51271 9 34232094 NM_016525 NP_057609 A/T N357K plus 24070910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 9p22-p21 ubiquitin associated protein 1 36061 rs16937251 NAV2 89797 11 19911770 NM_145117 NP_660093 C/G Q468H plus 24102810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11p15.1 neuron navigator 2 36062 rs16937251 NAV2 89797 11 19911770 NM_145117 NP_660093 C/G Q468H plus 24102810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.1 neuron navigator 2 36063 rs16937251 NAV2 89797 11 19911770 NM_145117 NP_660093 C/G Q468H plus 24102810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 11p15.1 neuron navigator 2 36064 rs16937251 NAV2 89797 11 19911770 NM_182964 NP_892009 C/G Q491H plus 24102810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11p15.1 neuron navigator 2 36065 rs16937251 NAV2 89797 11 19911770 NM_182964 NP_892009 C/G Q491H plus 24102810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p15.1 neuron navigator 2 36066 rs16937251 NAV2 89797 11 19911770 NM_182964 NP_892009 C/G Q491H plus 24102810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 11p15.1 neuron navigator 2 36067 rs16937417 ANKRD30A 91074 10 37487451 NM_052997 NP_443723 A/G T555A plus 24107624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10p11.21 ankyrin repeat domain 30A 36068 rs16937417 ANKRD30A 91074 10 37487451 NM_052997 NP_443723 A/G T555A plus 24107624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 10p11.21 ankyrin repeat domain 30A 36069 rs16937417 ANKRD30A 91074 10 37487451 NM_052997 NP_443723 A/G T555A plus 24107624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 10p11.21 ankyrin repeat domain 30A 36070 rs16937932 DOCK8 81704 9 386836 NM_203447 NP_982272 C/T R940W plus 23220800 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 9p24.3 dedicator of cytokinesis 8 36071 rs16937932 DOCK8 81704 9 386836 NM_203447 NP_982272 C/T R940W plus 23220800 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9p24.3 dedicator of cytokinesis 8 36072 rs16937932 DOCK8 81704 9 386836 NM_203447 NP_982272 C/T R940W plus 23220800 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 9p24.3 dedicator of cytokinesis 8 36073 rs16937976 TRPA1 8989 8 73146595 NM_007332 NP_015628 C/G R58T plus 23510228 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 8q13 "transient receptor potential cation channel, subfamily A, member 1" 36074 rs16937976 TRPA1 8989 8 73146595 NM_007332 NP_015628 C/G R58T plus 23510228 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8q13 "transient receptor potential cation channel, subfamily A, member 1" 36075 rs16937976 TRPA1 8989 8 73146595 NM_007332 NP_015628 C/G R58T plus 23510228 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 8q13 "transient receptor potential cation channel, subfamily A, member 1" 36076 rs16938324 IFNA4 3441 9 21177067 NM_021068 NP_066546 C/T T155I minus 24812376 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 by freq 9p22 "interferon, alpha 4" 36077 rs16938507 KCNB2 9312 8 74012114 NM_004770 NP_004761 A/G E657G plus 23520708 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q13.2 "potassium voltage-gated channel, Shab-related subfamily, member 2" 36078 rs16938507 KCNB2 9312 8 74012114 NM_004770 NP_004761 A/G E657G plus 23520708 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 8q13.2 "potassium voltage-gated channel, Shab-related subfamily, member 2" 36079 rs16938507 KCNB2 9312 8 74012114 NM_004770 NP_004761 A/G E657G plus 23520708 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q13.2 "potassium voltage-gated channel, Shab-related subfamily, member 2" 36080 rs16938828 JPH1 56704 8 75319353 NM_020647 NP_065698 C/G D624H plus 23550026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 8q21 junctophilin 1 36081 rs16938828 JPH1 56704 8 75319353 NM_020647 NP_065698 C/G D624H plus 23550026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8q21 junctophilin 1 36082 rs16938828 JPH1 56704 8 75319353 NM_020647 NP_065698 C/G D624H plus 23550026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q21 junctophilin 1 36083 rs16939380 ZFH4 79776 8 77930945 NM_024721 NP_078997 G/T V3033G plus 24083216 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8q21.11 zinc finger homeodomain 4 36084 rs16939380 ZFH4 79776 8 77930945 NM_024721 NP_078997 G/T V3033G plus 24083216 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8q21.11 zinc finger homeodomain 4 36085 rs16939380 ZFH4 79776 8 77930945 NM_024721 NP_078997 G/T V3033G plus 24083216 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 8q21.11 zinc finger homeodomain 4 36086 rs16939713 GFAP 2670 17 40344589 NM_002055 NP_002046 C/T D295N plus 24104459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 17q21 glial fibrillary acidic protein 36087 rs16939713 GFAP 2670 17 40344589 NM_002055 NP_002046 C/T D295N plus 24104459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17q21 glial fibrillary acidic protein 36088 rs16939713 GFAP 2670 17 40344589 NM_002055 NP_002046 C/T D295N plus 24104459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 17q21 glial fibrillary acidic protein 36089 rs16939743 DUOX1 53905 15 43230188 NM_017434 NP_059130 C/T I962T plus 23463156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.3 dual oxidase 1 36090 rs16939743 DUOX1 53905 15 43230188 NM_017434 NP_059130 C/T I962T plus 23463156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 15q15.3 dual oxidase 1 36091 rs16939743 DUOX1 53905 15 43230188 NM_017434 NP_059130 C/T I962T plus 23463156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 15q15.3 dual oxidase 1 36092 rs16939743 DUOX1 53905 15 43230188 NM_175940 NP_787954 C/T I962T plus 23463156 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.3 dual oxidase 1 36093 rs16939743 DUOX1 53905 15 43230188 NM_175940 NP_787954 C/T I962T plus 23463156 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 15q15.3 dual oxidase 1 36094 rs16939743 DUOX1 53905 15 43230188 NM_175940 NP_787954 C/T I962T plus 23463156 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 15q15.3 dual oxidase 1 36095 rs16939752 DUOX1 53905 15 43231425 NM_017434 NP_059130 C/T C1026R plus 24019640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 15q15.3 dual oxidase 1 36096 rs16939752 DUOX1 53905 15 43231425 NM_017434 NP_059130 C/T C1026R plus 24019640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 15q15.3 dual oxidase 1 36097 rs16939752 DUOX1 53905 15 43231425 NM_017434 NP_059130 C/T C1026R plus 24019640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 15q15.3 dual oxidase 1 36098 rs16939752 DUOX1 53905 15 43231425 NM_175940 NP_787954 C/T C1026R plus 24019640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 15q15.3 dual oxidase 1 36099 rs16939752 DUOX1 53905 15 43231425 NM_175940 NP_787954 C/T C1026R plus 24019640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 15q15.3 dual oxidase 1 36100 rs16939752 DUOX1 53905 15 43231425 NM_175940 NP_787954 C/T C1026R plus 24019640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 15q15.3 dual oxidase 1 36101 rs16939879 ACBD4 79777 17 40571998 NM_024722 NP_078998 A/G Q245R plus 23609917 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 17q21.31 acyl-Coenzyme A binding domain containing 4 36102 rs16939879 ACBD4 79777 17 40571998 NM_024722 NP_078998 A/G Q245R plus 23609917 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.19 123 by freq 17q21.31 acyl-Coenzyme A binding domain containing 4 36103 rs16939879 ACBD4 79777 17 40571998 NM_024722 NP_078998 A/G Q245R plus 23609917 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 17q21.31 acyl-Coenzyme A binding domain containing 4 36104 rs16939904 USP30 84749 12 107983489 NM_032663 NP_116052 A/G H348R plus 23948823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 by freq 12q24.12 ubiquitin specific protease 30 36105 rs16939904 USP30 84749 12 107983489 NM_032663 NP_116052 A/G H348R plus 23948823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 12q24.12 ubiquitin specific protease 30 36106 rs16939904 USP30 84749 12 107983489 NM_032663 NP_116052 A/G H348R plus 23948823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.24 123 by freq 12q24.12 ubiquitin specific protease 30 36107 rs16940050 SCNN1B 6338 16 23296041 NM_000336 NP_000327 G/T G442V plus 23373620 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p12.2-p12.1 "sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)" 36108 rs16940050 SCNN1B 6338 16 23296041 NM_000336 NP_000327 G/T G442V plus 23373620 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 16p12.2-p12.1 "sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)" 36109 rs16940050 SCNN1B 6338 16 23296041 NM_000336 NP_000327 G/T G442V plus 23373620 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p12.2-p12.1 "sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)" 36110 rs16940050 SCNN1B 6338 16 23296041 NM_000336 NP_000327 G/T G442V plus 24796507 1303 SEQUENOM CEPH CEPH (92) 184 0.19 123 by freq 16p12.2-p12.1 "sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)" 36111 rs16940094 COG7 91949 16 23316941 NM_153603 NP_705831 A/G T605M plus 23373722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p12.3 component of oligomeric golgi complex 7 36112 rs16940094 COG7 91949 16 23316941 NM_153603 NP_705831 A/G T605M plus 23373722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 16p12.3 component of oligomeric golgi complex 7 36113 rs16940094 COG7 91949 16 23316941 NM_153603 NP_705831 A/G T605M plus 23373722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 16p12.3 component of oligomeric golgi complex 7 36114 rs16941036 CCNB2 9133 15 57193966 NM_004701 NP_004692 C/T M100T plus 23811516 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q21.3 cyclin B2 36115 rs16941036 CCNB2 9133 15 57193966 NM_004701 NP_004692 C/T M100T plus 23811516 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 15q21.3 cyclin B2 36116 rs16941036 CCNB2 9133 15 57193966 NM_004701 NP_004692 C/T M100T plus 23811516 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q21.3 cyclin B2 36117 rs16941623 ZNF519 162655 18 14114427 NM_145287 NP_660330 A/G W18R plus 23465928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.21 zinc finger protein 519 36118 rs16941623 ZNF519 162655 18 14114427 NM_145287 NP_660330 A/G W18R plus 23465928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18p11.21 zinc finger protein 519 36119 rs16941623 ZNF519 162655 18 14114427 NM_145287 NP_660330 A/G W18R plus 23465928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.21 zinc finger protein 519 36120 rs16941677 MYL4 4635 17 42654813 NM_002476 NP_002467 A/T N186Y plus 23616089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q21-qter "myosin, light polypeptide 4, alkali; atrial, embryonic" 36121 rs16941677 MYL4 4635 17 42654813 NM_002476 NP_002467 A/T N186Y plus 23616089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 17q21-qter "myosin, light polypeptide 4, alkali; atrial, embryonic" 36122 rs16941677 MYL4 4635 17 42654813 NM_002476 NP_002467 A/T N186Y plus 23616089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21-qter "myosin, light polypeptide 4, alkali; atrial, embryonic" 36123 rs16941888 MRPL46 26589 15 86809921 NM_022163 NP_071446 A/G H106Y plus 23519203 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q24-q25 mitochondrial ribosomal protein L46 36124 rs16941888 MRPL46 26589 15 86809921 NM_022163 NP_071446 A/G H106Y plus 23519203 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 15q24-q25 mitochondrial ribosomal protein L46 36125 rs16941888 MRPL46 26589 15 86809921 NM_022163 NP_071446 A/G H106Y plus 23519203 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q24-q25 mitochondrial ribosomal protein L46 36126 rs16941904 MRPS11 64963 15 86811980 NM_022839 NP_073750 C/T R10W plus 23519288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 mitochondrial ribosomal protein S11 36127 rs16941904 MRPS11 64963 15 86811980 NM_022839 NP_073750 C/T R10W plus 23519288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 15q25 mitochondrial ribosomal protein S11 36128 rs16941904 MRPS11 64963 15 86811980 NM_022839 NP_073750 C/T R10W plus 23519288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q25 mitochondrial ribosomal protein S11 36129 rs16941904 MRPS11 64963 15 86811980 NM_176805 NP_789775 C/T R10W plus 23519288 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 mitochondrial ribosomal protein S11 36130 rs16941904 MRPS11 64963 15 86811980 NM_176805 NP_789775 C/T R10W plus 23519288 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 15q25 mitochondrial ribosomal protein S11 36131 rs16941904 MRPS11 64963 15 86811980 NM_176805 NP_789775 C/T R10W plus 23519288 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q25 mitochondrial ribosomal protein S11 36132 rs16941907 MRPS11 64963 15 86812230 NM_022839 NP_073750 C/G Q51H plus 23519297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 mitochondrial ribosomal protein S11 36133 rs16941907 MRPS11 64963 15 86812230 NM_022839 NP_073750 C/G Q51H plus 23519297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q25 mitochondrial ribosomal protein S11 36134 rs16941907 MRPS11 64963 15 86812230 NM_022839 NP_073750 C/G Q51H plus 23519297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q25 mitochondrial ribosomal protein S11 36135 rs16941907 MRPS11 64963 15 86812230 NM_176805 NP_789775 C/G Q51H plus 23519297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 mitochondrial ribosomal protein S11 36136 rs16941907 MRPS11 64963 15 86812230 NM_176805 NP_789775 C/G Q51H plus 23519297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q25 mitochondrial ribosomal protein S11 36137 rs16941907 MRPS11 64963 15 86812230 NM_176805 NP_789775 C/G Q51H plus 23519297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q25 mitochondrial ribosomal protein S11 36138 rs16942219 TAF4B 6875 18 22108772 XM_290809 XP_290809 A/G I410V plus 23801124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q11.2 "TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa" 36139 rs16942219 TAF4B 6875 18 22108772 XM_290809 XP_290809 A/G I410V plus 23801124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q11.2 "TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa" 36140 rs16942219 TAF4B 6875 18 22108772 XM_290809 XP_290809 A/G I410V plus 23801124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q11.2 "TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa" 36141 rs16942445 CNGB1 1258 16 56492944 NM_001297 NP_001288 A/C A955S plus 23663612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q13 cyclic nucleotide gated channel beta 1 36142 rs16942445 CNGB1 1258 16 56492944 NM_001297 NP_001288 A/C A955S plus 23663612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 16q13 cyclic nucleotide gated channel beta 1 36143 rs16942445 CNGB1 1258 16 56492944 NM_001297 NP_001288 A/C A955S plus 23663612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q13 cyclic nucleotide gated channel beta 1 36144 rs16942615 CAMTA2 23125 17 4816352 NM_015099 NP_055914 A/G S903P plus 23623943 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 calmodulin binding transcription activator 2 36145 rs16942615 CAMTA2 23125 17 4816352 NM_015099 NP_055914 A/G S903P plus 23623943 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17p13.3 calmodulin binding transcription activator 2 36146 rs16942615 CAMTA2 23125 17 4816352 NM_015099 NP_055914 A/G S903P plus 23623943 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 calmodulin binding transcription activator 2 36147 rs16942697 OR4D1 26689 17 53552663 XM_292627 XP_292627 A/C K6T plus 23631190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 36148 rs16942697 OR4D1 26689 17 53552663 XM_292627 XP_292627 A/C K6T plus 23631190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 36149 rs16942697 OR4D1 26689 17 53552663 XM_292627 XP_292627 A/C K6T plus 23631190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q23.2 "olfactory receptor, family 4, subfamily D, member 1" 36150 rs16942745 SLC24A6 80024 12 112220886 NM_024959 NP_079235 A/G R222C plus 23952756 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12q24.21 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6" 36151 rs16942745 SLC24A6 80024 12 112220886 NM_024959 NP_079235 A/G R222C plus 23952756 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 12q24.21 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6" 36152 rs16942745 SLC24A6 80024 12 112220886 NM_024959 NP_079235 A/G R222C plus 23952756 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 by freq 12q24.21 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6" 36153 rs16943490 KNTC2 10403 18 2567761 NM_006101 NP_006092 G/T S66A plus 23465523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.31 kinetochore associated 2 36154 rs16943490 KNTC2 10403 18 2567761 NM_006101 NP_006092 G/T S66A plus 23465523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18p11.31 kinetochore associated 2 36155 rs16943490 KNTC2 10403 18 2567761 NM_006101 NP_006092 G/T S66A plus 23465523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.31 kinetochore associated 2 36156 rs16943596 ANPEP 290 15 88136792 NM_001150 NP_001141 C/T S752N plus 23530751 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 "by cluster,freq" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 36157 rs16943596 ANPEP 290 15 88136792 NM_001150 NP_001141 C/T S752N plus 23530751 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 "by cluster,freq" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 36158 rs16943596 ANPEP 290 15 88136792 NM_001150 NP_001141 C/T S752N plus 23530751 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 "by cluster,freq" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 36159 rs16943596 ANPEP 290 15 88136792 NM_001150 NP_001141 C/T S752N plus 24787449 1303 SEQUENOM CEPH CEPH (92) 184 0.34 123 "by cluster,freq" 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 36160 rs16943977 EMILIN2 84034 18 2880768 NM_032048 NP_114437 A/G A215T plus 23467604 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.3 elastin microfibril interfacer 2 36161 rs16943977 EMILIN2 84034 18 2880768 NM_032048 NP_114437 A/G A215T plus 23467604 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 18p11.3 elastin microfibril interfacer 2 36162 rs16943977 EMILIN2 84034 18 2880768 NM_032048 NP_114437 A/G A215T plus 23467604 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.3 elastin microfibril interfacer 2 36163 rs16943991 ABC1 63897 17 55476235 NM_022070 NP_071353 A/G S1006L plus 23598229 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 17q23.2-q23.3 amplified in breast cancer 1 36164 rs16943991 ABC1 63897 17 55476235 NM_022070 NP_071353 A/G S1006L plus 23598229 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 17q23.2-q23.3 amplified in breast cancer 1 36165 rs16943991 ABC1 63897 17 55476235 NM_022070 NP_071353 A/G S1006L plus 23598229 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 17q23.2-q23.3 amplified in breast cancer 1 36166 rs16944065 SEMA4B 10509 15 88572791 NM_020210 NP_064595 A/G S809N plus 23533155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36167 rs16944065 SEMA4B 10509 15 88572791 NM_020210 NP_064595 A/G S809N plus 23533155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36168 rs16944065 SEMA4B 10509 15 88572791 NM_020210 NP_064595 A/G S809N plus 23533155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36169 rs16944065 SEMA4B 10509 15 88572791 NM_198925 NP_945119 A/G S809N plus 23533155 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36170 rs16944065 SEMA4B 10509 15 88572791 NM_198925 NP_945119 A/G S809N plus 23533155 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36171 rs16944065 SEMA4B 10509 15 88572791 NM_198925 NP_945119 A/G S809N plus 23533155 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25 "sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B" 36172 rs16944148 USP32 84669 17 55613609 NM_032582 NP_115971 C/G A1469G minus 24814072 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 by freq 17q23.3 ubiquitin specific protease 32 36173 rs16944397 MYOM1 8736 18 3074007 NM_003803 NP_003794 A/G M1453T plus 23469192 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 36174 rs16944397 MYOM1 8736 18 3074007 NM_003803 NP_003794 A/G M1453T plus 23469192 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 36175 rs16944397 MYOM1 8736 18 3074007 NM_003803 NP_003794 A/G M1453T plus 23469192 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.32-p11.31 myomesin 1 (skelemin) 185kDa 36176 rs16944971 FURIN 5045 15 89220102 NM_002569 NP_002560 C/T A43V plus 23736634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 15q26.1 furin (paired basic amino acid cleaving enzyme) 36177 rs16944971 FURIN 5045 15 89220102 NM_002569 NP_002560 C/T A43V plus 23736634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 15q26.1 furin (paired basic amino acid cleaving enzyme) 36178 rs16944971 FURIN 5045 15 89220102 NM_002569 NP_002560 C/T A43V plus 23736634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 15q26.1 furin (paired basic amino acid cleaving enzyme) 36179 rs16945138 DNAH9 1770 17 11496973 NM_001372 NP_001363 C/T R842W plus 23602944 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36180 rs16945138 DNAH9 1770 17 11496973 NM_001372 NP_001363 C/T R842W plus 23602944 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36181 rs16945138 DNAH9 1770 17 11496973 NM_001372 NP_001363 C/T R842W plus 23602944 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36182 rs16945431 DNAH9 1770 17 11735883 NM_001372 NP_001363 A/G R3726Q plus 23604457 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36183 rs16945431 DNAH9 1770 17 11735883 NM_001372 NP_001363 A/G R3726Q plus 23604457 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36184 rs16945431 DNAH9 1770 17 11735883 NM_001372 NP_001363 A/G R3726Q plus 23604457 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36185 rs16945431 DNAH9 1770 17 11735883 NM_004662 NP_004653 A/G R38Q plus 23604457 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36186 rs16945431 DNAH9 1770 17 11735883 NM_004662 NP_004653 A/G R38Q plus 23604457 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36187 rs16945431 DNAH9 1770 17 11735883 NM_004662 NP_004653 A/G R38Q plus 23604457 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 36188 rs16945474 PHKB 5257 16 46255119 NM_000293 NP_000284 A/G Y770C plus 23509646 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12-q13 "phosphorylase kinase, beta" 36189 rs16945474 PHKB 5257 16 46255119 NM_000293 NP_000284 A/G Y770C plus 23509646 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 16q12-q13 "phosphorylase kinase, beta" 36190 rs16945474 PHKB 5257 16 46255119 NM_000293 NP_000284 A/G Y770C plus 23509646 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 16q12-q13 "phosphorylase kinase, beta" 36191 rs16945787 ABCC12 94160 16 46679401 NM_033226 NP_150229 G/T E1191A plus 23510750 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36192 rs16945787 ABCC12 94160 16 46679401 NM_033226 NP_150229 G/T E1191A plus 23510750 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36193 rs16945787 ABCC12 94160 16 46679401 NM_033226 NP_150229 G/T E1191A plus 23510750 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36194 rs16945816 ABCC12 94160 16 46708699 NM_033226 NP_150229 A/T N587Y plus 23510982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36195 rs16945816 ABCC12 94160 16 46708699 NM_033226 NP_150229 A/T N587Y plus 23510982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36196 rs16945816 ABCC12 94160 16 46708699 NM_033226 NP_150229 A/T N587Y plus 23510982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36197 rs16945816 ABCC12 94160 16 46708699 NM_145187 NP_660188 A/T N587Y plus 23510982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36198 rs16945816 ABCC12 94160 16 46708699 NM_145187 NP_660188 A/T N587Y plus 23510982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36199 rs16945816 ABCC12 94160 16 46708699 NM_145187 NP_660188 A/T N587Y plus 23510982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36200 rs16945816 ABCC12 94160 16 46708699 NM_145188 NP_660189 A/T N587Y plus 23510982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36201 rs16945816 ABCC12 94160 16 46708699 NM_145188 NP_660189 A/T N587Y plus 23510982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36202 rs16945816 ABCC12 94160 16 46708699 NM_145188 NP_660189 A/T N587Y plus 23510982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36203 rs16945816 ABCC12 94160 16 46708699 NM_145189 NP_660190 A/T N587Y plus 23510982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36204 rs16945816 ABCC12 94160 16 46708699 NM_145189 NP_660190 A/T N587Y plus 23510982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36205 rs16945816 ABCC12 94160 16 46708699 NM_145189 NP_660190 A/T N587Y plus 23510982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36206 rs16945816 ABCC12 94160 16 46708699 NM_145190 NP_660191 A/T N587Y plus 23510982 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36207 rs16945816 ABCC12 94160 16 46708699 NM_145190 NP_660191 A/T N587Y plus 23510982 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36208 rs16945816 ABCC12 94160 16 46708699 NM_145190 NP_660191 A/T N587Y plus 23510982 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36209 rs16945874 ABCC12 94160 16 46732736 NM_033226 NP_150229 G/T A102E plus 23511299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36210 rs16945874 ABCC12 94160 16 46732736 NM_033226 NP_150229 G/T A102E plus 23511299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36211 rs16945874 ABCC12 94160 16 46732736 NM_033226 NP_150229 G/T A102E plus 23511299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36212 rs16945874 ABCC12 94160 16 46732736 NM_145187 NP_660188 G/T A102E plus 23511299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36213 rs16945874 ABCC12 94160 16 46732736 NM_145187 NP_660188 G/T A102E plus 23511299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36214 rs16945874 ABCC12 94160 16 46732736 NM_145187 NP_660188 G/T A102E plus 23511299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36215 rs16945874 ABCC12 94160 16 46732736 NM_145188 NP_660189 G/T A102E plus 23511299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36216 rs16945874 ABCC12 94160 16 46732736 NM_145188 NP_660189 G/T A102E plus 23511299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36217 rs16945874 ABCC12 94160 16 46732736 NM_145188 NP_660189 G/T A102E plus 23511299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36218 rs16945874 ABCC12 94160 16 46732736 NM_145189 NP_660190 G/T A102E plus 23511299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36219 rs16945874 ABCC12 94160 16 46732736 NM_145189 NP_660190 G/T A102E plus 23511299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36220 rs16945874 ABCC12 94160 16 46732736 NM_145189 NP_660190 G/T A102E plus 23511299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36221 rs16945874 ABCC12 94160 16 46732736 NM_145190 NP_660191 G/T A102E plus 23511299 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36222 rs16945874 ABCC12 94160 16 46732736 NM_145190 NP_660191 G/T A102E plus 23511299 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36223 rs16945874 ABCC12 94160 16 46732736 NM_145190 NP_660191 G/T A102E plus 23511299 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" 36224 rs16945916 ABCC11 85320 16 46758933 NM_032583 NP_115972 C/T H1344R plus 23511672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36225 rs16945916 ABCC11 85320 16 46758933 NM_032583 NP_115972 C/T H1344R plus 23511672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36226 rs16945916 ABCC11 85320 16 46758933 NM_032583 NP_115972 C/T H1344R plus 23511672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36227 rs16945916 ABCC11 85320 16 46758933 NM_033151 NP_149163 C/T H1344R plus 23511672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36228 rs16945916 ABCC11 85320 16 46758933 NM_033151 NP_149163 C/T H1344R plus 23511672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36229 rs16945916 ABCC11 85320 16 46758933 NM_033151 NP_149163 C/T H1344R plus 23511672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36230 rs16945916 ABCC11 85320 16 46758933 NM_145186 NP_660187 C/T H1306R plus 23511672 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36231 rs16945916 ABCC11 85320 16 46758933 NM_145186 NP_660187 C/T H1306R plus 23511672 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36232 rs16945916 ABCC11 85320 16 46758933 NM_145186 NP_660187 C/T H1306R plus 23511672 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36233 rs16945930 ABCC11 85320 16 46791828 NM_032583 NP_115972 C/T V648I plus 24047861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36234 rs16945930 ABCC11 85320 16 46791828 NM_032583 NP_115972 C/T V648I plus 24047861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36235 rs16945930 ABCC11 85320 16 46791828 NM_032583 NP_115972 C/T V648I plus 24047861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36236 rs16945930 ABCC11 85320 16 46791828 NM_033151 NP_149163 C/T V648I plus 24047861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36237 rs16945930 ABCC11 85320 16 46791828 NM_033151 NP_149163 C/T V648I plus 24047861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36238 rs16945930 ABCC11 85320 16 46791828 NM_033151 NP_149163 C/T V648I plus 24047861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36239 rs16945930 ABCC11 85320 16 46791828 NM_145186 NP_660187 C/T V648I plus 24047861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36240 rs16945930 ABCC11 85320 16 46791828 NM_145186 NP_660187 C/T V648I plus 24047861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36241 rs16945930 ABCC11 85320 16 46791828 NM_145186 NP_660187 C/T V648I plus 24047861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36242 rs16945988 ABCC11 85320 16 46823278 NM_032583 NP_115972 C/T R19H plus 23512422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36243 rs16945988 ABCC11 85320 16 46823278 NM_032583 NP_115972 C/T R19H plus 23512422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36244 rs16945988 ABCC11 85320 16 46823278 NM_032583 NP_115972 C/T R19H plus 23512422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36245 rs16945988 ABCC11 85320 16 46823278 NM_033151 NP_149163 C/T R19H plus 23512422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36246 rs16945988 ABCC11 85320 16 46823278 NM_033151 NP_149163 C/T R19H plus 23512422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36247 rs16945988 ABCC11 85320 16 46823278 NM_033151 NP_149163 C/T R19H plus 23512422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36248 rs16945988 ABCC11 85320 16 46823278 NM_145186 NP_660187 C/T R19H plus 23512422 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36249 rs16945988 ABCC11 85320 16 46823278 NM_145186 NP_660187 C/T R19H plus 23512422 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36250 rs16945988 ABCC11 85320 16 46823278 NM_145186 NP_660187 C/T R19H plus 23512422 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 36251 rs16947226 GH2 2689 17 59311624 NM_022557 NP_072051 C/G F232L minus 24819321 1303 SEQUENOM CEPH CEPH (92) 184 0.1 123 by freq 17q24.2 growth hormone 2 36252 rs16947229 GH2 2689 17 59311697 NM_022557 NP_072051 A/G G208E minus 24819318 1303 SEQUENOM CEPH CEPH (92) 184 0.06 123 by freq 17q24.2 growth hormone 2 36253 rs16947353 HERC1 8925 15 61768906 NM_003922 NP_003913 C/T T1995A plus 23518480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36254 rs16947353 HERC1 8925 15 61768906 NM_003922 NP_003913 C/T T1995A plus 23518480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36255 rs16947353 HERC1 8925 15 61768906 NM_003922 NP_003913 C/T T1995A plus 23518480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36256 rs16947363 HERC1 8925 15 61778171 NM_003922 NP_003913 A/C S1572A plus 23518553 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36257 rs16947363 HERC1 8925 15 61778171 NM_003922 NP_003913 A/C S1572A plus 23518553 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36258 rs16947363 HERC1 8925 15 61778171 NM_003922 NP_003913 A/C S1572A plus 23518553 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q22 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 36259 rs16948568 MRPL10 124995 17 43259419 NM_145255 NP_660298 A/G V125I minus 24594137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36260 rs16948568 MRPL10 124995 17 43259419 NM_145255 NP_660298 A/G V125I minus 24594137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36261 rs16948568 MRPL10 124995 17 43259419 NM_145255 NP_660298 A/G V125I minus 24594137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36262 rs16948568 MRPL10 124995 17 43259419 NM_145255 NP_660298 A/G V125I minus 24792768 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36263 rs16948568 MRPL10 124995 17 43259419 NM_148887 NP_683685 A/G V135I minus 24594137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36264 rs16948568 MRPL10 124995 17 43259419 NM_148887 NP_683685 A/G V135I minus 24594137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36265 rs16948568 MRPL10 124995 17 43259419 NM_148887 NP_683685 A/G V135I minus 24594137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36266 rs16948568 MRPL10 124995 17 43259419 NM_148887 NP_683685 A/G V135I minus 24792768 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 by freq 17q21.32 mitochondrial ribosomal protein L10 36267 rs16948646 ITGA3 3675 17 45510424 NM_002204 NP_002195 A/G A719T plus 24123962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36268 rs16948646 ITGA3 3675 17 45510424 NM_002204 NP_002195 A/G A719T plus 24123962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36269 rs16948646 ITGA3 3675 17 45510424 NM_002204 NP_002195 A/G A719T plus 24123962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36270 rs16948646 ITGA3 3675 17 45510424 NM_005501 NP_005492 A/G A719T plus 24123962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36271 rs16948646 ITGA3 3675 17 45510424 NM_005501 NP_005492 A/G A719T plus 24123962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36272 rs16948646 ITGA3 3675 17 45510424 NM_005501 NP_005492 A/G A719T plus 24123962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 17q21.33 "integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" 36273 rs16948978 COX10 1352 17 13918404 NM_001303 NP_001294 C/T T28I plus 23618014 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36274 rs16948978 COX10 1352 17 13918404 NM_001303 NP_001294 C/T T28I plus 23618014 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36275 rs16948978 COX10 1352 17 13918404 NM_001303 NP_001294 C/T T28I plus 23618014 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36276 rs16948986 COX10 1352 17 13920889 NM_001303 NP_001294 A/G Y97C plus 23618044 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36277 rs16948986 COX10 1352 17 13920889 NM_001303 NP_001294 A/G Y97C plus 23618044 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36278 rs16948986 COX10 1352 17 13920889 NM_001303 NP_001294 A/G Y97C plus 23618044 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12-17p11.2 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" 36279 rs16950860 P2RX7 5027 12 120068074 NM_002562 NP_002553 C/T R270C plus 23445841 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 36280 rs16950860 P2RX7 5027 12 120068074 NM_002562 NP_002553 C/T R270C plus 23445841 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 36281 rs16950860 P2RX7 5027 12 120068074 NM_002562 NP_002553 C/T R270C plus 23445841 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 36282 rs16950981 LAMA1 284217 18 6982683 NM_005559 NP_005550 A/T D1682V plus 23586240 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.23 "laminin, alpha 1" 36283 rs16950981 LAMA1 284217 18 6982683 NM_005559 NP_005550 A/T D1682V plus 23586240 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 18p11.23 "laminin, alpha 1" 36284 rs16950981 LAMA1 284217 18 6982683 NM_005559 NP_005550 A/T D1682V plus 23586240 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.23 "laminin, alpha 1" 36285 rs16951079 LAMA1 284217 18 7027639 NM_005559 NP_005550 C/T V559I plus 23586981 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.23 "laminin, alpha 1" 36286 rs16951079 LAMA1 284217 18 7027639 NM_005559 NP_005550 C/T V559I plus 23586981 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 18p11.23 "laminin, alpha 1" 36287 rs16951079 LAMA1 284217 18 7027639 NM_005559 NP_005550 C/T V559I plus 23586981 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.23 "laminin, alpha 1" 36288 rs16951186 TNRC9 27324 16 51055373 XM_049037 XP_049037 C/T V300M plus 23465916 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q12.2 trinucleotide repeat containing 9 36289 rs16951186 TNRC9 27324 16 51055373 XM_049037 XP_049037 C/T V300M plus 23465916 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 16q12.2 trinucleotide repeat containing 9 36290 rs16951186 TNRC9 27324 16 51055373 XM_049037 XP_049037 C/T V300M plus 23465916 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.2 trinucleotide repeat containing 9 36291 rs16951438 MYO5B 4645 18 45835746 XM_371116 XP_371116 A/C C497G plus 23766688 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q21 myosin VB 36292 rs16951438 MYO5B 4645 18 45835746 XM_371116 XP_371116 A/C C497G plus 23766688 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 18q21 myosin VB 36293 rs16951438 MYO5B 4645 18 45835746 XM_371116 XP_371116 A/C C497G plus 23766688 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q21 myosin VB 36294 rs16951861 DPH2L1 1801 17 1886982 NM_001383 NP_001374 A/G K146R plus 24792269 1303 SEQUENOM CEPH CEPH (92) 184 0.25 123 by freq 17p13.3 DPH2-like 1 (S. cerevisiae) 36295 rs16951861 DPH2L1 1801 17 1886982 NM_001383 NP_001374 A/G K146R plus 24796517 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 by freq 17p13.3 DPH2-like 1 (S. cerevisiae) 36296 rs16952692 ME2 4200 18 46693267 NM_002396 NP_002387 C/T P114L plus 23768924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 18q21 "malic enzyme 2, NAD(+)-dependent, mitochondrial" 36297 rs16952692 ME2 4200 18 46693267 NM_002396 NP_002387 C/T P114L plus 23768924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 18q21 "malic enzyme 2, NAD(+)-dependent, mitochondrial" 36298 rs16952692 ME2 4200 18 46693267 NM_002396 NP_002387 C/T P114L plus 23768924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q21 "malic enzyme 2, NAD(+)-dependent, mitochondrial" 36299 rs16952828 OR3A1 4994 17 3142395 NM_002550 NP_002541 C/T S78G plus 23791875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 "olfactory receptor, family 3, subfamily A, member 1" 36300 rs16952828 OR3A1 4994 17 3142395 NM_002550 NP_002541 C/T S78G plus 23791875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17p13.3 "olfactory receptor, family 3, subfamily A, member 1" 36301 rs16952828 OR3A1 4994 17 3142395 NM_002550 NP_002541 C/T S78G plus 23791875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 "olfactory receptor, family 3, subfamily A, member 1" 36302 rs16953073 RC3 23312 15 49586680 NM_015263 NP_056078 C/T N903D plus 23740879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.3 rabconnectin-3 36303 rs16953073 RC3 23312 15 49586680 NM_015263 NP_056078 C/T N903D plus 23740879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q15.3 rabconnectin-3 36304 rs16953073 RC3 23312 15 49586680 NM_015263 NP_056078 C/T N903D plus 23740879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15.3 rabconnectin-3 36305 rs16953687 ZZEF1 23140 17 3926961 NM_015113 NP_055928 C/T I1021V plus 23792302 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 36306 rs16953687 ZZEF1 23140 17 3926961 NM_015113 NP_055928 C/T I1021V plus 23792302 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 36307 rs16953687 ZZEF1 23140 17 3926961 NM_015113 NP_055928 C/T I1021V plus 23792302 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 "zinc finger, ZZ-type with EF hand domain 1" 36308 rs16954775 PKD1L2 114780 16 79740969 NM_182740 NP_877417 A/G A1527V plus 23517871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 16q23.2 polycystic kidney disease 1-like 2 36309 rs16954775 PKD1L2 114780 16 79740969 NM_182740 NP_877417 A/G A1527V plus 23517871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 16q23.2 polycystic kidney disease 1-like 2 36310 rs16954775 PKD1L2 114780 16 79740969 NM_182740 NP_877417 A/G A1527V plus 23517871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q23.2 polycystic kidney disease 1-like 2 36311 rs16954781 MIS12 79003 17 5332967 NM_024039 NP_076944 A/G M21V plus 23793160 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 homolog of yeast Mis12 36312 rs16954781 MIS12 79003 17 5332967 NM_024039 NP_076944 A/G M21V plus 23793160 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 17p13.3 homolog of yeast Mis12 36313 rs16954781 MIS12 79003 17 5332967 NM_024039 NP_076944 A/G M21V plus 23793160 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 homolog of yeast Mis12 36314 rs16955011 ZNF183L1 140432 13 97627218 NM_178861 NP_849192 C/T V92M plus 23811284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 13q32.2 zinc finger protein 183-like 1 36315 rs16955011 ZNF183L1 140432 13 97627218 NM_178861 NP_849192 C/T V92M plus 23811284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 13q32.2 zinc finger protein 183-like 1 36316 rs16955011 ZNF183L1 140432 13 97627218 NM_178861 NP_849192 C/T V92M plus 23811284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 13q32.2 zinc finger protein 183-like 1 36317 rs16955280 MMP2 4313 16 54094283 NM_004530 NP_004521 C/G V621L plus 23407461 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q13-q21 "matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)" 36318 rs16955280 MMP2 4313 16 54094283 NM_004530 NP_004521 C/G V621L plus 23407461 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q13-q21 "matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)" 36319 rs16955280 MMP2 4313 16 54094283 NM_004530 NP_004521 C/G V621L plus 23407461 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q13-q21 "matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)" 36320 rs16955859 AIPL1 23746 17 6278141 NM_014336 NP_055151 A/G V33A plus 23785250 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 36321 rs16955859 AIPL1 23746 17 6278141 NM_014336 NP_055151 A/G V33A plus 23785250 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 36322 rs16955859 AIPL1 23746 17 6278141 NM_014336 NP_055151 A/G V33A plus 23785250 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.1 aryl hydrocarbon receptor interacting protein-like 1 36323 rs16956174 HSPC105 93517 16 80591113 NM_145168 NP_660151 C/T K96E plus 23523406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q23.2 NAD(P) dependent steroid dehydrogenase-like 36324 rs16956174 HSPC105 93517 16 80591113 NM_145168 NP_660151 C/T K96E plus 23523406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 16q23.2 NAD(P) dependent steroid dehydrogenase-like 36325 rs16956174 HSPC105 93517 16 80591113 NM_145168 NP_660151 C/T K96E plus 23523406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q23.2 NAD(P) dependent steroid dehydrogenase-like 36326 rs16956264 FBXO39 162517 17 6624408 NM_153230 NP_694962 A/G Y166C plus 23785542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 17p13.2 F-box protein 39 36327 rs16956264 FBXO39 162517 17 6624408 NM_153230 NP_694962 A/G Y166C plus 23785542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 17p13.2 F-box protein 39 36328 rs16956264 FBXO39 162517 17 6624408 NM_153230 NP_694962 A/G Y166C plus 23785542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.2 F-box protein 39 36329 rs16956367 MYO9A 4649 15 69963004 NM_006901 NP_008832 A/G H1795Y plus 23509775 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q22-q23 myosin IXA 36330 rs16956367 MYO9A 4649 15 69963004 NM_006901 NP_008832 A/G H1795Y plus 23509775 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 15q22-q23 myosin IXA 36331 rs16956367 MYO9A 4649 15 69963004 NM_006901 NP_008832 A/G H1795Y plus 23509775 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q22-q23 myosin IXA 36332 rs16956478 CLECSF14 10462 17 6920997 NM_006344 NP_006335 C/T R73K plus 23785835 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36333 rs16956478 CLECSF14 10462 17 6920997 NM_006344 NP_006335 C/T R73K plus 23785835 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36334 rs16956478 CLECSF14 10462 17 6920997 NM_006344 NP_006335 C/T R73K plus 23785835 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36335 rs16956478 CLECSF14 10462 17 6920997 NM_182906 NP_878910 C/T R73K plus 23785835 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36336 rs16956478 CLECSF14 10462 17 6920997 NM_182906 NP_878910 C/T R73K plus 23785835 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36337 rs16956478 CLECSF14 10462 17 6920997 NM_182906 NP_878910 C/T R73K plus 23785835 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)" 36338 rs16956504 CDH5 1003 16 64989882 NM_001795 NP_001786 C/T I503T plus 23757634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16q22.1 "cadherin 5, type 2, VE-cadherin (vascular epithelium)" 36339 rs16956504 CDH5 1003 16 64989882 NM_001795 NP_001786 C/T I503T plus 23757634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q22.1 "cadherin 5, type 2, VE-cadherin (vascular epithelium)" 36340 rs16956504 CDH5 1003 16 64989882 NM_001795 NP_001786 C/T I503T plus 23757634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 16q22.1 "cadherin 5, type 2, VE-cadherin (vascular epithelium)" 36341 rs16956808 MPDU1 9526 17 7431522 NM_004870 NP_004861 A/G G225S plus 23625879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 36342 rs16956808 MPDU1 9526 17 7431522 NM_004870 NP_004861 A/G G225S plus 23625879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.2 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 36343 rs16956808 MPDU1 9526 17 7431522 NM_004870 NP_004861 A/G G225S plus 23625879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 17p13.1-p12 mannose-P-dolichol utilization defect 1 36344 rs16957055 STARD9 57519 15 40767682 XM_031744 XP_031744 C/T A2209V plus 23368364 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 15q14 START domain containing 9 36345 rs16957055 STARD9 57519 15 40767682 XM_031744 XP_031744 C/T A2209V plus 23368364 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 15q14 START domain containing 9 36346 rs16957055 STARD9 57519 15 40767682 XM_031744 XP_031744 C/T A2209V plus 23368364 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 15q14 START domain containing 9 36347 rs16957061 STARD9 57519 15 40771474 XM_031744 XP_031744 A/G Y3473C plus 23368410 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 15q14 START domain containing 9 36348 rs16957061 STARD9 57519 15 40771474 XM_031744 XP_031744 A/G Y3473C plus 23368410 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 15q14 START domain containing 9 36349 rs16957061 STARD9 57519 15 40771474 XM_031744 XP_031744 A/G Y3473C plus 23368410 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 15q14 START domain containing 9 36350 rs16957356 PCCA 5095 13 99818828 NM_000282 NP_000273 C/T S557L plus 23730065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q32 "propionyl Coenzyme A carboxylase, alpha polypeptide" 36351 rs16957356 PCCA 5095 13 99818828 NM_000282 NP_000273 C/T S557L plus 23730065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 13q32 "propionyl Coenzyme A carboxylase, alpha polypeptide" 36352 rs16957356 PCCA 5095 13 99818828 NM_000282 NP_000273 C/T S557L plus 23730065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q32 "propionyl Coenzyme A carboxylase, alpha polypeptide" 36353 rs16957552 BCAR1 9564 16 73826625 NM_014567 NP_055382 C/T H558R plus 23755651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36354 rs16957552 BCAR1 9564 16 73826625 NM_014567 NP_055382 C/T H558R plus 23755651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36355 rs16957552 BCAR1 9564 16 73826625 NM_014567 NP_055382 C/T H558R plus 23755651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36356 rs16957558 BCAR1 9564 16 73826826 NM_014567 NP_055382 A/C R491L plus 23755656 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36357 rs16957558 BCAR1 9564 16 73826826 NM_014567 NP_055382 A/C R491L plus 23755656 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36358 rs16957558 BCAR1 9564 16 73826826 NM_014567 NP_055382 A/C R491L plus 23755656 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q22-q23 breast cancer anti-estrogen resistance 1 36359 rs16957670 DPEP3 64180 16 66569368 NM_022357 NP_071752 C/T V269I plus 23759079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 16q22.1 dipeptidase 3 36360 rs16957670 DPEP3 64180 16 66569368 NM_022357 NP_071752 C/T V269I plus 23759079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 16q22.1 dipeptidase 3 36361 rs16957670 DPEP3 64180 16 66569368 NM_022357 NP_071752 C/T V269I plus 23759079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q22.1 dipeptidase 3 36362 rs16958654 ZC3HDC7 29066 16 11780659 NM_014153 NP_054872 C/T H57R plus 23528405 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 16p13-p12 zinc finger CCCH type domain containing 7 36363 rs16958654 ZC3HDC7 29066 16 11780659 NM_014153 NP_054872 C/T H57R plus 23528405 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 16p13-p12 zinc finger CCCH type domain containing 7 36364 rs16958654 ZC3HDC7 29066 16 11780659 NM_014153 NP_054872 C/T H57R plus 23528405 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p13-p12 zinc finger CCCH type domain containing 7 36365 rs16958679 GPR56 9289 16 56252187 NM_005682 NP_005673 C/T P527L plus 23421962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36366 rs16958679 GPR56 9289 16 56252187 NM_005682 NP_005673 C/T P527L plus 23421962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 16q13 G protein-coupled receptor 56 36367 rs16958679 GPR56 9289 16 56252187 NM_005682 NP_005673 C/T P527L plus 23421962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36368 rs16958679 GPR56 9289 16 56252187 NM_201524 NP_958932 C/T P521L plus 23421962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36369 rs16958679 GPR56 9289 16 56252187 NM_201524 NP_958932 C/T P521L plus 23421962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 16q13 G protein-coupled receptor 56 36370 rs16958679 GPR56 9289 16 56252187 NM_201524 NP_958932 C/T P521L plus 23421962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36371 rs16958679 GPR56 9289 16 56252187 NM_201525 NP_958933 C/T P521L plus 23421962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36372 rs16958679 GPR56 9289 16 56252187 NM_201525 NP_958933 C/T P521L plus 23421962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 16q13 G protein-coupled receptor 56 36373 rs16958679 GPR56 9289 16 56252187 NM_201525 NP_958933 C/T P521L plus 23421962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 16q13 G protein-coupled receptor 56 36374 rs16958918 GLP2R 9340 17 9733653 NM_004246 NP_004237 A/G R523H plus 23632622 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p13.3 glucagon-like peptide 2 receptor 36375 rs16958918 GLP2R 9340 17 9733653 NM_004246 NP_004237 A/G R523H plus 23632622 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 17p13.3 glucagon-like peptide 2 receptor 36376 rs16958918 GLP2R 9340 17 9733653 NM_004246 NP_004237 A/G R523H plus 23632622 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 glucagon-like peptide 2 receptor 36377 rs16960959 MYO15A 51168 17 17994947 NM_016239 NP_057323 A/G A2490T plus 23640818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17p11.2 myosin XVA 36378 rs16960959 MYO15A 51168 17 17994947 NM_016239 NP_057323 A/G A2490T plus 23640818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 17p11.2 myosin XVA 36379 rs16960959 MYO15A 51168 17 17994947 NM_016239 NP_057323 A/G A2490T plus 23640818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p11.2 myosin XVA 36380 rs16961689 DSG1 1828 18 27173882 NM_001942 NP_001933 A/C Y528S plus 23766617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 18q12.1 desmoglein 1 36381 rs16961689 DSG1 1828 18 27173882 NM_001942 NP_001933 A/C Y528S plus 23766617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 18q12.1 desmoglein 1 36382 rs16961689 DSG1 1828 18 27173882 NM_001942 NP_001933 A/C Y528S plus 23766617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 18q12.1 desmoglein 1 36383 rs16961692 DSG1 1828 18 27188619 NM_001942 NP_001933 A/T L821Q plus 23766659 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q12.1 desmoglein 1 36384 rs16961692 DSG1 1828 18 27188619 NM_001942 NP_001933 A/T L821Q plus 23766659 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 18q12.1 desmoglein 1 36385 rs16961692 DSG1 1828 18 27188619 NM_001942 NP_001933 A/T L821Q plus 23766659 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q12.1 desmoglein 1 36386 rs16961728 RaLP 399694 15 46935484 NM_203349 NP_976224 G/T Q400H plus 24001284 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q21.1-q21.2 rai-like protein 36387 rs16961728 RaLP 399694 15 46935484 NM_203349 NP_976224 G/T Q400H plus 24001284 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q21.1-q21.2 rai-like protein 36388 rs16961728 RaLP 399694 15 46935484 NM_203349 NP_976224 G/T Q400H plus 24001284 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 15q21.1-q21.2 rai-like protein 36389 rs16961975 DSG3 1830 18 27300604 NM_001944 NP_001935 A/G V509M plus 23767067 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 36390 rs16961975 DSG3 1830 18 27300604 NM_001944 NP_001935 A/G V509M plus 23767067 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 36391 rs16961975 DSG3 1830 18 27300604 NM_001944 NP_001935 A/G V509M plus 23767067 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q12.1-q12.2 desmoglein 3 (pemphigus vulgaris antigen) 36392 rs16962987 ATP8B4 79895 15 47939693 XM_370863 XP_370863 A/C V1063G plus 23440651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36393 rs16962987 ATP8B4 79895 15 47939693 XM_370863 XP_370863 A/C V1063G plus 23440651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36394 rs16962987 ATP8B4 79895 15 47939693 XM_370863 XP_370863 A/C V1063G plus 23440651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36395 rs16962989 ATP8B4 79895 15 47939767 XM_370863 XP_370863 A/T N1038K plus 23440662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36396 rs16962989 ATP8B4 79895 15 47939767 XM_370863 XP_370863 A/T N1038K plus 23440662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36397 rs16962989 ATP8B4 79895 15 47939767 XM_370863 XP_370863 A/T N1038K plus 23440662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36398 rs16963151 ATP8B4 79895 15 48066954 XM_370863 XP_370863 C/T N98S plus 23441605 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36399 rs16963151 ATP8B4 79895 15 48066954 XM_370863 XP_370863 C/T N98S plus 23441605 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36400 rs16963151 ATP8B4 79895 15 48066954 XM_370863 XP_370863 C/T N98S plus 23441605 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.33 123 by freq 15q15.3 "ATPase, Class I, type 8B, member 4" 36401 rs16963486 HDC 3067 15 48322081 NM_002112 NP_002103 A/G F553L plus 23373153 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q21-q22 histidine decarboxylase 36402 rs16963486 HDC 3067 15 48322081 NM_002112 NP_002103 A/G F553L plus 23373153 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q21-q22 histidine decarboxylase 36403 rs16963486 HDC 3067 15 48322081 NM_002112 NP_002103 A/G F553L plus 23373153 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q21-q22 histidine decarboxylase 36404 rs16964363 SLC13A2 9058 17 23840389 NM_003984 NP_003975 A/C M45L plus 24126012 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 17p13.2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" 36405 rs16964363 SLC13A2 9058 17 23840389 NM_003984 NP_003975 A/C M45L plus 24126012 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 17p13.2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" 36406 rs16964363 SLC13A2 9058 17 23840389 NM_003984 NP_003975 A/C M45L plus 24126012 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 17p13.2 "solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2" 36407 rs16964944 MYO5A 4644 15 50463684 NM_000259 NP_000250 A/G M627T plus 23742614 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 36408 rs16964944 MYO5A 4644 15 50463684 NM_000259 NP_000250 A/G M627T plus 23742614 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 36409 rs16964944 MYO5A 4644 15 50463684 NM_000259 NP_000250 A/G M627T plus 23742614 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q21 "myosin VA (heavy polypeptide 12, myoxin)" 36410 rs16965150 NOD27 84166 16 55616985 NM_032206 NP_115582 C/T S210L plus 23418818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 16q13 nucleotide-binding oligomerization domains 27 36411 rs16965150 NOD27 84166 16 55616985 NM_032206 NP_115582 C/T S210L plus 23418818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 16q13 nucleotide-binding oligomerization domains 27 36412 rs16965150 NOD27 84166 16 55616985 NM_032206 NP_115582 C/T S210L plus 23418818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q13 nucleotide-binding oligomerization domains 27 36413 rs16965388 GSDML 55876 17 35315665 NM_018530 NP_061000 A/G R308C plus 23617725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 17q21.2 gasdermin-like 36414 rs16965388 GSDML 55876 17 35315665 NM_018530 NP_061000 A/G R308C plus 23617725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 17q21.2 gasdermin-like 36415 rs16965388 GSDML 55876 17 35315665 NM_018530 NP_061000 A/G R308C plus 23617725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 17q21.2 gasdermin-like 36416 rs16966138 KRT24 192666 17 36109823 NM_019016 NP_061889 A/G R366C plus 23625815 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q11.2 keratin 24 36417 rs16966138 KRT24 192666 17 36109823 NM_019016 NP_061889 A/G R366C plus 23625815 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17q11.2 keratin 24 36418 rs16966138 KRT24 192666 17 36109823 NM_019016 NP_061889 A/G R366C plus 23625815 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q11.2 keratin 24 36419 rs16966811 KRTHA7 8688 17 36832638 NM_003770 NP_003761 A/G A217V plus 24118193 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 36420 rs16966811 KRTHA7 8688 17 36832638 NM_003770 NP_003761 A/G A217V plus 24118193 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 36421 rs16966811 KRTHA7 8688 17 36832638 NM_003770 NP_003761 A/G A217V plus 24118193 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 36422 rs16966957 NTAN1 123803 16 15039475 NM_173474 NP_775745 G/T H283N plus 24097373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 "by cluster,freq" 16p13.13 N-terminal asparagine amidase 36423 rs16966957 NTAN1 123803 16 15039475 NM_173474 NP_775745 G/T H283N plus 24097373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 "by cluster,freq" 16p13.13 N-terminal asparagine amidase 36424 rs16966957 NTAN1 123803 16 15039475 NM_173474 NP_775745 G/T H283N plus 24097373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 "by cluster,freq" 16p13.13 N-terminal asparagine amidase 36425 rs16967042 HCA66 55813 17 27250851 NM_018428 NP_060898 C/T K35R plus 23794875 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 17q11.2 hepatocellular carcinoma-associated antigen 66 36426 rs16967042 HCA66 55813 17 27250851 NM_018428 NP_060898 C/T K35R plus 23794875 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17q11.2 hepatocellular carcinoma-associated antigen 66 36427 rs16967042 HCA66 55813 17 27250851 NM_018428 NP_060898 C/T K35R plus 23794875 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 17q11.2 hepatocellular carcinoma-associated antigen 66 36428 rs16967474 STATIP1 55250 18 31980293 NM_018255 NP_060725 A/G H359R plus 23751371 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 36429 rs16967474 STATIP1 55250 18 31980293 NM_018255 NP_060725 A/G H359R plus 23751371 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 36430 rs16967474 STATIP1 55250 18 31980293 NM_018255 NP_060725 A/G H359R plus 23751371 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18q12.2 signal transducer and activator of transcription 3 interacting protein 1 36431 rs16967494 MYH11 4629 16 15728364 NM_002474 NP_002465 C/T A1234T plus 24064271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36432 rs16967494 MYH11 4629 16 15728364 NM_002474 NP_002465 C/T A1234T plus 24064271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36433 rs16967494 MYH11 4629 16 15728364 NM_002474 NP_002465 C/T A1234T plus 24064271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36434 rs16967494 MYH11 4629 16 15728364 NM_022844 NP_074035 C/T A1234T plus 24064271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36435 rs16967494 MYH11 4629 16 15728364 NM_022844 NP_074035 C/T A1234T plus 24064271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36436 rs16967494 MYH11 4629 16 15728364 NM_022844 NP_074035 C/T A1234T plus 24064271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 16p13.13-p13.12 "myosin, heavy polypeptide 11, smooth muscle" 36437 rs16967824 GPATC1 55094 19 38309439 NM_018025 NP_060495 A/G E909K plus 23775831 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.12 G patch domain containing 1 36438 rs16967824 GPATC1 55094 19 38309439 NM_018025 NP_060495 A/G E909K plus 23775831 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19q13.12 G patch domain containing 1 36439 rs16967824 GPATC1 55094 19 38309439 NM_018025 NP_060495 A/G E909K plus 23775831 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.12 G patch domain containing 1 36440 rs16967845 SPACA3 124912 17 28346744 NM_173847 NP_776246 A/G C80Y plus 23645285 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 17q12 sperm acrosome associated 3 36441 rs16967845 SPACA3 124912 17 28346744 NM_173847 NP_776246 A/G C80Y plus 23645285 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q12 sperm acrosome associated 3 36442 rs16967845 SPACA3 124912 17 28346744 NM_173847 NP_776246 A/G C80Y plus 23645285 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q12 sperm acrosome associated 3 36443 rs16968733 SEMA7A 8482 15 72497691 NM_003612 NP_003603 A/T S115T plus 23423588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q22.3-q23 "sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A" 36444 rs16968733 SEMA7A 8482 15 72497691 NM_003612 NP_003603 A/T S115T plus 23423588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q22.3-q23 "sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A" 36445 rs16968733 SEMA7A 8482 15 72497691 NM_003612 NP_003603 A/T S115T plus 23423588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q22.3-q23 "sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A" 36446 rs16969968 CHRNA5 1138 15 76669980 NM_000745 NP_000736 A/G D398N plus 24450269 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 15q24 "cholinergic receptor, nicotinic, alpha polypeptide 5" 36447 rs16969968 CHRNA5 1138 15 76669980 NM_000745 NP_000736 A/G D398N plus 24450269 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q24 "cholinergic receptor, nicotinic, alpha polypeptide 5" 36448 rs16969968 CHRNA5 1138 15 76669980 NM_000745 NP_000736 A/G D398N plus 24450269 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q24 "cholinergic receptor, nicotinic, alpha polypeptide 5" 36449 rs16970659 CMYA4 146862 17 30500114 NM_173167 NP_775259 A/G V60I plus 24104558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.1 cardiomyopathy associated 4 36450 rs16970659 CMYA4 146862 17 30500114 NM_173167 NP_775259 A/G V60I plus 24104558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q21.1 cardiomyopathy associated 4 36451 rs16970659 CMYA4 146862 17 30500114 NM_173167 NP_775259 A/G V60I plus 24104558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 17q21.1 cardiomyopathy associated 4 36452 rs16970832 DNAH3 55567 16 20956787 NM_017539 NP_060009 C/T V1583I plus 23364948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36453 rs16970832 DNAH3 55567 16 20956787 NM_017539 NP_060009 C/T V1583I plus 23364948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36454 rs16970832 DNAH3 55567 16 20956787 NM_017539 NP_060009 C/T V1583I plus 23364948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36455 rs16970874 AF15Q14 57082 15 38689745 NM_020380 NP_065113 A/G T70A plus 23493994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 15q14 AF15q14 protein 36456 rs16970874 AF15Q14 57082 15 38689745 NM_020380 NP_065113 A/G T70A plus 23493994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 15q14 AF15q14 protein 36457 rs16970874 AF15Q14 57082 15 38689745 NM_020380 NP_065113 A/G T70A plus 23493994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36458 rs16970874 AF15Q14 57082 15 38689745 NM_144508 NP_653091 A/G T70A plus 23493994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 15q14 AF15q14 protein 36459 rs16970874 AF15Q14 57082 15 38689745 NM_144508 NP_653091 A/G T70A plus 23493994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 15q14 AF15q14 protein 36460 rs16970874 AF15Q14 57082 15 38689745 NM_144508 NP_653091 A/G T70A plus 23493994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36461 rs16970874 AF15Q14 57082 15 38689745 NM_170589 NP_733468 A/G T70A plus 23493994 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 15q14 AF15q14 protein 36462 rs16970874 AF15Q14 57082 15 38689745 NM_170589 NP_733468 A/G T70A plus 23493994 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 15q14 AF15q14 protein 36463 rs16970874 AF15Q14 57082 15 38689745 NM_170589 NP_733468 A/G T70A plus 23493994 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36464 rs16970910 DNAH3 55567 16 21039628 NM_017539 NP_060009 A/G R545W plus 23365529 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36465 rs16970910 DNAH3 55567 16 21039628 NM_017539 NP_060009 A/G R545W plus 23365529 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36466 rs16970910 DNAH3 55567 16 21039628 NM_017539 NP_060009 A/G R545W plus 23365529 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p13.11-p12.3 "dynein, axonemal, heavy polypeptide 3" 36467 rs16970911 AF15Q14 57082 15 38704093 NM_020380 NP_065113 A/G T1447A plus 23494195 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36468 rs16970911 AF15Q14 57082 15 38704093 NM_020380 NP_065113 A/G T1447A plus 23494195 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 15q14 AF15q14 protein 36469 rs16970911 AF15Q14 57082 15 38704093 NM_020380 NP_065113 A/G T1447A plus 23494195 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 AF15q14 protein 36470 rs16970911 AF15Q14 57082 15 38704093 NM_144508 NP_653091 A/G T1447A plus 23494195 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36471 rs16970911 AF15Q14 57082 15 38704093 NM_144508 NP_653091 A/G T1447A plus 23494195 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 15q14 AF15q14 protein 36472 rs16970911 AF15Q14 57082 15 38704093 NM_144508 NP_653091 A/G T1447A plus 23494195 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 AF15q14 protein 36473 rs16970911 AF15Q14 57082 15 38704093 NM_170589 NP_733468 A/G T1473A plus 23494195 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 15q14 AF15q14 protein 36474 rs16970911 AF15Q14 57082 15 38704093 NM_170589 NP_733468 A/G T1473A plus 23494195 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 15q14 AF15q14 protein 36475 rs16970911 AF15Q14 57082 15 38704093 NM_170589 NP_733468 A/G T1473A plus 23494195 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 AF15q14 protein 36476 rs16971436 ATBF1 463 16 71550264 NM_006885 NP_008816 G/T T428P plus 23619531 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 16q22.3-q23.1 AT-binding transcription factor 1 36477 rs16971436 ATBF1 463 16 71550264 NM_006885 NP_008816 G/T T428P plus 23619531 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 16q22.3-q23.1 AT-binding transcription factor 1 36478 rs16971436 ATBF1 463 16 71550264 NM_006885 NP_008816 G/T T428P plus 23619531 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 by freq 16q22.3-q23.1 AT-binding transcription factor 1 36479 rs16971625 BCL2A1 597 15 78050461 NM_004049 NP_004040 C/T C19Y plus 24064952 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 15q24.3 BCL2-related protein A1 36480 rs16971625 BCL2A1 597 15 78050461 NM_004049 NP_004040 C/T C19Y plus 24064952 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 15q24.3 BCL2-related protein A1 36481 rs16971625 BCL2A1 597 15 78050461 NM_004049 NP_004040 C/T C19Y plus 24064952 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 by freq 15q24.3 BCL2-related protein A1 36482 rs16971802 CCL14-CCL15 348249 17 31335500 NM_004166 NP_004157 C/T K61E plus 23617969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36483 rs16971802 CCL14-CCL15 348249 17 31335500 NM_004166 NP_004157 C/T K61E plus 23617969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36484 rs16971802 CCL14-CCL15 348249 17 31335500 NM_004166 NP_004157 C/T K61E plus 23617969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36485 rs16971802 CCL14-CCL15 348249 17 31335500 NM_032962 NP_116738 C/T K77E plus 23617969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36486 rs16971802 CCL14-CCL15 348249 17 31335500 NM_032962 NP_116738 C/T K77E plus 23617969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36487 rs16971802 CCL14-CCL15 348249 17 31335500 NM_032962 NP_116738 C/T K77E plus 23617969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.1 "chemokine ligand 14, chemokine ligand 15 transcription unit" 36488 rs16971802 CCL14 6358 17 31335500 NM_032963 NP_116739 C/T K61E plus 23617969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17q11.2 chemokine (C-C motif) ligand 14 36489 rs16971802 CCL14 6358 17 31335500 NM_032963 NP_116739 C/T K61E plus 23617969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 17q11.2 chemokine (C-C motif) ligand 14 36490 rs16971802 CCL14 6358 17 31335500 NM_032963 NP_116739 C/T K61E plus 23617969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q11.2 chemokine (C-C motif) ligand 14 36491 rs16972169 OMG 4974 17 26646172 NM_002544 NP_002535 A/G V435A plus 23794327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q11.2 oligodendrocyte myelin glycoprotein 36492 rs16972169 OMG 4974 17 26646172 NM_002544 NP_002535 A/G V435A plus 23794327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17q11.2 oligodendrocyte myelin glycoprotein 36493 rs16972169 OMG 4974 17 26646172 NM_002544 NP_002535 A/G V435A plus 23794327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q11.2 oligodendrocyte myelin glycoprotein 36494 rs16972193 SPTBN5 51332 15 39942030 NM_016642 NP_057726 A/G R2462W plus 23957463 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.17 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 36495 rs16972193 SPTBN5 51332 15 39942030 NM_016642 NP_057726 A/G R2462W plus 23957463 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 36496 rs16972193 SPTBN5 51332 15 39942030 NM_016642 NP_057726 A/G R2462W plus 23957463 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.45 123 by freq 15q21 "spectrin, beta, non-erythrocytic 5" 36497 rs16973015 GANC 2595 15 40372391 NM_198141 NP_937784 A/G I166V plus 23365725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.2 "glucosidase, alpha; neutral C" 36498 rs16973015 GANC 2595 15 40372391 NM_198141 NP_937784 A/G I166V plus 23365725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 15q15.2 "glucosidase, alpha; neutral C" 36499 rs16973015 GANC 2595 15 40372391 NM_198141 NP_937784 A/G I166V plus 23365725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15.2 "glucosidase, alpha; neutral C" 36500 rs16973313 MYR8 23026 13 108294814 XM_028522 XP_028522 C/T M683T plus 23580658 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 13q33.3 myosin heavy chain Myr 8 36501 rs16973313 MYR8 23026 13 108294814 XM_028522 XP_028522 C/T M683T plus 23580658 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 13q33.3 myosin heavy chain Myr 8 36502 rs16973313 MYR8 23026 13 108294814 XM_028522 XP_028522 C/T M683T plus 23580658 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 13q33.3 myosin heavy chain Myr 8 36503 rs16973407 CLG 64857 19 44605398 NM_022835 NP_073746 A/G I580V plus 23812893 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 36504 rs16973407 CLG 64857 19 44605398 NM_022835 NP_073746 A/G I580V plus 23812893 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 36505 rs16973407 CLG 64857 19 44605398 NM_022835 NP_073746 A/G I580V plus 23812893 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2 likely ortholog of mouse common-site lymphoma/leukemia GEF 36506 rs16973424 ABCA8 10351 17 64415596 NM_007168 NP_009099 A/C C680G plus 24120412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36507 rs16973424 ABCA8 10351 17 64415596 NM_007168 NP_009099 A/C C680G plus 24120412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36508 rs16973424 ABCA8 10351 17 64415596 NM_007168 NP_009099 A/C C680G plus 24120412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36509 rs16973446 ABCA8 10351 17 64440055 NM_007168 NP_009099 C/T T256A plus 23633157 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36510 rs16973446 ABCA8 10351 17 64440055 NM_007168 NP_009099 C/T T256A plus 23633157 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.25 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36511 rs16973446 ABCA8 10351 17 64440055 NM_007168 NP_009099 C/T T256A plus 23633157 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 17q24 "ATP-binding cassette, sub-family A (ABC1), member 8" 36512 rs16973716 PMFBP1 83449 16 70714343 NM_031293 NP_112583 G/T K913N plus 23615527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 16q22.2 polyamine modulated factor 1 binding protein 1 36513 rs16973716 PMFBP1 83449 16 70714343 NM_031293 NP_112583 G/T K913N plus 23615527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 16q22.2 polyamine modulated factor 1 binding protein 1 36514 rs16973716 PMFBP1 83449 16 70714343 NM_031293 NP_112583 G/T K913N plus 23615527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 16q22.2 polyamine modulated factor 1 binding protein 1 36515 rs16973840 RBBP6 5930 16 24486039 NM_006910 NP_008841 C/T V555A plus 23381163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.05 123 by freq 16p12.2 retinoblastoma binding protein 6 36516 rs16973840 RBBP6 5930 16 24486039 NM_006910 NP_008841 C/T V555A plus 23381163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 16p12.2 retinoblastoma binding protein 6 36517 rs16973840 RBBP6 5930 16 24486039 NM_006910 NP_008841 C/T V555A plus 23381163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.11 123 by freq 16p12.2 retinoblastoma binding protein 6 36518 rs16973840 RBBP6 5930 16 24486039 NM_018703 NP_061173 C/T V555A plus 23381163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.05 123 by freq 16p12.2 retinoblastoma binding protein 6 36519 rs16973840 RBBP6 5930 16 24486039 NM_018703 NP_061173 C/T V555A plus 23381163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 16p12.2 retinoblastoma binding protein 6 36520 rs16973840 RBBP6 5930 16 24486039 NM_018703 NP_061173 C/T V555A plus 23381163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.11 123 by freq 16p12.2 retinoblastoma binding protein 6 36521 rs16973890 ZNF571 51276 19 42747393 NM_016536 NP_057620 C/T K593E plus 23408107 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.13 zinc finger protein 571 36522 rs16973890 ZNF571 51276 19 42747393 NM_016536 NP_057620 C/T K593E plus 23408107 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 19q13.13 zinc finger protein 571 36523 rs16973890 ZNF571 51276 19 42747393 NM_016536 NP_057620 C/T K593E plus 23408107 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19q13.13 zinc finger protein 571 36524 rs16974462 SCAND2 54581 15 82976462 NM_022050 NP_071333 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36525 rs16974462 SCAND2 54581 15 82976462 NM_022050 NP_071333 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36526 rs16974462 SCAND2 54581 15 82976462 NM_022050 NP_071333 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36527 rs16974462 SCAND2 54581 15 82976462 NM_033633 NP_378659 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36528 rs16974462 SCAND2 54581 15 82976462 NM_033633 NP_378659 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36529 rs16974462 SCAND2 54581 15 82976462 NM_033633 NP_378659 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36530 rs16974462 SCAND2 54581 15 82976462 NM_033634 NP_378660 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36531 rs16974462 SCAND2 54581 15 82976462 NM_033634 NP_378660 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36532 rs16974462 SCAND2 54581 15 82976462 NM_033634 NP_378660 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36533 rs16974462 SCAND2 54581 15 82976462 NM_033635 NP_378661 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36534 rs16974462 SCAND2 54581 15 82976462 NM_033635 NP_378661 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36535 rs16974462 SCAND2 54581 15 82976462 NM_033635 NP_378661 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36536 rs16974462 SCAND2 54581 15 82976462 NM_033636 NP_378662 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36537 rs16974462 SCAND2 54581 15 82976462 NM_033636 NP_378662 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36538 rs16974462 SCAND2 54581 15 82976462 NM_033636 NP_378662 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36539 rs16974462 SCAND2 54581 15 82976462 NM_033640 NP_378666 A/C P110T plus 23331205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36540 rs16974462 SCAND2 54581 15 82976462 NM_033640 NP_378666 A/C P110T plus 23331205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25-q26 SCAN domain containing 2 36541 rs16974462 SCAND2 54581 15 82976462 NM_033640 NP_378666 A/C P110T plus 23331205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 SCAN domain containing 2 36542 rs16974569 MIDORI 57538 15 83200649 NM_020778 NP_065829 C/T T761M plus 23940334 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 36543 rs16974569 MIDORI 57538 15 83200649 NM_020778 NP_065829 C/T T761M plus 23940334 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 36544 rs16974569 MIDORI 57538 15 83200649 NM_020778 NP_065829 C/T T761M plus 23940334 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 15q25.2 likely ortholog of mouse myocytic induction/differentiation originator 36545 rs16974765 NAPG 8774 18 10529774 NM_003826 NP_003817 C/T P92S plus 23450939 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 36546 rs16974765 NAPG 8774 18 10529774 NM_003826 NP_003817 C/T P92S plus 23450939 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 36547 rs16974765 NAPG 8774 18 10529774 NM_003826 NP_003817 C/T P92S plus 23450939 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.21 "N-ethylmaleimide-sensitive factor attachment protein, gamma" 36548 rs16975478 CEACAM7 1087 19 46879556 NM_006890 NP_008821 A/G Y236H plus 23412040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 36549 rs16975478 CEACAM7 1087 19 46879556 NM_006890 NP_008821 A/G Y236H plus 23412040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 36550 rs16975478 CEACAM7 1087 19 46879556 NM_006890 NP_008821 A/G Y236H plus 23412040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19q13.2 carcinoembryonic antigen-related cell adhesion molecule 7 36551 rs16975748 LIPE 3991 19 47622613 NM_005357 NP_005348 A/T S177T plus 23764443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 19q13.2 "lipase, hormone-sensitive" 36552 rs16975748 LIPE 3991 19 47622613 NM_005357 NP_005348 A/T S177T plus 23764443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 19q13.2 "lipase, hormone-sensitive" 36553 rs16975748 LIPE 3991 19 47622613 NM_005357 NP_005348 A/T S177T plus 23764443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2 "lipase, hormone-sensitive" 36554 rs16975750 LIPE 3991 19 47622844 NM_005357 NP_005348 A/G Y100H plus 23764446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 19q13.2 "lipase, hormone-sensitive" 36555 rs16975750 LIPE 3991 19 47622844 NM_005357 NP_005348 A/G Y100H plus 23764446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 19q13.2 "lipase, hormone-sensitive" 36556 rs16975750 LIPE 3991 19 47622844 NM_005357 NP_005348 A/G Y100H plus 23764446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2 "lipase, hormone-sensitive" 36557 rs16976174 PSG3 5671 19 47928892 NM_021016 NP_066296 A/C N198T minus 24796589 1303 SEQUENOM CEPH CEPH (92) 184 0.15 123 by freq 19q13.2 pregnancy specific beta-1-glycoprotein 3 36558 rs16976354 DYX1C1 161582 15 53577706 NM_130810 NP_570722 G/T N38K plus 23662872 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 36559 rs16976354 DYX1C1 161582 15 53577706 NM_130810 NP_570722 G/T N38K plus 23662872 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 36560 rs16976354 DYX1C1 161582 15 53577706 NM_130810 NP_570722 G/T N38K plus 23662872 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 36561 rs16976416 PSG2 5670 19 48271519 NM_031246 NP_112536 A/T Q179L minus 24819330 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 19q13.1-q13.2 pregnancy specific beta-1-glycoprotein 2 36562 rs16976431 PSG2 5670 19 48271529 NM_031246 NP_112536 A/G T176A minus 24819329 1303 SEQUENOM CEPH CEPH (92) 184 0.32 123 by freq 19q13.1-q13.2 pregnancy specific beta-1-glycoprotein 2 36563 rs16976439 PSG2 5670 19 48271397 NM_031246 NP_112536 C/T R220W minus 24819333 1303 SEQUENOM CEPH CEPH (92) 184 0.46 123 by freq 19q13.1-q13.2 pregnancy specific beta-1-glycoprotein 2 36564 rs16976816 ZNF283 284349 19 49031217 XM_371174 XP_371174 A/G G305S plus 23765016 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 19q13.32 zinc finger protein 283 36565 rs16976816 ZNF283 284349 19 49031217 XM_371174 XP_371174 A/G G305S plus 23765016 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 19q13.32 zinc finger protein 283 36566 rs16976816 ZNF283 284349 19 49031217 XM_371174 XP_371174 A/G G305S plus 23765016 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.32 zinc finger protein 283 36567 rs16976937 ZNF221 7638 19 49161987 NM_013359 NP_037491 A/G V165M plus 23554215 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.2 zinc finger protein 221 36568 rs16976937 ZNF221 7638 19 49161987 NM_013359 NP_037491 A/G V165M plus 23554215 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19q13.2 zinc finger protein 221 36569 rs16976937 ZNF221 7638 19 49161987 NM_013359 NP_037491 A/G V165M plus 23554215 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2 zinc finger protein 221 36570 rs16976948 IMPA2 3613 18 11999913 NM_014214 NP_055029 A/G A88T plus 23462327 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18p11.2 inositol(myo)-1(or 4)-monophosphatase 2 36571 rs16976948 IMPA2 3613 18 11999913 NM_014214 NP_055029 A/G A88T plus 23462327 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 18p11.2 inositol(myo)-1(or 4)-monophosphatase 2 36572 rs16976948 IMPA2 3613 18 11999913 NM_014214 NP_055029 A/G A88T plus 23462327 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.2 inositol(myo)-1(or 4)-monophosphatase 2 36573 rs16977447 SYT4 6860 18 39107967 NM_020783 NP_065834 C/T S142N plus 23489434 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q12.3 synaptotagmin IV 36574 rs16977447 SYT4 6860 18 39107967 NM_020783 NP_065834 C/T S142N plus 23489434 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 18q12.3 synaptotagmin IV 36575 rs16977447 SYT4 6860 18 39107967 NM_020783 NP_065834 C/T S142N plus 23489434 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q12.3 synaptotagmin IV 36576 rs16977629 Gup1 145781 15 55713128 NM_152451 NP_689664 C/T A277V plus 24139145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 15q21.2 GRINL1A complex upstream protein 36577 rs16977629 Gup1 145781 15 55713128 NM_152451 NP_689664 C/T A277V plus 24139145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 15q21.2 GRINL1A complex upstream protein 36578 rs16977629 Gup1 145781 15 55713128 NM_152451 NP_689664 C/T A277V plus 24139145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 by freq 15q21.2 GRINL1A complex upstream protein 36579 rs16977686 NIP 90527 15 43198691 NM_144565 NP_653166 C/T S313G plus 24019413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q15.1 homolog of Drosophila Numb-interacting protein 36580 rs16977686 NIP 90527 15 43198691 NM_144565 NP_653166 C/T S313G plus 24019413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q15.1 homolog of Drosophila Numb-interacting protein 36581 rs16977686 NIP 90527 15 43198691 NM_144565 NP_653166 C/T S313G plus 24019413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 15q15.1 homolog of Drosophila Numb-interacting protein 36582 rs16978507 PSTPIP2 9050 18 41822714 NM_024430 NP_077748 C/T I290V plus 24038081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 18q12 proline-serine-threonine phosphatase interacting protein 2 36583 rs16978507 PSTPIP2 9050 18 41822714 NM_024430 NP_077748 C/T I290V plus 24038081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 18q12 proline-serine-threonine phosphatase interacting protein 2 36584 rs16978507 PSTPIP2 9050 18 41822714 NM_024430 NP_077748 C/T I290V plus 24038081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.02 123 by freq 18q12 proline-serine-threonine phosphatase interacting protein 2 36585 rs16978523 ATP5A1 498 18 41929062 NM_004046 NP_004037 A/C A32S plus 23536218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q12-q21 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle" 36586 rs16978523 ATP5A1 498 18 41929062 NM_004046 NP_004037 A/C A32S plus 23536218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 18q12-q21 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle" 36587 rs16978523 ATP5A1 498 18 41929062 NM_004046 NP_004037 A/C A32S plus 23536218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 18q12-q21 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle" 36588 rs16978578 LOXHD1 125336 18 42406067 NM_144612 NP_653213 C/T D398G plus 23499023 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q21.1 lipoxygenase homology domains 1 36589 rs16978578 LOXHD1 125336 18 42406067 NM_144612 NP_653213 C/T D398G plus 23499023 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 18q21.1 lipoxygenase homology domains 1 36590 rs16978578 LOXHD1 125336 18 42406067 NM_144612 NP_653213 C/T D398G plus 23499023 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 18q21.1 lipoxygenase homology domains 1 36591 rs16978712 ZNF224 7767 19 49303719 NM_013398 NP_037530 A/T N522K minus 24814300 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 19q13.2 zinc finger protein 224 36592 rs16978738 ZNF225 7768 19 49328642 NM_013362 NP_037494 A/T T679S plus 23554668 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.2 zinc finger protein 225 36593 rs16978738 ZNF225 7768 19 49328642 NM_013362 NP_037494 A/T T679S plus 23554668 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19q13.2 zinc finger protein 225 36594 rs16978738 ZNF225 7768 19 49328642 NM_013362 NP_037494 A/T T679S plus 23554668 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 19q13.2 zinc finger protein 225 36595 rs16978899 ZNF233 353355 19 49469392 NM_181756 NP_861421 C/T S247P plus 23765489 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 19q13.32 zinc finger protein 233 36596 rs16978899 ZNF233 353355 19 49469392 NM_181756 NP_861421 C/T S247P plus 23765489 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 19q13.32 zinc finger protein 233 36597 rs16978899 ZNF233 353355 19 49469392 NM_181756 NP_861421 C/T S247P plus 23765489 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.32 zinc finger protein 233 36598 rs16978965 ZNF228 7771 19 49525680 NM_013380 NP_037512 C/T G157E plus 23765598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.2 zinc finger protein 228 36599 rs16978965 ZNF228 7771 19 49525680 NM_013380 NP_037512 C/T G157E plus 23765598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 19q13.2 zinc finger protein 228 36600 rs16978965 ZNF228 7771 19 49525680 NM_013380 NP_037512 C/T G157E plus 23765598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2 zinc finger protein 228 36601 rs16979670 ZNF559 84527 19 9313879 NM_032497 NP_115886 A/C T251N plus 23400674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 19p13.2 zinc finger protein 559 36602 rs16979670 ZNF559 84527 19 9313879 NM_032497 NP_115886 A/C T251N plus 23400674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19p13.2 zinc finger protein 559 36603 rs16979670 ZNF559 84527 19 9313879 NM_032497 NP_115886 A/C T251N plus 23400674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 19p13.2 zinc finger protein 559 36604 rs16979907 ZNF177 7730 19 9351760 NM_003451 NP_003442 A/G D94G plus 23400925 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 19p13.2 zinc finger protein 177 36605 rs16979907 ZNF177 7730 19 9351760 NM_003451 NP_003442 A/G D94G plus 23400925 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19p13.2 zinc finger protein 177 36606 rs16979907 ZNF177 7730 19 9351760 NM_003451 NP_003442 A/G D94G plus 23400925 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.2 zinc finger protein 177 36607 rs16979912 OR7C1 26664 19 14771321 NM_198944 NP_945182 A/G S210P plus 23404790 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 36608 rs16979912 OR7C1 26664 19 14771321 NM_198944 NP_945182 A/G S210P plus 23404790 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 36609 rs16979912 OR7C1 26664 19 14771321 NM_198944 NP_945182 A/G S210P plus 23404790 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 36610 rs16980312 OR1I1 126370 19 15059751 XM_065050 XP_065050 C/T I292T plus 23984363 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 36611 rs16980312 OR1I1 126370 19 15059751 XM_065050 XP_065050 C/T I292T plus 23984363 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 36612 rs16980312 OR1I1 126370 19 15059751 XM_065050 XP_065050 C/T I292T plus 23984363 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 19p13.13 "olfactory receptor, family 1, subfamily I, member 1" 36613 rs16980822 OR10H4 126541 19 15921248 XM_065153 XP_065153 A/G H144R plus 23763648 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36614 rs16980822 OR10H4 126541 19 15921248 XM_065153 XP_065153 A/G H144R plus 23763648 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36615 rs16980822 OR10H4 126541 19 15921248 XM_065153 XP_065153 A/G H144R plus 23763648 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36616 rs16980994 OR10H4 126541 19 15921117 XM_065153 XP_065153 A/C N100K plus 23763644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36617 rs16980994 OR10H4 126541 19 15921117 XM_065153 XP_065153 A/C N100K plus 23763644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36618 rs16980994 OR10H4 126541 19 15921117 XM_065153 XP_065153 A/C N100K plus 23763644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19p13.12 "olfactory receptor, family 10, subfamily H, member 4" 36619 rs16981016 BCL2L13 23786 22 16540575 NM_015367 NP_056182 A/G I55V plus 23787547 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 36620 rs16981016 BCL2L13 23786 22 16540575 NM_015367 NP_056182 A/G I55V plus 23787547 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 36621 rs16981016 BCL2L13 23786 22 16540575 NM_015367 NP_056182 A/G I55V plus 23787547 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11 BCL2-like 13 (apoptosis facilitator) 36622 rs16981187 ZBP1 81030 20 55623391 NM_030776 NP_110403 C/G D154H plus 23442441 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20q13.31 Z-DNA binding protein 1 36623 rs16981187 ZBP1 81030 20 55623391 NM_030776 NP_110403 C/G D154H plus 23442441 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20q13.31 Z-DNA binding protein 1 36624 rs16981187 ZBP1 81030 20 55623391 NM_030776 NP_110403 C/G D154H plus 23442441 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.31 Z-DNA binding protein 1 36625 rs16981705 ZNF473 25888 19 55240003 XM_046390 XP_046390 C/T T164M plus 23767743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.33 zinc finger protein 473 36626 rs16981705 ZNF473 25888 19 55240003 XM_046390 XP_046390 C/T T164M plus 23767743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19q13.33 zinc finger protein 473 36627 rs16981705 ZNF473 25888 19 55240003 XM_046390 XP_046390 C/T T164M plus 23767743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.33 zinc finger protein 473 36628 rs16981706 ZNF473 25888 19 55240438 XM_046390 XP_046390 A/G E309G plus 23767746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 19q13.33 zinc finger protein 473 36629 rs16981706 ZNF473 25888 19 55240438 XM_046390 XP_046390 A/G E309G plus 23767746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 by freq 19q13.33 zinc finger protein 473 36630 rs16981706 ZNF473 25888 19 55240438 XM_046390 XP_046390 A/G E309G plus 23767746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.33 zinc finger protein 473 36631 rs16982020 CECR5 27440 22 15993630 NM_017829 NP_060299 C/G R339S plus 23786641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 22q11.2 "cat eye syndrome chromosome region, candidate 5" 36632 rs16982020 CECR5 27440 22 15993630 NM_017829 NP_060299 C/G R339S plus 23786641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 22q11.2 "cat eye syndrome chromosome region, candidate 5" 36633 rs16982020 CECR5 27440 22 15993630 NM_017829 NP_060299 C/G R339S plus 23786641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 22q11.2 "cat eye syndrome chromosome region, candidate 5" 36634 rs16982149 SULT2B1 6820 19 53771090 NM_004605 NP_004596 C/T L36S plus 28447023 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 36635 rs16982149 SULT2B1 6820 19 53771090 NM_177973 NP_814444 C/T L51S plus 28447023 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 36636 rs16982743 SIGLECL1 89858 19 56696715 NM_053003 NP_443729 A/G Q29X plus 23813010 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 by freq 19q13.4 SIGLEC-like 1 36637 rs16982743 SIGLECL1 89858 19 56696715 NM_053003 NP_443729 A/G Q29X plus 23813010 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.43 123 by freq 19q13.4 SIGLEC-like 1 36638 rs16982743 SIGLECL1 89858 19 56696715 NM_053003 NP_443729 A/G Q29X plus 23813010 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 19q13.4 SIGLEC-like 1 36639 rs16983281 DGCR6 8214 22 17272317 NM_005675 NP_005666 C/T A117V plus 23788053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q11.21 DiGeorge syndrome critical region gene 6 36640 rs16983281 DGCR6 8214 22 17272317 NM_005675 NP_005666 C/T A117V plus 23788053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q11.21 DiGeorge syndrome critical region gene 6 36641 rs16983281 DGCR6 8214 22 17272317 NM_005675 NP_005666 C/T A117V plus 23788053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 22q11.21 DiGeorge syndrome critical region gene 6 36642 rs16983353 ZNF615 284370 19 57187961 NM_198480 NP_940882 C/T R727K plus 23776900 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 19q13.41 zinc finger protein 615 36643 rs16983353 ZNF615 284370 19 57187961 NM_198480 NP_940882 C/T R727K plus 23776900 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.45 123 by freq 19q13.41 zinc finger protein 615 36644 rs16983353 ZNF615 284370 19 57187961 NM_198480 NP_940882 C/T R727K plus 23776900 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 19q13.41 zinc finger protein 615 36645 rs16983580 ZNF294 26046 21 29261185 NM_015565 NP_056380 A/G A500V plus 23508366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 21q22.11 zinc finger protein 294 36646 rs16983580 ZNF294 26046 21 29261185 NM_015565 NP_056380 A/G A500V plus 23508366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 21q22.11 zinc finger protein 294 36647 rs16983580 ZNF294 26046 21 29261185 NM_015565 NP_056380 A/G A500V plus 23508366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.11 zinc finger protein 294 36648 rs16983815 ZNF534 147658 19 57633147 XM_496320 XP_496320 C/T H221Y plus 23777600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.41 zinc finger protein 534 36649 rs16983815 ZNF534 147658 19 57633147 XM_496320 XP_496320 C/T H221Y plus 23777600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 19q13.41 zinc finger protein 534 36650 rs16983815 ZNF534 147658 19 57633147 XM_496320 XP_496320 C/T H221Y plus 23777600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.41 zinc finger protein 534 36651 rs16984466 ZNF415 55786 19 58304667 NM_018355 NP_060825 G/T H148P plus 23559063 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.42 zinc finger protein 415 36652 rs16984466 ZNF415 55786 19 58304667 NM_018355 NP_060825 G/T H148P plus 23559063 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 19q13.42 zinc finger protein 415 36653 rs16984466 ZNF415 55786 19 58304667 NM_018355 NP_060825 G/T H148P plus 23559063 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19q13.42 zinc finger protein 415 36654 rs16985357 CSTL1 128817 20 23369089 NM_138283 NP_612140 A/T Y62F plus 23774137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20p11.21 cystatin-like 1 36655 rs16985357 CSTL1 128817 20 23369089 NM_138283 NP_612140 A/T Y62F plus 23774137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p11.21 cystatin-like 1 36656 rs16985357 CSTL1 128817 20 23369089 NM_138283 NP_612140 A/T Y62F plus 23774137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p11.21 cystatin-like 1 36657 rs16985442 SLC12A5 57468 20 44105282 NM_020708 NP_065759 C/G P384A plus 23574897 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 20q13.12 "solute carrier family 12, (potassium-chloride transporter) member 5" 36658 rs16985442 SLC12A5 57468 20 44105282 NM_020708 NP_065759 C/G P384A plus 23574897 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 20q13.12 "solute carrier family 12, (potassium-chloride transporter) member 5" 36659 rs16985442 SLC12A5 57468 20 44105282 NM_020708 NP_065759 C/G P384A plus 23574897 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.12 "solute carrier family 12, (potassium-chloride transporter) member 5" 36660 rs16985486 LILRB3 11025 19 59413028 NM_006864 NP_006855 C/T V574A minus 24817511 1303 SEQUENOM CEPH CEPH (92) 184 0.48 123 by freq 19q13.4 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3" 36661 rs16985644 CST4 1472 20 23617501 NM_001899 NP_001890 A/G D36N minus 24815074 1303 SEQUENOM CEPH CEPH (92) 184 0.13 123 by freq 20p11.21 cystatin S 36662 rs16985729 CST1 1469 20 23676487 NM_001898 NP_001889 G/T R131M minus 24816143 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 20p11.21 cystatin SN 36663 rs16985907 KIR3DL3 115653 19 59938624 NM_153443 NP_703144 C/G A348P plus 23813197 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 19q13.42 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3" 36664 rs16985907 KIR3DL3 115653 19 59938624 NM_153443 NP_703144 C/G A348P plus 23813197 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19q13.42 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3" 36665 rs16985907 KIR3DL3 115653 19 59938624 NM_153443 NP_703144 C/G A348P plus 23813197 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.42 "killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3" 36666 rs16986050 FCAR 2204 19 60092982 NM_002000 NP_001991 A/G S269G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36667 rs16986050 FCAR 2204 19 60092982 NM_002000 NP_001991 A/G S269G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36668 rs16986050 FCAR 2204 19 60092982 NM_002000 NP_001991 A/G S269G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36669 rs16986050 FCAR 2204 19 60092982 NM_133269 NP_579803 A/G S247G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36670 rs16986050 FCAR 2204 19 60092982 NM_133269 NP_579803 A/G S247G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36671 rs16986050 FCAR 2204 19 60092982 NM_133269 NP_579803 A/G S247G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36672 rs16986050 FCAR 2204 19 60092982 NM_133271 NP_579805 A/G S173G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36673 rs16986050 FCAR 2204 19 60092982 NM_133271 NP_579805 A/G S173G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36674 rs16986050 FCAR 2204 19 60092982 NM_133271 NP_579805 A/G S173G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36675 rs16986050 FCAR 2204 19 60092982 NM_133272 NP_579806 A/G S257G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36676 rs16986050 FCAR 2204 19 60092982 NM_133272 NP_579806 A/G S257G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36677 rs16986050 FCAR 2204 19 60092982 NM_133272 NP_579806 A/G S257G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36678 rs16986050 FCAR 2204 19 60092982 NM_133273 NP_579807 A/G S161G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36679 rs16986050 FCAR 2204 19 60092982 NM_133273 NP_579807 A/G S161G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36680 rs16986050 FCAR 2204 19 60092982 NM_133273 NP_579807 A/G S161G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36681 rs16986050 FCAR 2204 19 60092982 NM_133277 NP_579811 A/G S160G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36682 rs16986050 FCAR 2204 19 60092982 NM_133277 NP_579811 A/G S160G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36683 rs16986050 FCAR 2204 19 60092982 NM_133277 NP_579811 A/G S160G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36684 rs16986050 FCAR 2204 19 60092982 NM_133278 NP_579812 A/G S235G plus 23778452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36685 rs16986050 FCAR 2204 19 60092982 NM_133278 NP_579812 A/G S235G plus 23778452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36686 rs16986050 FCAR 2204 19 60092982 NM_133278 NP_579812 A/G S235G plus 23778452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.2-q13.4 "Fc fragment of IgA, receptor for" 36687 rs16986337 SLC2A11 66035 22 22524258 NM_030807 NP_110434 C/T R10W plus 23608527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.2 "solute carrier family 2 (facilitated glucose transporter), member 11" 36688 rs16986337 SLC2A11 66035 22 22524258 NM_030807 NP_110434 C/T R10W plus 23608527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.34 123 by freq 22q11.2 "solute carrier family 2 (facilitated glucose transporter), member 11" 36689 rs16986337 SLC2A11 66035 22 22524258 NM_030807 NP_110434 C/T R10W plus 23608527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q11.2 "solute carrier family 2 (facilitated glucose transporter), member 11" 36690 rs16986465 GGT1 2678 22 23348468 NM_005265 NP_005256 C/T V435A plus 24797255 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 by freq 22q11.23 gamma-glutamyltransferase 1 36691 rs16986465 GGT1 2678 22 23348468 NM_013421 NP_038265 C/T V435A plus 24797255 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 by freq 22q11.23 gamma-glutamyltransferase 1 36692 rs16986465 GGT1 2678 22 23348468 NM_013430 NP_038347 C/T V435A plus 24797255 1303 SEQUENOM CEPH CEPH (92) 184 0.43 123 by freq 22q11.23 gamma-glutamyltransferase 1 36693 rs16986899 NALP5 126206 19 61241322 NM_153447 NP_703148 C/T M912T plus 23627070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 36694 rs16986899 NALP5 126206 19 61241322 NM_153447 NP_703148 C/T M912T plus 23627070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 36695 rs16986899 NALP5 126206 19 61241322 NM_153447 NP_703148 C/T M912T plus 23627070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 36696 rs16987592 TMC2 117532 20 2541862 NM_080751 NP_542789 C/G S573C plus 23547601 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20p13 transmembrane channel-like 2 36697 rs16987592 TMC2 117532 20 2541862 NM_080751 NP_542789 C/G S573C plus 23547601 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 20p13 transmembrane channel-like 2 36698 rs16987592 TMC2 117532 20 2541862 NM_080751 NP_542789 C/G S573C plus 23547601 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p13 transmembrane channel-like 2 36699 rs16987625 RFPL3 10738 22 31078860 NM_006604 NP_006595 C/T M54T plus 24121662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 22q12.3 ret finger protein-like 3 36700 rs16987625 RFPL3 10738 22 31078860 NM_006604 NP_006595 C/T M54T plus 24121662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 22q12.3 ret finger protein-like 3 36701 rs16987625 RFPL3 10738 22 31078860 NM_006604 NP_006595 C/T M54T plus 24121662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.46 123 by freq 22q12.3 ret finger protein-like 3 36702 rs16987627 RFPL1 5988 22 28159614 NM_021026 NP_066306 C/T W65R plus 23589942 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 by freq 22q12.2 ret finger protein-like 1 36703 rs16987627 RFPL1 5988 22 28159614 NM_021026 NP_066306 C/T W65R plus 23589942 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 by freq 22q12.2 ret finger protein-like 1 36704 rs16987627 RFPL1 5988 22 28159614 NM_021026 NP_066306 C/T W65R plus 23589942 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 22q12.2 ret finger protein-like 1 36705 rs16987628 RFPL1 5988 22 28162153 NM_021026 NP_066306 C/T R119X plus 23587452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q12.2 ret finger protein-like 1 36706 rs16987628 RFPL1 5988 22 28162153 NM_021026 NP_066306 C/T R119X plus 23587452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 22q12.2 ret finger protein-like 1 36707 rs16987628 RFPL1 5988 22 28162153 NM_021026 NP_066306 C/T R119X plus 23587452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.2 ret finger protein-like 1 36708 rs16987632 RFPL2 10739 22 30911581 NM_006605 NP_006596 C/G T200S plus 24810808 1303 SEQUENOM CEPH CEPH (92) 184 0.28 123 by freq 22q12.3 ret finger protein-like 2 36709 rs16987932 TIAM1 7074 21 31489454 NM_003253 NP_003244 C/G Q844H plus 23609627 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 21q22.11 T-cell lymphoma invasion and metastasis 1 36710 rs16987932 TIAM1 7074 21 31489454 NM_003253 NP_003244 C/G Q844H plus 23609627 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 21q22.11 T-cell lymphoma invasion and metastasis 1 36711 rs16987932 TIAM1 7074 21 31489454 NM_003253 NP_003244 C/G Q844H plus 23609627 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.11 T-cell lymphoma invasion and metastasis 1 36712 rs16988799 KLK8 11202 19 56195097 NM_007196 NP_009127 C/T V154I plus 23766171 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36713 rs16988799 KLK8 11202 19 56195097 NM_007196 NP_009127 C/T V154I plus 23766171 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36714 rs16988799 KLK8 11202 19 56195097 NM_007196 NP_009127 C/T V154I plus 23766171 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36715 rs16988799 KLK8 11202 19 56195097 NM_144505 NP_653088 C/T V199I plus 23766171 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36716 rs16988799 KLK8 11202 19 56195097 NM_144505 NP_653088 C/T V199I plus 23766171 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36717 rs16988799 KLK8 11202 19 56195097 NM_144505 NP_653088 C/T V199I plus 23766171 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.3-q13.4 kallikrein 8 (neuropsin/ovasin) 36718 rs16988910 SIGLEC9 27180 19 56320434 NM_014441 NP_055256 A/C K131Q plus 23766464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.41 sialic acid binding Ig-like lectin 9 36719 rs16988910 SIGLEC9 27180 19 56320434 NM_014441 NP_055256 A/C K131Q plus 23766464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 19q13.41 sialic acid binding Ig-like lectin 9 36720 rs16988910 SIGLEC9 27180 19 56320434 NM_014441 NP_055256 A/C K131Q plus 23766464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.41 sialic acid binding Ig-like lectin 9 36721 rs16989015 SUHW1 129025 22 21193683 NM_080740 NP_542778 A/G L276F plus 23597814 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 36722 rs16989015 SUHW1 129025 22 21193683 NM_080740 NP_542778 A/G L276F plus 23597814 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 36723 rs16989015 SUHW1 129025 22 21193683 NM_080740 NP_542778 A/G L276F plus 23597814 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 22q11.22 suppressor of hairy wing homolog 1 (Drosophila) 36724 rs16989521 TCP10L 140290 21 32871022 NM_144659 NP_653260 C/T R194H plus 23620146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 21q22.11 t-complex 10 (mouse)-like 36725 rs16989521 TCP10L 140290 21 32871022 NM_144659 NP_653260 C/T R194H plus 23620146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 21q22.11 t-complex 10 (mouse)-like 36726 rs16989521 TCP10L 140290 21 32871022 NM_144659 NP_653260 C/T R194H plus 23620146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.11 t-complex 10 (mouse)-like 36727 rs16989535 DEPDC5 9681 22 30554485 XM_376007 XP_376007 C/T S712F plus 23791095 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q12.3 DEP domain containing 5 36728 rs16989535 DEPDC5 9681 22 30554485 XM_376007 XP_376007 C/T S712F plus 23791095 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q12.3 DEP domain containing 5 36729 rs16989535 DEPDC5 9681 22 30554485 XM_376007 XP_376007 C/T S712F plus 23791095 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.3 DEP domain containing 5 36730 rs16990018 PRNP 5621 20 4628378 NM_000311 NP_000302 A/G N171S plus 23548863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36731 rs16990018 PRNP 5621 20 4628378 NM_000311 NP_000302 A/G N171S plus 23548863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36732 rs16990018 PRNP 5621 20 4628378 NM_000311 NP_000302 A/G N171S plus 23548863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36733 rs16990018 PRNP 5621 20 4628378 NM_183079 NP_898902 A/G N171S plus 23548863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36734 rs16990018 PRNP 5621 20 4628378 NM_183079 NP_898902 A/G N171S plus 23548863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36735 rs16990018 PRNP 5621 20 4628378 NM_183079 NP_898902 A/G N171S plus 23548863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20pter-p12 "prion protein (p27-30) (Creutzfeld-Jakob disease, Gerstmann-Strausler-Scheinker syndrome, fatal familial insomnia)" 36736 rs16990065 SLC5A4 6527 22 30975860 NM_014227 NP_055042 A/G T4M plus 23634482 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 36737 rs16990065 SLC5A4 6527 22 30975860 NM_014227 NP_055042 A/G T4M plus 23634482 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 36738 rs16990065 SLC5A4 6527 22 30975860 NM_014227 NP_055042 A/G T4M plus 23634482 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 22q12.2-q12.3 "solute carrier family 5 (low affinity glucose cotransporter), member 4" 36739 rs16991591 MCM8 84515 20 5885833 NM_032485 NP_115874 A/G N183S plus 23544346 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36740 rs16991591 MCM8 84515 20 5885833 NM_032485 NP_115874 A/G N183S plus 23544346 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36741 rs16991591 MCM8 84515 20 5885833 NM_032485 NP_115874 A/G N183S plus 23544346 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36742 rs16991591 MCM8 84515 20 5885833 NM_182802 NP_877954 A/G N183S plus 23544346 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36743 rs16991591 MCM8 84515 20 5885833 NM_182802 NP_877954 A/G N183S plus 23544346 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36744 rs16991591 MCM8 84515 20 5885833 NM_182802 NP_877954 A/G N183S plus 23544346 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36745 rs16991615 MCM8 84515 20 5896227 NM_032485 NP_115874 A/G E341K plus 23544518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36746 rs16991615 MCM8 84515 20 5896227 NM_032485 NP_115874 A/G E341K plus 23544518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36747 rs16991615 MCM8 84515 20 5896227 NM_032485 NP_115874 A/G E341K plus 23544518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36748 rs16991615 MCM8 84515 20 5896227 NM_182802 NP_877954 A/G E341K plus 23544518 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36749 rs16991615 MCM8 84515 20 5896227 NM_182802 NP_877954 A/G E341K plus 23544518 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36750 rs16991615 MCM8 84515 20 5896227 NM_182802 NP_877954 A/G E341K plus 23544518 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36751 rs16991638 MCM8 84515 20 5922265 NM_032485 NP_115874 A/G N785S plus 23544844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36752 rs16991638 MCM8 84515 20 5922265 NM_032485 NP_115874 A/G N785S plus 23544844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36753 rs16991638 MCM8 84515 20 5922265 NM_032485 NP_115874 A/G N785S plus 23544844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36754 rs16991638 MCM8 84515 20 5922265 NM_182802 NP_877954 A/G N769S plus 23544844 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36755 rs16991638 MCM8 84515 20 5922265 NM_182802 NP_877954 A/G N769S plus 23544844 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36756 rs16991638 MCM8 84515 20 5922265 NM_182802 NP_877954 A/G N769S plus 23544844 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p12.3 MCM8 minichromosome maintenance deficient 8 (S. cerevisiae) 36757 rs16991652 KCNE2 9992 21 34664672 NM_172201 NP_751951 C/G Q9E plus 28461942 1347 PHARMGKB_PAT PA129986109 754 0 123 by freq 21q22.12 "potassium voltage-gated channel, Isk-related family, member 2" 36758 rs16991656 KCNE2 9992 21 34664844 NM_172201 NP_751951 C/T A66V plus 28461944 1347 PHARMGKB_PAT PA129986109 754 0 123 by freq 21q22.12 "potassium voltage-gated channel, Isk-related family, member 2" 36759 rs16992131 ITGB1BP3 27231 19 3893110 NM_014446 NP_055261 A/G E134K plus 23756026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.3 integrin beta 1 binding protein 3 36760 rs16992131 ITGB1BP3 27231 19 3893110 NM_014446 NP_055261 A/G E134K plus 23756026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 19p13.3 integrin beta 1 binding protein 3 36761 rs16992131 ITGB1BP3 27231 19 3893110 NM_014446 NP_055261 A/G E134K plus 23756026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.3 integrin beta 1 binding protein 3 36762 rs16992131 ITGB1BP3 27231 19 3893110 NM_170678 NP_733778 A/G E178K plus 23756026 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.3 integrin beta 1 binding protein 3 36763 rs16992131 ITGB1BP3 27231 19 3893110 NM_170678 NP_733778 A/G E178K plus 23756026 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 19p13.3 integrin beta 1 binding protein 3 36764 rs16992131 ITGB1BP3 27231 19 3893110 NM_170678 NP_733778 A/G E178K plus 23756026 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.3 integrin beta 1 binding protein 3 36765 rs16992915 ARHGAP8 23779 22 43538823 NM_181334 NP_851851 A/G Y177C plus 23604513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.31 Rho GTPase activating protein 8 36766 rs16992915 ARHGAP8 23779 22 43538823 NM_181334 NP_851851 A/G Y177C plus 23604513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q13.31 Rho GTPase activating protein 8 36767 rs16992915 ARHGAP8 23779 22 43538823 NM_181334 NP_851851 A/G Y177C plus 23604513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q13.31 Rho GTPase activating protein 8 36768 rs16993216 FUT5 2527 19 5818267 NM_002034 NP_002025 C/T R157Q plus 24811442 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 19p13.3 "fucosyltransferase 5 (alpha (1,3) fucosyltransferase)" 36769 rs16993929 CBR3 874 21 36432094 NM_001236 NP_001227 C/T P131S plus 23802316 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 21q22.2 carbonyl reductase 3 36770 rs16993929 CBR3 874 21 36432094 NM_001236 NP_001227 C/T P131S plus 23802316 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 21q22.2 carbonyl reductase 3 36771 rs16993929 CBR3 874 21 36432094 NM_001236 NP_001227 C/T P131S plus 23802316 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 21q22.2 carbonyl reductase 3 36772 rs16993997 PREX1 57580 20 46692170 NM_020820 NP_065871 C/T V1240I plus 24082131 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 20q13.13 "phosphatidylinositol 3,4,5-trisphosphate-dependent RAC exchanger 1" 36773 rs16993997 PREX1 57580 20 46692170 NM_020820 NP_065871 C/T V1240I plus 24082131 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 20q13.13 "phosphatidylinositol 3,4,5-trisphosphate-dependent RAC exchanger 1" 36774 rs16993997 PREX1 57580 20 46692170 NM_020820 NP_065871 C/T V1240I plus 24082131 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 20q13.13 "phosphatidylinositol 3,4,5-trisphosphate-dependent RAC exchanger 1" 36775 rs16994063 CHAF1B 8208 21 36709485 NM_005441 NP_005432 A/C K506Q plus 23802362 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 21q22.13 "chromatin assembly factor 1, subunit B (p60)" 36776 rs16994063 CHAF1B 8208 21 36709485 NM_005441 NP_005432 A/C K506Q plus 23802362 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 21q22.13 "chromatin assembly factor 1, subunit B (p60)" 36777 rs16994063 CHAF1B 8208 21 36709485 NM_005441 NP_005432 A/C K506Q plus 23802362 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.13 "chromatin assembly factor 1, subunit B (p60)" 36778 rs16994559 ATP8B3 148229 19 1734146 NM_138813 NP_620168 G/T N1262H plus 23772624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.3 "ATPase, Class I, type 8B, member 3" 36779 rs16994559 ATP8B3 148229 19 1734146 NM_138813 NP_620168 G/T N1262H plus 23772624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19p13.3 "ATPase, Class I, type 8B, member 3" 36780 rs16994559 ATP8B3 148229 19 1734146 NM_138813 NP_620168 G/T N1262H plus 23772624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.3 "ATPase, Class I, type 8B, member 3" 36781 rs16994704 DSCR5 51227 21 37359876 NM_016430 NP_057514 C/T Y68C plus 23802526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36782 rs16994704 DSCR5 51227 21 37359876 NM_016430 NP_057514 C/T Y68C plus 23802526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 21q22.2 Down syndrome critical region gene 5 36783 rs16994704 DSCR5 51227 21 37359876 NM_016430 NP_057514 C/T Y68C plus 23802526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36784 rs16994704 DSCR5 51227 21 37359876 NM_153681 NP_710148 C/T Y118C plus 23802526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36785 rs16994704 DSCR5 51227 21 37359876 NM_153681 NP_710148 C/T Y118C plus 23802526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 21q22.2 Down syndrome critical region gene 5 36786 rs16994704 DSCR5 51227 21 37359876 NM_153681 NP_710148 C/T Y118C plus 23802526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36787 rs16994704 DSCR5 51227 21 37359876 NM_153682 NP_710149 C/T Y94C plus 23802526 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36788 rs16994704 DSCR5 51227 21 37359876 NM_153682 NP_710149 C/T Y94C plus 23802526 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 21q22.2 Down syndrome critical region gene 5 36789 rs16994704 DSCR5 51227 21 37359876 NM_153682 NP_710149 C/T Y94C plus 23802526 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.2 Down syndrome critical region gene 5 36790 rs16995138 GTSE1 51512 22 45045807 NM_016426 NP_057510 A/G A635T plus 23613689 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.2-q13.3 G-2 and S-phase expressed 1 36791 rs16995138 GTSE1 51512 22 45045807 NM_016426 NP_057510 A/G A635T plus 23613689 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 22q13.2-q13.3 G-2 and S-phase expressed 1 36792 rs16995138 GTSE1 51512 22 45045807 NM_016426 NP_057510 A/G A635T plus 23613689 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q13.2-q13.3 G-2 and S-phase expressed 1 36793 rs16995209 PWDMP 57728 4 39090315 NM_025132 NP_079408 A/G G1084S plus 23718715 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4p14 WD repeat membrane protein PWDMP 36794 rs16995209 PWDMP 57728 4 39090315 NM_025132 NP_079408 A/G G1084S plus 23718715 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 4p14 WD repeat membrane protein PWDMP 36795 rs16995209 PWDMP 57728 4 39090315 NM_025132 NP_079408 A/G G1084S plus 23718715 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p14 WD repeat membrane protein PWDMP 36796 rs16995304 PTPN1 5770 20 48631261 NM_002827 NP_002818 A/G G381S plus 28448135 1099 FCOLLINS SUBSET_19_20_21_27 "Finnish (805 type 2 diabetics, 421 normoglycemic controls)" 1226 0 123 by freq 20q13.1-q13.2 "protein tyrosine phosphatase, non-receptor type 1" 36797 rs16995309 PTPN1 5770 20 48631280 NM_002827 NP_002818 C/T P387L plus 28448136 1099 FCOLLINS SUBSET_19_20_21_27 "Finnish (805 type 2 diabetics, 421 normoglycemic controls)" 1226 0.01 123 by freq 20q13.1-q13.2 "protein tyrosine phosphatase, non-receptor type 1" 36798 rs16995376 CYP4F12 66002 19 15645377 NM_023944 NP_076433 C/T P13L plus 23763398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36799 rs16995376 CYP4F12 66002 19 15645377 NM_023944 NP_076433 C/T P13L plus 23763398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36800 rs16995376 CYP4F12 66002 19 15645377 NM_023944 NP_076433 C/T P13L plus 23763398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36801 rs16995378 CYP4F12 66002 19 15645386 NM_023944 NP_076433 C/T T16M plus 23763402 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36802 rs16995378 CYP4F12 66002 19 15645386 NM_023944 NP_076433 C/T T16M plus 23763402 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36803 rs16995378 CYP4F12 66002 19 15645386 NM_023944 NP_076433 C/T T16M plus 23763402 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.1 "cytochrome P450, family 4, subfamily F, polypeptide 12" 36804 rs16995685 DEFB127 140850 20 87576 NM_139074 NP_620713 A/C R71S plus 24121117 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.41 123 by freq 20p13 "defensin, beta 127" 36805 rs16995685 DEFB127 140850 20 87576 NM_139074 NP_620713 A/C R71S plus 24121117 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p13 "defensin, beta 127" 36806 rs16995685 DEFB127 140850 20 87576 NM_139074 NP_620713 A/C R71S plus 24121117 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 by freq 20p13 "defensin, beta 127" 36807 rs16996517 ZFP64 55734 20 50202864 NM_018197 NP_060667 A/T F425Y plus 23785428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36808 rs16996517 ZFP64 55734 20 50202864 NM_018197 NP_060667 A/T F425Y plus 23785428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36809 rs16996517 ZFP64 55734 20 50202864 NM_018197 NP_060667 A/T F425Y plus 23785428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36810 rs16996517 ZFP64 55734 20 50202864 NM_022088 NP_071371 A/T F371Y plus 23785428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36811 rs16996517 ZFP64 55734 20 50202864 NM_022088 NP_071371 A/T F371Y plus 23785428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36812 rs16996517 ZFP64 55734 20 50202864 NM_022088 NP_071371 A/T F371Y plus 23785428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36813 rs16996517 ZFP64 55734 20 50202864 NM_199426 NP_955458 A/T F423Y plus 23785428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36814 rs16996517 ZFP64 55734 20 50202864 NM_199426 NP_955458 A/T F423Y plus 23785428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36815 rs16996517 ZFP64 55734 20 50202864 NM_199426 NP_955458 A/T F423Y plus 23785428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q13.13 zinc finger protein 64 homolog (mouse) 36816 rs16996616 APOL1 8542 22 34986391 NM_003661 NP_003652 A/G D337N plus 23644660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36817 rs16996616 APOL1 8542 22 34986391 NM_003661 NP_003652 A/G D337N plus 23644660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q13.1 "apolipoprotein L, 1" 36818 rs16996616 APOL1 8542 22 34986391 NM_003661 NP_003652 A/G D337N plus 23644660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36819 rs16996616 APOL1 8542 22 34986391 NM_145343 NP_663318 A/G D353N plus 23644660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36820 rs16996616 APOL1 8542 22 34986391 NM_145343 NP_663318 A/G D353N plus 23644660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q13.1 "apolipoprotein L, 1" 36821 rs16996616 APOL1 8542 22 34986391 NM_145343 NP_663318 A/G D353N plus 23644660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36822 rs16996616 APOL1 8542 22 34986391 NM_145344 NP_663319 A/G D337N plus 23644660 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36823 rs16996616 APOL1 8542 22 34986391 NM_145344 NP_663319 A/G D337N plus 23644660 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q13.1 "apolipoprotein L, 1" 36824 rs16996616 APOL1 8542 22 34986391 NM_145344 NP_663319 A/G D337N plus 23644660 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.1 "apolipoprotein L, 1" 36825 rs16997517 CSF2RB 1439 22 35658436 NM_000395 NP_000386 C/T P696S plus 23646876 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 36826 rs16997517 CSF2RB 1439 22 35658436 NM_000395 NP_000386 C/T P696S plus 23646876 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 36827 rs16997517 CSF2RB 1439 22 35658436 NM_000395 NP_000386 C/T P696S plus 23646876 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q13.1 "colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)" 36828 rs16998061 PSCD4 27128 22 36016592 NM_013385 NP_037517 A/G M74V plus 23647751 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q12.3-q13.1 "pleckstrin homology, Sec7 and coiled-coil domains 4" 36829 rs16998061 PSCD4 27128 22 36016592 NM_013385 NP_037517 A/G M74V plus 23647751 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 22q12.3-q13.1 "pleckstrin homology, Sec7 and coiled-coil domains 4" 36830 rs16998061 PSCD4 27128 22 36016592 NM_013385 NP_037517 A/G M74V plus 23647751 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.3-q13.1 "pleckstrin homology, Sec7 and coiled-coil domains 4" 36831 rs16999317 BFSP1 631 20 17422749 NM_001195 NP_001186 G/T D656E plus 23640786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20p11.23-p12.1 "beaded filament structural protein 1, filensin" 36832 rs16999317 BFSP1 631 20 17422749 NM_001195 NP_001186 G/T D656E plus 23640786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 20p11.23-p12.1 "beaded filament structural protein 1, filensin" 36833 rs16999317 BFSP1 631 20 17422749 NM_001195 NP_001186 G/T D656E plus 23640786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p11.23-p12.1 "beaded filament structural protein 1, filensin" 36834 rs16999484 RRBP1 6238 20 17544587 NM_004587 NP_004578 A/G T879M plus 24125722 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20p12 ribosome binding protein 1 homolog 180kDa (dog) 36835 rs16999484 RRBP1 6238 20 17544587 NM_004587 NP_004578 A/G T879M plus 24125722 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20p12 ribosome binding protein 1 homolog 180kDa (dog) 36836 rs16999484 RRBP1 6238 20 17544587 NM_004587 NP_004578 A/G T879M plus 24125722 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 20p12 ribosome binding protein 1 homolog 180kDa (dog) 36837 rs16999593 DNMT1 1786 19 10152181 NM_001379 NP_001370 C/T H97R plus 23982726 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.2 DNA (cytosine-5-)-methyltransferase 1 36838 rs16999593 DNMT1 1786 19 10152181 NM_001379 NP_001370 C/T H97R plus 23982726 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19p13.2 DNA (cytosine-5-)-methyltransferase 1 36839 rs16999593 DNMT1 1786 19 10152181 NM_001379 NP_001370 C/T H97R plus 23982726 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 19p13.2 DNA (cytosine-5-)-methyltransferase 1 36840 rs17000697 APOBEC3B 9582 22 37706467 NM_004900 NP_004891 G/T S109A plus 24810234 1303 SEQUENOM CEPH CEPH (92) 184 0.17 123 by freq 22q13.1-q13.2 "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B" 36841 rs17000961 PPEF2 5470 4 77145678 NM_006239 NP_006230 A/T S575C plus 23270632 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 "protein phosphatase, EF hand calcium-binding domain 2" 36842 rs17000961 PPEF2 5470 4 77145678 NM_006239 NP_006230 A/T S575C plus 23270632 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.25 123 by freq 4q21.21 "protein phosphatase, EF hand calcium-binding domain 2" 36843 rs17000961 PPEF2 5470 4 77145678 NM_006239 NP_006230 A/T S575C plus 23270632 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 4q21.21 "protein phosphatase, EF hand calcium-binding domain 2" 36844 rs17001276 SDAD1 55153 4 77234345 NM_018115 NP_060585 C/T V600I plus 23271566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 SDA1 domain containing 1 36845 rs17001276 SDAD1 55153 4 77234345 NM_018115 NP_060585 C/T V600I plus 23271566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 4q21.21 SDA1 domain containing 1 36846 rs17001276 SDAD1 55153 4 77234345 NM_018115 NP_060585 C/T V600I plus 23271566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q21.21 SDA1 domain containing 1 36847 rs17002888 TCF20 6942 22 40931836 NM_005650 NP_005641 C/T S1325N plus 23577662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36848 rs17002888 TCF20 6942 22 40931836 NM_005650 NP_005641 C/T S1325N plus 23577662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q13.3 transcription factor 20 (AR1) 36849 rs17002888 TCF20 6942 22 40931836 NM_005650 NP_005641 C/T S1325N plus 23577662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36850 rs17002888 TCF20 6942 22 40931836 NM_181492 NP_852469 C/T S1325N plus 23577662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36851 rs17002888 TCF20 6942 22 40931836 NM_181492 NP_852469 C/T S1325N plus 23577662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q13.3 transcription factor 20 (AR1) 36852 rs17002888 TCF20 6942 22 40931836 NM_181492 NP_852469 C/T S1325N plus 23577662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36853 rs17002890 TCF20 6942 22 40932315 NM_005650 NP_005641 C/T M1165I plus 23577676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36854 rs17002890 TCF20 6942 22 40932315 NM_005650 NP_005641 C/T M1165I plus 23577676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q13.3 transcription factor 20 (AR1) 36855 rs17002890 TCF20 6942 22 40932315 NM_005650 NP_005641 C/T M1165I plus 23577676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36856 rs17002890 TCF20 6942 22 40932315 NM_181492 NP_852469 C/T M1165I plus 23577676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36857 rs17002890 TCF20 6942 22 40932315 NM_181492 NP_852469 C/T M1165I plus 23577676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q13.3 transcription factor 20 (AR1) 36858 rs17002890 TCF20 6942 22 40932315 NM_181492 NP_852469 C/T M1165I plus 23577676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.3 transcription factor 20 (AR1) 36859 rs17003048 NFAM1 150372 22 41129942 NM_145912 NP_666017 C/G N187K plus 23578928 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.31 NFAT activation molecule 1 36860 rs17003048 NFAM1 150372 22 41129942 NM_145912 NP_666017 C/G N187K plus 23578928 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q13.31 NFAT activation molecule 1 36861 rs17003048 NFAM1 150372 22 41129942 NM_145912 NP_666017 C/G N187K plus 23578928 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q13.31 NFAT activation molecule 1 36862 rs17003071 FRAS1 80144 4 79515894 NM_020875 NP_065926 C/G D54H plus 23162711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 Fraser syndrome 1 36863 rs17003071 FRAS1 80144 4 79515894 NM_020875 NP_065926 C/G D54H plus 23162711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 4q21.21 Fraser syndrome 1 36864 rs17003071 FRAS1 80144 4 79515894 NM_020875 NP_065926 C/G D54H plus 23162711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4q21.21 Fraser syndrome 1 36865 rs17003071 FRAS1 80144 4 79515894 NM_032863 NP_116252 C/G D54H plus 23162711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 Fraser syndrome 1 36866 rs17003071 FRAS1 80144 4 79515894 NM_032863 NP_116252 C/G D54H plus 23162711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 4q21.21 Fraser syndrome 1 36867 rs17003071 FRAS1 80144 4 79515894 NM_032863 NP_116252 C/G D54H plus 23162711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4q21.21 Fraser syndrome 1 36868 rs17003071 FRAS1 80144 4 79515894 NM_206841 NP_996672 C/G D54H plus 23162711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 Fraser syndrome 1 36869 rs17003071 FRAS1 80144 4 79515894 NM_206841 NP_996672 C/G D54H plus 23162711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 4q21.21 Fraser syndrome 1 36870 rs17003071 FRAS1 80144 4 79515894 NM_206841 NP_996672 C/G D54H plus 23162711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4q21.21 Fraser syndrome 1 36871 rs17003213 FRAS1 80144 4 79708658 NM_206841 NP_996672 C/T A1625V plus 23165008 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.21 Fraser syndrome 1 36872 rs17003213 FRAS1 80144 4 79708658 NM_206841 NP_996672 C/T A1625V plus 23165008 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 4q21.21 Fraser syndrome 1 36873 rs17003213 FRAS1 80144 4 79708658 NM_206841 NP_996672 C/T A1625V plus 23165008 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 4q21.21 Fraser syndrome 1 36874 rs17003394 Rgr 266747 22 22358880 NM_153615 NP_705843 C/T R37C plus 23607227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q11.23 Ral-GDS related protein Rgr 36875 rs17003394 Rgr 266747 22 22358880 NM_153615 NP_705843 C/T R37C plus 23607227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 22q11.23 Ral-GDS related protein Rgr 36876 rs17003394 Rgr 266747 22 22358880 NM_153615 NP_705843 C/T R37C plus 23607227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.23 Ral-GDS related protein Rgr 36877 rs17003397 Rgr 266747 22 22359683 NM_153615 NP_705843 C/T T216M plus 24104688 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q11.23 Ral-GDS related protein Rgr 36878 rs17003397 Rgr 266747 22 22359683 NM_153615 NP_705843 C/T T216M plus 24104688 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q11.23 Ral-GDS related protein Rgr 36879 rs17003397 Rgr 266747 22 22359683 NM_153615 NP_705843 C/T T216M plus 24104688 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 22q11.23 Ral-GDS related protein Rgr 36880 rs17004668 KRTAP10-10 353333 21 44882234 NM_181688 NP_859016 A/G V158M plus 23540507 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 21q22.3 keratin associated protein 10-10 36881 rs17004668 KRTAP10-10 353333 21 44882234 NM_181688 NP_859016 A/G V158M plus 23540507 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.46 123 by freq 21q22.3 keratin associated protein 10-10 36882 rs17004668 KRTAP10-10 353333 21 44882234 NM_181688 NP_859016 A/G V158M plus 23540507 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 21q22.3 keratin associated protein 10-10 36883 rs17004823 CABIN1 23523 22 22771857 NM_012295 NP_036427 A/G D225N plus 23609428 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.23 calcineurin binding protein 1 36884 rs17004823 CABIN1 23523 22 22771857 NM_012295 NP_036427 A/G D225N plus 23609428 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q11.23 calcineurin binding protein 1 36885 rs17004823 CABIN1 23523 22 22771857 NM_012295 NP_036427 A/G D225N plus 23609428 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.23 calcineurin binding protein 1 36886 rs17005371 OTOF 9381 2 26599412 NM_004802 NP_004793 A/G P879S plus 23694053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p23.1 otoferlin 36887 rs17005371 OTOF 9381 2 26599412 NM_004802 NP_004793 A/G P879S plus 23694053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 2p23.1 otoferlin 36888 rs17005371 OTOF 9381 2 26599412 NM_004802 NP_004793 A/G P879S plus 23694053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p23.1 otoferlin 36889 rs17005371 OTOF 9381 2 26599412 NM_194248 NP_919224 A/G P1646S plus 23694053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p23.1 otoferlin 36890 rs17005371 OTOF 9381 2 26599412 NM_194248 NP_919224 A/G P1646S plus 23694053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 2p23.1 otoferlin 36891 rs17005371 OTOF 9381 2 26599412 NM_194248 NP_919224 A/G P1646S plus 23694053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p23.1 otoferlin 36892 rs17005371 OTOF 9381 2 26599412 NM_194322 NP_919303 A/G P956S plus 23694053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p23.1 otoferlin 36893 rs17005371 OTOF 9381 2 26599412 NM_194322 NP_919303 A/G P956S plus 23694053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 2p23.1 otoferlin 36894 rs17005371 OTOF 9381 2 26599412 NM_194322 NP_919303 A/G P956S plus 23694053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p23.1 otoferlin 36895 rs17005371 OTOF 9381 2 26599412 NM_194323 NP_919304 A/G P879S plus 23694053 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p23.1 otoferlin 36896 rs17005371 OTOF 9381 2 26599412 NM_194323 NP_919304 A/G P879S plus 23694053 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 2p23.1 otoferlin 36897 rs17005371 OTOF 9381 2 26599412 NM_194323 NP_919304 A/G P879S plus 23694053 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p23.1 otoferlin 36898 rs17005441 PCYOX1 51449 2 70415898 NM_016297 NP_057381 C/G T414S plus 23875002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p13.3 prenylcysteine oxidase 1 36899 rs17005441 PCYOX1 51449 2 70415898 NM_016297 NP_057381 C/G T414S plus 23875002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2p13.3 prenylcysteine oxidase 1 36900 rs17005441 PCYOX1 51449 2 70415898 NM_016297 NP_057381 C/G T414S plus 23875002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2p13.3 prenylcysteine oxidase 1 36901 rs17005827 FRMD4B 23150 3 69537520 XM_114303 XP_114303 C/T G34S plus 23299644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3p14.2 GRP1-binding protein GRSP1 36902 rs17005827 FRMD4B 23150 3 69537520 XM_114303 XP_114303 C/T G34S plus 23299644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 3p14.2 GRP1-binding protein GRSP1 36903 rs17005827 FRMD4B 23150 3 69537520 XM_114303 XP_114303 C/T G34S plus 23299644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 3p14.2 GRP1-binding protein GRSP1 36904 rs17005831 FRMD4B 23150 3 69537615 XM_114303 XP_114303 C/G A2G plus 23299664 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 3p14.2 GRP1-binding protein GRSP1 36905 rs17005831 FRMD4B 23150 3 69537615 XM_114303 XP_114303 C/G A2G plus 23299664 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3p14.2 GRP1-binding protein GRSP1 36906 rs17005831 FRMD4B 23150 3 69537615 XM_114303 XP_114303 C/G A2G plus 23299664 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p14.2 GRP1-binding protein GRSP1 36907 rs17006436 CD207 50489 2 70971766 NM_015717 NP_056532 A/G P213S plus 23217484 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13 "CD207 antigen, langerin" 36908 rs17006436 CD207 50489 2 70971766 NM_015717 NP_056532 A/G P213S plus 23217484 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2p13 "CD207 antigen, langerin" 36909 rs17006436 CD207 50489 2 70971766 NM_015717 NP_056532 A/G P213S plus 23217484 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p13 "CD207 antigen, langerin" 36910 rs17006625 PCAF 8850 3 20136100 NM_003884 NP_003875 A/G N386S plus 23894918 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3p24 p300/CBP-associated factor 36911 rs17006625 PCAF 8850 3 20136100 NM_003884 NP_003875 A/G N386S plus 23894918 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 3p24 p300/CBP-associated factor 36912 rs17006625 PCAF 8850 3 20136100 NM_003884 NP_003875 A/G N386S plus 23894918 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 3p24 p300/CBP-associated factor 36913 rs17006830 MCP 4179 1 204328875 NM_002389 NP_002380 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36914 rs17006830 MCP 4179 1 204328875 NM_002389 NP_002380 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36915 rs17006830 MCP 4179 1 204328875 NM_002389 NP_002380 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36916 rs17006830 MCP 4179 1 204328875 NM_153826 NP_722548 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36917 rs17006830 MCP 4179 1 204328875 NM_153826 NP_722548 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36918 rs17006830 MCP 4179 1 204328875 NM_153826 NP_722548 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36919 rs17006830 MCP 4179 1 204328875 NM_172350 NP_758860 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36920 rs17006830 MCP 4179 1 204328875 NM_172350 NP_758860 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36921 rs17006830 MCP 4179 1 204328875 NM_172350 NP_758860 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36922 rs17006830 MCP 4179 1 204328875 NM_172351 NP_758861 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36923 rs17006830 MCP 4179 1 204328875 NM_172351 NP_758861 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36924 rs17006830 MCP 4179 1 204328875 NM_172351 NP_758861 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36925 rs17006830 MCP 4179 1 204328875 NM_172352 NP_758862 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36926 rs17006830 MCP 4179 1 204328875 NM_172352 NP_758862 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36927 rs17006830 MCP 4179 1 204328875 NM_172352 NP_758862 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36928 rs17006830 MCP 4179 1 204328875 NM_172353 NP_758863 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36929 rs17006830 MCP 4179 1 204328875 NM_172353 NP_758863 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36930 rs17006830 MCP 4179 1 204328875 NM_172353 NP_758863 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36931 rs17006830 MCP 4179 1 204328875 NM_172354 NP_758864 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36932 rs17006830 MCP 4179 1 204328875 NM_172354 NP_758864 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36933 rs17006830 MCP 4179 1 204328875 NM_172354 NP_758864 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36934 rs17006830 MCP 4179 1 204328875 NM_172355 NP_758865 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36935 rs17006830 MCP 4179 1 204328875 NM_172355 NP_758865 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36936 rs17006830 MCP 4179 1 204328875 NM_172355 NP_758865 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36937 rs17006830 MCP 4179 1 204328875 NM_172356 NP_758866 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36938 rs17006830 MCP 4179 1 204328875 NM_172356 NP_758866 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36939 rs17006830 MCP 4179 1 204328875 NM_172356 NP_758866 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36940 rs17006830 MCP 4179 1 204328875 NM_172357 NP_758867 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36941 rs17006830 MCP 4179 1 204328875 NM_172357 NP_758867 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36942 rs17006830 MCP 4179 1 204328875 NM_172357 NP_758867 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36943 rs17006830 MCP 4179 1 204328875 NM_172358 NP_758868 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36944 rs17006830 MCP 4179 1 204328875 NM_172358 NP_758868 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36945 rs17006830 MCP 4179 1 204328875 NM_172358 NP_758868 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36946 rs17006830 MCP 4179 1 204328875 NM_172359 NP_758869 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36947 rs17006830 MCP 4179 1 204328875 NM_172359 NP_758869 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36948 rs17006830 MCP 4179 1 204328875 NM_172359 NP_758869 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36949 rs17006830 MCP 4179 1 204328875 NM_172360 NP_758870 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36950 rs17006830 MCP 4179 1 204328875 NM_172360 NP_758870 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36951 rs17006830 MCP 4179 1 204328875 NM_172360 NP_758870 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36952 rs17006830 MCP 4179 1 204328875 NM_172361 NP_758871 A/G D266N plus 23669181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36953 rs17006830 MCP 4179 1 204328875 NM_172361 NP_758871 A/G D266N plus 23669181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36954 rs17006830 MCP 4179 1 204328875 NM_172361 NP_758871 A/G D266N plus 23669181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)" 36955 rs17009061 ALMS1 7840 2 73591095 NM_015120 NP_055935 A/G R1928Q plus 23703115 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p13 Alstrom syndrome 1 36956 rs17009061 ALMS1 7840 2 73591095 NM_015120 NP_055935 A/G R1928Q plus 23703115 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p13 Alstrom syndrome 1 36957 rs17009061 ALMS1 7840 2 73591095 NM_015120 NP_055935 A/G R1928Q plus 23703115 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p13 Alstrom syndrome 1 36958 rs17009684 FATJ 79633 4 126731258 NM_024582 NP_078858 A/G K2126E plus 23389437 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q28.1 fat-like cadherin FATJ 36959 rs17009684 FATJ 79633 4 126731258 NM_024582 NP_078858 A/G K2126E plus 23389437 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q28.1 fat-like cadherin FATJ 36960 rs17009684 FATJ 79633 4 126731258 NM_024582 NP_078858 A/G K2126E plus 23389437 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q28.1 fat-like cadherin FATJ 36961 rs17009792 SLC4A5 57835 2 74400978 NM_021196 NP_067019 C/T S251N plus 23217774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36962 rs17009792 SLC4A5 57835 2 74400978 NM_021196 NP_067019 C/T S251N plus 23217774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36963 rs17009792 SLC4A5 57835 2 74400978 NM_021196 NP_067019 C/T S251N plus 23217774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36964 rs17009792 SLC4A5 57835 2 74400978 NM_033323 NP_201580 C/T S251N plus 23217774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36965 rs17009792 SLC4A5 57835 2 74400978 NM_033323 NP_201580 C/T S251N plus 23217774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36966 rs17009792 SLC4A5 57835 2 74400978 NM_033323 NP_201580 C/T S251N plus 23217774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36967 rs17009792 SLC4A5 57835 2 74400978 NM_133478 NP_597812 C/T S251N plus 23217774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36968 rs17009792 SLC4A5 57835 2 74400978 NM_133478 NP_597812 C/T S251N plus 23217774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36969 rs17009792 SLC4A5 57835 2 74400978 NM_133478 NP_597812 C/T S251N plus 23217774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36970 rs17009792 SLC4A5 57835 2 74400978 NM_133479 NP_597813 C/T S251N plus 23217774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36971 rs17009792 SLC4A5 57835 2 74400978 NM_133479 NP_597813 C/T S251N plus 23217774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36972 rs17009792 SLC4A5 57835 2 74400978 NM_133479 NP_597813 C/T S251N plus 23217774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 2p13 "solute carrier family 4, sodium bicarbonate cotransporter, member 5" 36973 rs17010021 LOXL3 84695 2 74673194 NM_032603 NP_115992 A/T I615F plus 23876922 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2p13 lysyl oxidase-like 3 36974 rs17010021 LOXL3 84695 2 74673194 NM_032603 NP_115992 A/T I615F plus 23876922 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2p13 lysyl oxidase-like 3 36975 rs17010021 LOXL3 84695 2 74673194 NM_032603 NP_115992 A/T I615F plus 23876922 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 2p13 lysyl oxidase-like 3 36976 rs17010210 CAPN13 92291 2 30897628 NM_144575 NP_653176 A/G H249Y plus 24156759 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p22-p21 calpain 13 36977 rs17010210 CAPN13 92291 2 30897628 NM_144575 NP_653176 A/G H249Y plus 24156759 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2p22-p21 calpain 13 36978 rs17010210 CAPN13 92291 2 30897628 NM_144575 NP_653176 A/G H249Y plus 24156759 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 2p22-p21 calpain 13 36979 rs17011368 XDH 7498 2 31502568 NM_000379 NP_000370 C/T I703V plus 23695148 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p23-p22 xanthine dehydrogenase 36980 rs17011368 XDH 7498 2 31502568 NM_000379 NP_000370 C/T I703V plus 23695148 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 2p23-p22 xanthine dehydrogenase 36981 rs17011368 XDH 7498 2 31502568 NM_000379 NP_000370 C/T I703V plus 23695148 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 2p23-p22 xanthine dehydrogenase 36982 rs17011882 PLXNA2 5362 1 204641172 NM_025179 NP_079455 C/G A805G plus 24142035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32.2 plexin A2 36983 rs17011882 PLXNA2 5362 1 204641172 NM_025179 NP_079455 C/G A805G plus 24142035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q32.2 plexin A2 36984 rs17011882 PLXNA2 5362 1 204641172 NM_025179 NP_079455 C/G A805G plus 24142035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1q32.2 plexin A2 36985 rs17012064 PTPN13 5783 4 88051171 NM_006264 NP_006255 C/T S1725P plus 23162389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36986 rs17012064 PTPN13 5783 4 88051171 NM_006264 NP_006255 C/T S1725P plus 23162389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36987 rs17012064 PTPN13 5783 4 88051171 NM_006264 NP_006255 C/T S1725P plus 23162389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36988 rs17012064 PTPN13 5783 4 88051171 NM_080683 NP_542414 C/T S1744P plus 23162389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36989 rs17012064 PTPN13 5783 4 88051171 NM_080683 NP_542414 C/T S1744P plus 23162389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36990 rs17012064 PTPN13 5783 4 88051171 NM_080683 NP_542414 C/T S1744P plus 23162389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36991 rs17012064 PTPN13 5783 4 88051171 NM_080684 NP_542415 C/T S1553P plus 23162389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36992 rs17012064 PTPN13 5783 4 88051171 NM_080684 NP_542415 C/T S1553P plus 23162389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36993 rs17012064 PTPN13 5783 4 88051171 NM_080684 NP_542415 C/T S1553P plus 23162389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36994 rs17012064 PTPN13 5783 4 88051171 NM_080685 NP_542416 C/T S1749P plus 23162389 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36995 rs17012064 PTPN13 5783 4 88051171 NM_080685 NP_542416 C/T S1749P plus 23162389 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36996 rs17012064 PTPN13 5783 4 88051171 NM_080685 NP_542416 C/T S1749P plus 23162389 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4q21.3 "protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)" 36997 rs17012739 PLK4 10733 4 129172569 NM_014264 NP_055079 G/T E830D plus 23985400 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 4q27-q28 polo-like kinase 4 (Drosophila) 36998 rs17012739 PLK4 10733 4 129172569 NM_014264 NP_055079 G/T E830D plus 23985400 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 4q27-q28 polo-like kinase 4 (Drosophila) 36999 rs17012739 PLK4 10733 4 129172569 NM_014264 NP_055079 G/T E830D plus 23985400 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 by freq 4q27-q28 polo-like kinase 4 (Drosophila) 37000 rs17013181 IBSP 3381 4 89089942 NM_004967 NP_004958 A/G R219G plus 23231583 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37001 rs17013181 IBSP 3381 4 89089942 NM_004967 NP_004958 A/G R219G plus 23231583 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.41 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37002 rs17013181 IBSP 3381 4 89089942 NM_004967 NP_004958 A/G R219G plus 23231583 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37003 rs17013182 IBSP 3381 4 89090053 NM_004967 NP_004958 A/G T256A plus 23883289 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37004 rs17013182 IBSP 3381 4 89090053 NM_004967 NP_004958 A/G T256A plus 23883289 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37005 rs17013182 IBSP 3381 4 89090053 NM_004967 NP_004958 A/G T256A plus 23883289 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 4q21-q25 "integrin-binding sialoprotein (bone sialoprotein, bone sialoprotein II)" 37006 rs17013238 SELO 83642 22 48958157 NM_031454 NP_113642 A/G E638K plus 23795382 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.33 selenoprotein O 37007 rs17013238 SELO 83642 22 48958157 NM_031454 NP_113642 A/G E638K plus 23795382 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 22q13.33 selenoprotein O 37008 rs17013238 SELO 83642 22 48958157 NM_031454 NP_113642 A/G E638K plus 23795382 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q13.33 selenoprotein O 37009 rs17013285 MEPE 56955 4 89124187 NM_020203 NP_064588 A/G V330I plus 23883524 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 by freq 4q21.1 "matrix, extracellular phosphoglycoprotein with ASARM motif (bone)" 37010 rs17013285 MEPE 56955 4 89124187 NM_020203 NP_064588 A/G V330I plus 23883524 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q21.1 "matrix, extracellular phosphoglycoprotein with ASARM motif (bone)" 37011 rs17013285 MEPE 56955 4 89124187 NM_020203 NP_064588 A/G V330I plus 23883524 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.36 123 by freq 4q21.1 "matrix, extracellular phosphoglycoprotein with ASARM motif (bone)" 37012 rs17013371 TSAP6 55240 2 119721542 NM_018234 NP_060704 A/G A184T plus 23252701 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q14.2 dudulin 2 37013 rs17013371 TSAP6 55240 2 119721542 NM_018234 NP_060704 A/G A184T plus 23252701 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 2q14.2 dudulin 2 37014 rs17013371 TSAP6 55240 2 119721542 NM_018234 NP_060704 A/G A184T plus 23252701 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q14.2 dudulin 2 37015 rs17013371 TSAP6 55240 2 119721542 NM_182915 NP_878919 A/G A194T plus 23252701 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q14.2 dudulin 2 37016 rs17013371 TSAP6 55240 2 119721542 NM_182915 NP_878919 A/G A194T plus 23252701 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 2q14.2 dudulin 2 37017 rs17013371 TSAP6 55240 2 119721542 NM_182915 NP_878919 A/G A194T plus 23252701 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q14.2 dudulin 2 37018 rs17014118 HERC6 55008 4 89676474 XM_496710 XP_496710 C/T F418L plus 23237744 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 4q22.1 hect domain and RLD 6 37019 rs17014118 HERC6 55008 4 89676474 XM_496710 XP_496710 C/T F418L plus 23237744 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 4q22.1 hect domain and RLD 6 37020 rs17014118 HERC6 55008 4 89676474 XM_496710 XP_496710 C/T F418L plus 23237744 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 4q22.1 hect domain and RLD 6 37021 rs17014143 HERC5 51191 4 89742304 NM_016323 NP_057407 A/G A301T plus 23238021 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 4q22.1-q23 hect domain and RLD 5 37022 rs17014143 HERC5 51191 4 89742304 NM_016323 NP_057407 A/G A301T plus 23238021 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 4q22.1-q23 hect domain and RLD 5 37023 rs17014143 HERC5 51191 4 89742304 NM_016323 NP_057407 A/G A301T plus 23238021 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 4q22.1-q23 hect domain and RLD 5 37024 rs17015215 IRF6 3664 1 206352475 NM_006147 NP_006138 C/T V274I plus 24155311 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1q32.3-q41 interferon regulatory factor 6 37025 rs17015215 IRF6 3664 1 206352475 NM_006147 NP_006138 C/T V274I plus 24155311 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q32.3-q41 interferon regulatory factor 6 37026 rs17015215 IRF6 3664 1 206352475 NM_006147 NP_006138 C/T V274I plus 24155311 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 by freq 1q32.3-q41 interferon regulatory factor 6 37027 rs17016875 TOP2B 7155 3 25625816 NM_001068 NP_001059 C/T T1314A plus 23189989 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3p24 topoisomerase (DNA) II beta 180kDa 37028 rs17016875 TOP2B 7155 3 25625816 NM_001068 NP_001059 C/T T1314A plus 23189989 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3p24 topoisomerase (DNA) II beta 180kDa 37029 rs17016875 TOP2B 7155 3 25625816 NM_001068 NP_001059 C/T T1314A plus 23189989 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p24 topoisomerase (DNA) II beta 180kDa 37030 rs17018900 GYPE 2996 4 145155517 NM_002102 NP_002093 C/G R78P plus 23366488 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q31.1 glycophorin E 37031 rs17018900 GYPE 2996 4 145155517 NM_002102 NP_002093 C/G R78P plus 23366488 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q31.1 glycophorin E 37032 rs17018900 GYPE 2996 4 145155517 NM_002102 NP_002093 C/G R78P plus 23366488 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 4q31.1 glycophorin E 37033 rs17018900 GYPE 2996 4 145155517 NM_198682 NP_941391 C/G R78P plus 23366488 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q31.1 glycophorin E 37034 rs17018900 GYPE 2996 4 145155517 NM_198682 NP_941391 C/G R78P plus 23366488 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q31.1 glycophorin E 37035 rs17018900 GYPE 2996 4 145155517 NM_198682 NP_941391 C/G R78P plus 23366488 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 4q31.1 glycophorin E 37036 rs17020328 CEBPZ 10153 2 37367079 NM_005760 NP_005751 C/T K303R plus 23712020 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 2p22.3 CCAAT/enhancer binding protein zeta 37037 rs17020328 CEBPZ 10153 2 37367079 NM_005760 NP_005751 C/T K303R plus 23712020 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 2p22.3 CCAAT/enhancer binding protein zeta 37038 rs17020328 CEBPZ 10153 2 37367079 NM_005760 NP_005751 C/T K303R plus 23712020 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 2p22.3 CCAAT/enhancer binding protein zeta 37039 rs17020956 C4BPA 722 1 203675876 NM_000715 NP_000706 C/T A60V plus 23668993 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "complement component 4 binding protein, alpha" 37040 rs17020956 C4BPA 722 1 203675876 NM_000715 NP_000706 C/T A60V plus 23668993 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1q32 "complement component 4 binding protein, alpha" 37041 rs17020956 C4BPA 722 1 203675876 NM_000715 NP_000706 C/T A60V plus 23668993 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "complement component 4 binding protein, alpha" 37042 rs17021877 IKBKE 9641 1 203040799 XM_375834 XP_375834 A/G A371T plus 23703050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 37043 rs17021877 IKBKE 9641 1 203040799 XM_375834 XP_375834 A/G A371T plus 23703050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 37044 rs17021877 IKBKE 9641 1 203040799 XM_375834 XP_375834 A/G A371T plus 23703050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon" 37045 rs17022678 TBX15 6913 1 119139729 XM_371284 XP_371284 C/G P420A plus 23668621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p11.1 T-box 15 37046 rs17022678 TBX15 6913 1 119139729 XM_371284 XP_371284 C/G P420A plus 23668621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1p11.1 T-box 15 37047 rs17022678 TBX15 6913 1 119139729 XM_371284 XP_371284 C/G P420A plus 23668621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p11.1 T-box 15 37048 rs17024795 PDHA2 5161 4 97119605 NM_005390 NP_005381 C/G R376G plus 23309392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q22-q23 pyruvate dehydrogenase (lipoamide) alpha 2 37049 rs17024795 PDHA2 5161 4 97119605 NM_005390 NP_005381 C/G R376G plus 23309392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q22-q23 pyruvate dehydrogenase (lipoamide) alpha 2 37050 rs17024795 PDHA2 5161 4 97119605 NM_005390 NP_005381 C/G R376G plus 23309392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q22-q23 pyruvate dehydrogenase (lipoamide) alpha 2 37051 rs17027505 ESSPL 345062 4 152561042 NM_183375 NP_899231 C/T L130S plus 23735633 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q31.23 epidermis-specific serine protease-like protein 37052 rs17027505 ESSPL 345062 4 152561042 NM_183375 NP_899231 C/T L130S plus 23735633 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4q31.23 epidermis-specific serine protease-like protein 37053 rs17027505 ESSPL 345062 4 152561042 NM_183375 NP_899231 C/T L130S plus 23735633 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q31.23 epidermis-specific serine protease-like protein 37054 rs17027633 OVGP1 5016 1 111674298 NM_002557 NP_002548 G/T D332E plus 23860906 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 37055 rs17027633 OVGP1 5016 1 111674298 NM_002557 NP_002548 G/T D332E plus 23860906 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 37056 rs17027633 OVGP1 5016 1 111674298 NM_002557 NP_002548 G/T D332E plus 23860906 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 1p13 "oviductal glycoprotein 1, 120kDa (mucin 9, oviductin)" 37057 rs17029215 MTP 4547 4 100878983 NM_000253 NP_000244 A/C D384A plus 23331505 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 37058 rs17029215 MTP 4547 4 100878983 NM_000253 NP_000244 A/C D384A plus 23331505 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 37059 rs17029215 MTP 4547 4 100878983 NM_000253 NP_000244 A/C D384A plus 23331505 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 37060 rs17030648 THADA 63892 2 43430494 NM_022065 NP_071348 A/G C1668R plus 23699403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p22.1 thyroid adenoma associated 37061 rs17030648 THADA 63892 2 43430494 NM_022065 NP_071348 A/G C1668R plus 23699403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 2p22.1 thyroid adenoma associated 37062 rs17030648 THADA 63892 2 43430494 NM_022065 NP_071348 A/G C1668R plus 23699403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p22.1 thyroid adenoma associated 37063 rs17031056 THADA 63892 2 43709270 NM_022065 NP_071348 C/T V699I plus 24159105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 2p22.1 thyroid adenoma associated 37064 rs17031056 THADA 63892 2 43709270 NM_022065 NP_071348 C/T V699I plus 24159105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p22.1 thyroid adenoma associated 37065 rs17031056 THADA 63892 2 43709270 NM_022065 NP_071348 C/T V699I plus 24159105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 2p22.1 thyroid adenoma associated 37066 rs17031056 THADA 63892 2 43709270 NM_198554 NP_940956 C/T V409I plus 24159105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 2p22.1 thyroid adenoma associated 37067 rs17031056 THADA 63892 2 43709270 NM_198554 NP_940956 C/T V409I plus 24159105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p22.1 thyroid adenoma associated 37068 rs17031056 THADA 63892 2 43709270 NM_198554 NP_940956 C/T V409I plus 24159105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 2p22.1 thyroid adenoma associated 37069 rs17031279 CDHJ 54798 4 155515709 NM_017639 NP_060109 A/G T2112M plus 23688600 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 4q31.3 protocadherin protein CDHJ 37070 rs17031279 CDHJ 54798 4 155515709 NM_017639 NP_060109 A/G T2112M plus 23688600 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 4q31.3 protocadherin protein CDHJ 37071 rs17031279 CDHJ 54798 4 155515709 NM_017639 NP_060109 A/G T2112M plus 23688600 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q31.3 protocadherin protein CDHJ 37072 rs17031394 CDHJ 54798 4 155577267 NM_017639 NP_060109 C/G T1480R plus 23688692 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 4q31.3 protocadherin protein CDHJ 37073 rs17031394 CDHJ 54798 4 155577267 NM_017639 NP_060109 C/G T1480R plus 23688692 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 4q31.3 protocadherin protein CDHJ 37074 rs17031394 CDHJ 54798 4 155577267 NM_017639 NP_060109 C/G T1480R plus 23688692 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 4q31.3 protocadherin protein CDHJ 37075 rs17034186 STAB2 55576 12 102490752 NM_017564 NP_060034 A/G I110V plus 23456146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q23.3 stabilin 2 37076 rs17034186 STAB2 55576 12 102490752 NM_017564 NP_060034 A/G I110V plus 23456146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 12q23.3 stabilin 2 37077 rs17034186 STAB2 55576 12 102490752 NM_017564 NP_060034 A/G I110V plus 23456146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q23.3 stabilin 2 37078 rs17034336 STAB2 55576 12 102567041 NM_017564 NP_060034 A/G R787Q plus 23457203 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12q23.3 stabilin 2 37079 rs17034336 STAB2 55576 12 102567041 NM_017564 NP_060034 A/G R787Q plus 23457203 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 12q23.3 stabilin 2 37080 rs17034336 STAB2 55576 12 102567041 NM_017564 NP_060034 A/G R787Q plus 23457203 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 12q23.3 stabilin 2 37081 rs17034433 STAB2 55576 12 102626485 NM_017564 NP_060034 A/C N1736T plus 23458024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q23.3 stabilin 2 37082 rs17034433 STAB2 55576 12 102626485 NM_017564 NP_060034 A/C N1736T plus 23458024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q23.3 stabilin 2 37083 rs17034433 STAB2 55576 12 102626485 NM_017564 NP_060034 A/C N1736T plus 23458024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12q23.3 stabilin 2 37084 rs17034499 UBE4B 10277 1 10125039 NM_006048 NP_006039 A/G V476I plus 23156390 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p36.3 "ubiquitination factor E4B (UFD2 homolog, yeast)" 37085 rs17034499 UBE4B 10277 1 10125039 NM_006048 NP_006039 A/G V476I plus 23156390 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 1p36.3 "ubiquitination factor E4B (UFD2 homolog, yeast)" 37086 rs17034499 UBE4B 10277 1 10125039 NM_006048 NP_006039 A/G V476I plus 23156390 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.3 "ubiquitination factor E4B (UFD2 homolog, yeast)" 37087 rs17035206 HCFC2 29915 12 102978780 NM_013320 NP_037452 C/G G268A plus 23253037 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q23.3 host cell factor 2 37088 rs17035206 HCFC2 29915 12 102978780 NM_013320 NP_037452 C/G G268A plus 23253037 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 12q23.3 host cell factor 2 37089 rs17035206 HCFC2 29915 12 102978780 NM_013320 NP_037452 C/G G268A plus 23253037 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q23.3 host cell factor 2 37090 rs17035364 PLEK 5341 2 68504147 NM_002664 NP_002655 C/T R5W plus 23190556 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 2p13.3 pleckstrin 37091 rs17035364 PLEK 5341 2 68504147 NM_002664 NP_002655 C/T R5W plus 23190556 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 2p13.3 pleckstrin 37092 rs17035364 PLEK 5341 2 68504147 NM_002664 NP_002655 C/T R5W plus 23190556 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 2p13.3 pleckstrin 37093 rs17035649 CELSR2 1952 1 109524648 NM_001408 NP_001399 A/G T2387A plus 23199977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p21 "cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)" 37094 rs17035649 CELSR2 1952 1 109524648 NM_001408 NP_001399 A/G T2387A plus 23199977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)" 37095 rs17035649 CELSR2 1952 1 109524648 NM_001408 NP_001399 A/G T2387A plus 23199977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p21 "cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)" 37096 rs17036091 SULT1C1 6819 2 108379554 NM_001056 NP_001047 C/T Y128H plus 28446953 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 1" 37097 rs17036091 SULT1C1 6819 2 108379554 NM_176825 NP_789795 C/T Y139H plus 28446953 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 1" 37098 rs17036104 SULT1C1 6819 2 108380554 NM_001056 NP_001047 G/T S255A plus 28446959 1166 PHARMGKB_PPII PA128747821 240 0.05 123 by freq 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 1" 37099 rs17036104 SULT1C1 6819 2 108380554 NM_176825 NP_789795 G/T S266A plus 28446959 1166 PHARMGKB_PPII PA128747821 240 0.05 123 by freq 2q11.1-q11.2 "sulfotransferase family, cytosolic, 1C, member 1" 37100 rs17036993 FBXO11 80204 2 47978275 NM_012167 NP_036299 A/T T42S plus 23695307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p21 F-box protein 11 37101 rs17036993 FBXO11 80204 2 47978275 NM_012167 NP_036299 A/T T42S plus 23695307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p21 F-box protein 11 37102 rs17036993 FBXO11 80204 2 47978275 NM_012167 NP_036299 A/T T42S plus 23695307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p21 F-box protein 11 37103 rs17036993 FBXO11 80204 2 47978275 NM_018693 NP_061163 A/T T42S plus 23695307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p21 F-box protein 11 37104 rs17036993 FBXO11 80204 2 47978275 NM_018693 NP_061163 A/T T42S plus 23695307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p21 F-box protein 11 37105 rs17036993 FBXO11 80204 2 47978275 NM_018693 NP_061163 A/T T42S plus 23695307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p21 F-box protein 11 37106 rs17036993 FBXO11 80204 2 47978275 NM_025133 NP_079409 A/T T42S plus 23695307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p21 F-box protein 11 37107 rs17036993 FBXO11 80204 2 47978275 NM_025133 NP_079409 A/T T42S plus 23695307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p21 F-box protein 11 37108 rs17036993 FBXO11 80204 2 47978275 NM_025133 NP_079409 A/T T42S plus 23695307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p21 F-box protein 11 37109 rs17037102 DKK2 27123 4 108203398 NM_014421 NP_055236 A/G R146Q minus 24169646 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 4q25 dickkopf homolog 2 (Xenopus laevis) 37110 rs17037102 DKK2 27123 4 108203398 NM_014421 NP_055236 A/G R146Q minus 24169646 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 4q25 dickkopf homolog 2 (Xenopus laevis) 37111 rs17037102 DKK2 27123 4 108203398 NM_014421 NP_055236 A/G R146Q minus 24169646 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 4q25 dickkopf homolog 2 (Xenopus laevis) 37112 rs17037102 DKK2 27123 4 108203398 NM_014421 NP_055236 A/G R146Q minus 28459771 549 KYUGEN CP CEPH (78) 156 0.09 123 by freq 4q25 dickkopf homolog 2 (Xenopus laevis) 37113 rs17037102 DKK2 27123 4 108203398 NM_014421 NP_055236 A/G R146Q minus 28459771 1335 KYUGEN JPK2 Japanese (100) 200 0.27 123 by freq 4q25 dickkopf homolog 2 (Xenopus laevis) 37114 rs17038460 POLR3B 55703 12 105350881 NM_018082 NP_060552 A/G T740A plus 23270903 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12q24.11 polymerase (RNA) III (DNA directed) polypeptide B 37115 rs17038460 POLR3B 55703 12 105350881 NM_018082 NP_060552 A/G T740A plus 23270903 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 12q24.11 polymerase (RNA) III (DNA directed) polypeptide B 37116 rs17038460 POLR3B 55703 12 105350881 NM_018082 NP_060552 A/G T740A plus 23270903 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q24.11 polymerase (RNA) III (DNA directed) polypeptide B 37117 rs17038482 KBTBD9 114818 2 23533427 XM_496546 XP_496546 C/T P634L plus 23878273 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37118 rs17038482 KBTBD9 114818 2 23533427 XM_496546 XP_496546 C/T P634L plus 23878273 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37119 rs17038482 KBTBD9 114818 2 23533427 XM_496546 XP_496546 C/T P634L plus 23878273 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37120 rs17038795 FGD5 152273 3 14838064 XM_371619 XP_371619 A/G A1062T plus 23278093 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3p25.1 "FYVE, RhoGEF and PH domain containing 5" 37121 rs17038795 FGD5 152273 3 14838064 XM_371619 XP_371619 A/G A1062T plus 23278093 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 3p25.1 "FYVE, RhoGEF and PH domain containing 5" 37122 rs17038795 FGD5 152273 3 14838064 XM_371619 XP_371619 A/G A1062T plus 23278093 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 3p25.1 "FYVE, RhoGEF and PH domain containing 5" 37123 rs17038956 CDKL4 344387 2 39344749 XM_293029 XP_293029 A/T D218V plus 23219495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 2p22.3 cyclin-dependent kinase-like 4 37124 rs17038956 CDKL4 344387 2 39344749 XM_293029 XP_293029 A/T D218V plus 23219495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 2p22.3 cyclin-dependent kinase-like 4 37125 rs17038956 CDKL4 344387 2 39344749 XM_293029 XP_293029 A/T D218V plus 23219495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p22.3 cyclin-dependent kinase-like 4 37126 rs17039250 SBLF 11037 2 48719447 NM_006873 NP_006864 A/C K8N plus 24156947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 2p16.3 stoned B-like factor 37127 rs17039250 SBLF 11037 2 48719447 NM_006873 NP_006864 A/C K8N plus 24156947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p16.3 stoned B-like factor 37128 rs17039250 SBLF 11037 2 48719447 NM_006873 NP_006864 A/C K8N plus 24156947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 by freq 2p16.3 stoned B-like factor 37129 rs17039250 SALF 286749 2 48719447 NM_172311 NP_758515 A/C K8N plus 24156947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.42 123 by freq 2p16.3 stoned B/TFIIA-alpha/beta-like factor 37130 rs17039250 SALF 286749 2 48719447 NM_172311 NP_758515 A/C K8N plus 24156947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 2p16.3 stoned B/TFIIA-alpha/beta-like factor 37131 rs17039250 SALF 286749 2 48719447 NM_172311 NP_758515 A/C K8N plus 24156947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 by freq 2p16.3 stoned B/TFIIA-alpha/beta-like factor 37132 rs17040344 GLTDC1 360203 9 135742064 NM_182974 NP_892019 A/G P219S plus 23600318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 9q34.3 galactosyltransferase family 6 domain containing 1 37133 rs17040344 GLTDC1 360203 9 135742064 NM_182974 NP_892019 A/G P219S plus 23600318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 9q34.3 galactosyltransferase family 6 domain containing 1 37134 rs17040344 GLTDC1 360203 9 135742064 NM_182974 NP_892019 A/G P219S plus 23600318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q34.3 galactosyltransferase family 6 domain containing 1 37135 rs17040745 ANAPC1 64682 2 112282895 NM_022662 NP_073153 C/T H1231R plus 24801266 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 by freq 2q12.1 anaphase promoting complex subunit 1 37136 rs17040982 FSTL5 56884 4 162664605 NM_020116 NP_064501 C/T K815E plus 23917332 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q32.3 follistatin-like 5 37137 rs17040982 FSTL5 56884 4 162664605 NM_020116 NP_064501 C/T K815E plus 23917332 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 4q32.3 follistatin-like 5 37138 rs17040982 FSTL5 56884 4 162664605 NM_020116 NP_064501 C/T K815E plus 23917332 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 4q32.3 follistatin-like 5 37139 rs17041850 ACOXL 55289 2 111566746 NM_018308 NP_060778 C/T P358L plus 23934630 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q13 acyl-Coenzyme A oxidase-like 37140 rs17041850 ACOXL 55289 2 111566746 NM_018308 NP_060778 C/T P358L plus 23934630 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2q13 acyl-Coenzyme A oxidase-like 37141 rs17041850 ACOXL 55289 2 111566746 NM_018308 NP_060778 C/T P358L plus 23934630 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 2q13 acyl-Coenzyme A oxidase-like 37142 rs17045574 KBTBD9 114818 2 23706572 XM_496546 XP_496546 A/C S2995Y plus 23850451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37143 rs17045574 KBTBD9 114818 2 23706572 XM_496546 XP_496546 A/C S2995Y plus 23850451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37144 rs17045574 KBTBD9 114818 2 23706572 XM_496546 XP_496546 A/C S2995Y plus 23850451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 2p24.1 kelch repeat and BTB (POZ) domain containing 9 37145 rs17046663 GPATC2 55105 1 214181658 NM_018040 NP_060510 A/G R212K minus 24815084 1303 SEQUENOM CEPH CEPH (92) 184 0.37 123 by freq 1q41 G patch domain containing 2 37146 rs17047660 CR1 1378 1 204171251 NM_000573 NP_000564 A/G K1590E plus 23669149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37147 rs17047660 CR1 1378 1 204171251 NM_000573 NP_000564 A/G K1590E plus 23669149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37148 rs17047660 CR1 1378 1 204171251 NM_000573 NP_000564 A/G K1590E plus 23669149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37149 rs17047660 CR1 1378 1 204171251 NM_000651 NP_000642 A/G K2040E plus 23669149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37150 rs17047660 CR1 1378 1 204171251 NM_000651 NP_000642 A/G K2040E plus 23669149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37151 rs17047660 CR1 1378 1 204171251 NM_000651 NP_000642 A/G K2040E plus 23669149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37152 rs17047661 CR1 1378 1 204171284 NM_000573 NP_000564 A/G R1601G plus 23669150 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37153 rs17047661 CR1 1378 1 204171284 NM_000573 NP_000564 A/G R1601G plus 23669150 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37154 rs17047661 CR1 1378 1 204171284 NM_000573 NP_000564 A/G R1601G plus 23669150 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37155 rs17047661 CR1 1378 1 204171284 NM_000651 NP_000642 A/G R2051G plus 23669150 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37156 rs17047661 CR1 1378 1 204171284 NM_000651 NP_000642 A/G R2051G plus 23669150 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37157 rs17047661 CR1 1378 1 204171284 NM_000651 NP_000642 A/G R2051G plus 23669150 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 "complement component (3b/4b) receptor 1, including Knops blood group system" 37158 rs17050126 SYNPO2 171024 4 120336604 XM_050219 XP_050219 C/T M1233T plus 23281779 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q27 synaptopodin 2 37159 rs17050126 SYNPO2 171024 4 120336604 XM_050219 XP_050219 C/T M1233T plus 23281779 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4q27 synaptopodin 2 37160 rs17050126 SYNPO2 171024 4 120336604 XM_050219 XP_050219 C/T M1233T plus 23281779 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q27 synaptopodin 2 37161 rs17050152 SYNPO2 171024 4 120305662 XM_050219 XP_050219 A/G A179T plus 23281413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q27 synaptopodin 2 37162 rs17050152 SYNPO2 171024 4 120305662 XM_050219 XP_050219 A/G A179T plus 23281413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4q27 synaptopodin 2 37163 rs17050152 SYNPO2 171024 4 120305662 XM_050219 XP_050219 A/G A179T plus 23281413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q27 synaptopodin 2 37164 rs17050550 OGG1 4968 3 9767744 NM_002542 NP_002533 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37165 rs17050550 OGG1 4968 3 9767744 NM_016819 NP_058212 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37166 rs17050550 OGG1 4968 3 9767744 NM_016820 NP_058213 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37167 rs17050550 OGG1 4968 3 9767744 NM_016821 NP_058214 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37168 rs17050550 OGG1 4968 3 9767744 NM_016826 NP_058434 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37169 rs17050550 OGG1 4968 3 9767744 NM_016827 NP_058436 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37170 rs17050550 OGG1 4968 3 9767744 NM_016828 NP_058437 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37171 rs17050550 OGG1 4968 3 9767744 NM_016829 NP_058438 G/T A85S plus 24795956 1303 SEQUENOM CEPH CEPH (92) 184 0.04 123 by freq 3p26.2 8-oxoguanine DNA glycosylase 37172 rs17051276 PDE5A 8654 4 120885667 NM_001083 NP_001074 A/C S181A plus 23913126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37173 rs17051276 PDE5A 8654 4 120885667 NM_001083 NP_001074 A/C S181A plus 23913126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37174 rs17051276 PDE5A 8654 4 120885667 NM_001083 NP_001074 A/C S181A plus 23913126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37175 rs17051276 PDE5A 8654 4 120885667 NM_033431 NP_237223 A/C S181A plus 23913126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37176 rs17051276 PDE5A 8654 4 120885667 NM_033431 NP_237223 A/C S181A plus 23913126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37177 rs17051276 PDE5A 8654 4 120885667 NM_033431 NP_237223 A/C S181A plus 23913126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37178 rs17051276 PDE5A 8654 4 120885667 NM_033437 NP_246273 A/C S129A plus 23913126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37179 rs17051276 PDE5A 8654 4 120885667 NM_033437 NP_246273 A/C S129A plus 23913126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37180 rs17051276 PDE5A 8654 4 120885667 NM_033437 NP_246273 A/C S129A plus 23913126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 4q25-q27 "phosphodiesterase 5A, cGMP-specific" 37181 rs17052019 NKX2-5 1482 5 172594646 NM_004387 NP_004378 G/T D16A plus 23955975 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 5q34 "NK2 transcription factor related, locus 5 (Drosophila)" 37182 rs17052019 NKX2-5 1482 5 172594646 NM_004387 NP_004378 G/T D16A plus 23955975 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 5q34 "NK2 transcription factor related, locus 5 (Drosophila)" 37183 rs17052019 NKX2-5 1482 5 172594646 NM_004387 NP_004378 G/T D16A plus 23955975 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 by freq 5q34 "NK2 transcription factor related, locus 5 (Drosophila)" 37184 rs17052920 TKT 7086 3 53244127 NM_001064 NP_001055 C/T I181V plus 23273867 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3p14.3 transketolase (Wernicke-Korsakoff syndrome) 37185 rs17052920 TKT 7086 3 53244127 NM_001064 NP_001055 C/T I181V plus 23273867 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3p14.3 transketolase (Wernicke-Korsakoff syndrome) 37186 rs17052920 TKT 7086 3 53244127 NM_001064 NP_001055 C/T I181V plus 23273867 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p14.3 transketolase (Wernicke-Korsakoff syndrome) 37187 rs17053341 DOCK5 80005 8 25212519 NM_024940 NP_079216 A/G Q250R plus 23519840 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p21.2 dedicator of cytokinesis 5 37188 rs17053341 DOCK5 80005 8 25212519 NM_024940 NP_079216 A/G Q250R plus 23519840 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 8p21.2 dedicator of cytokinesis 5 37189 rs17053341 DOCK5 80005 8 25212519 NM_024940 NP_079216 A/G Q250R plus 23519840 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 8p21.2 dedicator of cytokinesis 5 37190 rs17054318 PLEKHG1 57480 6 151253950 XM_027307 XP_027307 C/T L1321S plus 23428144 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37191 rs17054318 PLEKHG1 57480 6 151253950 XM_027307 XP_027307 C/T L1321S plus 23428144 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37192 rs17054318 PLEKHG1 57480 6 151253950 XM_027307 XP_027307 C/T L1321S plus 23428144 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37193 rs17054374 ITK 3702 5 156582533 NM_005546 NP_005537 A/G R193Q plus 23473719 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q31-q32 IL2-inducible T-cell kinase 37194 rs17054374 ITK 3702 5 156582533 NM_005546 NP_005537 A/G R193Q plus 23473719 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5q31-q32 IL2-inducible T-cell kinase 37195 rs17054374 ITK 3702 5 156582533 NM_005546 NP_005537 A/G R193Q plus 23473719 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q31-q32 IL2-inducible T-cell kinase 37196 rs17054477 EBF2 64641 8 25764048 NM_022659 NP_073150 C/T G290S plus 23527380 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p21.2 early B-cell factor 2 37197 rs17054477 EBF2 64641 8 25764048 NM_022659 NP_073150 C/T G290S plus 23527380 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8p21.2 early B-cell factor 2 37198 rs17054477 EBF2 64641 8 25764048 NM_022659 NP_073150 C/T G290S plus 23527380 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21.2 early B-cell factor 2 37199 rs17057133 TMEM2 23670 9 71549231 NM_013390 NP_037522 C/T I1010V plus 24096999 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 9q13-q21 transmembrane protein 2 37200 rs17057133 TMEM2 23670 9 71549231 NM_013390 NP_037522 C/T I1010V plus 24096999 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9q13-q21 transmembrane protein 2 37201 rs17057133 TMEM2 23670 9 71549231 NM_013390 NP_037522 C/T I1010V plus 24096999 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 9q13-q21 transmembrane protein 2 37202 rs17057255 EPHX2 2053 8 27417158 NM_001979 NP_001970 C/T R103C plus 23575059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 37203 rs17057255 EPHX2 2053 8 27417158 NM_001979 NP_001970 C/T R103C plus 23575059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 37204 rs17057255 EPHX2 2053 8 27417158 NM_001979 NP_001970 C/T R103C plus 23575059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21-p12 "epoxide hydrolase 2, cytoplasmic" 37205 rs17057523 SCARA3 51435 8 27584365 NM_016240 NP_057324 C/T F467L plus 24085989 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 8p21 "scavenger receptor class A, member 3" 37206 rs17057523 SCARA3 51435 8 27584365 NM_016240 NP_057324 C/T F467L plus 24085989 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 8p21 "scavenger receptor class A, member 3" 37207 rs17057523 SCARA3 51435 8 27584365 NM_016240 NP_057324 C/T F467L plus 24085989 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 8p21 "scavenger receptor class A, member 3" 37208 rs17057718 IL17RD 54756 3 57111625 NM_017563 NP_060033 C/T V157M plus 23946034 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 3p21.2 interleukin 17 receptor D 37209 rs17057718 IL17RD 54756 3 57111625 NM_017563 NP_060033 C/T V157M plus 23946034 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 3p21.2 interleukin 17 receptor D 37210 rs17057718 IL17RD 54756 3 57111625 NM_017563 NP_060033 C/T V157M plus 23946034 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 3p21.2 interleukin 17 receptor D 37211 rs17057901 TOPK 55872 8 27724506 NM_018492 NP_060962 C/G E220D plus 23578585 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p21.2 T-LAK cell-originated protein kinase 37212 rs17057901 TOPK 55872 8 27724506 NM_018492 NP_060962 C/G E220D plus 23578585 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8p21.2 T-LAK cell-originated protein kinase 37213 rs17057901 TOPK 55872 8 27724506 NM_018492 NP_060962 C/G E220D plus 23578585 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21.2 T-LAK cell-originated protein kinase 37214 rs17058153 TMC1 117531 9 72636713 NM_138691 NP_619636 C/T M486T plus 23470236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 9q21.12 transmembrane channel-like 1 37215 rs17058153 TMC1 117531 9 72636713 NM_138691 NP_619636 C/T M486T plus 23470236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 9q21.12 transmembrane channel-like 1 37216 rs17058153 TMC1 117531 9 72636713 NM_138691 NP_619636 C/T M486T plus 23470236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q21.12 transmembrane channel-like 1 37217 rs17058845 FLNB 2317 3 58084268 NM_001457 NP_001448 A/G E1179K plus 23282712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3p14.3 "filamin B, beta (actin binding protein 278)" 37218 rs17058845 FLNB 2317 3 58084268 NM_001457 NP_001448 A/G E1179K plus 23282712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.05 123 by freq 3p14.3 "filamin B, beta (actin binding protein 278)" 37219 rs17058845 FLNB 2317 3 58084268 NM_001457 NP_001448 A/G E1179K plus 23282712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 3p14.3 "filamin B, beta (actin binding protein 278)" 37220 rs17059339 ZNF516 9658 18 72253452 XM_496278 XP_496278 C/T R1495H plus 23554260 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 18q23 zinc finger protein 516 37221 rs17059339 ZNF516 9658 18 72253452 XM_496278 XP_496278 C/T R1495H plus 23554260 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 18q23 zinc finger protein 516 37222 rs17059339 ZNF516 9658 18 72253452 XM_496278 XP_496278 C/T R1495H plus 23554260 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 18q23 zinc finger protein 516 37223 rs17059362 ZNF516 9658 18 72273295 XM_496278 XP_496278 A/G A867V plus 24071934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.39 123 by freq 18q23 zinc finger protein 516 37224 rs17059362 ZNF516 9658 18 72273295 XM_496278 XP_496278 A/G A867V plus 24071934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 18q23 zinc finger protein 516 37225 rs17059362 ZNF516 9658 18 72273295 XM_496278 XP_496278 A/G A867V plus 24071934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.48 123 by freq 18q23 zinc finger protein 516 37226 rs17062589 SPATA4 132851 4 177489279 NM_144644 NP_653245 C/T Y149C plus 23208221 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q34.2 spermatogenesis associated 4 37227 rs17062589 SPATA4 132851 4 177489279 NM_144644 NP_653245 C/T Y149C plus 23208221 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q34.2 spermatogenesis associated 4 37228 rs17062589 SPATA4 132851 4 177489279 NM_144644 NP_653245 C/T Y149C plus 23208221 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q34.2 spermatogenesis associated 4 37229 rs17063167 AKAP11 11215 13 41775112 NM_016248 NP_057332 A/C L1410F plus 23739661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37230 rs17063167 AKAP11 11215 13 41775112 NM_016248 NP_057332 A/C L1410F plus 23739661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37231 rs17063167 AKAP11 11215 13 41775112 NM_016248 NP_057332 A/C L1410F plus 23739661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37232 rs17063167 AKAP11 11215 13 41775112 NM_144490 NP_652761 A/C L1410F plus 23739661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37233 rs17063167 AKAP11 11215 13 41775112 NM_144490 NP_652761 A/C L1410F plus 23739661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37234 rs17063167 AKAP11 11215 13 41775112 NM_144490 NP_652761 A/C L1410F plus 23739661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q13.3 A kinase (PRKA) anchor protein 11 37235 rs17064618 MYOM2 9172 8 1993290 NM_003970 NP_003961 C/T T182M plus 23774232 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 37236 rs17064618 MYOM2 9172 8 1993290 NM_003970 NP_003961 C/T T182M plus 23774232 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 37237 rs17064618 MYOM2 9172 8 1993290 NM_003970 NP_003961 C/T T182M plus 23774232 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 by freq 8p23.3 "myomesin (M-protein) 2, 165kDa" 37238 rs17065127 HAK 115701 18 54353211 NM_052947 NP_443179 C/T K1493E plus 23628477 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 18q21.31-q21.32 heart alpha-kinase 37239 rs17065127 HAK 115701 18 54353211 NM_052947 NP_443179 C/T K1493E plus 23628477 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 18q21.31-q21.32 heart alpha-kinase 37240 rs17065127 HAK 115701 18 54353211 NM_052947 NP_443179 C/T K1493E plus 23628477 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18q21.31-q21.32 heart alpha-kinase 37241 rs17070905 ADAMTS9 56999 3 64482897 NM_182920 NP_891550 C/T R1933Q plus 23877557 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37242 rs17070905 ADAMTS9 56999 3 64482897 NM_182920 NP_891550 C/T R1933Q plus 23877557 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37243 rs17070905 ADAMTS9 56999 3 64482897 NM_182920 NP_891550 C/T R1933Q plus 23877557 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37244 rs17070967 ADAMTS9 56999 3 64502315 NM_182920 NP_891550 C/T K1740R plus 23877687 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37245 rs17070967 ADAMTS9 56999 3 64502315 NM_182920 NP_891550 C/T K1740R plus 23877687 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37246 rs17070967 ADAMTS9 56999 3 64502315 NM_182920 NP_891550 C/T K1740R plus 23877687 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 3p14.3-p14.2 "a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9" 37247 rs17071550 SERPINB11 89778 18 59534334 NM_080475 NP_536723 C/T T148M plus 24041493 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 37248 rs17071550 SERPINB11 89778 18 59534334 NM_080475 NP_536723 C/T T148M plus 24041493 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 37249 rs17071550 SERPINB11 89778 18 59534334 NM_080475 NP_536723 C/T T148M plus 24041493 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11" 37250 rs17072097 SERPINB10 5273 18 59733731 NM_005024 NP_005015 G/T S3A plus 23531754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37251 rs17072097 SERPINB10 5273 18 59733731 NM_005024 NP_005015 G/T S3A plus 23531754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37252 rs17072097 SERPINB10 5273 18 59733731 NM_005024 NP_005015 G/T S3A plus 23531754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37253 rs17072146 SERPINB10 5273 18 59738033 NM_005024 NP_005015 A/G G135D plus 24058691 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37254 rs17072146 SERPINB10 5273 18 59738033 NM_005024 NP_005015 A/G G135D plus 24058691 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37255 rs17072146 SERPINB10 5273 18 59738033 NM_005024 NP_005015 A/G G135D plus 24058691 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 18q21.3 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10" 37256 rs17072218 ADPRTL1 143 13 23918863 NM_006437 NP_006428 A/G R1108C plus 23434190 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.05 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 37257 rs17072218 ADPRTL1 143 13 23918863 NM_006437 NP_006428 A/G R1108C plus 23434190 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 37258 rs17072218 ADPRTL1 143 13 23918863 NM_006437 NP_006428 A/G R1108C plus 23434190 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 13q11 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 37259 rs17072442 SLC16A10 117247 6 111650105 NM_018593 NP_061063 A/C K508Q plus 24027949 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q21-q22 "solute carrier family 16 (monocarboxylic acid transporters), member 10" 37260 rs17072442 SLC16A10 117247 6 111650105 NM_018593 NP_061063 A/C K508Q plus 24027949 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6q21-q22 "solute carrier family 16 (monocarboxylic acid transporters), member 10" 37261 rs17072442 SLC16A10 117247 6 111650105 NM_018593 NP_061063 A/C K508Q plus 24027949 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6q21-q22 "solute carrier family 16 (monocarboxylic acid transporters), member 10" 37262 rs17073260 WISP3 8838 6 112489016 NM_003880 NP_003871 C/T R60C plus 23391070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37263 rs17073260 WISP3 8838 6 112489016 NM_003880 NP_003871 C/T R60C plus 23391070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37264 rs17073260 WISP3 8838 6 112489016 NM_003880 NP_003871 C/T R60C plus 23391070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37265 rs17073260 WISP3 8838 6 112489016 NM_130396 NP_569080 C/T R38C plus 23391070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37266 rs17073260 WISP3 8838 6 112489016 NM_130396 NP_569080 C/T R38C plus 23391070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37267 rs17073260 WISP3 8838 6 112489016 NM_130396 NP_569080 C/T R38C plus 23391070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37268 rs17073260 WISP3 8838 6 112489016 NM_198239 NP_937882 C/T R78C plus 23391070 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37269 rs17073260 WISP3 8838 6 112489016 NM_198239 NP_937882 C/T R78C plus 23391070 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37270 rs17073260 WISP3 8838 6 112489016 NM_198239 NP_937882 C/T R78C plus 23391070 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22-q23 WNT1 inducible signaling pathway protein 3 37271 rs17073498 STX11 8676 6 144549603 NM_003764 NP_003755 A/G R49Q plus 24030902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q24.1 syntaxin 11 37272 rs17073498 STX11 8676 6 144549603 NM_003764 NP_003755 A/G R49Q plus 24030902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q24.1 syntaxin 11 37273 rs17073498 STX11 8676 6 144549603 NM_003764 NP_003755 A/G R49Q plus 24030902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 6q24.1 syntaxin 11 37274 rs17074311 STK10 6793 5 171449967 NM_005990 NP_005981 A/G P520L plus 23754187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q35.1 serine/threonine kinase 10 37275 rs17074311 STK10 6793 5 171449967 NM_005990 NP_005981 A/G P520L plus 23754187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5q35.1 serine/threonine kinase 10 37276 rs17074311 STK10 6793 5 171449967 NM_005990 NP_005981 A/G P520L plus 23754187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q35.1 serine/threonine kinase 10 37277 rs17075173 GUCY1B2 2974 13 50488434 NM_004129 NP_004120 C/T V445I plus 23343471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 37278 rs17075173 GUCY1B2 2974 13 50488434 NM_004129 NP_004120 C/T V445I plus 23343471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 by freq 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 37279 rs17075173 GUCY1B2 2974 13 50488434 NM_004129 NP_004120 C/T V445I plus 23343471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q14.2-q14.3 "guanylate cyclase 1, soluble, beta 2" 37280 rs17075385 FBXO30 84085 6 146168090 NM_032145 NP_115521 C/G S382C plus 23975807 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q24 F-box protein 30 37281 rs17075385 FBXO30 84085 6 146168090 NM_032145 NP_115521 C/G S382C plus 23975807 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q24 F-box protein 30 37282 rs17075385 FBXO30 84085 6 146168090 NM_032145 NP_115521 C/G S382C plus 23975807 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 6q24 F-box protein 30 37283 rs17076657 LGR8 122042 13 31269361 NM_130806 NP_570718 A/G I604V plus 23941527 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 13q12.3 leucine-rich repeat-containing G protein-coupled receptor 8 37284 rs17076657 LGR8 122042 13 31269361 NM_130806 NP_570718 A/G I604V plus 23941527 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 13q12.3 leucine-rich repeat-containing G protein-coupled receptor 8 37285 rs17076657 LGR8 122042 13 31269361 NM_130806 NP_570718 A/G I604V plus 23941527 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.26 123 by freq 13q12.3 leucine-rich repeat-containing G protein-coupled receptor 8 37286 rs17076703 TUBA2 7278 13 18646181 NM_006001 NP_005992 A/T D392V minus 24817377 1303 SEQUENOM CEPH CEPH (92) 184 0.07 123 by freq 13q11 "tubulin, alpha 2" 37287 rs17076986 KNSL7 56992 3 44868292 NM_020242 NP_064627 A/C E1272D plus 23337634 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3p21.32 kinesin-like 7 37288 rs17076986 KNSL7 56992 3 44868292 NM_020242 NP_064627 A/C E1272D plus 23337634 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 3p21.32 kinesin-like 7 37289 rs17076986 KNSL7 56992 3 44868292 NM_020242 NP_064627 A/C E1272D plus 23337634 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p21.32 kinesin-like 7 37290 rs17077022 TGM4 7047 3 44923495 NM_003241 NP_003232 A/G I376V plus 23337753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 37291 rs17077022 TGM4 7047 3 44923495 NM_003241 NP_003232 A/G I376V plus 23337753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 37292 rs17077022 TGM4 7047 3 44923495 NM_003241 NP_003232 A/G I376V plus 23337753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p22-p21.33 transglutaminase 4 (prostate) 37293 rs17077958 LPAAT-e 55326 8 6569809 NM_018361 NP_060831 A/G Y66C plus 23339536 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p23.1 acid acyltransferase-epsilon 37294 rs17077958 LPAAT-e 55326 8 6569809 NM_018361 NP_060831 A/G Y66C plus 23339536 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 8p23.1 acid acyltransferase-epsilon 37295 rs17077958 LPAAT-e 55326 8 6569809 NM_018361 NP_060831 A/G Y66C plus 23339536 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 8p23.1 acid acyltransferase-epsilon 37296 rs17078347 PC-LKC 54825 5 175950245 NM_017675 NP_060145 A/C L1164M plus 23942818 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.26 123 by freq 5q35.3 protocadherin LKC 37297 rs17078347 PC-LKC 54825 5 175950245 NM_017675 NP_060145 A/C L1164M plus 23942818 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 5q35.3 protocadherin LKC 37298 rs17078347 PC-LKC 54825 5 175950245 NM_017675 NP_060145 A/C L1164M plus 23942818 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.37 123 by freq 5q35.3 protocadherin LKC 37299 rs17078601 SACS 26278 13 22804983 NM_014363 NP_055178 C/G P3531A plus 23993608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37300 rs17078601 SACS 26278 13 22804983 NM_014363 NP_055178 C/G P3531A plus 23993608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37301 rs17078601 SACS 26278 13 22804983 NM_014363 NP_055178 C/G P3531A plus 23993608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37302 rs17078605 SACS 26278 13 22805909 NM_014363 NP_055178 A/G V3222A plus 23993621 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37303 rs17078605 SACS 26278 13 22805909 NM_014363 NP_055178 A/G V3222A plus 23993621 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37304 rs17078605 SACS 26278 13 22805909 NM_014363 NP_055178 A/G V3222A plus 23993621 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 13q12 spastic ataxia of Charlevoix-Saguenay (sacsin) 37305 rs17078857 GRM6 2916 5 178341449 NM_000843 NP_000834 A/T T817S minus 28447228 914 HG_BONN_CNS_SNPS EURO96 European 174 0.02 123 by freq 5q35 "glutamate receptor, metabotropic 6" 37306 rs17078874 GRM6 2916 5 178342533 NM_000843 NP_000834 C/T A807V minus 28447223 914 HG_BONN_CNS_SNPS EURO96 European 170 0.12 123 by freq 5q35 "glutamate receptor, metabotropic 6" 37307 rs17078877 GRM6 2916 5 178342819 NM_000843 NP_000834 A/G M712V minus 28447220 914 HG_BONN_CNS_SNPS EURO96 European 160 0.02 123 by freq 5q35 "glutamate receptor, metabotropic 6" 37308 rs17078896 GRM6 2916 5 178351489 NM_000843 NP_000834 A/T I236F minus 28447205 914 HG_BONN_CNS_SNPS EURO96 European 176 0.03 123 by freq 5q35 "glutamate receptor, metabotropic 6" 37309 rs17078898 GRM6 2916 5 178351515 NM_000843 NP_000834 A/T E227V minus 28447204 914 HG_BONN_CNS_SNPS EURO96 European 176 0.01 123 by freq 5q35 "glutamate receptor, metabotropic 6" 37310 rs17078944 LRRC2 79442 3 46555595 NM_024512 NP_078788 G/T A145E plus 23905262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 3p21.31 leucine rich repeat containing 2 37311 rs17078944 LRRC2 79442 3 46555595 NM_024512 NP_078788 G/T A145E plus 23905262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 3p21.31 leucine rich repeat containing 2 37312 rs17078944 LRRC2 79442 3 46555595 NM_024512 NP_078788 G/T A145E plus 23905262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 3p21.31 leucine rich repeat containing 2 37313 rs17078944 LRRC2 79442 3 46555595 NM_024750 NP_079026 G/T A145E plus 23905262 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 3p21.31 leucine rich repeat containing 2 37314 rs17078944 LRRC2 79442 3 46555595 NM_024750 NP_079026 G/T A145E plus 23905262 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 3p21.31 leucine rich repeat containing 2 37315 rs17078944 LRRC2 79442 3 46555595 NM_024750 NP_079026 G/T A145E plus 23905262 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 3p21.31 leucine rich repeat containing 2 37316 rs17080147 SLITRK6 84189 13 85267404 NM_032229 NP_115605 C/T Q414R plus 23741129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q31.1 "SLIT and NTRK-like family, member 6" 37317 rs17080147 SLITRK6 84189 13 85267404 NM_032229 NP_115605 C/T Q414R plus 23741129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.35 123 by freq 13q31.1 "SLIT and NTRK-like family, member 6" 37318 rs17080147 SLITRK6 84189 13 85267404 NM_032229 NP_115605 C/T Q414R plus 23741129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q31.1 "SLIT and NTRK-like family, member 6" 37319 rs17080346 GMCL1L 64396 5 177546743 NM_022471 NP_071916 C/T S55N plus 23945125 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 by freq 5q35.3 germ cell-less homolog 1 (Drosophila)-like 37320 rs17080346 GMCL1L 64396 5 177546743 NM_022471 NP_071916 C/T S55N plus 23945125 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.03 123 by freq 5q35.3 germ cell-less homolog 1 (Drosophila)-like 37321 rs17080346 GMCL1L 64396 5 177546743 NM_022471 NP_071916 C/T S55N plus 23945125 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.25 123 by freq 5q35.3 germ cell-less homolog 1 (Drosophila)-like 37322 rs17080381 PLEKHG1 57480 6 151244721 XM_027307 XP_027307 A/G Q787R plus 23427909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37323 rs17080381 PLEKHG1 57480 6 151244721 XM_027307 XP_027307 A/G Q787R plus 23427909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37324 rs17080381 PLEKHG1 57480 6 151244721 XM_027307 XP_027307 A/G Q787R plus 23427909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37325 rs17080410 PLEKHG1 57480 6 151253200 XM_027307 XP_027307 C/T V1071A plus 23428071 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37326 rs17080410 PLEKHG1 57480 6 151253200 XM_027307 XP_027307 C/T V1071A plus 23428071 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37327 rs17080410 PLEKHG1 57480 6 151253200 XM_027307 XP_027307 C/T V1071A plus 23428071 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25.1 "pleckstrin homology domain containing, family G (with RhoGef domain) member 1" 37328 rs17081389 CENPJ 55835 13 24385001 NM_018451 NP_060921 C/G P55A plus 23438879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q12.13 centromere protein J 37329 rs17081389 CENPJ 55835 13 24385001 NM_018451 NP_060921 C/G P55A plus 23438879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 13q12.13 centromere protein J 37330 rs17081389 CENPJ 55835 13 24385001 NM_018451 NP_060921 C/G P55A plus 23438879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.13 centromere protein J 37331 rs17082206 RTTN 25914 18 66014824 NM_173630 NP_775901 C/T K245R plus 23528218 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 18q22.2 rotatin 37332 rs17082206 RTTN 25914 18 66014824 NM_173630 NP_775901 C/T K245R plus 23528218 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 18q22.2 rotatin 37333 rs17082206 RTTN 25914 18 66014824 NM_173630 NP_775901 C/T K245R plus 23528218 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q22.2 rotatin 37334 rs17082236 SYNE1 23345 6 152562866 NM_015293 NP_056108 A/C A2692S plus 23408452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37335 rs17082236 SYNE1 23345 6 152562866 NM_015293 NP_056108 A/C A2692S plus 23408452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37336 rs17082236 SYNE1 23345 6 152562866 NM_015293 NP_056108 A/C A2692S plus 23408452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37337 rs17082236 SYNE1 23345 6 152562866 NM_033071 NP_149062 A/C A8097S plus 23408452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37338 rs17082236 SYNE1 23345 6 152562866 NM_033071 NP_149062 A/C A8097S plus 23408452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37339 rs17082236 SYNE1 23345 6 152562866 NM_033071 NP_149062 A/C A8097S plus 23408452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37340 rs17082236 SYNE1 23345 6 152562866 NM_133650 NP_598411 A/C A330S plus 23408452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37341 rs17082236 SYNE1 23345 6 152562866 NM_133650 NP_598411 A/C A330S plus 23408452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37342 rs17082236 SYNE1 23345 6 152562866 NM_133650 NP_598411 A/C A330S plus 23408452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37343 rs17082236 SYNE1 23345 6 152562866 NM_182961 NP_892006 A/C A8168S plus 23408452 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37344 rs17082236 SYNE1 23345 6 152562866 NM_182961 NP_892006 A/C A8168S plus 23408452 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.37 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37345 rs17082236 SYNE1 23345 6 152562866 NM_182961 NP_892006 A/C A8168S plus 23408452 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37346 rs17082709 SYNE1 23345 6 152869209 NM_033071 NP_149062 A/C L892V plus 23432603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37347 rs17082709 SYNE1 23345 6 152869209 NM_033071 NP_149062 A/C L892V plus 23432603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37348 rs17082709 SYNE1 23345 6 152869209 NM_033071 NP_149062 A/C L892V plus 23432603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37349 rs17082709 SYNE1 23345 6 152869209 NM_182961 NP_892006 A/C L885V plus 23432603 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37350 rs17082709 SYNE1 23345 6 152869209 NM_182961 NP_892006 A/C L885V plus 23432603 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37351 rs17082709 SYNE1 23345 6 152869209 NM_182961 NP_892006 A/C L885V plus 23432603 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q25 "spectrin repeat containing, nuclear envelope 1" 37352 rs17083436 RNF6 6049 13 25686151 NM_005977 NP_005968 C/T S623N plus 23446217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37353 rs17083436 RNF6 6049 13 25686151 NM_005977 NP_005968 C/T S623N plus 23446217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37354 rs17083436 RNF6 6049 13 25686151 NM_005977 NP_005968 C/T S623N plus 23446217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37355 rs17083436 RNF6 6049 13 25686151 NM_183043 NP_898864 C/T S623N plus 23446217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37356 rs17083436 RNF6 6049 13 25686151 NM_183043 NP_898864 C/T S623N plus 23446217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37357 rs17083436 RNF6 6049 13 25686151 NM_183043 NP_898864 C/T S623N plus 23446217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37358 rs17083436 RNF6 6049 13 25686151 NM_183044 NP_898865 C/T S623N plus 23446217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37359 rs17083436 RNF6 6049 13 25686151 NM_183044 NP_898865 C/T S623N plus 23446217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37360 rs17083436 RNF6 6049 13 25686151 NM_183044 NP_898865 C/T S623N plus 23446217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.2 ring finger protein (C3H2C3 type) 6 37361 rs17084492 WASF3 10810 13 26155004 NM_006646 NP_006637 C/T S415L plus 23451566 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 13q12 "WAS protein family, member 3" 37362 rs17084492 WASF3 10810 13 26155004 NM_006646 NP_006637 C/T S415L plus 23451566 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 13q12 "WAS protein family, member 3" 37363 rs17084492 WASF3 10810 13 26155004 NM_006646 NP_006637 C/T S415L plus 23451566 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 13q12 "WAS protein family, member 3" 37364 rs17085193 FIS 202299 5 95220349 NM_175616 NP_783315 G/T E54X plus 24000345 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 5q15 FIS 37365 rs17085193 FIS 202299 5 95220349 NM_175616 NP_783315 G/T E54X plus 24000345 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 5q15 FIS 37366 rs17085193 FIS 202299 5 95220349 NM_175616 NP_783315 G/T E54X plus 24000345 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 5q15 FIS 37367 rs17086286 NETO1 81832 18 68568358 NM_138966 NP_620416 C/G A487G plus 23556275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37368 rs17086286 NETO1 81832 18 68568358 NM_138966 NP_620416 C/G A487G plus 23556275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37369 rs17086286 NETO1 81832 18 68568358 NM_138966 NP_620416 C/G A487G plus 23556275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37370 rs17086286 NETO1 81832 18 68568358 NM_153181 NP_694821 C/G A486G plus 23556275 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37371 rs17086286 NETO1 81832 18 68568358 NM_153181 NP_694821 C/G A486G plus 23556275 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37372 rs17086286 NETO1 81832 18 68568358 NM_153181 NP_694821 C/G A486G plus 23556275 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q22-q23 neuropilin (NRP) and tolloid (TLL)-like 1 37373 rs17088980 TNFRSF10A 8797 8 23112849 NM_003844 NP_003835 G/T N297H plus 23497367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37374 rs17088980 TNFRSF10A 8797 8 23112849 NM_003844 NP_003835 G/T N297H plus 23497367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37375 rs17088980 TNFRSF10A 8797 8 23112849 NM_003844 NP_003835 G/T N297H plus 23497367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37376 rs17088993 TNFRSF10A 8797 8 23114165 NM_003844 NP_003835 A/C E228A minus 24491967 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37377 rs17088993 TNFRSF10A 8797 8 23114165 NM_003844 NP_003835 A/C E228A minus 24491967 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37378 rs17088993 TNFRSF10A 8797 8 23114165 NM_003844 NP_003835 A/C E228A minus 24491967 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37379 rs17088993 TNFRSF10A 8797 8 23114165 NM_003844 NP_003835 A/C E228A minus 24811028 1303 SEQUENOM CEPH CEPH (92) 184 0.24 123 by freq 8p21 "tumor necrosis factor receptor superfamily, member 10a" 37380 rs17090763 ZNF341 84905 20 31842856 NM_032819 NP_116208 A/C T806P plus 23564608 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 20q11.22 zinc finger protein 341 37381 rs17090763 ZNF341 84905 20 31842856 NM_032819 NP_116208 A/C T806P plus 23564608 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 20q11.22 zinc finger protein 341 37382 rs17090763 ZNF341 84905 20 31842856 NM_032819 NP_116208 A/C T806P plus 23564608 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.22 zinc finger protein 341 37383 rs17090972 SERPINA12 145264 14 94034064 NM_173850 NP_776249 G/T Q142K plus 23648466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12" 37384 rs17090972 SERPINA12 145264 14 94034064 NM_173850 NP_776249 G/T Q142K plus 23648466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12" 37385 rs17090972 SERPINA12 145264 14 94034064 NM_173850 NP_776249 G/T Q142K plus 23648466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12" 37386 rs17092079 NCOA6 23054 20 32798322 NM_014071 NP_054790 C/T N955S plus 23562187 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11 nuclear receptor coactivator 6 37387 rs17092079 NCOA6 23054 20 32798322 NM_014071 NP_054790 C/T N955S plus 23562187 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 20q11 nuclear receptor coactivator 6 37388 rs17092079 NCOA6 23054 20 32798322 NM_014071 NP_054790 C/T N955S plus 23562187 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11 nuclear receptor coactivator 6 37389 rs17092104 SLC18A1 6570 8 20049834 NM_003053 NP_003044 C/G L392V minus 24649189 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 37390 rs17092104 SLC18A1 6570 8 20049834 NM_003053 NP_003044 C/G L392V minus 24649189 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 37391 rs17092104 SLC18A1 6570 8 20049834 NM_003053 NP_003044 C/G L392V minus 24649189 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 37392 rs17092104 SLC18A1 6570 8 20049834 NM_003053 NP_003044 C/G L392V minus 28447310 914 HG_BONN_CNS_SNPS EURO96 European 140 0.1 123 by freq 8p21.3 "solute carrier family 18 (vesicular monoamine), member 1" 37393 rs17092199 MYH7B 57644 20 33029551 XM_371398 XP_371398 A/C P70T plus 23563387 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.23 "myosin, heavy polypeptide 7B, cardiac muscle, beta" 37394 rs17092199 MYH7B 57644 20 33029551 XM_371398 XP_371398 A/C P70T plus 23563387 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 20q11.23 "myosin, heavy polypeptide 7B, cardiac muscle, beta" 37395 rs17092199 MYH7B 57644 20 33029551 XM_371398 XP_371398 A/C P70T plus 23563387 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.23 "myosin, heavy polypeptide 7B, cardiac muscle, beta" 37396 rs17092706 CEP2 11190 20 33547866 NM_007186 NP_009117 C/G Q1072E plus 23566985 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.22-q12 centrosomal protein 2 37397 rs17092706 CEP2 11190 20 33547866 NM_007186 NP_009117 C/G Q1072E plus 23566985 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20q11.22-q12 centrosomal protein 2 37398 rs17092706 CEP2 11190 20 33547866 NM_007186 NP_009117 C/G Q1072E plus 23566985 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.22-q12 centrosomal protein 2 37399 rs17092928 RBM12 10137 20 33704944 NM_006047 NP_006038 C/T N572S plus 23568079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.21 RNA binding motif protein 12 37400 rs17092928 RBM12 10137 20 33704944 NM_006047 NP_006038 C/T N572S plus 23568079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20q11.21 RNA binding motif protein 12 37401 rs17092928 RBM12 10137 20 33704944 NM_006047 NP_006038 C/T N572S plus 23568079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.21 RNA binding motif protein 12 37402 rs17092928 RBM12 10137 20 33704944 NM_152838 NP_690051 C/T N572S plus 23568079 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.21 RNA binding motif protein 12 37403 rs17092928 RBM12 10137 20 33704944 NM_152838 NP_690051 C/T N572S plus 23568079 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 20q11.21 RNA binding motif protein 12 37404 rs17092928 RBM12 10137 20 33704944 NM_152838 NP_690051 C/T N572S plus 23568079 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.21 RNA binding motif protein 12 37405 rs17093294 TCL1A 8115 14 95248441 NM_021966 NP_068801 C/T V56I plus 24134414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 14q32.1 T-cell leukemia/lymphoma 1A 37406 rs17093294 TCL1A 8115 14 95248441 NM_021966 NP_068801 C/T V56I plus 24134414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q32.1 T-cell leukemia/lymphoma 1A 37407 rs17093294 TCL1A 8115 14 95248441 NM_021966 NP_068801 C/T V56I plus 24134414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.17 123 by freq 14q32.1 T-cell leukemia/lymphoma 1A 37408 rs17093828 HCK 3055 20 30152907 NM_002110 NP_002101 A/C P502Q plus 23553096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 20q11-q12 hemopoietic cell kinase 37409 rs17093828 HCK 3055 20 30152907 NM_002110 NP_002101 A/C P502Q plus 23553096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 20q11-q12 hemopoietic cell kinase 37410 rs17093828 HCK 3055 20 30152907 NM_002110 NP_002101 A/C P502Q plus 23553096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 20q11-q12 hemopoietic cell kinase 37411 rs17094821 DACT1 51339 14 58182976 NM_016651 NP_057735 G/T S628A plus 23666746 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 37412 rs17094821 DACT1 51339 14 58182976 NM_016651 NP_057735 G/T S628A plus 23666746 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 37413 rs17094821 DACT1 51339 14 58182976 NM_016651 NP_057735 G/T S628A plus 23666746 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 37414 rs17095822 CRYZ 1429 1 74887886 NM_001889 NP_001880 C/T E183K plus 23195080 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p31-p22 "crystallin, zeta (quinone reductase)" 37415 rs17095822 CRYZ 1429 1 74887886 NM_001889 NP_001880 C/T E183K plus 23195080 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1p31-p22 "crystallin, zeta (quinone reductase)" 37416 rs17095822 CRYZ 1429 1 74887886 NM_001889 NP_001880 C/T E183K plus 23195080 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p31-p22 "crystallin, zeta (quinone reductase)" 37417 rs17096845 PCDHB2 56133 5 140456579 NM_018936 NP_061759 C/T L674P plus 24811373 1303 SEQUENOM CEPH CEPH (92) 184 0.08 123 by freq 5q31 protocadherin beta 2 37418 rs17096901 PCDHB5 26167 5 140495667 NM_015669 NP_056484 C/T I156T plus 23951172 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5q31 protocadherin beta 5 37419 rs17096901 PCDHB5 26167 5 140495667 NM_015669 NP_056484 C/T I156T plus 23951172 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q31 protocadherin beta 5 37420 rs17096901 PCDHB5 26167 5 140495667 NM_015669 NP_056484 C/T I156T plus 23951172 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 5q31 protocadherin beta 5 37421 rs17096946 PCDHB7 56129 5 140533159 NM_018940 NP_061763 A/G E187K plus 23675265 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 5q31 protocadherin beta 7 37422 rs17096946 PCDHB7 56129 5 140533159 NM_018940 NP_061763 A/G E187K plus 23675265 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.16 123 by freq 5q31 protocadherin beta 7 37423 rs17096946 PCDHB7 56129 5 140533159 NM_018940 NP_061763 A/G E187K plus 23675265 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 protocadherin beta 7 37424 rs17096954 PCDHB8 56128 5 140538494 NM_019120 NP_061993 A/G E232G plus 23951409 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 5q31 protocadherin beta 8 37425 rs17096954 PCDHB8 56128 5 140538494 NM_019120 NP_061993 A/G E232G plus 23951409 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 5q31 protocadherin beta 8 37426 rs17096954 PCDHB8 56128 5 140538494 NM_019120 NP_061993 A/G E232G plus 23951409 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.05 123 by freq 5q31 protocadherin beta 8 37427 rs17096961 PCDHB8 56128 5 140540033 NM_019120 NP_061993 A/G S745N plus 23351136 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 5q31 protocadherin beta 8 37428 rs17096961 PCDHB8 56128 5 140540033 NM_019120 NP_061993 A/G S745N plus 23351136 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.3 123 by freq 5q31 protocadherin beta 8 37429 rs17096961 PCDHB8 56128 5 140540033 NM_019120 NP_061993 A/G S745N plus 23351136 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5q31 protocadherin beta 8 37430 rs17097231 PCDHGB2 56103 5 140719963 NM_018923 NP_061746 C/G P26R plus 23740736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37431 rs17097231 PCDHGB2 56103 5 140719963 NM_018923 NP_061746 C/G P26R plus 23740736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37432 rs17097231 PCDHGB2 56103 5 140719963 NM_018923 NP_061746 C/G P26R plus 23740736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37433 rs17097231 PCDHGB2 56103 5 140719963 NM_032096 NP_115267 C/G P26R plus 23740736 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37434 rs17097231 PCDHGB2 56103 5 140719963 NM_032096 NP_115267 C/G P26R plus 23740736 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.17 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37435 rs17097231 PCDHGB2 56103 5 140719963 NM_032096 NP_115267 C/G P26R plus 23740736 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 5q31 "protocadherin gamma subfamily B, 2" 37436 rs17097251 PCDHGA7 56108 5 140743366 NM_018920 NP_061743 C/T T239M plus 23740809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37437 rs17097251 PCDHGA7 56108 5 140743366 NM_018920 NP_061743 C/T T239M plus 23740809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37438 rs17097251 PCDHGA7 56108 5 140743366 NM_018920 NP_061743 C/T T239M plus 23740809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37439 rs17097251 PCDHGA7 56108 5 140743366 NM_032087 NP_114476 C/T T239M plus 23740809 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37440 rs17097251 PCDHGA7 56108 5 140743366 NM_032087 NP_114476 C/T T239M plus 23740809 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37441 rs17097251 PCDHGA7 56108 5 140743366 NM_032087 NP_114476 C/T T239M plus 23740809 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q31 "protocadherin gamma subfamily A, 7" 37442 rs17097468 COCH 1690 14 30428648 NM_004086 NP_004077 A/G E518G plus 23573469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 37443 rs17097468 COCH 1690 14 30428648 NM_004086 NP_004077 A/G E518G plus 23573469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 37444 rs17097468 COCH 1690 14 30428648 NM_004086 NP_004077 A/G E518G plus 23573469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q12-q13 "coagulation factor C homolog, cochlin (Limulus polyphemus)" 37445 rs17098707 GRK5 2869 10 121076087 NM_005308 NP_005299 A/T Q41L plus 23617347 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 10q24-qter G protein-coupled receptor kinase 5 37446 rs17098707 GRK5 2869 10 121076087 NM_005308 NP_005299 A/T Q41L plus 23617347 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 10q24-qter G protein-coupled receptor kinase 5 37447 rs17098707 GRK5 2869 10 121076087 NM_005308 NP_005299 A/T Q41L plus 23617347 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q24-qter G protein-coupled receptor kinase 5 37448 rs17099240 AKAP6 9472 14 32084833 NM_004274 NP_004265 A/G N408S plus 23583479 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 37449 rs17099240 AKAP6 9472 14 32084833 NM_004274 NP_004265 A/G N408S plus 23583479 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 37450 rs17099240 AKAP6 9472 14 32084833 NM_004274 NP_004265 A/G N408S plus 23583479 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 14q13.1 A kinase (PRKA) anchor protein 6 37451 rs17099370 SYT14L 83851 14 61532882 NM_031914 NP_114120 G/T R131L plus 24128081 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 14q23.1-q23.2 synaptotagmin XIV-like 37452 rs17099370 SYT14L 83851 14 61532882 NM_031914 NP_114120 G/T R131L plus 24128081 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q23.1-q23.2 synaptotagmin XIV-like 37453 rs17099370 SYT14L 83851 14 61532882 NM_031914 NP_114120 G/T R131L plus 24128081 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.44 123 by freq 14q23.1-q23.2 synaptotagmin XIV-like 37454 rs17099450 MMP8 4317 11 102100789 NM_002424 NP_002415 C/G S3C plus 23555864 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 37455 rs17099450 MMP8 4317 11 102100789 NM_002424 NP_002415 C/G S3C plus 23555864 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 37456 rs17099450 MMP8 4317 11 102100789 NM_002424 NP_002415 C/G S3C plus 23555864 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 11q22.3 matrix metalloproteinase 8 (neutrophil collagenase) 37457 rs17099455 DHRS4 10901 14 23492847 NM_021004 NP_066284 A/G A4T plus 23799140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 14q11.2 dehydrogenase/reductase (SDR family) member 4 37458 rs17099455 DHRS4 10901 14 23492847 NM_021004 NP_066284 A/G A4T plus 23799140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 14q11.2 dehydrogenase/reductase (SDR family) member 4 37459 rs17099455 DHRS4 10901 14 23492847 NM_021004 NP_066284 A/G A4T plus 23799140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 14q11.2 dehydrogenase/reductase (SDR family) member 4 37460 rs17099969 DNCH2 79659 11 102497317 XM_370652 XP_370652 A/G R456Q plus 23559367 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 37461 rs17099969 DNCH2 79659 11 102497317 XM_370652 XP_370652 A/G R456Q plus 23559367 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 37462 rs17099969 DNCH2 79659 11 102497317 XM_370652 XP_370652 A/G R456Q plus 23559367 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 37463 rs17100686 ANXA11 311 10 81917039 NM_001157 NP_001148 C/T R191Q plus 23617421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 10q23 annexin A11 37464 rs17100686 ANXA11 311 10 81917039 NM_001157 NP_001148 C/T R191Q plus 23617421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 10q23 annexin A11 37465 rs17100686 ANXA11 311 10 81917039 NM_001157 NP_001148 C/T R191Q plus 23617421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 10q23 annexin A11 37466 rs17100686 ANXA11 311 10 81917039 NM_145868 NP_665875 C/T R191Q plus 23617421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 10q23 annexin A11 37467 rs17100686 ANXA11 311 10 81917039 NM_145868 NP_665875 C/T R191Q plus 23617421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 10q23 annexin A11 37468 rs17100686 ANXA11 311 10 81917039 NM_145868 NP_665875 C/T R191Q plus 23617421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 10q23 annexin A11 37469 rs17100686 ANXA11 311 10 81917039 NM_145869 NP_665876 C/T R191Q plus 23617421 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 10q23 annexin A11 37470 rs17100686 ANXA11 311 10 81917039 NM_145869 NP_665876 C/T R191Q plus 23617421 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 10q23 annexin A11 37471 rs17100686 ANXA11 311 10 81917039 NM_145869 NP_665876 C/T R191Q plus 23617421 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 10q23 annexin A11 37472 rs17101180 GIPC2 54810 1 78223981 NM_017655 NP_060125 C/T S61F plus 23839986 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 1p31.1 PDZ domain protein GIPC2 37473 rs17101180 GIPC2 54810 1 78223981 NM_017655 NP_060125 C/T S61F plus 23839986 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1p31.1 PDZ domain protein GIPC2 37474 rs17101180 GIPC2 54810 1 78223981 NM_017655 NP_060125 C/T S61F plus 23839986 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 by freq 1p31.1 PDZ domain protein GIPC2 37475 rs17101193 NRG3 10718 10 84734906 XM_166086 XP_166086 A/C N226K plus 23635317 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 10q22-q23 neuregulin 3 37476 rs17101193 NRG3 10718 10 84734906 XM_166086 XP_166086 A/C N226K plus 23635317 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 10q22-q23 neuregulin 3 37477 rs17101193 NRG3 10718 10 84734906 XM_166086 XP_166086 A/C N226K plus 23635317 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 10q22-q23 neuregulin 3 37478 rs17101262 PCK2 5106 14 23639244 NM_004563 NP_004554 A/G G406S plus 23799150 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 37479 rs17101262 PCK2 5106 14 23639244 NM_004563 NP_004554 A/G G406S plus 23799150 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q11.2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 37480 rs17101262 PCK2 5106 14 23639244 NM_004563 NP_004554 A/G G406S plus 23799150 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 37481 rs17101661 SYNE2 23224 14 63634433 NM_015180 NP_055995 A/G R4040H plus 23793523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37482 rs17101661 SYNE2 23224 14 63634433 NM_015180 NP_055995 A/G R4040H plus 23793523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37483 rs17101661 SYNE2 23224 14 63634433 NM_015180 NP_055995 A/G R4040H plus 23793523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37484 rs17101661 SYNE2 23224 14 63634433 NM_182914 NP_878918 A/G R426H plus 23793523 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37485 rs17101661 SYNE2 23224 14 63634433 NM_182914 NP_878918 A/G R426H plus 23793523 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37486 rs17101661 SYNE2 23224 14 63634433 NM_182914 NP_878918 A/G R426H plus 23793523 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 37487 rs17102042 OR5AU1 390445 14 20693787 XM_372509 XP_372509 C/T V80M plus 23815046 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 37488 rs17102042 OR5AU1 390445 14 20693787 XM_372509 XP_372509 C/T V80M plus 23815046 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 37489 rs17102042 OR5AU1 390445 14 20693787 XM_372509 XP_372509 C/T V80M plus 23815046 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 "olfactory receptor, family 5, subfamily AU, member 1" 37490 rs17102311 TINF2 26277 14 23779805 NM_012461 NP_036593 A/G P241S plus 23799194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37491 rs17102311 TINF2 26277 14 23779805 NM_012461 NP_036593 A/G P241S plus 23799194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37492 rs17102311 TINF2 26277 14 23779805 NM_012461 NP_036593 A/G P241S plus 23799194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37493 rs17102313 TINF2 26277 14 23779816 NM_012461 NP_036593 C/T G237D plus 23799195 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37494 rs17102313 TINF2 26277 14 23779816 NM_012461 NP_036593 C/T G237D plus 23799195 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.11 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37495 rs17102313 TINF2 26277 14 23779816 NM_012461 NP_036593 C/T G237D plus 23799195 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 14q11.2 TERF1 (TRF1)-interacting nuclear factor 2 37496 rs17102531 GRIP1 23426 12 65143049 XM_290559 XP_290559 C/T A322T plus 23794379 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q14.2 glutamate receptor interacting protein 1 37497 rs17102531 GRIP1 23426 12 65143049 XM_290559 XP_290559 C/T A322T plus 23794379 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 12q14.2 glutamate receptor interacting protein 1 37498 rs17102531 GRIP1 23426 12 65143049 XM_290559 XP_290559 C/T A322T plus 23794379 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q14.2 glutamate receptor interacting protein 1 37499 rs17102592 CYP4B1 1580 1 46992947 NM_000779 NP_000770 G/T F354C plus 23160500 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 37500 rs17102592 CYP4B1 1580 1 46992947 NM_000779 NP_000770 G/T F354C plus 23160500 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 37501 rs17102592 CYP4B1 1580 1 46992947 NM_000779 NP_000770 G/T F354C plus 23160500 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p34-p12 "cytochrome P450, family 4, subfamily B, polypeptide 1" 37502 rs17102750 BAZ1A 11177 14 34339277 NM_013448 NP_038476 A/T D344E minus 24815337 1303 SEQUENOM CEPH CEPH (92) 184 0.29 123 by freq 14q12-q13 "bromodomain adjacent to zinc finger domain, 1A" 37503 rs17102750 BAZ1A 11177 14 34339277 NM_013448 NP_038476 A/T D344E minus 24817935 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 by freq 14q12-q13 "bromodomain adjacent to zinc finger domain, 1A" 37504 rs17102750 BAZ1A 11177 14 34339277 NM_182648 NP_872589 A/T D344E minus 24815337 1303 SEQUENOM CEPH CEPH (92) 184 0.29 123 by freq 14q12-q13 "bromodomain adjacent to zinc finger domain, 1A" 37505 rs17102750 BAZ1A 11177 14 34339277 NM_182648 NP_872589 A/T D344E minus 24817935 1303 SEQUENOM CEPH CEPH (92) 184 0.22 123 by freq 14q12-q13 "bromodomain adjacent to zinc finger domain, 1A" 37506 rs17102999 MLH3 27030 14 74583287 NM_014381 NP_055196 A/G T942I plus 24133996 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q24.3 mutL homolog 3 (E. coli) 37507 rs17102999 MLH3 27030 14 74583287 NM_014381 NP_055196 A/G T942I plus 24133996 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q24.3 mutL homolog 3 (E. coli) 37508 rs17102999 MLH3 27030 14 74583287 NM_014381 NP_055196 A/G T942I plus 24133996 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 14q24.3 mutL homolog 3 (E. coli) 37509 rs17103671 RPGRIP1 57096 14 20881036 NM_020366 NP_065099 A/G D1114G plus 23798176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 37510 rs17103671 RPGRIP1 57096 14 20881036 NM_020366 NP_065099 A/G D1114G plus 23798176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 37511 rs17103671 RPGRIP1 57096 14 20881036 NM_020366 NP_065099 A/G D1114G plus 23798176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11 retinitis pigmentosa GTPase regulator interacting protein 1 37512 rs17104428 PLEKHH1 57475 14 67105656 XM_375087 XP_375087 A/G M627V plus 23795811 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 37513 rs17104428 PLEKHH1 57475 14 67105656 XM_375087 XP_375087 A/G M627V plus 23795811 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 37514 rs17104428 PLEKHH1 57475 14 67105656 XM_375087 XP_375087 A/G M627V plus 23795811 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.1 "pleckstrin homology domain containing, family H (with MyTH4 domain) member 1" 37515 rs17104534 ARG2 384 14 67183491 NM_001172 NP_001163 C/G G240R plus 23795924 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q24.1-q24.3 "arginase, type II" 37516 rs17104534 ARG2 384 14 67183491 NM_001172 NP_001163 C/G G240R plus 23795924 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 14q24.1-q24.3 "arginase, type II" 37517 rs17104534 ARG2 384 14 67183491 NM_001172 NP_001163 C/G G240R plus 23795924 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.1-q24.3 "arginase, type II" 37518 rs17104742 GPR151 134391 5 145875751 NM_194251 NP_919227 A/G P27L plus 23316251 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q32 G protein-coupled receptor 151 37519 rs17104742 GPR151 134391 5 145875751 NM_194251 NP_919227 A/G P27L plus 23316251 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5q32 G protein-coupled receptor 151 37520 rs17104742 GPR151 134391 5 145875751 NM_194251 NP_919227 A/G P27L plus 23316251 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q32 G protein-coupled receptor 151 37521 rs17104991 SLC25A21 89874 14 36219617 NM_030631 NP_085134 A/C W299C plus 23651965 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 "solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21" 37522 rs17104991 SLC25A21 89874 14 36219617 NM_030631 NP_085134 A/C W299C plus 23651965 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 14q11.2 "solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21" 37523 rs17104991 SLC25A21 89874 14 36219617 NM_030631 NP_085134 A/C W299C plus 23651965 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 "solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21" 37524 rs17106351 OR11H6 122748 14 19762145 XM_063315 XP_063315 A/G R146H plus 23814882 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 37525 rs17106351 OR11H6 122748 14 19762145 XM_063315 XP_063315 A/G R146H plus 23814882 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 37526 rs17106351 OR11H6 122748 14 19762145 XM_063315 XP_063315 A/G R146H plus 23814882 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 37527 rs17106411 RAB2B 84932 14 20999211 NM_032846 NP_116235 G/T N212T plus 23798214 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 "RAB2B, member RAS oncogene family" 37528 rs17106411 RAB2B 84932 14 20999211 NM_032846 NP_116235 G/T N212T plus 23798214 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q11.2 "RAB2B, member RAS oncogene family" 37529 rs17106411 RAB2B 84932 14 20999211 NM_032846 NP_116235 G/T N212T plus 23798214 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 "RAB2B, member RAS oncogene family" 37530 rs17106909 CWF19L2 143884 11 106792153 NM_152434 NP_689647 C/T G383R plus 24109723 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 37531 rs17106909 CWF19L2 143884 11 106792153 NM_152434 NP_689647 C/T G383R plus 24109723 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 37532 rs17106909 CWF19L2 143884 11 106792153 NM_152434 NP_689647 C/T G383R plus 24109723 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 11q23.1 "CWF19-like 2, cell cycle control (S. pombe)" 37533 rs17107176 TTC6 115669 14 37366248 XM_056434 XP_056434 A/T T376S plus 23653040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 tetratricopeptide repeat domain 6 37534 rs17107176 TTC6 115669 14 37366248 XM_056434 XP_056434 A/T T376S plus 23653040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 14q13.3 tetratricopeptide repeat domain 6 37535 rs17107176 TTC6 115669 14 37366248 XM_056434 XP_056434 A/T T376S plus 23653040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 14q13.3 tetratricopeptide repeat domain 6 37536 rs17107198 ORC1L 4998 1 52563629 NM_004153 NP_004144 A/G T466M plus 24134674 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37537 rs17107198 ORC1L 4998 1 52563629 NM_004153 NP_004144 A/G T466M plus 24134674 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37538 rs17107198 ORC1L 4998 1 52563629 NM_004153 NP_004144 A/G T466M plus 24134674 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37539 rs17107203 ORC1L 4998 1 52573892 NM_004153 NP_004144 C/T V190M plus 23655512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37540 rs17107203 ORC1L 4998 1 52573892 NM_004153 NP_004144 C/T V190M plus 23655512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37541 rs17107203 ORC1L 4998 1 52573892 NM_004153 NP_004144 C/T V190M plus 23655512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1p32 "origin recognition complex, subunit 1-like (yeast)" 37542 rs17107368 SH2D4B 387694 10 82359199 NM_207372 NP_997255 A/T D299E plus 24112856 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.2 123 by freq 10q23.1 SH2 domain containing 4B 37543 rs17107368 SH2D4B 387694 10 82359199 NM_207372 NP_997255 A/T D299E plus 24112856 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 10q23.1 SH2 domain containing 4B 37544 rs17107368 SH2D4B 387694 10 82359199 NM_207372 NP_997255 A/T D299E plus 24112856 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.35 123 by freq 10q23.1 SH2 domain containing 4B 37545 rs17108112 SLAC2-B 23086 11 107888748 NM_015065 NP_055880 A/G V899A plus 23619567 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q23.1 SLAC2-B 37546 rs17108112 SLAC2-B 23086 11 107888748 NM_015065 NP_055880 A/G V899A plus 23619567 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 11q23.1 SLAC2-B 37547 rs17108112 SLAC2-B 23086 11 107888748 NM_015065 NP_055880 A/G V899A plus 23619567 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q23.1 SLAC2-B 37548 rs17108127 SLAC2-B 23086 11 107889910 NM_015065 NP_055880 A/T M512L plus 23619615 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q23.1 SLAC2-B 37549 rs17108127 SLAC2-B 23086 11 107889910 NM_015065 NP_055880 A/T M512L plus 23619615 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 11q23.1 SLAC2-B 37550 rs17108127 SLAC2-B 23086 11 107889910 NM_015065 NP_055880 A/T M512L plus 23619615 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q23.1 SLAC2-B 37551 rs17108378 ZFYVE27 118813 10 99492887 NM_144588 NP_653189 A/G V14I plus 24091302 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24.2 "zinc finger, FYVE domain containing 27" 37552 rs17108378 ZFYVE27 118813 10 99492887 NM_144588 NP_653189 A/G V14I plus 24091302 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 10q24.2 "zinc finger, FYVE domain containing 27" 37553 rs17108378 ZFYVE27 118813 10 99492887 NM_144588 NP_653189 A/G V14I plus 24091302 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.07 123 by freq 10q24.2 "zinc finger, FYVE domain containing 27" 37554 rs17109109 MGEA6 4253 14 38847473 NM_005930 NP_005921 A/G N375S plus 23620314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37555 rs17109109 MGEA6 4253 14 38847473 NM_005930 NP_005921 A/G N375S plus 23620314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37556 rs17109109 MGEA6 4253 14 38847473 NM_005930 NP_005921 A/G N375S plus 23620314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37557 rs17109109 MGEA6 4253 14 38847473 NM_203354 NP_976229 A/G N363S plus 23620314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37558 rs17109109 MGEA6 4253 14 38847473 NM_203354 NP_976229 A/G N363S plus 23620314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37559 rs17109109 MGEA6 4253 14 38847473 NM_203354 NP_976229 A/G N363S plus 23620314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37560 rs17109109 MGEA6 4253 14 38847473 NM_203355 NP_976230 A/G N375S plus 23620314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37561 rs17109109 MGEA6 4253 14 38847473 NM_203355 NP_976230 A/G N375S plus 23620314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37562 rs17109109 MGEA6 4253 14 38847473 NM_203355 NP_976230 A/G N375S plus 23620314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37563 rs17109109 MGEA6 4253 14 38847473 NM_203356 NP_976231 A/G N346S plus 23620314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37564 rs17109109 MGEA6 4253 14 38847473 NM_203356 NP_976231 A/G N346S plus 23620314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37565 rs17109109 MGEA6 4253 14 38847473 NM_203356 NP_976231 A/G N346S plus 23620314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37566 rs17109109 MGEA6 4253 14 38847473 NM_203357 NP_976232 A/G N300S plus 23620314 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37567 rs17109109 MGEA6 4253 14 38847473 NM_203357 NP_976232 A/G N300S plus 23620314 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37568 rs17109109 MGEA6 4253 14 38847473 NM_203357 NP_976232 A/G N300S plus 23620314 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 meningioma expressed antigen 6 (coiled-coil proline-rich) 37569 rs17109924 GPR49 8549 12 70264054 NM_003667 NP_003658 C/T V666A plus 23661065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 12q22-q23 G protein-coupled receptor 49 37570 rs17109924 GPR49 8549 12 70264054 NM_003667 NP_003658 C/T V666A plus 23661065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 12q22-q23 G protein-coupled receptor 49 37571 rs17109924 GPR49 8549 12 70264054 NM_003667 NP_003658 C/T V666A plus 23661065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12q22-q23 G protein-coupled receptor 49 37572 rs17110107 BCAR3 8412 1 93753615 NM_003567 NP_003558 C/G Q593H plus 24157247 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 by freq 1p22.1 breast cancer anti-estrogen resistance 3 37573 rs17110107 BCAR3 8412 1 93753615 NM_003567 NP_003558 C/G Q593H plus 24157247 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.08 123 by freq 1p22.1 breast cancer anti-estrogen resistance 3 37574 rs17110107 BCAR3 8412 1 93753615 NM_003567 NP_003558 C/G Q593H plus 24157247 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 36 0.17 123 by freq 1p22.1 breast cancer anti-estrogen resistance 3 37575 rs17110563 TPH2 121278 12 70652573 NM_173353 NP_775489 C/T P206S plus 28447407 914 HG_BONN_CNS_SNPS EURO96 European 94 0.02 123 by freq 12q15 tryptophan hydroxylase 2 37576 rs17110744 HPSE2 60495 10 100471417 NM_021828 NP_068600 C/T A315T plus 23591963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q23-q24 heparanase 2 37577 rs17110744 HPSE2 60495 10 100471417 NM_021828 NP_068600 C/T A315T plus 23591963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 10q23-q24 heparanase 2 37578 rs17110744 HPSE2 60495 10 100471417 NM_021828 NP_068600 C/T A315T plus 23591963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q23-q24 heparanase 2 37579 rs17110944 PDGFRB 5159 5 149495590 NM_002609 NP_002600 A/T I29F plus 23743097 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q31-q32 "platelet-derived growth factor receptor, beta polypeptide" 37580 rs17110944 PDGFRB 5159 5 149495590 NM_002609 NP_002600 A/T I29F plus 23743097 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 5q31-q32 "platelet-derived growth factor receptor, beta polypeptide" 37581 rs17110944 PDGFRB 5159 5 149495590 NM_002609 NP_002600 A/T I29F plus 23743097 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 5q31-q32 "platelet-derived growth factor receptor, beta polypeptide" 37582 rs17111188 TEP1 7011 14 19939545 NM_007110 NP_009041 A/C K434N plus 23814915 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q11.2 telomerase-associated protein 1 37583 rs17111188 TEP1 7011 14 19939545 NM_007110 NP_009041 A/C K434N plus 23814915 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 14q11.2 telomerase-associated protein 1 37584 rs17111188 TEP1 7011 14 19939545 NM_007110 NP_009041 A/C K434N plus 23814915 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 telomerase-associated protein 1 37585 rs17112076 PIK3AP1 118788 10 98459683 NM_152309 NP_689522 C/T E21K plus 24088419 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 by freq 10q24.2 phosphoinositide-3-kinase adaptor protein 1 37586 rs17112076 PIK3AP1 118788 10 98459683 NM_152309 NP_689522 C/T E21K plus 24088419 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 10q24.2 phosphoinositide-3-kinase adaptor protein 1 37587 rs17112076 PIK3AP1 118788 10 98459683 NM_152309 NP_689522 C/T E21K plus 24088419 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.25 123 by freq 10q24.2 phosphoinositide-3-kinase adaptor protein 1 37588 rs17112598 ARHGAP19 84986 10 99006078 NM_032900 NP_116289 C/T Q124R plus 24089823 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24.2 Rho GTPase activating protein 19 37589 rs17112598 ARHGAP19 84986 10 99006078 NM_032900 NP_116289 C/T Q124R plus 24089823 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q24.2 Rho GTPase activating protein 19 37590 rs17112598 ARHGAP19 84986 10 99006078 NM_032900 NP_116289 C/T Q124R plus 24089823 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 10q24.2 Rho GTPase activating protein 19 37591 rs17112809 MMS19L 64210 10 99215836 NM_022362 NP_071757 C/T V526I plus 23584239 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 37592 rs17112809 MMS19L 64210 10 99215836 NM_022362 NP_071757 C/T V526I plus 23584239 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 37593 rs17112809 MMS19L 64210 10 99215836 NM_022362 NP_071757 C/T V526I plus 23584239 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 10q24-q25 "MMS19-like (MET18 homolog, S. cerevisiae)" 37594 rs17112895 PKD2L1 9033 10 102047252 NM_016112 NP_057196 C/T R278Q plus 23491588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24 polycystic kidney disease 2-like 1 37595 rs17112895 PKD2L1 9033 10 102047252 NM_016112 NP_057196 C/T R278Q plus 23491588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 10q24 polycystic kidney disease 2-like 1 37596 rs17112895 PKD2L1 9033 10 102047252 NM_016112 NP_057196 C/T R278Q plus 23491588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q24 polycystic kidney disease 2-like 1 37597 rs17113157 SEC31L2 25956 10 102248912 NM_015490 NP_056305 G/T S527R plus 23492992 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 37598 rs17113157 SEC31L2 25956 10 102248912 NM_015490 NP_056305 G/T S527R plus 23492992 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 37599 rs17113157 SEC31L2 25956 10 102248912 NM_015490 NP_056305 G/T S527R plus 23492992 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 10q24.32 SEC31-like 2 (S. cerevisiae) 37600 rs17113412 ANKRD22 118932 10 90578399 NM_144590 NP_653191 C/T E73G plus 24082894 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q23.31-q23.32 ankyrin repeat domain 22 37601 rs17113412 ANKRD22 118932 10 90578399 NM_144590 NP_653191 C/T E73G plus 24082894 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q23.31-q23.32 ankyrin repeat domain 22 37602 rs17113412 ANKRD22 118932 10 90578399 NM_144590 NP_653191 C/T E73G plus 24082894 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 10q23.31-q23.32 ankyrin repeat domain 22 37603 rs17113607 BCDO2 83875 11 111576546 NM_031938 NP_114144 A/G G266E plus 23595104 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q22.3-q23.1 beta-carotene dioxygenase 2 37604 rs17113607 BCDO2 83875 11 111576546 NM_031938 NP_114144 A/G G266E plus 23595104 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11q22.3-q23.1 beta-carotene dioxygenase 2 37605 rs17113607 BCDO2 83875 11 111576546 NM_031938 NP_114144 A/G G266E plus 23595104 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q22.3-q23.1 beta-carotene dioxygenase 2 37606 rs17113613 PEO1 56652 10 102739059 NM_021830 NP_068602 A/G V368I plus 23494970 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 10q23.3-24.3 progressive external ophthalmoplegia 1 37607 rs17113613 PEO1 56652 10 102739059 NM_021830 NP_068602 A/G V368I plus 23494970 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 by freq 10q23.3-24.3 progressive external ophthalmoplegia 1 37608 rs17113613 PEO1 56652 10 102739059 NM_021830 NP_068602 A/G V368I plus 23494970 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 10q23.3-24.3 progressive external ophthalmoplegia 1 37609 rs17114388 PPRC1 23082 10 103889861 NM_015062 NP_055877 A/G S536G plus 24041448 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 10q24.32 "peroxisome proliferative activated receptor, gamma, coactivator-related 1" 37610 rs17114388 PPRC1 23082 10 103889861 NM_015062 NP_055877 A/G S536G plus 24041448 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q24.32 "peroxisome proliferative activated receptor, gamma, coactivator-related 1" 37611 rs17114388 PPRC1 23082 10 103889861 NM_015062 NP_055877 A/G S536G plus 24041448 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 10q24.32 "peroxisome proliferative activated receptor, gamma, coactivator-related 1" 37612 rs17114555 C8A 731 1 57085799 NM_000562 NP_000553 A/G D458N plus 23688570 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p32 "complement component 8, alpha polypeptide" 37613 rs17114555 C8A 731 1 57085799 NM_000562 NP_000553 A/G D458N plus 23688570 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 1p32 "complement component 8, alpha polypeptide" 37614 rs17114555 C8A 731 1 57085799 NM_000562 NP_000553 A/G D458N plus 23688570 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p32 "complement component 8, alpha polypeptide" 37615 rs17114930 UBASH3A 53347 21 42730671 NM_018961 NP_061834 C/G D466E plus 23652455 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 21q22.3 "ubiquitin associated and SH3 domain containing, A" 37616 rs17114930 UBASH3A 53347 21 42730671 NM_018961 NP_061834 C/G D466E plus 23652455 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 21q22.3 "ubiquitin associated and SH3 domain containing, A" 37617 rs17114930 UBASH3A 53347 21 42730671 NM_018961 NP_061834 C/G D466E plus 23652455 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.3 "ubiquitin associated and SH3 domain containing, A" 37618 rs17116056 ATP10A 57194 15 23520183 NM_024490 NP_077816 G/T S353Y plus 23748384 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 37619 rs17116056 ATP10A 57194 15 23520183 NM_024490 NP_077816 G/T S353Y plus 23748384 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 37620 rs17116056 ATP10A 57194 15 23520183 NM_024490 NP_077816 G/T S353Y plus 23748384 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 37621 rs17116138 HTR3B 9177 11 113308876 NM_006028 NP_006019 A/G V183I plus 23605414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 37622 rs17116138 HTR3B 9177 11 113308876 NM_006028 NP_006019 A/G V183I plus 23605414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 37623 rs17116138 HTR3B 9177 11 113308876 NM_006028 NP_006019 A/G V183I plus 23605414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q23.1 5-hydroxytryptamine (serotonin) receptor 3B 37624 rs17116350 COL17A1 1308 10 105783740 NM_000494 NP_000485 C/T D1370G plus 23511590 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37625 rs17116350 COL17A1 1308 10 105783740 NM_000494 NP_000485 C/T D1370G plus 23511590 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37626 rs17116350 COL17A1 1308 10 105783740 NM_000494 NP_000485 C/T D1370G plus 23511590 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37627 rs17116350 COL17A1 1308 10 105783740 NM_130778 NP_570134 C/T D1370G plus 23511590 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37628 rs17116350 COL17A1 1308 10 105783740 NM_130778 NP_570134 C/T D1370G plus 23511590 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.43 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37629 rs17116350 COL17A1 1308 10 105783740 NM_130778 NP_570134 C/T D1370G plus 23511590 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37630 rs17116471 COL17A1 1308 10 105830412 NM_000494 NP_000485 C/T T4A plus 24047887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37631 rs17116471 COL17A1 1308 10 105830412 NM_000494 NP_000485 C/T T4A plus 24047887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37632 rs17116471 COL17A1 1308 10 105830412 NM_000494 NP_000485 C/T T4A plus 24047887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37633 rs17116471 COL17A1 1308 10 105830412 NM_130778 NP_570134 C/T T4A plus 24047887 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37634 rs17116471 COL17A1 1308 10 105830412 NM_130778 NP_570134 C/T T4A plus 24047887 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37635 rs17116471 COL17A1 1308 10 105830412 NM_130778 NP_570134 C/T T4A plus 24047887 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 10q24.3 "collagen, type XVII, alpha 1" 37636 rs17117678 MPRP-1 115209 1 58711672 NM_145243 NP_660286 G/T I329L plus 23173035 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1p32.1 metalloprotease related protein 1 37637 rs17117678 MPRP-1 115209 1 58711672 NM_145243 NP_660286 G/T I329L plus 23173035 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 1p32.1 metalloprotease related protein 1 37638 rs17117678 MPRP-1 115209 1 58711672 NM_145243 NP_660286 G/T I329L plus 23173035 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1p32.1 metalloprotease related protein 1 37639 rs17117699 MPRP-1 115209 1 58714303 NM_145243 NP_660286 A/C F211C plus 23850685 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p32.1 metalloprotease related protein 1 37640 rs17117699 MPRP-1 115209 1 58714303 NM_145243 NP_660286 A/C F211C plus 23850685 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p32.1 metalloprotease related protein 1 37641 rs17117699 MPRP-1 115209 1 58714303 NM_145243 NP_660286 A/C F211C plus 23850685 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 1p32.1 metalloprotease related protein 1 37642 rs17117720 MPRP-1 115209 1 58716638 NM_145243 NP_660286 A/G P117L plus 23850734 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p32.1 metalloprotease related protein 1 37643 rs17117720 MPRP-1 115209 1 58716638 NM_145243 NP_660286 A/G P117L plus 23850734 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p32.1 metalloprotease related protein 1 37644 rs17117720 MPRP-1 115209 1 58716638 NM_145243 NP_660286 A/G P117L plus 23850734 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 1p32.1 metalloprotease related protein 1 37645 rs17118042 MMP19 4327 12 54517152 NM_002429 NP_002420 G/T P488T plus 23446478 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q14 matrix metalloproteinase 19 37646 rs17118042 MMP19 4327 12 54517152 NM_002429 NP_002420 G/T P488T plus 23446478 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q14 matrix metalloproteinase 19 37647 rs17118042 MMP19 4327 12 54517152 NM_002429 NP_002420 G/T P488T plus 23446478 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q14 matrix metalloproteinase 19 37648 rs17118042 MMP19 4327 12 54517152 NM_022792 NP_073629 G/T P202T plus 23446478 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q14 matrix metalloproteinase 19 37649 rs17118042 MMP19 4327 12 54517152 NM_022792 NP_073629 G/T P202T plus 23446478 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 12q14 matrix metalloproteinase 19 37650 rs17118042 MMP19 4327 12 54517152 NM_022792 NP_073629 G/T P202T plus 23446478 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q14 matrix metalloproteinase 19 37651 rs17118154 SILV 6490 12 54637244 NM_006928 NP_008859 C/G E370D plus 23446826 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 12q13-q14 silver homolog (mouse) 37652 rs17118154 SILV 6490 12 54637244 NM_006928 NP_008859 C/G E370D plus 23446826 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 12q13-q14 silver homolog (mouse) 37653 rs17118154 SILV 6490 12 54637244 NM_006928 NP_008859 C/G E370D plus 23446826 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13-q14 silver homolog (mouse) 37654 rs17118224 KRT1B 374454 12 51383458 NM_175078 NP_778253 C/T A10T plus 23361350 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 12q13.13 keratin 1B 37655 rs17118224 KRT1B 374454 12 51383458 NM_175078 NP_778253 C/T A10T plus 23361350 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 12q13.13 keratin 1B 37656 rs17118224 KRT1B 374454 12 51383458 NM_175078 NP_778253 C/T A10T plus 23361350 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.13 keratin 1B 37657 rs17119344 MYO1A 4640 12 55709201 NM_005379 NP_005370 A/G T996I plus 24012542 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12q13-q15 myosin IA 37658 rs17119344 MYO1A 4640 12 55709201 NM_005379 NP_005370 A/G T996I plus 24012542 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 12q13-q15 myosin IA 37659 rs17119344 MYO1A 4640 12 55709201 NM_005379 NP_005370 A/G T996I plus 24012542 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 12q13-q15 myosin IA 37660 rs17121403 AGL 178 1 100047998 NM_000028 NP_000019 A/G Q229R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37661 rs17121403 AGL 178 1 100047998 NM_000028 NP_000019 A/G Q229R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37662 rs17121403 AGL 178 1 100047998 NM_000028 NP_000019 A/G Q229R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37663 rs17121403 AGL 178 1 100047998 NM_000642 NP_000633 A/G Q229R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37664 rs17121403 AGL 178 1 100047998 NM_000642 NP_000633 A/G Q229R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37665 rs17121403 AGL 178 1 100047998 NM_000642 NP_000633 A/G Q229R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37666 rs17121403 AGL 178 1 100047998 NM_000643 NP_000634 A/G Q229R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37667 rs17121403 AGL 178 1 100047998 NM_000643 NP_000634 A/G Q229R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37668 rs17121403 AGL 178 1 100047998 NM_000643 NP_000634 A/G Q229R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37669 rs17121403 AGL 178 1 100047998 NM_000644 NP_000635 A/G Q229R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37670 rs17121403 AGL 178 1 100047998 NM_000644 NP_000635 A/G Q229R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37671 rs17121403 AGL 178 1 100047998 NM_000644 NP_000635 A/G Q229R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37672 rs17121403 AGL 178 1 100047998 NM_000645 NP_000636 A/G Q212R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37673 rs17121403 AGL 178 1 100047998 NM_000645 NP_000636 A/G Q212R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37674 rs17121403 AGL 178 1 100047998 NM_000645 NP_000636 A/G Q212R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37675 rs17121403 AGL 178 1 100047998 NM_000646 NP_000637 A/G Q213R plus 23160113 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37676 rs17121403 AGL 178 1 100047998 NM_000646 NP_000637 A/G Q213R plus 23160113 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37677 rs17121403 AGL 178 1 100047998 NM_000646 NP_000637 A/G Q213R plus 23160113 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37678 rs17121464 AGL 178 1 100052808 NM_000028 NP_000019 A/G R387Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37679 rs17121464 AGL 178 1 100052808 NM_000028 NP_000019 A/G R387Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37680 rs17121464 AGL 178 1 100052808 NM_000028 NP_000019 A/G R387Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37681 rs17121464 AGL 178 1 100052808 NM_000642 NP_000633 A/G R387Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37682 rs17121464 AGL 178 1 100052808 NM_000642 NP_000633 A/G R387Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37683 rs17121464 AGL 178 1 100052808 NM_000642 NP_000633 A/G R387Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37684 rs17121464 AGL 178 1 100052808 NM_000643 NP_000634 A/G R387Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37685 rs17121464 AGL 178 1 100052808 NM_000643 NP_000634 A/G R387Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37686 rs17121464 AGL 178 1 100052808 NM_000643 NP_000634 A/G R387Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37687 rs17121464 AGL 178 1 100052808 NM_000644 NP_000635 A/G R387Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37688 rs17121464 AGL 178 1 100052808 NM_000644 NP_000635 A/G R387Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37689 rs17121464 AGL 178 1 100052808 NM_000644 NP_000635 A/G R387Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37690 rs17121464 AGL 178 1 100052808 NM_000645 NP_000636 A/G R370Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37691 rs17121464 AGL 178 1 100052808 NM_000645 NP_000636 A/G R370Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37692 rs17121464 AGL 178 1 100052808 NM_000645 NP_000636 A/G R370Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37693 rs17121464 AGL 178 1 100052808 NM_000646 NP_000637 A/G R371Q plus 23843413 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37694 rs17121464 AGL 178 1 100052808 NM_000646 NP_000637 A/G R371Q plus 23843413 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37695 rs17121464 AGL 178 1 100052808 NM_000646 NP_000637 A/G R371Q plus 23843413 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 1p21 "amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III)" 37696 rs17121493 IL10RA 3587 11 117370056 NM_001558 NP_001549 A/G I224V plus 24101170 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11q23 "interleukin 10 receptor, alpha" 37697 rs17121493 IL10RA 3587 11 117370056 NM_001558 NP_001549 A/G I224V plus 24101170 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q23 "interleukin 10 receptor, alpha" 37698 rs17121493 IL10RA 3587 11 117370056 NM_001558 NP_001549 A/G I224V plus 24101170 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 11q23 "interleukin 10 receptor, alpha" 37699 rs17121605 PPIL5 122769 14 49143872 NM_152329 NP_689542 A/T I96N plus 23638534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 14q21.3 peptidylprolyl isomerase (cyclophilin) like 5 37700 rs17121605 PPIL5 122769 14 49143872 NM_152329 NP_689542 A/T I96N plus 23638534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 14q21.3 peptidylprolyl isomerase (cyclophilin) like 5 37701 rs17121605 PPIL5 122769 14 49143872 NM_152329 NP_689542 A/T I96N plus 23638534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q21.3 peptidylprolyl isomerase (cyclophilin) like 5 37702 rs17121745 NYD-SP29 126820 1 85301863 NM_145172 NP_660155 A/G T674A plus 23839440 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p22.3 testis development protein NYD-SP29 37703 rs17121745 NYD-SP29 126820 1 85301863 NM_145172 NP_660155 A/G T674A plus 23839440 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p22.3 testis development protein NYD-SP29 37704 rs17121745 NYD-SP29 126820 1 85301863 NM_145172 NP_660155 A/G T674A plus 23839440 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 1p22.3 testis development protein NYD-SP29 37705 rs17121881 AMICA 120425 11 117586555 NM_153206 NP_694938 A/T I84N plus 24102462 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 11q23.3 adhesion molecule AMICA 37706 rs17121881 AMICA 120425 11 117586555 NM_153206 NP_694938 A/T I84N plus 24102462 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 11q23.3 adhesion molecule AMICA 37707 rs17121881 AMICA 120425 11 117586555 NM_153206 NP_694938 A/T I84N plus 24102462 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 11q23.3 adhesion molecule AMICA 37708 rs17122201 SOS2 6655 14 49696303 NM_006939 NP_008870 C/T S483N plus 23639678 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q21 son of sevenless homolog 2 (Drosophila) 37709 rs17122201 SOS2 6655 14 49696303 NM_006939 NP_008870 C/T S483N plus 23639678 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q21 son of sevenless homolog 2 (Drosophila) 37710 rs17122201 SOS2 6655 14 49696303 NM_006939 NP_008870 C/T S483N plus 23639678 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q21 son of sevenless homolog 2 (Drosophila) 37711 rs17122388 ATP5S 27109 14 49859226 NM_015684 NP_056499 A/G D134N plus 24125048 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 37712 rs17122388 ATP5S 27109 14 49859226 NM_015684 NP_056499 A/G D134N plus 24125048 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 37713 rs17122388 ATP5S 27109 14 49859226 NM_015684 NP_056499 A/G D134N plus 24125048 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 14q22.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)" 37714 rs17122812 OR10AD1 121275 12 46883320 XM_062553 XP_062553 A/G V8A plus 23976005 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 37715 rs17122812 OR10AD1 121275 12 46883320 XM_062553 XP_062553 A/G V8A plus 23976005 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 37716 rs17122812 OR10AD1 121275 12 46883320 XM_062553 XP_062553 A/G V8A plus 23976005 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 37717 rs17122945 NIN 51199 14 50359676 NM_016350 NP_057434 A/G R33W plus 23641890 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q22.1 ninein (GSK3B interacting protein) 37718 rs17122945 NIN 51199 14 50359676 NM_016350 NP_057434 A/G R33W plus 23641890 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 14q22.1 ninein (GSK3B interacting protein) 37719 rs17122945 NIN 51199 14 50359676 NM_016350 NP_057434 A/G R33W plus 23641890 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q22.1 ninein (GSK3B interacting protein) 37720 rs17123590 DNMT3B 1789 20 30832838 NM_006892 NP_008823 C/G R54P plus 23557040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37721 rs17123590 DNMT3B 1789 20 30832838 NM_006892 NP_008823 C/G R54P plus 23557040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.06 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37722 rs17123590 DNMT3B 1789 20 30832838 NM_006892 NP_008823 C/G R54P plus 23557040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37723 rs17123590 DNMT3B 1789 20 30832838 NM_175848 NP_787044 C/G R54P plus 23557040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37724 rs17123590 DNMT3B 1789 20 30832838 NM_175848 NP_787044 C/G R54P plus 23557040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.06 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37725 rs17123590 DNMT3B 1789 20 30832838 NM_175848 NP_787044 C/G R54P plus 23557040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37726 rs17123590 DNMT3B 1789 20 30832838 NM_175849 NP_787045 C/G R54P plus 23557040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37727 rs17123590 DNMT3B 1789 20 30832838 NM_175849 NP_787045 C/G R54P plus 23557040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.06 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37728 rs17123590 DNMT3B 1789 20 30832838 NM_175849 NP_787045 C/G R54P plus 23557040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37729 rs17123590 DNMT3B 1789 20 30832838 NM_175850 NP_787046 C/G R66P plus 23557040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37730 rs17123590 DNMT3B 1789 20 30832838 NM_175850 NP_787046 C/G R66P plus 23557040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.06 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37731 rs17123590 DNMT3B 1789 20 30832838 NM_175850 NP_787046 C/G R66P plus 23557040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.2 DNA (cytosine-5-)-methyltransferase 3 beta 37732 rs17123951 SPAG4L 140732 20 31047100 NM_080675 NP_542406 C/T A174T plus 23558871 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.21 sperm associated antigen 4-like 37733 rs17123951 SPAG4L 140732 20 31047100 NM_080675 NP_542406 C/T A174T plus 23558871 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 20q11.21 sperm associated antigen 4-like 37734 rs17123951 SPAG4L 140732 20 31047100 NM_080675 NP_542406 C/T A174T plus 23558871 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.21 sperm associated antigen 4-like 37735 rs17124662 SPATA7 55812 14 87962450 NM_018418 NP_060888 A/G S165N plus 23637487 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q31.3 spermatogenesis associated 7 37736 rs17124662 SPATA7 55812 14 87962450 NM_018418 NP_060888 A/G S165N plus 23637487 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q31.3 spermatogenesis associated 7 37737 rs17124662 SPATA7 55812 14 87962450 NM_018418 NP_060888 A/G S165N plus 23637487 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q31.3 spermatogenesis associated 7 37738 rs17124677 SPATA7 55812 14 87965503 NM_018418 NP_060888 A/G G324E plus 23637534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q31.3 spermatogenesis associated 7 37739 rs17124677 SPATA7 55812 14 87965503 NM_018418 NP_060888 A/G G324E plus 23637534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q31.3 spermatogenesis associated 7 37740 rs17124677 SPATA7 55812 14 87965503 NM_018418 NP_060888 A/G G324E plus 23637534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q31.3 spermatogenesis associated 7 37741 rs17124890 APBA2BP 63941 20 31711082 NM_031232 NP_112509 A/G P254L plus 23564069 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 20q11.22 "amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein" 37742 rs17124890 APBA2BP 63941 20 31711082 NM_031232 NP_112509 A/G P254L plus 23564069 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20q11.22 "amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein" 37743 rs17124890 APBA2BP 63941 20 31711082 NM_031232 NP_112509 A/G P254L plus 23564069 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.22 "amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein" 37744 rs17124969 NID2 22795 14 51590619 NM_007361 NP_031387 C/T D313G plus 23665986 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 37745 rs17124969 NID2 22795 14 51590619 NM_007361 NP_031387 C/T D313G plus 23665986 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 37746 rs17124969 NID2 22795 14 51590619 NM_007361 NP_031387 C/T D313G plus 23665986 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 37747 rs17125266 ESPL1 9700 12 51957272 NM_012291 NP_036423 A/G M693I plus 23959777 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8 extra spindle poles like 1 (S. cerevisiae) 37748 rs17125266 ESPL1 9700 12 51957272 NM_012291 NP_036423 A/G M693I plus 23959777 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 8 extra spindle poles like 1 (S. cerevisiae) 37749 rs17125266 ESPL1 9700 12 51957272 NM_012291 NP_036423 A/G M693I plus 23959777 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 8 extra spindle poles like 1 (S. cerevisiae) 37750 rs17126331 PAPLN 89932 14 72789208 XM_370765 XP_370765 A/C N576H plus 23654021 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37751 rs17126331 PAPLN 89932 14 72789208 XM_370765 XP_370765 A/C N576H plus 23654021 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37752 rs17126331 PAPLN 89932 14 72789208 XM_370765 XP_370765 A/C N576H plus 23654021 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37753 rs17126352 PAPLN 89932 14 72790998 XM_370765 XP_370765 A/G V743I plus 23654024 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37754 rs17126352 PAPLN 89932 14 72790998 XM_370765 XP_370765 A/G V743I plus 23654024 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37755 rs17126352 PAPLN 89932 14 72790998 XM_370765 XP_370765 A/G V743I plus 23654024 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37756 rs17126354 PAPLN 89932 14 72791053 XM_370765 XP_370765 C/T A761V plus 23654025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37757 rs17126354 PAPLN 89932 14 72791053 XM_370765 XP_370765 C/T A761V plus 23654025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37758 rs17126354 PAPLN 89932 14 72791053 XM_370765 XP_370765 C/T A761V plus 23654025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.2 "papilin, proteoglycan-like sulfated glycoprotein" 37759 rs17127066 PAPSS2 9060 10 89477026 NM_004670 NP_004661 A/G V291M plus 28447012 1167 PHARMGKB_PPII PA128747820 180 0.02 123 by freq 10q23-q24 3'-phosphoadenosine 5'-phosphosulfate synthase 2 37760 rs17127898 TRIP11 9321 14 91575668 NM_004239 NP_004230 A/T M39L plus 23645191 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q31-q32 thyroid hormone receptor interactor 11 37761 rs17127898 TRIP11 9321 14 91575668 NM_004239 NP_004230 A/T M39L plus 23645191 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q31-q32 thyroid hormone receptor interactor 11 37762 rs17127898 TRIP11 9321 14 91575668 NM_004239 NP_004230 A/T M39L plus 23645191 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q31-q32 thyroid hormone receptor interactor 11 37763 rs17127947 OR8D4 338662 11 123282512 XM_291838 XP_291838 G/T L55R plus 23633755 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37764 rs17127947 OR8D4 338662 11 123282512 XM_291838 XP_291838 G/T L55R plus 23633755 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37765 rs17127947 OR8D4 338662 11 123282512 XM_291838 XP_291838 G/T L55R plus 23633755 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37766 rs17127950 OR8D4 338662 11 123282622 XM_291838 XP_291838 A/G I92V plus 23633764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37767 rs17127950 OR8D4 338662 11 123282622 XM_291838 XP_291838 A/G I92V plus 23633764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37768 rs17127950 OR8D4 338662 11 123282622 XM_291838 XP_291838 A/G I92V plus 23633764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q24.1 "olfactory receptor, family 8, subfamily D, member 4" 37769 rs17128116 WDHD1 11169 14 54527790 NM_007086 NP_009017 A/G L411P plus 23666400 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q22.2 WD repeat and HMG-box DNA binding protein 1 37770 rs17128116 WDHD1 11169 14 54527790 NM_007086 NP_009017 A/G L411P plus 23666400 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q22.2 WD repeat and HMG-box DNA binding protein 1 37771 rs17128116 WDHD1 11169 14 54527790 NM_007086 NP_009017 A/G L411P plus 23666400 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 14q22.2 WD repeat and HMG-box DNA binding protein 1 37772 rs17128187 OR10G7 390265 11 123414512 XM_372437 XP_372437 C/G T136S plus 23634977 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 11q24.2 "olfactory receptor, family 10, subfamily G, member 7" 37773 rs17128187 OR10G7 390265 11 123414512 XM_372437 XP_372437 C/G T136S plus 23634977 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.1 123 by freq 11q24.2 "olfactory receptor, family 10, subfamily G, member 7" 37774 rs17128187 OR10G7 390265 11 123414512 XM_372437 XP_372437 C/G T136S plus 23634977 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 by freq 11q24.2 "olfactory receptor, family 10, subfamily G, member 7" 37775 rs17128275 DLG7 9787 14 54706012 NM_014750 NP_055565 A/G T469I plus 24140797 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 14q22.2 "discs, large homolog 7 (Drosophila)" 37776 rs17128275 DLG7 9787 14 54706012 NM_014750 NP_055565 A/G T469I plus 24140797 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 14q22.2 "discs, large homolog 7 (Drosophila)" 37777 rs17128275 DLG7 9787 14 54706012 NM_014750 NP_055565 A/G T469I plus 24140797 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 14q22.2 "discs, large homolog 7 (Drosophila)" 37778 rs17128366 ChGn 55790 8 19307752 NM_018371 NP_060841 A/T F473Y plus 23711176 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 37779 rs17128366 ChGn 55790 8 19307752 NM_018371 NP_060841 A/T F473Y plus 23711176 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 37780 rs17128366 ChGn 55790 8 19307752 NM_018371 NP_060841 A/T F473Y plus 23711176 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p21.3 "chondroitin beta1,4 N-acetylgalactosaminyltransferase" 37781 rs17128572 GOLGA5 9950 14 92333735 NM_005113 NP_005104 C/G A67G plus 24128753 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 37782 rs17128572 GOLGA5 9950 14 92333735 NM_005113 NP_005104 C/G A67G plus 24128753 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 37783 rs17128572 GOLGA5 9950 14 92333735 NM_005113 NP_005104 C/G A67G plus 24128753 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 14q32.12-q32.13 "golgi autoantigen, golgin subfamily a, 5" 37784 rs17129219 MFI2 4241 3 198223997 NM_005929 NP_005920 C/T A559T plus 23868025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 3q28-q29 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 37785 rs17129219 MFI2 4241 3 198223997 NM_005929 NP_005920 C/T A559T plus 23868025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q28-q29 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 37786 rs17129219 MFI2 4241 3 198223997 NM_005929 NP_005920 C/T A559T plus 23868025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 3q28-q29 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 37787 rs17129772 IL12RB2 3595 1 67498109 NM_001559 NP_001550 A/G M13V plus 28446406 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 48 0.04 123 by freq 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 37788 rs17129792 IL12RB2 3595 1 67504520 NM_001559 NP_001550 A/G R149Q plus 28446414 595 PGA-UW-FHCRC PGA-AFRICAN-PANEL 40 0.05 123 by freq 1p31.3-p31.2 "interleukin 12 receptor, beta 2" 37789 rs17130745 GBP4 115361 1 89371107 NM_052941 NP_443173 C/T K125E plus 23847980 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p22.2 guanylate binding protein 4 37790 rs17130745 GBP4 115361 1 89371107 NM_052941 NP_443173 C/T K125E plus 23847980 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p22.2 guanylate binding protein 4 37791 rs17130745 GBP4 115361 1 89371107 NM_052941 NP_443173 C/T K125E plus 23847980 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 1p22.2 guanylate binding protein 4 37792 rs17131602 BTBD8 284697 1 92280110 NM_183242 NP_899065 A/G K136R plus 23186326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 1p22.1 BTB (POZ) domain containing 8 37793 rs17131602 BTBD8 284697 1 92280110 NM_183242 NP_899065 A/G K136R plus 23186326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1p22.1 BTB (POZ) domain containing 8 37794 rs17131602 BTBD8 284697 1 92280110 NM_183242 NP_899065 A/G K136R plus 23186326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p22.1 BTB (POZ) domain containing 8 37795 rs17131746 TA-LRRP 23507 1 89761092 NM_015350 NP_056165 A/G D288N plus 23169957 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p22.2 T-cell activation leucine repeat-rich protein 37796 rs17131746 TA-LRRP 23507 1 89761092 NM_015350 NP_056165 A/G D288N plus 23169957 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1p22.2 T-cell activation leucine repeat-rich protein 37797 rs17131746 TA-LRRP 23507 1 89761092 NM_015350 NP_056165 A/G D288N plus 23169957 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p22.2 T-cell activation leucine repeat-rich protein 37798 rs17131915 PKD1L1 168507 7 47706734 NM_138295 NP_612152 C/T D812N plus 23744539 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 7p12.3 polycystic kidney disease 1 like 1 37799 rs17131915 PKD1L1 168507 7 47706734 NM_138295 NP_612152 C/T D812N plus 23744539 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 7p12.3 polycystic kidney disease 1 like 1 37800 rs17131915 PKD1L1 168507 7 47706734 NM_138295 NP_612152 C/T D812N plus 23744539 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7p12.3 polycystic kidney disease 1 like 1 37801 rs17132395 CHST12 55501 7 2245840 NM_018641 NP_061111 A/C R109S plus 23387375 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37802 rs17132395 CHST12 55501 7 2245840 NM_018641 NP_061111 A/C R109S plus 23387375 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.1 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37803 rs17132395 CHST12 55501 7 2245840 NM_018641 NP_061111 A/C R109S plus 23387375 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37804 rs17132399 CHST12 55501 7 2245948 NM_018641 NP_061111 C/G A145P plus 23972715 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37805 rs17132399 CHST12 55501 7 2245948 NM_018641 NP_061111 C/G A145P plus 23972715 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37806 rs17132399 CHST12 55501 7 2245948 NM_018641 NP_061111 C/G A145P plus 23972715 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.38 123 by freq 7p22 carbohydrate (chondroitin 4) sulfotransferase 12 37807 rs17133693 AKR1CL2 83592 10 4865591 NM_031436 NP_113624 A/G K86R plus 24075084 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 10p15.2 "aldo-keto reductase family 1, member C-like 2" 37808 rs17133693 AKR1CL2 83592 10 4865591 NM_031436 NP_113624 A/G K86R plus 24075084 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10p15.2 "aldo-keto reductase family 1, member C-like 2" 37809 rs17133693 AKR1CL2 83592 10 4865591 NM_031436 NP_113624 A/G K86R plus 24075084 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 10p15.2 "aldo-keto reductase family 1, member C-like 2" 37810 rs17134127 COBL 23242 7 50869959 NM_015198 NP_056013 C/G A1015P plus 23765227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37811 rs17134127 COBL 23242 7 50869959 NM_015198 NP_056013 C/G A1015P plus 23765227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37812 rs17134127 COBL 23242 7 50869959 NM_015198 NP_056013 C/G A1015P plus 23765227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37813 rs17134128 COBL 23242 7 50870223 NM_015198 NP_056013 C/T D927N plus 23765235 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37814 rs17134128 COBL 23242 7 50870223 NM_015198 NP_056013 C/T D927N plus 23765235 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37815 rs17134128 COBL 23242 7 50870223 NM_015198 NP_056013 C/T D927N plus 23765235 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 37816 rs17134162 TIGA1 114915 5 111524497 NM_053000 NP_443726 G/T L40F plus 23987855 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q21-q22 TIGA1 37817 rs17134162 TIGA1 114915 5 111524497 NM_053000 NP_443726 G/T L40F plus 23987855 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 5q21-q22 TIGA1 37818 rs17134162 TIGA1 114915 5 111524497 NM_053000 NP_443726 G/T L40F plus 23987855 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 5q21-q22 TIGA1 37819 rs17134592 AKR1C4 1109 10 5250682 NM_001818 NP_001809 C/G L311V plus 24076503 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 10p15-p14 "aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)" 37820 rs17134592 AKR1C4 1109 10 5250682 NM_001818 NP_001809 C/G L311V plus 24076503 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10p15-p14 "aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)" 37821 rs17134592 AKR1C4 1109 10 5250682 NM_001818 NP_001809 C/G L311V plus 24076503 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 10p15-p14 "aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)" 37822 rs17135087 FOXK1 221937 7 4579464 XM_379771 XP_379771 A/G H1904R plus 23515492 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7p22.2 forkhead box K1 37823 rs17135087 FOXK1 221937 7 4579464 XM_379771 XP_379771 A/G H1904R plus 23515492 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.41 123 by freq 7p22.2 forkhead box K1 37824 rs17135087 FOXK1 221937 7 4579464 XM_379771 XP_379771 A/G H1904R plus 23515492 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p22.2 forkhead box K1 37825 rs17135102 FOXK1 221937 7 4587854 XM_379771 XP_379771 C/T M2104T plus 23515626 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 7p22.2 forkhead box K1 37826 rs17135102 FOXK1 221937 7 4587854 XM_379771 XP_379771 C/T M2104T plus 23515626 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 7p22.2 forkhead box K1 37827 rs17135102 FOXK1 221937 7 4587854 XM_379771 XP_379771 C/T M2104T plus 23515626 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 7p22.2 forkhead box K1 37828 rs17135117 U2AF1L1 7310 5 112256569 NM_005083 NP_005074 A/G R445H plus 23418343 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 37829 rs17135117 U2AF1L1 7310 5 112256569 NM_005083 NP_005074 A/G R445H plus 23418343 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 37830 rs17135117 U2AF1L1 7310 5 112256569 NM_005083 NP_005074 A/G R445H plus 23418343 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.11 123 by freq 5q22 U2(RNU2) small nuclear RNA auxillary factor 1-like 1 37831 rs17135737 TBL3 10607 16 1966892 NM_006453 NP_006444 C/T S457P plus 24810924 1303 SEQUENOM CEPH CEPH (92) 184 0.11 123 by freq 16p13.3 transducin (beta)-like 3 37832 rs17135779 PKD1 5310 16 2092517 NM_000296 NP_000287 A/G M3023V minus 24812703 1303 SEQUENOM CEPH CEPH (92) 184 0.49 123 by freq 16p13.3 polycystic kidney disease 1 (autosomal dominant) 37833 rs17135923 FBXL13 222235 7 102147554 NM_145032 NP_659469 C/G G313A plus 24003558 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37834 rs17135923 FBXL13 222235 7 102147554 NM_145032 NP_659469 C/G G313A plus 24003558 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37835 rs17135923 FBXL13 222235 7 102147554 NM_145032 NP_659469 C/G G313A plus 24003558 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37836 rs17136053 SRRM2 23524 16 2753178 NM_016333 NP_057417 C/G S883C plus 23475383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p13.3 serine/arginine repetitive matrix 2 37837 rs17136053 SRRM2 23524 16 2753178 NM_016333 NP_057417 C/G S883C plus 23475383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 16p13.3 serine/arginine repetitive matrix 2 37838 rs17136053 SRRM2 23524 16 2753178 NM_016333 NP_057417 C/G S883C plus 23475383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p13.3 serine/arginine repetitive matrix 2 37839 rs17136118 FBXL13 222235 7 102089200 NM_145032 NP_659469 C/T Y565C plus 24003263 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37840 rs17136118 FBXL13 222235 7 102089200 NM_145032 NP_659469 C/T Y565C plus 24003263 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37841 rs17136118 FBXL13 222235 7 102089200 NM_145032 NP_659469 C/T Y565C plus 24003263 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 7q22.1 F-box and leucine-rich repeat protein 13 37842 rs17136239 HUS1B 135458 6 601343 NM_148959 NP_683762 C/T Q201R plus 23395005 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 6p25.3 HUS1 checkpoint homolog b (S. pombe) 37843 rs17136239 HUS1B 135458 6 601343 NM_148959 NP_683762 C/T Q201R plus 23395005 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 6p25.3 HUS1 checkpoint homolog b (S. pombe) 37844 rs17136239 HUS1B 135458 6 601343 NM_148959 NP_683762 C/T Q201R plus 23395005 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 6p25.3 HUS1 checkpoint homolog b (S. pombe) 37845 rs17137190 CYFIP1 23191 15 20520674 NM_014608 NP_055423 A/G G820D plus 23374950 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q11 cytoplasmic FMR1 interacting protein 1 37846 rs17137190 CYFIP1 23191 15 20520674 NM_014608 NP_055423 A/G G820D plus 23374950 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q11 cytoplasmic FMR1 interacting protein 1 37847 rs17137190 CYFIP1 23191 15 20520674 NM_014608 NP_055423 A/G G820D plus 23374950 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q11 cytoplasmic FMR1 interacting protein 1 37848 rs17137261 ODZ4 26011 11 78242962 XM_166254 XP_166254 C/G E761Q plus 23575205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11q13.4 odd Oz/ten-m homolog 4 37849 rs17137261 ODZ4 26011 11 78242962 XM_166254 XP_166254 C/G E761Q plus 23575205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 11q13.4 odd Oz/ten-m homolog 4 37850 rs17137261 ODZ4 26011 11 78242962 XM_166254 XP_166254 C/G E761Q plus 23575205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q13.4 odd Oz/ten-m homolog 4 37851 rs17137481 TRIM36 55521 5 114497623 NM_018700 NP_061170 C/T N456S plus 24000892 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 5q23.1 tripartite motif-containing 36 37852 rs17137481 TRIM36 55521 5 114497623 NM_018700 NP_061170 C/T N456S plus 24000892 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5q23.1 tripartite motif-containing 36 37853 rs17137481 TRIM36 55521 5 114497623 NM_018700 NP_061170 C/T N456S plus 24000892 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 5q23.1 tripartite motif-containing 36 37854 rs17142503 7A5 346389 7 19973075 NM_182762 NP_877439 A/G P50L plus 23706130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p15.3 putative binding protein 7a5 37855 rs17142503 7A5 346389 7 19973075 NM_182762 NP_877439 A/G P50L plus 23706130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 7p15.3 putative binding protein 7a5 37856 rs17142503 7A5 346389 7 19973075 NM_182762 NP_877439 A/G P50L plus 23706130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p15.3 putative binding protein 7a5 37857 rs17143304 ABCB5 340273 7 20541194 NM_178559 NP_848654 A/G A470T plus 23391171 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 37858 rs17143304 ABCB5 340273 7 20541194 NM_178559 NP_848654 A/G A470T plus 23391171 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.15 123 by freq 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 37859 rs17143304 ABCB5 340273 7 20541194 NM_178559 NP_848654 A/G A470T plus 23391171 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p15.3 "ATP-binding cassette, sub-family B (MDR/TAP), member 5" 37860 rs17145454 HSD17B4 3295 5 118888837 NM_000414 NP_000405 C/T W511R plus 23306348 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5q21 hydroxysteroid (17-beta) dehydrogenase 4 37861 rs17145454 HSD17B4 3295 5 118888837 NM_000414 NP_000405 C/T W511R plus 23306348 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 5q21 hydroxysteroid (17-beta) dehydrogenase 4 37862 rs17145454 HSD17B4 3295 5 118888837 NM_000414 NP_000405 C/T W511R plus 23306348 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q21 hydroxysteroid (17-beta) dehydrogenase 4 37863 rs17145468 CYLN2 7461 7 73259353 NM_003388 NP_003379 A/C D961E plus 24016937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q11.23 cytoplasmic linker 2 37864 rs17145468 CYLN2 7461 7 73259353 NM_003388 NP_003379 A/C D961E plus 24016937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 7q11.23 cytoplasmic linker 2 37865 rs17145468 CYLN2 7461 7 73259353 NM_003388 NP_003379 A/C D961E plus 24016937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 7q11.23 cytoplasmic linker 2 37866 rs17145468 CYLN2 7461 7 73259353 NM_032421 NP_115797 A/C D926E plus 24016937 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q11.23 cytoplasmic linker 2 37867 rs17145468 CYLN2 7461 7 73259353 NM_032421 NP_115797 A/C D926E plus 24016937 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 7q11.23 cytoplasmic linker 2 37868 rs17145468 CYLN2 7461 7 73259353 NM_032421 NP_115797 A/C D926E plus 24016937 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 7q11.23 cytoplasmic linker 2 37869 rs17145838 WBSCR20C 260294 7 71863708 NM_032158 NP_115534 A/G C272R plus 24811947 1303 SEQUENOM CEPH CEPH (92) 184 0.21 123 by freq 7q11.23 Williams Beuren syndrome chromosome region 20C 37870 rs17145838 WBSCR20C 260294 7 71863708 NM_148936 NP_683738 A/G C248R plus 24811947 1303 SEQUENOM CEPH CEPH (92) 184 0.21 123 by freq 7q11.23 Williams Beuren syndrome chromosome region 20C 37871 rs17146691 MRPL49 740 11 64646419 NM_004927 NP_004918 A/G T9A plus 28461459 1335 KYUGEN JPK2 Japanese (100) 200 0.04 123 by freq 11q13 mitochondrial ribosomal protein L49 37872 rs17147682 KLHL7 55975 7 22930822 NM_018846 NP_061334 A/G K18R plus 23419329 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 7p15.3 kelch-like 7 (Drosophila) 37873 rs17147682 KLHL7 55975 7 22930822 NM_018846 NP_061334 A/G K18R plus 23419329 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 7p15.3 kelch-like 7 (Drosophila) 37874 rs17147682 KLHL7 55975 7 22930822 NM_018846 NP_061334 A/G K18R plus 23419329 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 7p15.3 kelch-like 7 (Drosophila) 37875 rs17147987 HTN3 3347 4 71079663 NM_000200 NP_000191 A/G R41Q plus 23352130 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q13 histatin 3 37876 rs17147987 HTN3 3347 4 71079663 NM_000200 NP_000191 A/G R41Q plus 23352130 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 by freq 4q13 histatin 3 37877 rs17147987 HTN3 3347 4 71079663 NM_000200 NP_000191 A/G R41Q plus 23352130 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4q13 histatin 3 37878 rs17147990 HTN3 3347 4 71079682 NM_000200 NP_000191 A/T Y47X plus 23352161 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 4q13 histatin 3 37879 rs17147990 HTN3 3347 4 71079682 NM_000200 NP_000191 A/T Y47X plus 23352161 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 4q13 histatin 3 37880 rs17147990 HTN3 3347 4 71079682 NM_000200 NP_000191 A/T Y47X plus 23352161 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q13 histatin 3 37881 rs17148058 OR5L2 26338 11 55351512 XM_372387 XP_372387 G/T M81R plus 23600173 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily L, member 2" 37882 rs17148058 OR5L2 26338 11 55351512 XM_372387 XP_372387 G/T M81R plus 23600173 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily L, member 2" 37883 rs17148058 OR5L2 26338 11 55351512 XM_372387 XP_372387 G/T M81R plus 23600173 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily L, member 2" 37884 rs17148149 PCLO 27445 7 82227931 XM_168530 XP_168530 C/T R1206Q plus 23529178 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 37885 rs17148149 PCLO 27445 7 82227931 XM_168530 XP_168530 C/T R1206Q plus 23529178 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.24 123 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 37886 rs17148149 PCLO 27445 7 82227931 XM_168530 XP_168530 C/T R1206Q plus 23529178 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 7q11.23-q21.3 piccolo (presynaptic cytomatrix protein) 37887 rs17149023 HIP1 3092 7 74842169 NM_005338 NP_005329 A/T M263K plus 23524762 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q11.23 huntingtin interacting protein 1 37888 rs17149023 HIP1 3092 7 74842169 NM_005338 NP_005329 A/T M263K plus 23524762 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7q11.23 huntingtin interacting protein 1 37889 rs17149023 HIP1 3092 7 74842169 NM_005338 NP_005329 A/T M263K plus 23524762 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q11.23 huntingtin interacting protein 1 37890 rs17149694 ABCB1 5243 7 86783310 NM_000927 NP_000918 A/T S1141T plus 23402351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 37891 rs17149694 ABCB1 5243 7 86783310 NM_000927 NP_000918 A/T S1141T plus 23402351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.14 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 37892 rs17149694 ABCB1 5243 7 86783310 NM_000927 NP_000918 A/T S1141T plus 23402351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q21.1 "ATP-binding cassette, sub-family B (MDR/TAP), member 1" 37893 rs17150243 OR5T3 390154 11 55776501 XM_372393 XP_372393 G/T W66G plus 24102866 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 3" 37894 rs17150243 OR5T3 390154 11 55776501 XM_372393 XP_372393 G/T W66G plus 24102866 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 3" 37895 rs17150243 OR5T3 390154 11 55776501 XM_372393 XP_372393 G/T W66G plus 24102866 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily T, member 3" 37896 rs17150317 OR8K3 219473 11 55843183 XM_166825 XP_166825 A/G I275M plus 23604962 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 37897 rs17150317 OR8K3 219473 11 55843183 XM_166825 XP_166825 A/G I275M plus 23604962 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 37898 rs17150317 OR8K3 219473 11 55843183 XM_166825 XP_166825 A/G I275M plus 23604962 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily K, member 3" 37899 rs17150343 GRM8 2918 7 126138622 NM_000845 NP_000836 C/T I265T minus 24809183 1303 SEQUENOM CEPH CEPH (92) 184 0.12 123 by freq 7q31.3-q32.1 "glutamate receptor, metabotropic 8" 37900 rs17150411 OR8U1 219417 11 55900168 XM_166805 XP_166805 C/T R451C plus 24103466 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 37901 rs17150411 OR8U1 219417 11 55900168 XM_166805 XP_166805 C/T R451C plus 24103466 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.27 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 37902 rs17150411 OR8U1 219417 11 55900168 XM_166805 XP_166805 C/T R451C plus 24103466 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.37 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily U, member 1" 37903 rs17150488 SLCO6A1 133482 5 101802354 NM_173488 NP_775759 C/T K381R plus 23282673 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 37904 rs17150488 SLCO6A1 133482 5 101802354 NM_173488 NP_775759 C/T K381R plus 23282673 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 37905 rs17150488 SLCO6A1 133482 5 101802354 NM_173488 NP_775759 C/T K381R plus 23282673 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5q21.2 "solute carrier organic anion transporter family, member 6A1" 37906 rs17150578 OR5R1 219479 11 55941891 XM_166831 XP_166831 A/G Y132H plus 23606137 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 37907 rs17150578 OR5R1 219479 11 55941891 XM_166831 XP_166831 A/G Y132H plus 23606137 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 37908 rs17150578 OR5R1 219479 11 55941891 XM_166831 XP_166831 A/G Y132H plus 23606137 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily R, member 1" 37909 rs17150664 OR5M3 219482 11 55994063 XM_166834 XP_166834 C/T G163S plus 24104200 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily M, member 3" 37910 rs17150664 OR5M3 219482 11 55994063 XM_166834 XP_166834 C/T G163S plus 24104200 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily M, member 3" 37911 rs17150664 OR5M3 219482 11 55994063 XM_166834 XP_166834 C/T G163S plus 24104200 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 11q12.1 "olfactory receptor, family 5, subfamily M, member 3" 37912 rs17151044 GCC1 79571 7 126818932 NM_024523 NP_078799 C/T R86W minus 28461244 549 KYUGEN CP CEPH (78) 156 0.01 123 by freq 7q32.2 GRIP and coiled-coil domain containing 1 37913 rs17151044 GCC1 79571 7 126818932 NM_024523 NP_078799 C/T R86W minus 28461244 1335 KYUGEN JPK2 Japanese (100) 200 1 123 by freq 7q32.2 GRIP and coiled-coil domain containing 1 37914 rs17151639 NAG8 27099 7 127231767 NM_014411 NP_055226 A/G T24A plus 23359795 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 7q31 brain and nasopharyngeal carcinoma susceptibility protein 37915 rs17151639 NAG8 27099 7 127231767 NM_014411 NP_055226 A/G T24A plus 23359795 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.48 123 by freq 7q31 brain and nasopharyngeal carcinoma susceptibility protein 37916 rs17151639 NAG8 27099 7 127231767 NM_014411 NP_055226 A/G T24A plus 23359795 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q31 brain and nasopharyngeal carcinoma susceptibility protein 37917 rs17151919 LEP 3952 7 127488543 NM_000230 NP_000221 A/G V94M plus 23464705 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q31.3 "leptin (obesity homolog, mouse)" 37918 rs17151919 LEP 3952 7 127488543 NM_000230 NP_000221 A/G V94M plus 23464705 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 7q31.3 "leptin (obesity homolog, mouse)" 37919 rs17151919 LEP 3952 7 127488543 NM_000230 NP_000221 A/G V94M plus 23464705 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q31.3 "leptin (obesity homolog, mouse)" 37920 rs17152779 CNTF 1270 11 58148114 NM_000614 NP_000605 A/G N49S plus 23594825 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.2 ciliary neurotrophic factor 37921 rs17152779 CNTF 1270 11 58148114 NM_000614 NP_000605 A/G N49S plus 23594825 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 11q12.2 ciliary neurotrophic factor 37922 rs17152779 CNTF 1270 11 58148114 NM_000614 NP_000605 A/G N49S plus 23594825 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.2 ciliary neurotrophic factor 37923 rs17153376 CANP 374393 11 58650337 NM_198947 NP_945185 C/G P731A plus 24098733 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.2 cancer-associated nucleoprotein 37924 rs17153376 CANP 374393 11 58650337 NM_198947 NP_945185 C/G P731A plus 24098733 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 11q12.2 cancer-associated nucleoprotein 37925 rs17153376 CANP 374393 11 58650337 NM_198947 NP_945185 C/G P731A plus 24098733 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 11q12.2 cancer-associated nucleoprotein 37926 rs17153732 OR5A1 219982 11 58967371 XM_166899 XP_166899 A/G I52V plus 23599031 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 37927 rs17153732 OR5A1 219982 11 58967371 XM_166899 XP_166899 A/G I52V plus 23599031 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 37928 rs17153732 OR5A1 219982 11 58967371 XM_166899 XP_166899 A/G I52V plus 23599031 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q12.2 "olfactory receptor, family 5, subfamily A, member 1" 37929 rs17153766 OR4D6 219983 11 58981040 XM_166900 XP_166900 C/G E11Q plus 23599217 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37930 rs17153766 OR4D6 219983 11 58981040 XM_166900 XP_166900 C/G E11Q plus 23599217 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37931 rs17153766 OR4D6 219983 11 58981040 XM_166900 XP_166900 C/G E11Q plus 23599217 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37932 rs17153770 OR4D6 219983 11 58981314 XM_166900 XP_166900 C/T F102S plus 23599265 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37933 rs17153770 OR4D6 219983 11 58981314 XM_166900 XP_166900 C/T F102S plus 23599265 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37934 rs17153770 OR4D6 219983 11 58981314 XM_166900 XP_166900 C/T F102S plus 23599265 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 37935 rs17153882 FANK1 92565 10 127658844 NM_145235 NP_660278 C/G R46S plus 28447388 914 HG_BONN_CNS_SNPS EURO96 European 186 0.02 123 by freq 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 37936 rs17153992 CTSB 1508 8 11742059 NM_001908 NP_001899 C/T S235N plus 23391050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 cathepsin B 37937 rs17153992 CTSB 1508 8 11742059 NM_001908 NP_001899 C/T S235N plus 23391050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 8p22 cathepsin B 37938 rs17153992 CTSB 1508 8 11742059 NM_001908 NP_001899 C/T S235N plus 23391050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22 cathepsin B 37939 rs17153992 CTSB 1508 8 11742059 NM_147780 NP_680090 C/T S235N plus 23391050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 cathepsin B 37940 rs17153992 CTSB 1508 8 11742059 NM_147780 NP_680090 C/T S235N plus 23391050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 8p22 cathepsin B 37941 rs17153992 CTSB 1508 8 11742059 NM_147780 NP_680090 C/T S235N plus 23391050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22 cathepsin B 37942 rs17153992 CTSB 1508 8 11742059 NM_147781 NP_680091 C/T S235N plus 23391050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 cathepsin B 37943 rs17153992 CTSB 1508 8 11742059 NM_147781 NP_680091 C/T S235N plus 23391050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 8p22 cathepsin B 37944 rs17153992 CTSB 1508 8 11742059 NM_147781 NP_680091 C/T S235N plus 23391050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22 cathepsin B 37945 rs17153992 CTSB 1508 8 11742059 NM_147782 NP_680092 C/T S235N plus 23391050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 cathepsin B 37946 rs17153992 CTSB 1508 8 11742059 NM_147782 NP_680092 C/T S235N plus 23391050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 8p22 cathepsin B 37947 rs17153992 CTSB 1508 8 11742059 NM_147782 NP_680092 C/T S235N plus 23391050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22 cathepsin B 37948 rs17153992 CTSB 1508 8 11742059 NM_147783 NP_680093 C/T S235N plus 23391050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 cathepsin B 37949 rs17153992 CTSB 1508 8 11742059 NM_147783 NP_680093 C/T S235N plus 23391050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 8p22 cathepsin B 37950 rs17153992 CTSB 1508 8 11742059 NM_147783 NP_680093 C/T S235N plus 23391050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22 cathepsin B 37951 rs17154335 SLC26A4 5172 7 106936245 NM_000441 NP_000432 G/T V609G plus 23440025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q31 "solute carrier family 26, member 4" 37952 rs17154335 SLC26A4 5172 7 106936245 NM_000441 NP_000432 G/T V609G plus 23440025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 7q31 "solute carrier family 26, member 4" 37953 rs17154335 SLC26A4 5172 7 106936245 NM_000441 NP_000432 G/T V609G plus 23440025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q31 "solute carrier family 26, member 4" 37954 rs17154353 SLC26A4 5172 7 106944578 NM_000441 NP_000432 A/G G740S plus 23440099 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q31 "solute carrier family 26, member 4" 37955 rs17154353 SLC26A4 5172 7 106944578 NM_000441 NP_000432 A/G G740S plus 23440099 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7q31 "solute carrier family 26, member 4" 37956 rs17154353 SLC26A4 5172 7 106944578 NM_000441 NP_000432 A/G G740S plus 23440099 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q31 "solute carrier family 26, member 4" 37957 rs17154402 SCAP2 8935 7 26538325 NM_003930 NP_003921 C/G S253T plus 23418710 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p21-p15 src family associated phosphoprotein 2 37958 rs17154402 SCAP2 8935 7 26538325 NM_003930 NP_003921 C/G S253T plus 23418710 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 7p21-p15 src family associated phosphoprotein 2 37959 rs17154402 SCAP2 8935 7 26538325 NM_003930 NP_003921 C/G S253T plus 23418710 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p21-p15 src family associated phosphoprotein 2 37960 rs17154661 LAMB1 3912 7 107195702 NM_002291 NP_002282 A/G V670A plus 23442292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7q22 "laminin, beta 1" 37961 rs17154661 LAMB1 3912 7 107195702 NM_002291 NP_002282 A/G V670A plus 23442292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7q22 "laminin, beta 1" 37962 rs17154661 LAMB1 3912 7 107195702 NM_002291 NP_002282 A/G V670A plus 23442292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q22 "laminin, beta 1" 37963 rs17155937 DNAJB9 4189 7 107807483 NM_012328 NP_036460 A/G R136H plus 23427596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 1 123 by freq 7q31 "DnaJ (Hsp40) homolog, subfamily B, member 9" 37964 rs17155937 DNAJB9 4189 7 107807483 NM_012328 NP_036460 A/G R136H plus 23427596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 7q31 "DnaJ (Hsp40) homolog, subfamily B, member 9" 37965 rs17155937 DNAJB9 4189 7 107807483 NM_012328 NP_036460 A/G R136H plus 23427596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 7q31 "DnaJ (Hsp40) homolog, subfamily B, member 9" 37966 rs17156188 MUC6 4588 11 1006724 XM_290540 XP_290540 C/T I2045T minus 24814565 1303 SEQUENOM CEPH CEPH (92) 184 0.31 123 by freq 11p15.5-p15.4 "mucin 6, gastric" 37967 rs17158450 ADAMTSL3 57188 15 82474432 NM_207517 NP_997400 A/G T1370A plus 23558612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 15q25.2 ADAMTS-like 3 37968 rs17158450 ADAMTSL3 57188 15 82474432 NM_207517 NP_997400 A/G T1370A plus 23558612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q25.2 ADAMTS-like 3 37969 rs17158450 ADAMTSL3 57188 15 82474432 NM_207517 NP_997400 A/G T1370A plus 23558612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25.2 ADAMTS-like 3 37970 rs17159388 LASS4 79603 19 8226555 NM_024552 NP_078828 A/G R119Q plus 23582548 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37971 rs17159388 LASS4 79603 19 8226555 NM_024552 NP_078828 A/G R119Q plus 23582548 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37972 rs17159388 LASS4 79603 19 8226555 NM_024552 NP_078828 A/G R119Q plus 23582548 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37973 rs17160151 FBN3 84467 19 8056393 NM_032447 NP_115823 C/T S2314N plus 23399435 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13 fibrillin 3 37974 rs17160151 FBN3 84467 19 8056393 NM_032447 NP_115823 C/T S2314N plus 23399435 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.26 123 by freq 19p13 fibrillin 3 37975 rs17160151 FBN3 84467 19 8056393 NM_032447 NP_115823 C/T S2314N plus 23399435 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13 fibrillin 3 37976 rs17160194 FBN3 84467 19 8081770 NM_032447 NP_115823 A/T N1431I plus 23399593 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 1 123 by freq 19p13 fibrillin 3 37977 rs17160194 FBN3 84467 19 8081770 NM_032447 NP_115823 A/T N1431I plus 23399593 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 19p13 fibrillin 3 37978 rs17160194 FBN3 84467 19 8081770 NM_032447 NP_115823 A/T N1431I plus 23399593 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19p13 fibrillin 3 37979 rs17160348 LASS4 79603 19 8232866 NM_024552 NP_078828 C/T A353V plus 23582617 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37980 rs17160348 LASS4 79603 19 8232866 NM_024552 NP_078828 C/T A353V plus 23582617 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37981 rs17160348 LASS4 79603 19 8232866 NM_024552 NP_078828 C/T A353V plus 23582617 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37982 rs17160349 LASS4 79603 19 8232944 NM_024552 NP_078828 A/G R379Q plus 23582644 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37983 rs17160349 LASS4 79603 19 8232944 NM_024552 NP_078828 A/G R379Q plus 23582644 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37984 rs17160349 LASS4 79603 19 8232944 NM_024552 NP_078828 A/G R379Q plus 23582644 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 19p13.3 LAG1 longevity assurance homolog 4 (S. cerevisiae) 37985 rs17160775 AGRN 375790 1 1025749 XM_372195 XP_372195 A/G V1666I plus 23640301 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 1p36.33 agrin 37986 rs17160775 AGRN 375790 1 1025749 XM_372195 XP_372195 A/G V1666I plus 23640301 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 1p36.33 agrin 37987 rs17160775 AGRN 375790 1 1025749 XM_372195 XP_372195 A/G V1666I plus 23640301 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1p36.33 agrin 37988 rs17161026 GRM3 2913 7 86112905 NM_000840 NP_000831 C/T G475D minus 28447202 914 HG_BONN_CNS_SNPS EURO96 European 176 0.01 123 by freq 7q21.1-q21.2 "glutamate receptor, metabotropic 3" 37989 rs17161510 TRRAP 8295 7 98164037 NM_003496 NP_003487 G/T R878L plus 23762307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 1 123 by freq 7q21.2-q22.1 transformation/transcription domain-associated protein 37990 rs17161510 TRRAP 8295 7 98164037 NM_003496 NP_003487 G/T R878L plus 23762307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 36 0.03 123 by freq 7q21.2-q22.1 transformation/transcription domain-associated protein 37991 rs17161510 TRRAP 8295 7 98164037 NM_003496 NP_003487 G/T R878L plus 23762307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 7q21.2-q22.1 transformation/transcription domain-associated protein 37992 rs17162549 MAP3K6 9064 1 27366672 NM_004672 NP_004663 C/G G1233A plus 23683105 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 1p35.3 mitogen-activated protein kinase kinase kinase 6 37993 rs17162549 MAP3K6 9064 1 27366672 NM_004672 NP_004663 C/G G1233A plus 23683105 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 1p35.3 mitogen-activated protein kinase kinase kinase 6 37994 rs17162549 MAP3K6 9064 1 27366672 NM_004672 NP_004663 C/G G1233A plus 23683105 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 1p35.3 mitogen-activated protein kinase kinase kinase 6 37995 rs17164935 MEGF10 84466 5 126819181 NM_032446 NP_115822 A/G R1072K plus 23755538 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 5q33 MEGF10 protein 37996 rs17164935 MEGF10 84466 5 126819181 NM_032446 NP_115822 A/G R1072K plus 23755538 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 5q33 MEGF10 protein 37997 rs17164935 MEGF10 84466 5 126819181 NM_032446 NP_115822 A/G R1072K plus 23755538 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 5q33 MEGF10 protein 37998 rs17165851 PDLIM4 8572 5 131635487 NM_003687 NP_003678 G/T G259C plus 23950870 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 5q31.1 PDZ and LIM domain 4 37999 rs17165851 PDLIM4 8572 5 131635487 NM_003687 NP_003678 G/T G259C plus 23950870 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 5q31.1 PDZ and LIM domain 4 38000 rs17165851 PDLIM4 8572 5 131635487 NM_003687 NP_003678 G/T G259C plus 23950870 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.28 123 by freq 5q31.1 PDZ and LIM domain 4 38001 rs17166250 SCIN 85477 7 12448953 NM_033128 NP_149119 C/T F208L plus 23416330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p21.3 scinderin 38002 rs17166250 SCIN 85477 7 12448953 NM_033128 NP_149119 C/T F208L plus 23416330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7p21.3 scinderin 38003 rs17166250 SCIN 85477 7 12448953 NM_033128 NP_149119 C/T F208L plus 23416330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p21.3 scinderin 38004 rs17171345 AMPH 273 7 38249118 NM_001635 NP_001626 C/G M376I plus 23442561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38005 rs17171345 AMPH 273 7 38249118 NM_001635 NP_001626 C/G M376I plus 23442561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38006 rs17171345 AMPH 273 7 38249118 NM_001635 NP_001626 C/G M376I plus 23442561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38007 rs17171345 AMPH 273 7 38249118 NM_139316 NP_647477 C/G M376I plus 23442561 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38008 rs17171345 AMPH 273 7 38249118 NM_139316 NP_647477 C/G M376I plus 23442561 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38009 rs17171345 AMPH 273 7 38249118 NM_139316 NP_647477 C/G M376I plus 23442561 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p14-p13 amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen) 38010 rs17178299 GAS8 2622 16 88631160 NM_001481 NP_001472 A/G R259Q plus 24205752 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16q24.3 growth arrest-specific 8 38011 rs17178299 GAS8 2622 16 88631160 NM_001481 NP_001472 A/G R259Q plus 24205752 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q24.3 growth arrest-specific 8 38012 rs17178299 GAS8 2622 16 88631160 NM_001481 NP_001472 A/G R259Q plus 24205752 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 16q24.3 growth arrest-specific 8 38013 rs17183577 SLC6A15 55117 12 83780029 NM_018057 NP_060527 A/T D278V plus 24407050 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 12q21.3 "solute carrier family 6 (neurotransmitter transporter), member 15" 38014 rs17183577 SLC6A15 55117 12 83780029 NM_018057 NP_060527 A/T D278V plus 24407050 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q21.3 "solute carrier family 6 (neurotransmitter transporter), member 15" 38015 rs17183577 SLC6A15 55117 12 83780029 NM_018057 NP_060527 A/T D278V plus 24407050 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q21.3 "solute carrier family 6 (neurotransmitter transporter), member 15" 38016 rs17183814 SCN2A2 6326 2 165977896 NM_021007 NP_066287 A/G R19K plus 24315129 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 2q23-q24 "sodium channel, voltage-gated, type II, alpha 2" 38017 rs17183814 SCN2A2 6326 2 165977896 NM_021007 NP_066287 A/G R19K plus 24315129 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q23-q24 "sodium channel, voltage-gated, type II, alpha 2" 38018 rs17183814 SCN2A2 6326 2 165977896 NM_021007 NP_066287 A/G R19K plus 24315129 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 2q23-q24 "sodium channel, voltage-gated, type II, alpha 2" 38019 rs17184326 POP1 10940 8 99222264 NM_015029 NP_055844 A/C K522N plus 24505330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 by freq 8q22.1 "processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)" 38020 rs17184326 POP1 10940 8 99222264 NM_015029 NP_055844 A/C K522N plus 24505330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 8q22.1 "processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)" 38021 rs17184326 POP1 10940 8 99222264 NM_015029 NP_055844 A/C K522N plus 24505330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 8q22.1 "processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)" 38022 rs17185492 PF6 200162 1 118356566 NM_206996 NP_996879 A/T E158V plus 24617131 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1p12 projection protein PF6 38023 rs17185492 PF6 200162 1 118356566 NM_206996 NP_996879 A/T E158V plus 24617131 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p12 projection protein PF6 38024 rs17185492 PF6 200162 1 118356566 NM_206996 NP_996879 A/T E158V plus 24617131 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 1p12 projection protein PF6 38025 rs17187262 LAMA3 3909 18 19656296 NM_198129 NP_937762 A/C T796N plus 24218055 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 18q11.2 "laminin, alpha 3" 38026 rs17187262 LAMA3 3909 18 19656296 NM_198129 NP_937762 A/C T796N plus 24218055 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q11.2 "laminin, alpha 3" 38027 rs17187262 LAMA3 3909 18 19656296 NM_198129 NP_937762 A/C T796N plus 24218055 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 18q11.2 "laminin, alpha 3" 38028 rs17188228 EML5 161436 14 88275018 NM_183387 NP_899243 C/T I269V plus 24218330 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 14q31.3 echinoderm microtubule associated protein like 5 38029 rs17188228 EML5 161436 14 88275018 NM_183387 NP_899243 C/T I269V plus 24218330 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 14q31.3 echinoderm microtubule associated protein like 5 38030 rs17188228 EML5 161436 14 88275018 NM_183387 NP_899243 C/T I269V plus 24218330 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.33 123 by freq 14q31.3 echinoderm microtubule associated protein like 5 38031 rs17192170 ZFYVE26 23503 14 67327105 NM_015346 NP_056161 A/T T898S plus 24707373 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 14q24.1 "zinc finger, FYVE domain containing 26" 38032 rs17192170 ZFYVE26 23503 14 67327105 NM_015346 NP_056161 A/T T898S plus 24707373 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q24.1 "zinc finger, FYVE domain containing 26" 38033 rs17192170 ZFYVE26 23503 14 67327105 NM_015346 NP_056161 A/T T898S plus 24707373 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.1 "zinc finger, FYVE domain containing 26" 38034 rs17197552 PPP2R3A 5523 3 137204962 NM_002718 NP_002709 A/G S642G plus 24317227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 38035 rs17197552 PPP2R3A 5523 3 137204962 NM_002718 NP_002709 A/G S642G plus 24317227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 38036 rs17197552 PPP2R3A 5523 3 137204962 NM_002718 NP_002709 A/G S642G plus 24317227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 3q22.1 "protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha" 38037 rs17199104 OR4X1 390113 11 48242724 XM_372376 XP_372376 A/G D246N plus 24208063 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 38038 rs17199104 OR4X1 390113 11 48242724 XM_372376 XP_372376 A/G D246N plus 24208063 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 38039 rs17199104 OR4X1 390113 11 48242724 XM_372376 XP_372376 A/G D246N plus 24208063 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 11p11.12 "olfactory receptor, family 4, subfamily X, member 1" 38040 rs17202741 FBN3 84467 19 8062366 NM_032447 NP_115823 G/T N2005T plus 24418629 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.08 123 by freq 19p13 fibrillin 3 38041 rs17202741 FBN3 84467 19 8062366 NM_032447 NP_115823 G/T N2005T plus 24418629 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 19p13 fibrillin 3 38042 rs17202741 FBN3 84467 19 8062366 NM_032447 NP_115823 G/T N2005T plus 24418629 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19p13 fibrillin 3 38043 rs17202961 LAMA3 3909 18 19678989 NM_198129 NP_937762 A/C P1208T plus 24710451 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 18q11.2 "laminin, alpha 3" 38044 rs17202961 LAMA3 3909 18 19678989 NM_198129 NP_937762 A/C P1208T plus 24710451 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 18q11.2 "laminin, alpha 3" 38045 rs17202961 LAMA3 3909 18 19678989 NM_198129 NP_937762 A/C P1208T plus 24710451 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 18q11.2 "laminin, alpha 3" 38046 rs17203645 MCM2 4171 3 128810007 NM_004526 NP_004517 A/G A396T plus 24620499 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 3q21 "MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" 38047 rs17203645 MCM2 4171 3 128810007 NM_004526 NP_004517 A/G A396T plus 24620499 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q21 "MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" 38048 rs17203645 MCM2 4171 3 128810007 NM_004526 NP_004517 A/G A396T plus 24620499 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q21 "MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" 38049 rs17204075 CLDN18 51208 3 139226206 NM_016369 NP_057453 A/T M149L plus 24620624 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 3q22.3 claudin 18 38050 rs17204075 CLDN18 51208 3 139226206 NM_016369 NP_057453 A/T M149L plus 24620624 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 3q22.3 claudin 18 38051 rs17204075 CLDN18 51208 3 139226206 NM_016369 NP_057453 A/T M149L plus 24620624 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 3q22.3 claudin 18 38052 rs17204557 IGSF10 285313 3 152648756 NM_178822 NP_849144 A/G P571S plus 24620765 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 38053 rs17204557 IGSF10 285313 3 152648756 NM_178822 NP_849144 A/G P571S plus 24620765 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 38054 rs17204557 IGSF10 285313 3 152648756 NM_178822 NP_849144 A/G P571S plus 24620765 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 3q25.1 "immunoglobulin superfamily, member 10" 38055 rs17208390 PCDHGA10 56106 5 140775312 NM_018913 NP_061736 C/T S796P plus 24621860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38056 rs17208390 PCDHGA10 56106 5 140775312 NM_018913 NP_061736 C/T S796P plus 24621860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38057 rs17208390 PCDHGA10 56106 5 140775312 NM_018913 NP_061736 C/T S796P plus 24621860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38058 rs17208390 PCDHGA10 56106 5 140775312 NM_032090 NP_114479 C/T S796P plus 24621860 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38059 rs17208390 PCDHGA10 56106 5 140775312 NM_032090 NP_114479 C/T S796P plus 24621860 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38060 rs17208390 PCDHGA10 56106 5 140775312 NM_032090 NP_114479 C/T S796P plus 24621860 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily A, 10" 38061 rs17208397 PCDHGB7 56099 5 140778823 NM_018927 NP_061750 C/G V405L plus 24621861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38062 rs17208397 PCDHGB7 56099 5 140778823 NM_018927 NP_061750 C/G V405L plus 24621861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38063 rs17208397 PCDHGB7 56099 5 140778823 NM_018927 NP_061750 C/G V405L plus 24621861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38064 rs17208397 PCDHGB7 56099 5 140778823 NM_032101 NP_115272 C/G V405L plus 24621861 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38065 rs17208397 PCDHGB7 56099 5 140778823 NM_032101 NP_115272 C/G V405L plus 24621861 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38066 rs17208397 PCDHGB7 56099 5 140778823 NM_032101 NP_115272 C/G V405L plus 24621861 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 "protocadherin gamma subfamily B, 7" 38067 rs17208425 PCDHGC5 56097 5 140851609 NM_032407 NP_115783 A/G E873G plus 24621869 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.24 123 by freq 5q31 "protocadherin gamma subfamily C, 5" 38068 rs17208425 PCDHGC5 56097 5 140851609 NM_032407 NP_115783 A/G E873G plus 24621869 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.13 123 by freq 5q31 "protocadherin gamma subfamily C, 5" 38069 rs17208425 PCDHGC5 56097 5 140851609 NM_032407 NP_115783 A/G E873G plus 24621869 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 by freq 5q31 "protocadherin gamma subfamily C, 5" 38070 rs17209274 CDC45L 8318 22 17870618 NM_003504 NP_003495 G/T M356R plus 24210974 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.21 CDC45 cell division cycle 45-like (S. cerevisiae) 38071 rs17209274 CDC45L 8318 22 17870618 NM_003504 NP_003495 G/T M356R plus 24210974 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 22q11.21 CDC45 cell division cycle 45-like (S. cerevisiae) 38072 rs17209274 CDC45L 8318 22 17870618 NM_003504 NP_003495 G/T M356R plus 24210974 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.05 123 by freq 22q11.21 CDC45 cell division cycle 45-like (S. cerevisiae) 38073 rs17211285 OR11H6 122748 14 19762293 XM_063315 XP_063315 G/T L195F plus 24720742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38074 rs17211285 OR11H6 122748 14 19762293 XM_063315 XP_063315 G/T L195F plus 24720742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38075 rs17211285 OR11H6 122748 14 19762293 XM_063315 XP_063315 G/T L195F plus 24720742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38076 rs17211369 TEP1 7011 14 19922107 NM_007110 NP_009041 C/T R1155Q plus 24720767 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 14q11.2 telomerase-associated protein 1 38077 rs17211369 TEP1 7011 14 19922107 NM_007110 NP_009041 C/T R1155Q plus 24720767 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q11.2 telomerase-associated protein 1 38078 rs17211369 TEP1 7011 14 19922107 NM_007110 NP_009041 C/T R1155Q plus 24720767 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 telomerase-associated protein 1 38079 rs17211404 TEP1 7011 14 19941813 NM_007110 NP_009041 C/T K368R plus 24720776 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 14q11.2 telomerase-associated protein 1 38080 rs17211404 TEP1 7011 14 19941813 NM_007110 NP_009041 C/T K368R plus 24720776 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q11.2 telomerase-associated protein 1 38081 rs17211404 TEP1 7011 14 19941813 NM_007110 NP_009041 C/T K368R plus 24720776 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q11.2 telomerase-associated protein 1 38082 rs17216532 ARID5B 84159 10 63472153 XM_084482 XP_084482 C/G A639P plus 24522446 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 10q21.3 AT rich interactive domain 5B (MRF1-like) 38083 rs17216532 ARID5B 84159 10 63472153 XM_084482 XP_084482 C/G A639P plus 24522446 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q21.3 AT rich interactive domain 5B (MRF1-like) 38084 rs17216532 ARID5B 84159 10 63472153 XM_084482 XP_084482 C/G A639P plus 24522446 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q21.3 AT rich interactive domain 5B (MRF1-like) 38085 rs17217280 DDX58 23586 9 32470251 NM_014314 NP_055129 A/T D580E plus 24522657 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 9p12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 38086 rs17217280 DDX58 23586 9 32470251 NM_014314 NP_055129 A/T D580E plus 24522657 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9p12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 38087 rs17217280 DDX58 23586 9 32470251 NM_014314 NP_055129 A/T D580E plus 24522657 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 9p12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 38088 rs17218581 HRB2 11103 12 74186649 NM_007043 NP_008974 C/T R134Q plus 24411598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 12q21.1 HIV-1 rev binding protein 2 38089 rs17218581 HRB2 11103 12 74186649 NM_007043 NP_008974 C/T R134Q plus 24411598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 12q21.1 HIV-1 rev binding protein 2 38090 rs17218581 HRB2 11103 12 74186649 NM_007043 NP_008974 C/T R134Q plus 24411598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 12q21.1 HIV-1 rev binding protein 2 38091 rs17219559 TAF1L 138474 9 32624467 NM_153809 NP_722516 C/T M371V plus 24523307 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 9p13.3 "TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa" 38092 rs17219559 TAF1L 138474 9 32624467 NM_153809 NP_722516 C/T M371V plus 24523307 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9p13.3 "TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa" 38093 rs17219559 TAF1L 138474 9 32624467 NM_153809 NP_722516 C/T M371V plus 24523307 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9p13.3 "TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa" 38094 rs17220759 ARSB 411 5 78217179 NM_000046 NP_000037 C/T V376M plus 24412224 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 5p11-q13 arylsulfatase B 38095 rs17220759 ARSB 411 5 78217179 NM_000046 NP_000037 C/T V376M plus 24412224 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5p11-q13 arylsulfatase B 38096 rs17220759 ARSB 411 5 78217179 NM_000046 NP_000037 C/T V376M plus 24412224 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5p11-q13 arylsulfatase B 38097 rs17220759 ARSB 411 5 78217179 NM_198709 NP_942002 C/T V376M plus 24412224 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 5p11-q13 arylsulfatase B 38098 rs17220759 ARSB 411 5 78217179 NM_198709 NP_942002 C/T V376M plus 24412224 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5p11-q13 arylsulfatase B 38099 rs17220759 ARSB 411 5 78217179 NM_198709 NP_942002 C/T V376M plus 24412224 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5p11-q13 arylsulfatase B 38100 rs17224674 OR10AD1 121275 12 46882846 XM_062553 XP_062553 C/T R166Q plus 24413344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 38101 rs17224674 OR10AD1 121275 12 46882846 XM_062553 XP_062553 C/T R166Q plus 24413344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 38102 rs17224674 OR10AD1 121275 12 46882846 XM_062553 XP_062553 C/T R166Q plus 24413344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.12 "olfactory receptor, family 10, subfamily AD, member 1" 38103 rs17224810 MDM1 56890 12 66996159 NM_017440 NP_059136 C/T V383I plus 24611360 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 12q14.3 nuclear protein double minute 1 38104 rs17224810 MDM1 56890 12 66996159 NM_017440 NP_059136 C/T V383I plus 24611360 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q14.3 nuclear protein double minute 1 38105 rs17224810 MDM1 56890 12 66996159 NM_017440 NP_059136 C/T V383I plus 24611360 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 12q14.3 nuclear protein double minute 1 38106 rs17227996 TRPM1 4308 15 29082443 NM_002420 NP_002411 G/T N1159T plus 24612266 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 38107 rs17227996 TRPM1 4308 15 29082443 NM_002420 NP_002411 G/T N1159T plus 24612266 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 38108 rs17227996 TRPM1 4308 15 29082443 NM_002420 NP_002411 G/T N1159T plus 24612266 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 38109 rs17230134 OR7C1 26664 19 14771654 NM_198944 NP_945182 C/T S99G plus 24422826 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 38110 rs17230134 OR7C1 26664 19 14771654 NM_198944 NP_945182 C/T S99G plus 24422826 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 38111 rs17230134 OR7C1 26664 19 14771654 NM_198944 NP_945182 C/T S99G plus 24422826 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.1 "olfactory receptor, family 7, subfamily C, member 1" 38112 rs17234326 OR52E5 390082 11 5879076 XM_372369 XP_372369 C/T I169T plus 24512324 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 38113 rs17234326 OR52E5 390082 11 5879076 XM_372369 XP_372369 C/T I169T plus 24512324 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 38114 rs17234326 OR52E5 390082 11 5879076 XM_372369 XP_372369 C/T I169T plus 24512324 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily E, member 5" 38115 rs17240268 ANPEP 290 15 88148818 NM_001150 NP_001141 A/G A311V plus 24514019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 38116 rs17240268 ANPEP 290 15 88148818 NM_001150 NP_001141 A/G A311V plus 24514019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 38117 rs17240268 ANPEP 290 15 88148818 NM_001150 NP_001141 A/G A311V plus 24514019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q25-q26 "alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)" 38118 rs17243826 GNGT1 2792 7 93184804 NM_021955 NP_068774 A/G E50K plus 24424922 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 7q21.3 "guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1" 38119 rs17243826 GNGT1 2792 7 93184804 NM_021955 NP_068774 A/G E50K plus 24424922 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 7q21.3 "guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1" 38120 rs17243826 GNGT1 2792 7 93184804 NM_021955 NP_068774 A/G E50K plus 24424922 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q21.3 "guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1" 38121 rs17244632 COBLL1 22837 2 165376911 NM_014900 NP_055715 A/G T602I plus 24315468 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 2q24.3 COBL-like 1 38122 rs17244632 COBLL1 22837 2 165376911 NM_014900 NP_055715 A/G T602I plus 24315468 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 2q24.3 COBL-like 1 38123 rs17244632 COBLL1 22837 2 165376911 NM_014900 NP_055715 A/G T602I plus 24315468 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2q24.3 COBL-like 1 38124 rs17245714 AGXT2 64902 5 35034651 NM_031900 NP_114106 C/G P492R plus 24425464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 38125 rs17245714 AGXT2 64902 5 35034651 NM_031900 NP_114106 C/G P492R plus 24425464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 38126 rs17245714 AGXT2 64902 5 35034651 NM_031900 NP_114106 C/G P492R plus 24425464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5p13 alanine-glyoxylate aminotransferase 2 38127 rs17246389 SERPINI2 5276 3 168672309 NM_006217 NP_006208 A/C L6V plus 24315969 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 38128 rs17246389 SERPINI2 5276 3 168672309 NM_006217 NP_006208 A/C L6V plus 24315969 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 38129 rs17246389 SERPINI2 5276 3 168672309 NM_006217 NP_006208 A/C L6V plus 24315969 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 3q26.1-q26.2 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2" 38130 rs17248287 TUBGCP6 85378 22 48961551 NM_020461 NP_065194 C/T V1232M plus 24214852 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 22q13.31-q13.33 "tubulin, gamma complex associated protein 6" 38131 rs17248287 TUBGCP6 85378 22 48961551 NM_020461 NP_065194 C/T V1232M plus 24214852 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q13.31-q13.33 "tubulin, gamma complex associated protein 6" 38132 rs17248287 TUBGCP6 85378 22 48961551 NM_020461 NP_065194 C/T V1232M plus 24214852 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 22q13.31-q13.33 "tubulin, gamma complex associated protein 6" 38133 rs17249244 STXBP5L 9515 3 122458741 XM_045911 XP_045911 C/G T644S plus 24316788 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38134 rs17249244 STXBP5L 9515 3 122458741 XM_045911 XP_045911 C/G T644S plus 24316788 1372 PERLEGEN AFD_AFR_PANEL African American (24) 34 0.12 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38135 rs17249244 STXBP5L 9515 3 122458741 XM_045911 XP_045911 C/G T644S plus 24316788 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38136 rs17255978 ADAM22 53616 7 87399566 NM_004194 NP_004185 A/G V207I plus 24528246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38137 rs17255978 ADAM22 53616 7 87399566 NM_004194 NP_004185 A/G V207I plus 24528246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38138 rs17255978 ADAM22 53616 7 87399566 NM_004194 NP_004185 A/G V207I plus 24528246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38139 rs17255978 ADAM22 53616 7 87399566 NM_016351 NP_057435 A/G V207I plus 24528246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38140 rs17255978 ADAM22 53616 7 87399566 NM_016351 NP_057435 A/G V207I plus 24528246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38141 rs17255978 ADAM22 53616 7 87399566 NM_016351 NP_057435 A/G V207I plus 24528246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38142 rs17255978 ADAM22 53616 7 87399566 NM_021721 NP_068367 A/G V207I plus 24528246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38143 rs17255978 ADAM22 53616 7 87399566 NM_021721 NP_068367 A/G V207I plus 24528246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38144 rs17255978 ADAM22 53616 7 87399566 NM_021721 NP_068367 A/G V207I plus 24528246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38145 rs17255978 ADAM22 53616 7 87399566 NM_021722 NP_068368 A/G V207I plus 24528246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38146 rs17255978 ADAM22 53616 7 87399566 NM_021722 NP_068368 A/G V207I plus 24528246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38147 rs17255978 ADAM22 53616 7 87399566 NM_021722 NP_068368 A/G V207I plus 24528246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38148 rs17255978 ADAM22 53616 7 87399566 NM_021723 NP_068369 A/G V207I plus 24528246 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38149 rs17255978 ADAM22 53616 7 87399566 NM_021723 NP_068369 A/G V207I plus 24528246 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38150 rs17255978 ADAM22 53616 7 87399566 NM_021723 NP_068369 A/G V207I plus 24528246 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 7q21 a disintegrin and metalloproteinase domain 22 38151 rs17256042 LR8 28959 7 149927886 NM_014020 NP_054739 A/G R180W plus 24416863 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 7q36.1 LR8 protein 38152 rs17256042 LR8 28959 7 149927886 NM_014020 NP_054739 A/G R180W plus 24416863 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 7q36.1 LR8 protein 38153 rs17256042 LR8 28959 7 149927886 NM_014020 NP_054739 A/G R180W plus 24416863 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 7q36.1 LR8 protein 38154 rs17257155 CATSPER4 378807 1 26210581 XM_371237 XP_371237 A/G I293V plus 24616970 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 1p35.3 "cation channel, sperm associated 4" 38155 rs17257155 CATSPER4 378807 1 26210581 XM_371237 XP_371237 A/G I293V plus 24616970 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 1p35.3 "cation channel, sperm associated 4" 38156 rs17257155 CATSPER4 378807 1 26210581 XM_371237 XP_371237 A/G I293V plus 24616970 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p35.3 "cation channel, sperm associated 4" 38157 rs17258982 CR2 1380 1 204041759 NM_001877 NP_001868 A/G I993V plus 24617495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 1q32 complement component (3d/Epstein Barr virus) receptor 2 38158 rs17258982 CR2 1380 1 204041759 NM_001877 NP_001868 A/G I993V plus 24617495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q32 complement component (3d/Epstein Barr virus) receptor 2 38159 rs17258982 CR2 1380 1 204041759 NM_001877 NP_001868 A/G I993V plus 24617495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32 complement component (3d/Epstein Barr virus) receptor 2 38160 rs17263496 DNAH5 1767 5 13790444 NM_001369 NP_001360 A/G T3791I plus 24419002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 38161 rs17263496 DNAH5 1767 5 13790444 NM_001369 NP_001360 A/G T3791I plus 24419002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 38162 rs17263496 DNAH5 1767 5 13790444 NM_001369 NP_001360 A/G T3791I plus 24419002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 5p15.2 "dynein, axonemal, heavy polypeptide 5" 38163 rs17263971 SYNPO2 171024 4 120305649 XM_050219 XP_050219 A/C Q174H plus 24328923 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 4q27 synaptopodin 2 38164 rs17263971 SYNPO2 171024 4 120305649 XM_050219 XP_050219 A/C Q174H plus 24328923 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 4q27 synaptopodin 2 38165 rs17263971 SYNPO2 171024 4 120305649 XM_050219 XP_050219 A/C Q174H plus 24328923 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 4q27 synaptopodin 2 38166 rs17265513 ZHX3 23051 20 39266042 NM_015035 NP_055850 C/T N310S plus 24517598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 20q12 zinc fingers and homeoboxes 3 38167 rs17265513 ZHX3 23051 20 39266042 NM_015035 NP_055850 C/T N310S plus 24517598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20q12 zinc fingers and homeoboxes 3 38168 rs17265513 ZHX3 23051 20 39266042 NM_015035 NP_055850 C/T N310S plus 24517598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q12 zinc fingers and homeoboxes 3 38169 rs17266511 APRG1 339883 3 37451431 NM_178339 NP_848029 C/T H107Y plus 24318090 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 3p22.1 AP20 region protein 38170 rs17266511 APRG1 339883 3 37451431 NM_178339 NP_848029 C/T H107Y plus 24318090 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3p22.1 AP20 region protein 38171 rs17266511 APRG1 339883 3 37451431 NM_178339 NP_848029 C/T H107Y plus 24318090 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3p22.1 AP20 region protein 38172 rs17268666 POFUT1 23509 20 30282511 NM_015352 NP_056167 C/T L322F plus 24530059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 20q11 protein O-fucosyltransferase 1 38173 rs17268666 POFUT1 23509 20 30282511 NM_015352 NP_056167 C/T L322F plus 24530059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20q11 protein O-fucosyltransferase 1 38174 rs17268666 POFUT1 23509 20 30282511 NM_015352 NP_056167 C/T L322F plus 24530059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11 protein O-fucosyltransferase 1 38175 rs17277025 OR4K14 122740 14 19571884 XM_063308 XP_063308 G/T Q275K plus 24720686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38176 rs17277025 OR4K14 122740 14 19571884 XM_063308 XP_063308 G/T Q275K plus 24720686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38177 rs17277025 OR4K14 122740 14 19571884 XM_063308 XP_063308 G/T Q275K plus 24720686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38178 rs17277221 OR11H6 122748 14 19762414 XM_063315 XP_063315 C/T Y236H plus 24720743 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38179 rs17277221 OR11H6 122748 14 19762414 XM_063315 XP_063315 C/T Y236H plus 24720743 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38180 rs17277221 OR11H6 122748 14 19762414 XM_063315 XP_063315 C/T Y236H plus 24720743 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.21 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38181 rs17277228 OR11H6 122748 14 19762483 XM_063315 XP_063315 C/T C259R plus 24720744 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38182 rs17277228 OR11H6 122748 14 19762483 XM_063315 XP_063315 C/T C259R plus 24720744 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.23 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38183 rs17277228 OR11H6 122748 14 19762483 XM_063315 XP_063315 C/T C259R plus 24720744 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.23 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 6" 38184 rs17277270 OR11H4 390442 14 19781692 XM_372507 XP_372507 C/G T301S plus 24720754 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 4" 38185 rs17277270 OR11H4 390442 14 19781692 XM_372507 XP_372507 C/G T301S plus 24720754 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 4" 38186 rs17277270 OR11H4 390442 14 19781692 XM_372507 XP_372507 C/G T301S plus 24720754 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q11.2 "olfactory receptor, family 11, subfamily H, member 4" 38187 rs17279437 SLC6A20 54716 3 45789098 NM_020208 NP_064593 A/G T199M plus 24319963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 38188 rs17279437 SLC6A20 54716 3 45789098 NM_020208 NP_064593 A/G T199M plus 24319963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 38189 rs17279437 SLC6A20 54716 3 45789098 NM_020208 NP_064593 A/G T199M plus 24319963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 3p21.3 "solute carrier family 6 (neurotransmitter transporter), member 20" 38190 rs17279712 LAP1B 26092 1 176609437 NM_015602 NP_056417 A/C Q293H plus 24631352 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 1q24.2 lamina-associated polypeptide 1B 38191 rs17279712 LAP1B 26092 1 176609437 NM_015602 NP_056417 A/C Q293H plus 24631352 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 1q24.2 lamina-associated polypeptide 1B 38192 rs17279712 LAP1B 26092 1 176609437 NM_015602 NP_056417 A/C Q293H plus 24631352 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q24.2 lamina-associated polypeptide 1B 38193 rs17280682 NALP14 338323 11 7048145 NM_176822 NP_789792 C/T L1010F plus 24520120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 38194 rs17280682 NALP14 338323 11 7048145 NM_176822 NP_789792 C/T L1010F plus 24520120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 38195 rs17280682 NALP14 338323 11 7048145 NM_176822 NP_789792 C/T L1010F plus 24520120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 11p15.4 "NACHT, leucine rich repeat and PYD containing 14" 38196 rs17286758 LRRC2 79442 3 46561626 NM_024512 NP_078788 C/T T83A plus 24322059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 3p21.31 leucine rich repeat containing 2 38197 rs17286758 LRRC2 79442 3 46561626 NM_024512 NP_078788 C/T T83A plus 24322059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p21.31 leucine rich repeat containing 2 38198 rs17286758 LRRC2 79442 3 46561626 NM_024512 NP_078788 C/T T83A plus 24322059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 3p21.31 leucine rich repeat containing 2 38199 rs17286758 LRRC2 79442 3 46561626 NM_024750 NP_079026 C/T T83A plus 24322059 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 3p21.31 leucine rich repeat containing 2 38200 rs17286758 LRRC2 79442 3 46561626 NM_024750 NP_079026 C/T T83A plus 24322059 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p21.31 leucine rich repeat containing 2 38201 rs17286758 LRRC2 79442 3 46561626 NM_024750 NP_079026 C/T T83A plus 24322059 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 3p21.31 leucine rich repeat containing 2 38202 rs17286891 PCDHB7 56129 5 140532958 NM_018940 NP_061763 A/G E120K plus 24621855 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 5q31 protocadherin beta 7 38203 rs17286891 PCDHB7 56129 5 140532958 NM_018940 NP_061763 A/G E120K plus 24621855 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q31 protocadherin beta 7 38204 rs17286891 PCDHB7 56129 5 140532958 NM_018940 NP_061763 A/G E120K plus 24621855 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31 protocadherin beta 7 38205 rs17288108 NTN4 59277 12 94634363 NM_021229 NP_067052 A/G Y205H plus 24432151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 12q22-q23 netrin 4 38206 rs17288108 NTN4 59277 12 94634363 NM_021229 NP_067052 A/G Y205H plus 24432151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 12q22-q23 netrin 4 38207 rs17288108 NTN4 59277 12 94634363 NM_021229 NP_067052 A/G Y205H plus 24432151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q22-q23 netrin 4 38208 rs17292725 STARD6 147323 18 50134887 NM_139171 NP_631910 A/G R19X plus 24531481 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 18q21.2 START domain containing 6 38209 rs17292725 STARD6 147323 18 50134887 NM_139171 NP_631910 A/G R19X plus 24531481 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 18q21.2 START domain containing 6 38210 rs17292725 STARD6 147323 18 50134887 NM_139171 NP_631910 A/G R19X plus 24531481 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18q21.2 START domain containing 6 38211 rs17293607 MMP10 4319 11 102155599 NM_002425 NP_002416 C/T G65R plus 24531732 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 38212 rs17293607 MMP10 4319 11 102155599 NM_002425 NP_002416 C/T G65R plus 24531732 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 38213 rs17293607 MMP10 4319 11 102155599 NM_002425 NP_002416 C/T G65R plus 24531732 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q22.3 matrix metalloproteinase 10 (stromelysin 2) 38214 rs17293705 LSS 4047 21 46436227 NM_001001438 NP_001001438 A/G P688L plus 24531763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38215 rs17293705 LSS 4047 21 46436227 NM_001001438 NP_001001438 A/G P688L plus 24531763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38216 rs17293705 LSS 4047 21 46436227 NM_001001438 NP_001001438 A/G P688L plus 24531763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38217 rs17293705 LSS 4047 21 46436227 NM_002340 NP_002331 A/G P688L plus 24531763 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38218 rs17293705 LSS 4047 21 46436227 NM_002340 NP_002331 A/G P688L plus 24531763 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38219 rs17293705 LSS 4047 21 46436227 NM_002340 NP_002331 A/G P688L plus 24531763 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 21q22.3 "lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)" 38220 rs17297951 CGI-77 51633 8 92166238 NM_016023 NP_057107 A/G R283Q plus 24223625 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 8q21.3 CGI-77 protein 38221 rs17297951 CGI-77 51633 8 92166238 NM_016023 NP_057107 A/G R283Q plus 24223625 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 8q21.3 CGI-77 protein 38222 rs17297951 CGI-77 51633 8 92166238 NM_016023 NP_057107 A/G R283Q plus 24223625 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 8q21.3 CGI-77 protein 38223 rs17300141 NQO2 4835 6 2957777 NM_000904 NP_000895 A/G G58D plus 24424040 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 38224 rs17300141 NQO2 4835 6 2957777 NM_000904 NP_000895 A/G G58D plus 24424040 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 38225 rs17300141 NQO2 4835 6 2957777 NM_000904 NP_000895 A/G G58D plus 24424040 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6pter-q12 "NAD(P)H dehydrogenase, quinone 2" 38226 rs17300770 GPLD1 2822 6 24570999 NM_001503 NP_001494 C/G D275E plus 24333981 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 by freq 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 38227 rs17300770 GPLD1 2822 6 24570999 NM_001503 NP_001494 C/G D275E plus 24333981 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 38228 rs17300770 GPLD1 2822 6 24570999 NM_001503 NP_001494 C/G D275E plus 24333981 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 6p22.3-p22.2 glycosylphosphatidylinositol specific phospholipase D1 38229 rs17300936 C8A 731 1 57095379 NM_000562 NP_000553 C/T P575L plus 24631972 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1p32 "complement component 8, alpha polypeptide" 38230 rs17300936 C8A 731 1 57095379 NM_000562 NP_000553 C/T P575L plus 24631972 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 1p32 "complement component 8, alpha polypeptide" 38231 rs17300936 C8A 731 1 57095379 NM_000562 NP_000553 C/T P575L plus 24631972 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 by freq 1p32 "complement component 8, alpha polypeptide" 38232 rs17301126 BPIL3 128859 20 31083161 NM_174897 NP_777557 C/T T16M plus 24533879 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 20q11.22 bactericidal/permeability-increasing protein-like 3 38233 rs17301126 BPIL3 128859 20 31083161 NM_174897 NP_777557 C/T T16M plus 24533879 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.11 123 by freq 20q11.22 bactericidal/permeability-increasing protein-like 3 38234 rs17301126 BPIL3 128859 20 31083161 NM_174897 NP_777557 C/T T16M plus 24533879 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 20q11.22 bactericidal/permeability-increasing protein-like 3 38235 rs17301750 DNCH2 79659 11 102532444 XM_370652 XP_370652 A/G T1288A plus 24534061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 38236 rs17301750 DNCH2 79659 11 102532444 XM_370652 XP_370652 A/G T1288A plus 24534061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 38237 rs17301750 DNCH2 79659 11 102532444 XM_370652 XP_370652 A/G T1288A plus 24534061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 11q21-q22.1 "dynein, cytoplasmic, heavy polypeptide 2" 38238 rs17301766 TOPBP1 11073 3 134839488 NM_007027 NP_008958 A/G S730L plus 24334264 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 3q22.1 topoisomerase (DNA) II binding protein 38239 rs17301766 TOPBP1 11073 3 134839488 NM_007027 NP_008958 A/G S730L plus 24334264 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3q22.1 topoisomerase (DNA) II binding protein 38240 rs17301766 TOPBP1 11073 3 134839488 NM_007027 NP_008958 A/G S730L plus 24334264 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q22.1 topoisomerase (DNA) II binding protein 38241 rs17308108 OR4K14 122740 14 19552759 XM_063308 XP_063308 A/C L458R plus 24226534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38242 rs17308108 OR4K14 122740 14 19552759 XM_063308 XP_063308 A/C L458R plus 24226534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38243 rs17308108 OR4K14 122740 14 19552759 XM_063308 XP_063308 A/C L458R plus 24226534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.17 123 by freq 14q11.2 "olfactory receptor, family 4, subfamily K, member 14" 38244 rs17314986 SGCG 6445 13 22722818 NM_000231 NP_000222 A/G R116H plus 24434391 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 13q12 "sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)" 38245 rs17314986 SGCG 6445 13 22722818 NM_000231 NP_000222 A/G R116H plus 24434391 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 13q12 "sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)" 38246 rs17314986 SGCG 6445 13 22722818 NM_000231 NP_000222 A/G R116H plus 24434391 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 13q12 "sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)" 38247 rs17322140 ELF2 1998 4 140350780 NM_006874 NP_006865 A/G P64L plus 24428528 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q28 E74-like factor 2 (ets domain transcription factor) 38248 rs17322140 ELF2 1998 4 140350780 NM_006874 NP_006865 A/G P64L plus 24428528 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q28 E74-like factor 2 (ets domain transcription factor) 38249 rs17322140 ELF2 1998 4 140350780 NM_006874 NP_006865 A/G P64L plus 24428528 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q28 E74-like factor 2 (ets domain transcription factor) 38250 rs17323225 XDH 7498 2 31504916 NM_000379 NP_000370 C/T I646V plus 24636534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 2p23-p22 xanthine dehydrogenase 38251 rs17323225 XDH 7498 2 31504916 NM_000379 NP_000370 C/T I646V plus 24636534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 2p23-p22 xanthine dehydrogenase 38252 rs17323225 XDH 7498 2 31504916 NM_000379 NP_000370 C/T I646V plus 24636534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p23-p22 xanthine dehydrogenase 38253 rs17324153 SCRN1 9805 7 29739381 NM_014766 NP_055581 C/T Q338R plus 24435206 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7p14.3-p14.1 secernin 1 38254 rs17324153 SCRN1 9805 7 29739381 NM_014766 NP_055581 C/T Q338R plus 24435206 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 7p14.3-p14.1 secernin 1 38255 rs17324153 SCRN1 9805 7 29739381 NM_014766 NP_055581 C/T Q338R plus 24435206 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p14.3-p14.1 secernin 1 38256 rs17324609 OR51F1 256892 11 4746972 XM_171424 XP_171424 A/G A251V plus 24525401 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38257 rs17324609 OR51F1 256892 11 4746972 XM_171424 XP_171424 A/G A251V plus 24525401 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38258 rs17324609 OR51F1 256892 11 4746972 XM_171424 XP_171424 A/G A251V plus 24525401 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38259 rs17324812 OR51F1 256892 11 4747687 XM_171424 XP_171424 C/T T13A plus 24525459 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38260 rs17324812 OR51F1 256892 11 4747687 XM_171424 XP_171424 C/T T13A plus 24525459 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38261 rs17324812 OR51F1 256892 11 4747687 XM_171424 XP_171424 C/T T13A plus 24525459 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 11p15.4 "olfactory receptor, family 51, subfamily F, member 1" 38262 rs17327254 OR52R1 119695 11 4781925 XM_061627 XP_061627 A/G F88L plus 24526154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 38263 rs17327254 OR52R1 119695 11 4781925 XM_061627 XP_061627 A/G F88L plus 24526154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 38264 rs17327254 OR52R1 119695 11 4781925 XM_061627 XP_061627 A/G F88L plus 24526154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11p15.4 "olfactory receptor, family 52, subfamily R, member 1" 38265 rs17328034 SLC25A13 10165 7 95482848 NM_014251 NP_055066 C/T E141K plus 24328403 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.05 123 by freq 7q21.3 "solute carrier family 25, member 13 (citrin)" 38266 rs17328034 SLC25A13 10165 7 95482848 NM_014251 NP_055066 C/T E141K plus 24328403 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 7q21.3 "solute carrier family 25, member 13 (citrin)" 38267 rs17328034 SLC25A13 10165 7 95482848 NM_014251 NP_055066 C/T E141K plus 24328403 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 7q21.3 "solute carrier family 25, member 13 (citrin)" 38268 rs17328673 CDH12 1010 5 21852963 NM_004061 NP_004052 C/T I284V plus 24328588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 38269 rs17328673 CDH12 1010 5 21852963 NM_004061 NP_004052 C/T I284V plus 24328588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 38270 rs17328673 CDH12 1010 5 21852963 NM_004061 NP_004052 C/T I284V plus 24328588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5p14-p13 "cadherin 12, type 2 (N-cadherin 2)" 38271 rs17333103 PI3 5266 20 43237027 NM_002638 NP_002629 C/T T17M plus 24539392 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 38272 rs17333103 PI3 5266 20 43237027 NM_002638 NP_002629 C/T T17M plus 24539392 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 38273 rs17333103 PI3 5266 20 43237027 NM_002638 NP_002629 C/T T17M plus 24539392 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 20q12-q13 "protease inhibitor 3, skin-derived (SKALP)" 38274 rs17335870 SPAG1 6674 8 101275567 NM_003114 NP_003105 A/G E331K plus 24438568 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 8q22.2 sperm associated antigen 1 38275 rs17335870 SPAG1 6674 8 101275567 NM_003114 NP_003105 A/G E331K plus 24438568 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8q22.2 sperm associated antigen 1 38276 rs17335870 SPAG1 6674 8 101275567 NM_003114 NP_003105 A/G E331K plus 24438568 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 8q22.2 sperm associated antigen 1 38277 rs17335870 SPAG1 6674 8 101275567 NM_172218 NP_757367 A/G E331K plus 24438568 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 8q22.2 sperm associated antigen 1 38278 rs17335870 SPAG1 6674 8 101275567 NM_172218 NP_757367 A/G E331K plus 24438568 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8q22.2 sperm associated antigen 1 38279 rs17335870 SPAG1 6674 8 101275567 NM_172218 NP_757367 A/G E331K plus 24438568 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 8q22.2 sperm associated antigen 1 38280 rs17336208 DEK 7913 6 18364604 NM_003472 NP_003463 A/G V140A plus 24438661 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 6p23 DEK oncogene (DNA binding) 38281 rs17336208 DEK 7913 6 18364604 NM_003472 NP_003463 A/G V140A plus 24438661 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p23 DEK oncogene (DNA binding) 38282 rs17336208 DEK 7913 6 18364604 NM_003472 NP_003463 A/G V140A plus 24438661 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p23 DEK oncogene (DNA binding) 38283 rs17337252 RB1CC1 9821 8 53749259 NM_014781 NP_055596 A/G M234T plus 24527204 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.48 123 by freq 8p22-q21.13 RB1-inducible coiled-coil 1 38284 rs17337252 RB1CC1 9821 8 53749259 NM_014781 NP_055596 A/G M234T plus 24527204 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 8p22-q21.13 RB1-inducible coiled-coil 1 38285 rs17337252 RB1CC1 9821 8 53749259 NM_014781 NP_055596 A/G M234T plus 24527204 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 8p22-q21.13 RB1-inducible coiled-coil 1 38286 rs17343819 CPA6 57094 8 68559469 NM_020361 NP_065094 C/T N249S plus 24540639 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 8q13.1 carboxypeptidase A6 38287 rs17343819 CPA6 57094 8 68559469 NM_020361 NP_065094 C/T N249S plus 24540639 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 8q13.1 carboxypeptidase A6 38288 rs17343819 CPA6 57094 8 68559469 NM_020361 NP_065094 C/T N249S plus 24540639 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q13.1 carboxypeptidase A6 38289 rs17348572 CLSTN2 64084 3 141661079 NM_022131 NP_071414 C/T I331T plus 24340383 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 3q23-q24 calsyntenin 2 38290 rs17348572 CLSTN2 64084 3 141661079 NM_022131 NP_071414 C/T I331T plus 24340383 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 3q23-q24 calsyntenin 2 38291 rs17348572 CLSTN2 64084 3 141661079 NM_022131 NP_071414 C/T I331T plus 24340383 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q23-q24 calsyntenin 2 38292 rs17354559 PIAS3 10401 1 143072982 NM_006099 NP_006090 C/G S381C plus 24236227 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1q21 "protein inhibitor of activated STAT, 3" 38293 rs17354559 PIAS3 10401 1 143072982 NM_006099 NP_006090 C/G S381C plus 24236227 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q21 "protein inhibitor of activated STAT, 3" 38294 rs17354559 PIAS3 10401 1 143072982 NM_006099 NP_006090 C/G S381C plus 24236227 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21 "protein inhibitor of activated STAT, 3" 38295 rs17356233 CHD1L 9557 1 143965318 NM_004284 NP_004275 C/G H350Q plus 24236709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1q12 chromodomain helicase DNA binding protein 1-like 38296 rs17356233 CHD1L 9557 1 143965318 NM_004284 NP_004275 C/G H350Q plus 24236709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q12 chromodomain helicase DNA binding protein 1-like 38297 rs17356233 CHD1L 9557 1 143965318 NM_004284 NP_004275 C/G H350Q plus 24236709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 1q12 chromodomain helicase DNA binding protein 1-like 38298 rs17363472 HIVEP3 59269 1 41716301 NM_024503 NP_078779 C/G Q1087H plus 24237607 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1p34 human immunodeficiency virus type I enhancer binding protein 3 38299 rs17363472 HIVEP3 59269 1 41716301 NM_024503 NP_078779 C/G Q1087H plus 24237607 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 1p34 human immunodeficiency virus type I enhancer binding protein 3 38300 rs17363472 HIVEP3 59269 1 41716301 NM_024503 NP_078779 C/G Q1087H plus 24237607 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p34 human immunodeficiency virus type I enhancer binding protein 3 38301 rs17366743 ACDC 9370 3 188054791 NM_004797 NP_004788 C/T Y111H plus 24334025 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 3q27 "adipocyte, C1Q and collagen domain containing" 38302 rs17366743 ACDC 9370 3 188054791 NM_004797 NP_004788 C/T Y111H plus 24334025 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3q27 "adipocyte, C1Q and collagen domain containing" 38303 rs17366743 ACDC 9370 3 188054791 NM_004797 NP_004788 C/T Y111H plus 24334025 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q27 "adipocyte, C1Q and collagen domain containing" 38304 rs17366761 FIS 202299 5 95220442 NM_175616 NP_783315 C/T R85C plus 24443790 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.21 123 by freq 5q15 FIS 38305 rs17366761 FIS 202299 5 95220442 NM_175616 NP_783315 C/T R85C plus 24443790 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 5q15 FIS 38306 rs17366761 FIS 202299 5 95220442 NM_175616 NP_783315 C/T R85C plus 24443790 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 5q15 FIS 38307 rs17368018 WDFY3 23001 4 85970073 NM_014991 NP_055806 C/T I3032V plus 24238912 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 4q22.1 WD repeat and FYVE domain containing 3 38308 rs17368018 WDFY3 23001 4 85970073 NM_014991 NP_055806 C/T I3032V plus 24238912 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q22.1 WD repeat and FYVE domain containing 3 38309 rs17368018 WDFY3 23001 4 85970073 NM_014991 NP_055806 C/T I3032V plus 24238912 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 4q22.1 WD repeat and FYVE domain containing 3 38310 rs17368402 ATP1A4 480 1 156947129 NM_144699 NP_653300 A/G E297K plus 24239022 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 38311 rs17368402 ATP1A4 480 1 156947129 NM_144699 NP_653300 A/G E297K plus 24239022 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 38312 rs17368402 ATP1A4 480 1 156947129 NM_144699 NP_653300 A/G E297K plus 24239022 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q21-q23 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" 38313 rs17368528 H6PD 9563 1 9258479 NM_004285 NP_004276 C/T P554L plus 24239061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 38314 rs17368528 H6PD 9563 1 9258479 NM_004285 NP_004276 C/T P554L plus 24239061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 38315 rs17368528 H6PD 9563 1 9258479 NM_004285 NP_004276 C/T P554L plus 24239061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 1p36 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 38316 rs17374285 BCAT1 586 12 24938579 NM_005504 NP_005495 A/G T59M plus 24434401 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 12pter-q12 "branched chain aminotransferase 1, cytosolic" 38317 rs17374285 BCAT1 586 12 24938579 NM_005504 NP_005495 A/G T59M plus 24434401 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12pter-q12 "branched chain aminotransferase 1, cytosolic" 38318 rs17374285 BCAT1 586 12 24938579 NM_005504 NP_005495 A/G T59M plus 24434401 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12pter-q12 "branched chain aminotransferase 1, cytosolic" 38319 rs17374761 TNN 63923 1 171794954 XM_040527 XP_040527 C/T T499M plus 24632494 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 1q23-q24 tenascin N 38320 rs17374761 TNN 63923 1 171794954 XM_040527 XP_040527 C/T T499M plus 24632494 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.34 123 by freq 1q23-q24 tenascin N 38321 rs17374761 TNN 63923 1 171794954 XM_040527 XP_040527 C/T T499M plus 24632494 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 1q23-q24 tenascin N 38322 rs17375215 MANSC1 54682 12 12375031 NM_018050 NP_060520 C/T D165N plus 24334635 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12p13.2 MANSC domain containing 1 38323 rs17375215 MANSC1 54682 12 12375031 NM_018050 NP_060520 C/T D165N plus 24334635 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12p13.2 MANSC domain containing 1 38324 rs17375215 MANSC1 54682 12 12375031 NM_018050 NP_060520 C/T D165N plus 24334635 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 12p13.2 MANSC domain containing 1 38325 rs17375461 MRPS27 23107 5 71555420 NM_015084 NP_055899 C/T G284D plus 24334702 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.37 123 by freq 5q13.2 mitochondrial ribosomal protein S27 38326 rs17375461 MRPS27 23107 5 71555420 NM_015084 NP_055899 C/T G284D plus 24334702 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.26 123 by freq 5q13.2 mitochondrial ribosomal protein S27 38327 rs17375461 MRPS27 23107 5 71555420 NM_015084 NP_055899 C/T G284D plus 24334702 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q13.2 mitochondrial ribosomal protein S27 38328 rs17384126 GTF3C3 9330 2 197488032 NM_012086 NP_036218 C/T N70S plus 24345102 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 2q33.1 "general transcription factor IIIC, polypeptide 3, 102kDa" 38329 rs17384126 GTF3C3 9330 2 197488032 NM_012086 NP_036218 C/T N70S plus 24345102 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 2q33.1 "general transcription factor IIIC, polypeptide 3, 102kDa" 38330 rs17384126 GTF3C3 9330 2 197488032 NM_012086 NP_036218 C/T N70S plus 24345102 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 2q33.1 "general transcription factor IIIC, polypeptide 3, 102kDa" 38331 rs17388190 CPA5 93979 7 129583803 NM_080385 NP_525124 C/T P79S plus 24436574 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 7q32 carboxypeptidase A5 38332 rs17388190 CPA5 93979 7 129583803 NM_080385 NP_525124 C/T P79S plus 24436574 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 7q32 carboxypeptidase A5 38333 rs17388190 CPA5 93979 7 129583803 NM_080385 NP_525124 C/T P79S plus 24436574 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7q32 carboxypeptidase A5 38334 rs17396317 BASE 317716 20 31254038 NM_173859 NP_776258 A/G R138H plus 24535018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 20q11.21 breast cancer and salivary gland expression gene 38335 rs17396317 BASE 317716 20 31254038 NM_173859 NP_776258 A/G R138H plus 24535018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20q11.21 breast cancer and salivary gland expression gene 38336 rs17396317 BASE 317716 20 31254038 NM_173859 NP_776258 A/G R138H plus 24535018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.21 breast cancer and salivary gland expression gene 38337 rs17402034 UTP14C 9724 13 51501897 XM_375024 XP_375024 A/G R319H plus 24448463 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 38338 rs17402034 UTP14C 9724 13 51501897 XM_375024 XP_375024 A/G R319H plus 24448463 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 38339 rs17402034 UTP14C 9724 13 51501897 XM_375024 XP_375024 A/G R319H plus 24448463 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.2-q13.3 "UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 38340 rs17402892 CENPJ 55835 13 24377541 NM_018451 NP_060921 A/C S879A plus 24448711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 13q12.13 centromere protein J 38341 rs17402892 CENPJ 55835 13 24377541 NM_018451 NP_060921 A/C S879A plus 24448711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 13q12.13 centromere protein J 38342 rs17402892 CENPJ 55835 13 24377541 NM_018451 NP_060921 A/C S879A plus 24448711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12.13 centromere protein J 38343 rs17409304 CLCA2 9635 1 86612393 NM_006536 NP_006527 C/G Q306E plus 24245311 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.4 123 by freq 1p31-p22 "chloride channel, calcium activated, family member 2" 38344 rs17409304 CLCA2 9635 1 86612393 NM_006536 NP_006527 C/G Q306E plus 24245311 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 1p31-p22 "chloride channel, calcium activated, family member 2" 38345 rs17409304 CLCA2 9635 1 86612393 NM_006536 NP_006527 C/G Q306E plus 24245311 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 1p31-p22 "chloride channel, calcium activated, family member 2" 38346 rs17414086 SENP6 26054 6 76401151 NM_015571 NP_056386 C/T T121M plus 24451929 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 6q13-q14.3 SUMO1/sentrin specific protease 6 38347 rs17414086 SENP6 26054 6 76401151 NM_015571 NP_056386 C/T T121M plus 24451929 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q13-q14.3 SUMO1/sentrin specific protease 6 38348 rs17414086 SENP6 26054 6 76401151 NM_015571 NP_056386 C/T T121M plus 24451929 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q13-q14.3 SUMO1/sentrin specific protease 6 38349 rs17416074 CNTN2 6900 1 201774497 NM_005076 NP_005067 A/G V1024I plus 24640725 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1q32.1 contactin 2 (axonal) 38350 rs17416074 CNTN2 6900 1 201774497 NM_005076 NP_005067 A/G V1024I plus 24640725 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1q32.1 contactin 2 (axonal) 38351 rs17416074 CNTN2 6900 1 201774497 NM_005076 NP_005067 A/G V1024I plus 24640725 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1q32.1 contactin 2 (axonal) 38352 rs17419546 VWF 7450 12 5998704 NM_000552 NP_000543 C/T T1381A plus 24649631 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 12p13.3 von Willebrand factor 38353 rs17419546 VWF 7450 12 5998704 NM_000552 NP_000543 C/T T1381A plus 24649631 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 12p13.3 von Willebrand factor 38354 rs17419546 VWF 7450 12 5998704 NM_000552 NP_000543 C/T T1381A plus 24649631 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.27 123 by freq 12p13.3 von Willebrand factor 38355 rs17420378 STK4 6789 20 43062549 NM_006282 NP_006273 A/G V312M plus 24538286 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 20q11.2-q13.2 serine/threonine kinase 4 38356 rs17420378 STK4 6789 20 43062549 NM_006282 NP_006273 A/G V312M plus 24538286 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 20q11.2-q13.2 serine/threonine kinase 4 38357 rs17420378 STK4 6789 20 43062549 NM_006282 NP_006273 A/G V312M plus 24538286 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20q11.2-q13.2 serine/threonine kinase 4 38358 rs17421133 TNXB 7148 6 32118251 NM_019105 NP_061978 A/T N4102I plus 24650088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 6p21.3 tenascin XB 38359 rs17421133 TNXB 7148 6 32118251 NM_019105 NP_061978 A/T N4102I plus 24650088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6p21.3 tenascin XB 38360 rs17421133 TNXB 7148 6 32118251 NM_019105 NP_061978 A/T N4102I plus 24650088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 6p21.3 tenascin XB 38361 rs17421133 TNXB 7148 6 32118251 NM_032470 NP_115859 A/T N486I plus 24650088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.38 123 by freq 6p21.3 tenascin XB 38362 rs17421133 TNXB 7148 6 32118251 NM_032470 NP_115859 A/T N486I plus 24650088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6p21.3 tenascin XB 38363 rs17421133 TNXB 7148 6 32118251 NM_032470 NP_115859 A/T N486I plus 24650088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 6p21.3 tenascin XB 38364 rs17422688 WFDC5 149708 20 43172533 NM_145652 NP_663627 A/G H97Y plus 24538947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 20q13.12 WAP four-disulfide core domain 5 38365 rs17422688 WFDC5 149708 20 43172533 NM_145652 NP_663627 A/G H97Y plus 24538947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20q13.12 WAP four-disulfide core domain 5 38366 rs17422688 WFDC5 149708 20 43172533 NM_145652 NP_663627 A/G H97Y plus 24538947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 20q13.12 WAP four-disulfide core domain 5 38367 rs17424158 MIPEP 4285 13 23334475 NM_005932 NP_005923 C/T R340Q plus 24439618 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 13q12 mitochondrial intermediate peptidase 38368 rs17424158 MIPEP 4285 13 23334475 NM_005932 NP_005923 C/T R340Q plus 24439618 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 13q12 mitochondrial intermediate peptidase 38369 rs17424158 MIPEP 4285 13 23334475 NM_005932 NP_005923 C/T R340Q plus 24439618 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 13q12 mitochondrial intermediate peptidase 38370 rs17432496 SEMA6A 57556 5 115839172 NM_020796 NP_065847 C/T R559H plus 24453575 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 38371 rs17432496 SEMA6A 57556 5 115839172 NM_020796 NP_065847 C/T R559H plus 24453575 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 38372 rs17432496 SEMA6A 57556 5 115839172 NM_020796 NP_065847 C/T R559H plus 24453575 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q23.1 "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A" 38373 rs17432615 NACSIN 23301 2 63087790 NM_015252 NP_056067 A/C K755Q plus 24641830 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 2p15 NPF/calponin-like protein 38374 rs17432615 NACSIN 23301 2 63087790 NM_015252 NP_056067 A/C K755Q plus 24641830 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2p15 NPF/calponin-like protein 38375 rs17432615 NACSIN 23301 2 63087790 NM_015252 NP_056067 A/C K755Q plus 24641830 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 2p15 NPF/calponin-like protein 38376 rs17433780 GBP3 2635 1 89186839 NM_018284 NP_060754 A/G C459R plus 24250511 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.44 123 by freq 1p22.2 guanylate binding protein 3 38377 rs17433780 GBP3 2635 1 89186839 NM_018284 NP_060754 A/G C459R plus 24250511 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 1p22.2 guanylate binding protein 3 38378 rs17433780 GBP3 2635 1 89186839 NM_018284 NP_060754 A/G C459R plus 24250511 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 by freq 1p22.2 guanylate binding protein 3 38379 rs17438900 GPR103 84109 4 122659227 NM_198179 NP_937822 A/C F61V plus 24343804 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 4q27 G protein-coupled receptor 103 38380 rs17438900 GPR103 84109 4 122659227 NM_198179 NP_937822 A/C F61V plus 24343804 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q27 G protein-coupled receptor 103 38381 rs17438900 GPR103 84109 4 122659227 NM_198179 NP_937822 A/C F61V plus 24343804 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 4q27 G protein-coupled receptor 103 38382 rs17445374 ZNF431 170959 19 21118198 NM_133473 NP_597730 A/G D3G plus 23758252 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 19p13.11 zinc finger protein 431 38383 rs17445374 ZNF431 170959 19 21118198 NM_133473 NP_597730 A/G D3G plus 23758252 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 19p13.11 zinc finger protein 431 38384 rs17445374 ZNF431 170959 19 21118198 NM_133473 NP_597730 A/G D3G plus 23758252 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.11 zinc finger protein 431 38385 rs17448235 SGOL2 151246 2 201262061 NM_152524 NP_689737 A/G I496V plus 24656065 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 2q33.2 shugoshin-like 2 (S. pombe) 38386 rs17448235 SGOL2 151246 2 201262061 NM_152524 NP_689737 A/G I496V plus 24656065 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.12 123 by freq 2q33.2 shugoshin-like 2 (S. pombe) 38387 rs17448235 SGOL2 151246 2 201262061 NM_152524 NP_689737 A/G I496V plus 24656065 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q33.2 shugoshin-like 2 (S. pombe) 38388 rs17454674 GALGT 2583 12 56306849 NM_001478 NP_001469 A/G A516V plus 24459902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12q13.3 UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T) 38389 rs17454674 GALGT 2583 12 56306849 NM_001478 NP_001469 A/G A516V plus 24459902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12q13.3 UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T) 38390 rs17454674 GALGT 2583 12 56306849 NM_001478 NP_001469 A/G A516V plus 24459902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.3 UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T) 38391 rs17459334 TMPO 7112 12 97430298 NM_003276 NP_003267 C/G Q599E plus 24442406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 12q22 thymopoietin 38392 rs17459334 TMPO 7112 12 97430298 NM_003276 NP_003267 C/G Q599E plus 24442406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 12q22 thymopoietin 38393 rs17459334 TMPO 7112 12 97430298 NM_003276 NP_003267 C/G Q599E plus 24442406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12q22 thymopoietin 38394 rs17462252 ATP10D 57205 4 47411804 NM_020453 NP_065186 A/G S959N plus 24658271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4p12 "ATPase, Class V, type 10D" 38395 rs17462252 ATP10D 57205 4 47411804 NM_020453 NP_065186 A/G S959N plus 24658271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 4p12 "ATPase, Class V, type 10D" 38396 rs17462252 ATP10D 57205 4 47411804 NM_020453 NP_065186 A/G S959N plus 24658271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p12 "ATPase, Class V, type 10D" 38397 rs17468739 IFIT2 3433 10 91055929 NM_001547 NP_001538 A/C E79A plus 24546676 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 38398 rs17468739 IFIT2 3433 10 91055929 NM_001547 NP_001538 A/C E79A plus 24546676 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 38399 rs17468739 IFIT2 3433 10 91055929 NM_001547 NP_001538 A/C E79A plus 24546676 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q23-q25 interferon-induced protein with tetratricopeptide repeats 2 38400 rs17470454 DTNBP1 84062 6 15631427 NM_032122 NP_115498 A/G P272S plus 24347388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6p22.3 dystrobrevin binding protein 1 38401 rs17470454 DTNBP1 84062 6 15631427 NM_032122 NP_115498 A/G P272S plus 24347388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 6p22.3 dystrobrevin binding protein 1 38402 rs17470454 DTNBP1 84062 6 15631427 NM_032122 NP_115498 A/G P272S plus 24347388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p22.3 dystrobrevin binding protein 1 38403 rs17470454 DTNBP1 84062 6 15631427 NM_183041 NP_898862 A/G P191S plus 24347388 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6p22.3 dystrobrevin binding protein 1 38404 rs17470454 DTNBP1 84062 6 15631427 NM_183041 NP_898862 A/G P191S plus 24347388 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 6p22.3 dystrobrevin binding protein 1 38405 rs17470454 DTNBP1 84062 6 15631427 NM_183041 NP_898862 A/G P191S plus 24347388 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6p22.3 dystrobrevin binding protein 1 38406 rs17472401 NPHP4 261734 1 5874509 NM_015102 NP_055917 A/G R848W plus 24250047 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1p36.22 nephronophthisis 4 38407 rs17472401 NPHP4 261734 1 5874509 NM_015102 NP_055917 A/G R848W plus 24250047 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p36.22 nephronophthisis 4 38408 rs17472401 NPHP4 261734 1 5874509 NM_015102 NP_055917 A/G R848W plus 24250047 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36.22 nephronophthisis 4 38409 rs17475375 TMEM2 23670 9 71534574 NM_013390 NP_037522 C/T G1280D plus 24560126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 9q13-q21 transmembrane protein 2 38410 rs17475375 TMEM2 23670 9 71534574 NM_013390 NP_037522 C/T G1280D plus 24560126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 9q13-q21 transmembrane protein 2 38411 rs17475375 TMEM2 23670 9 71534574 NM_013390 NP_037522 C/T G1280D plus 24560126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q13-q21 transmembrane protein 2 38412 rs17476783 DBC1 1620 9 119050623 NM_014618 NP_055433 C/T R358H plus 24547159 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 9q32-q33 deleted in bladder cancer 1 38413 rs17476783 DBC1 1620 9 119050623 NM_014618 NP_055433 C/T R358H plus 24547159 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 9q32-q33 deleted in bladder cancer 1 38414 rs17476783 DBC1 1620 9 119050623 NM_014618 NP_055433 C/T R358H plus 24547159 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q32-q33 deleted in bladder cancer 1 38415 rs17479168 ALDH4A1 8659 1 18947234 NM_003748 NP_003739 C/T V470I plus 24258089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38416 rs17479168 ALDH4A1 8659 1 18947234 NM_003748 NP_003739 C/T V470I plus 24258089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38417 rs17479168 ALDH4A1 8659 1 18947234 NM_003748 NP_003739 C/T V470I plus 24258089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38418 rs17479168 ALDH4A1 8659 1 18947234 NM_170726 NP_733844 C/T V470I plus 24258089 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38419 rs17479168 ALDH4A1 8659 1 18947234 NM_170726 NP_733844 C/T V470I plus 24258089 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38420 rs17479168 ALDH4A1 8659 1 18947234 NM_170726 NP_733844 C/T V470I plus 24258089 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p36 "aldehyde dehydrogenase 4 family, member A1" 38421 rs17482078 ARTS-1 51752 5 96144622 NM_016442 NP_057526 C/T R725Q plus 24448934 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 38422 rs17482078 ARTS-1 51752 5 96144622 NM_016442 NP_057526 C/T R725Q plus 24448934 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 38423 rs17482078 ARTS-1 51752 5 96144622 NM_016442 NP_057526 C/T R725Q plus 24448934 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 5q15 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator 38424 rs17484219 MPHOSPH1 9585 10 91469191 NM_016195 NP_057279 G/T E490D plus 24549292 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 10q23.32 M-phase phosphoprotein 1 38425 rs17484219 MPHOSPH1 9585 10 91469191 NM_016195 NP_057279 G/T E490D plus 24549292 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 10q23.32 M-phase phosphoprotein 1 38426 rs17484219 MPHOSPH1 9585 10 91469191 NM_016195 NP_057279 G/T E490D plus 24549292 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10q23.32 M-phase phosphoprotein 1 38427 rs17497479 LCN7 64129 1 31712047 NM_022164 NP_071447 G/T A69S plus 24253616 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.02 123 by freq 1p35.1 lipocalin 7 38428 rs17497479 LCN7 64129 1 31712047 NM_022164 NP_071447 G/T A69S plus 24253616 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 1p35.1 lipocalin 7 38429 rs17497479 LCN7 64129 1 31712047 NM_022164 NP_071447 G/T A69S plus 24253616 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 1p35.1 lipocalin 7 38430 rs17498752 ANKRD12 23253 18 9244785 NM_015208 NP_056023 C/T T507I plus 24451909 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 18p11.22 ankyrin repeat domain 12 38431 rs17498752 ANKRD12 23253 18 9244785 NM_015208 NP_056023 C/T T507I plus 24451909 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 18p11.22 ankyrin repeat domain 12 38432 rs17498752 ANKRD12 23253 18 9244785 NM_015208 NP_056023 C/T T507I plus 24451909 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18p11.22 ankyrin repeat domain 12 38433 rs17500380 OR4D6 219983 11 58981341 XM_166900 XP_166900 A/C D111A plus 24563653 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 38434 rs17500380 OR4D6 219983 11 58981341 XM_166900 XP_166900 A/C D111A plus 24563653 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 38435 rs17500380 OR4D6 219983 11 58981341 XM_166900 XP_166900 A/C D111A plus 24563653 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 6" 38436 rs17501584 OR4D9 390199 11 59039437 XM_372413 XP_372413 A/G Q159R plus 24564002 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 9" 38437 rs17501584 OR4D9 390199 11 59039437 XM_372413 XP_372413 A/G Q159R plus 24564002 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 9" 38438 rs17501584 OR4D9 390199 11 59039437 XM_372413 XP_372413 A/G Q159R plus 24564002 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.2 "olfactory receptor, family 4, subfamily D, member 9" 38439 rs17502738 ZBTB5 9925 9 37431650 NM_014872 NP_055687 C/T D300G plus 24550956 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 9p13.1 zinc finger and BTB domain containing 5 38440 rs17502738 ZBTB5 9925 9 37431650 NM_014872 NP_055687 C/T D300G plus 24550956 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 9p13.1 zinc finger and BTB domain containing 5 38441 rs17502738 ZBTB5 9925 9 37431650 NM_014872 NP_055687 C/T D300G plus 24550956 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9p13.1 zinc finger and BTB domain containing 5 38442 rs17511668 N4BP2 55728 4 39926333 NM_018177 NP_060647 G/T S101I plus 24653670 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 4p14 Nedd4 binding protein 2 38443 rs17511668 N4BP2 55728 4 39926333 NM_018177 NP_060647 G/T S101I plus 24653670 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4p14 Nedd4 binding protein 2 38444 rs17511668 N4BP2 55728 4 39926333 NM_018177 NP_060647 G/T S101I plus 24653670 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p14 Nedd4 binding protein 2 38445 rs17514547 PCM1 5108 8 17874285 NM_006197 NP_006188 A/G R1251H plus 24664236 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 8p22-p21.3 pericentriolar material 1 38446 rs17514547 PCM1 5108 8 17874285 NM_006197 NP_006188 A/G R1251H plus 24664236 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8p22-p21.3 pericentriolar material 1 38447 rs17514547 PCM1 5108 8 17874285 NM_006197 NP_006188 A/G R1251H plus 24664236 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p22-p21.3 pericentriolar material 1 38448 rs17521570 RAI14 26064 5 34793423 NM_015577 NP_056392 A/G A44T plus 24466420 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 5p13.3-p13.2 retinoic acid induced 14 38449 rs17521570 RAI14 26064 5 34793423 NM_015577 NP_056392 A/G A44T plus 24466420 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 5p13.3-p13.2 retinoic acid induced 14 38450 rs17521570 RAI14 26064 5 34793423 NM_015577 NP_056392 A/G A44T plus 24466420 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.2 123 by freq 5p13.3-p13.2 retinoic acid induced 14 38451 rs17524906 RC3 23312 15 49617104 NM_015263 NP_056078 A/G T497M plus 24667210 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 15q15.3 rabconnectin-3 38452 rs17524906 RC3 23312 15 49617104 NM_015263 NP_056078 A/G T497M plus 24667210 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q15.3 rabconnectin-3 38453 rs17524906 RC3 23312 15 49617104 NM_015263 NP_056078 A/G T497M plus 24667210 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15.3 rabconnectin-3 38454 rs17525809 P2RX7 5027 12 120055409 NM_002562 NP_002553 C/T V76A plus 24454257 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38455 rs17525809 P2RX7 5027 12 120055409 NM_002562 NP_002553 C/T V76A plus 24454257 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38456 rs17525809 P2RX7 5027 12 120055409 NM_002562 NP_002553 C/T V76A plus 24454257 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38457 rs17525809 P2RX7 5027 12 120055409 NM_177427 NP_803176 C/T V76A plus 24454257 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38458 rs17525809 P2RX7 5027 12 120055409 NM_177427 NP_803176 C/T V76A plus 24454257 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38459 rs17525809 P2RX7 5027 12 120055409 NM_177427 NP_803176 C/T V76A plus 24454257 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12q24 "purinergic receptor P2X, ligand-gated ion channel, 7" 38460 rs17531522 OR8H3 390152 11 55647025 XM_372391 XP_372391 A/G I201V plus 24567088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily H, member 3" 38461 rs17531522 OR8H3 390152 11 55647025 XM_372391 XP_372391 A/G I201V plus 24567088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily H, member 3" 38462 rs17531522 OR8H3 390152 11 55647025 XM_372391 XP_372391 A/G I201V plus 24567088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q12.1 "olfactory receptor, family 8, subfamily H, member 3" 38463 rs17535963 TRPM3 80036 9 70380427 NM_020952 NP_066003 G/T N1554T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38464 rs17535963 TRPM3 80036 9 70380427 NM_020952 NP_066003 G/T N1554T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38465 rs17535963 TRPM3 80036 9 70380427 NM_020952 NP_066003 G/T N1554T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38466 rs17535963 TRPM3 80036 9 70380427 NM_024971 NP_079247 G/T N1566T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38467 rs17535963 TRPM3 80036 9 70380427 NM_024971 NP_079247 G/T N1566T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38468 rs17535963 TRPM3 80036 9 70380427 NM_024971 NP_079247 G/T N1566T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38469 rs17535963 TRPM3 80036 9 70380427 NM_206944 NP_996827 G/T N1544T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38470 rs17535963 TRPM3 80036 9 70380427 NM_206944 NP_996827 G/T N1544T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38471 rs17535963 TRPM3 80036 9 70380427 NM_206944 NP_996827 G/T N1544T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38472 rs17535963 TRPM3 80036 9 70380427 NM_206945 NP_996828 G/T N1556T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38473 rs17535963 TRPM3 80036 9 70380427 NM_206945 NP_996828 G/T N1556T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38474 rs17535963 TRPM3 80036 9 70380427 NM_206945 NP_996828 G/T N1556T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38475 rs17535963 TRPM3 80036 9 70380427 NM_206946 NP_996829 G/T N1579T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38476 rs17535963 TRPM3 80036 9 70380427 NM_206946 NP_996829 G/T N1579T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38477 rs17535963 TRPM3 80036 9 70380427 NM_206946 NP_996829 G/T N1579T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38478 rs17535963 TRPM3 80036 9 70380427 NM_206947 NP_996830 G/T N1569T plus 24556805 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38479 rs17535963 TRPM3 80036 9 70380427 NM_206947 NP_996830 G/T N1569T plus 24556805 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.18 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38480 rs17535963 TRPM3 80036 9 70380427 NM_206947 NP_996830 G/T N1569T plus 24556805 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 9q21.2 "transient receptor potential cation channel, subfamily M, member 3" 38481 rs17540247 UNQ9370 400454 15 91550887 NM_207447 NP_997330 A/G R154Q plus 24667978 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 15q26.1 IFMQ9370 38482 rs17540247 UNQ9370 400454 15 91550887 NM_207447 NP_997330 A/G R154Q plus 24667978 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q26.1 IFMQ9370 38483 rs17540247 UNQ9370 400454 15 91550887 NM_207447 NP_997330 A/G R154Q plus 24667978 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 15q26.1 IFMQ9370 38484 rs17541107 GPR111 222611 6 47757224 NM_153839 NP_722581 A/T L324M plus 24368241 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 6p12.3 G protein-coupled receptor 111 38485 rs17541107 GPR111 222611 6 47757224 NM_153839 NP_722581 A/T L324M plus 24368241 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 6p12.3 G protein-coupled receptor 111 38486 rs17541107 GPR111 222611 6 47757224 NM_153839 NP_722581 A/T L324M plus 24368241 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.29 123 by freq 6p12.3 G protein-coupled receptor 111 38487 rs17545756 ABCB8 11194 7 150170460 NM_007188 NP_009119 C/T R304C plus 24458174 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 7q36 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" 38488 rs17545756 ABCB8 11194 7 150170460 NM_007188 NP_009119 C/T R304C plus 24458174 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 7q36 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" 38489 rs17545756 ABCB8 11194 7 150170460 NM_007188 NP_009119 C/T R304C plus 24458174 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 7q36 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" 38490 rs17550713 PIP5K2C 79837 12 56274151 NM_024779 NP_079055 C/T V84A plus 24459596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.05 123 by freq 12q13.2 "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma" 38491 rs17550713 PIP5K2C 79837 12 56274151 NM_024779 NP_079055 C/T V84A plus 24459596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12q13.2 "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma" 38492 rs17550713 PIP5K2C 79837 12 56274151 NM_024779 NP_079055 C/T V84A plus 24459596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 12q13.2 "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma" 38493 rs17551608 KIBRA 23286 5 167768117 NM_015238 NP_056053 C/T R250C plus 24671238 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 5q35.1 KIBRA protein 38494 rs17551608 KIBRA 23286 5 167768117 NM_015238 NP_056053 C/T R250C plus 24671238 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 5q35.1 KIBRA protein 38495 rs17551608 KIBRA 23286 5 167768117 NM_015238 NP_056053 C/T R250C plus 24671238 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q35.1 KIBRA protein 38496 rs17554211 PCOLCE2 26577 3 144025147 NM_013363 NP_037495 G/T P292T plus 24370181 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 3q21-q24 procollagen C-endopeptidase enhancer 2 38497 rs17554211 PCOLCE2 26577 3 144025147 NM_013363 NP_037495 G/T P292T plus 24370181 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 3q21-q24 procollagen C-endopeptidase enhancer 2 38498 rs17554211 PCOLCE2 26577 3 144025147 NM_013363 NP_037495 G/T P292T plus 24370181 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 3q21-q24 procollagen C-endopeptidase enhancer 2 38499 rs17555920 ATP10A 57194 15 23504291 NM_024490 NP_077816 C/T E834K plus 24672482 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 38500 rs17555920 ATP10A 57194 15 23504291 NM_024490 NP_077816 C/T E834K plus 24672482 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 38501 rs17555920 ATP10A 57194 15 23504291 NM_024490 NP_077816 C/T E834K plus 24672482 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 15q11-q13 "ATPase, Class V, type 10A" 38502 rs17558532 KRT25C 342574 17 36189402 NM_181537 NP_853515 C/T A284T plus 24559654 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 17q21.2 keratin 25C 38503 rs17558532 KRT25C 342574 17 36189402 NM_181537 NP_853515 C/T A284T plus 24559654 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 17q21.2 keratin 25C 38504 rs17558532 KRT25C 342574 17 36189402 NM_181537 NP_853515 C/T A284T plus 24559654 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q21.2 keratin 25C 38505 rs17558560 KRT25C 342574 17 36190185 NM_181537 NP_853515 C/T G193S plus 24559662 1371 PERLEGEN AFD_EUR_PANEL European American (24) 24 0.5 123 by freq 17q21.2 keratin 25C 38506 rs17558560 KRT25C 342574 17 36190185 NM_181537 NP_853515 C/T G193S plus 24559662 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.2 123 by freq 17q21.2 keratin 25C 38507 rs17558560 KRT25C 342574 17 36190185 NM_181537 NP_853515 C/T G193S plus 24559662 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 38 0.34 123 by freq 17q21.2 keratin 25C 38508 rs17558995 KRT25D 162605 17 36206816 NM_181535 NP_853513 C/T A286T plus 24559786 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.14 123 by freq 17q21.2 keratin 25D 38509 rs17558995 KRT25D 162605 17 36206816 NM_181535 NP_853513 C/T A286T plus 24559786 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.05 123 by freq 17q21.2 keratin 25D 38510 rs17558995 KRT25D 162605 17 36206816 NM_181535 NP_853513 C/T A286T plus 24559786 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q21.2 keratin 25D 38511 rs17566772 KRT12 3859 17 36276907 NM_000223 NP_000214 A/G R20W plus 24560196 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 17q12 keratin 12 (Meesmann corneal dystrophy) 38512 rs17566772 KRT12 3859 17 36276907 NM_000223 NP_000214 A/G R20W plus 24560196 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q12 keratin 12 (Meesmann corneal dystrophy) 38513 rs17566772 KRT12 3859 17 36276907 NM_000223 NP_000214 A/G R20W plus 24560196 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 17q12 keratin 12 (Meesmann corneal dystrophy) 38514 rs17572019 PPARGC1B 133522 5 149192664 NM_133263 NP_573570 A/G V279I plus 24658267 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.13 123 by freq 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 38515 rs17572019 PPARGC1B 133522 5 149192664 NM_133263 NP_573570 A/G V279I plus 24658267 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 38516 rs17572019 PPARGC1B 133522 5 149192664 NM_133263 NP_573570 A/G V279I plus 24658267 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.07 123 by freq 5q33.1 "peroxisome proliferative activated receptor, gamma, coactivator 1, beta" 38517 rs17574839 NELL2 4753 12 43394747 NM_006159 NP_006150 C/T N347D plus 24474441 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 38518 rs17574839 NELL2 4753 12 43394747 NM_006159 NP_006150 C/T N347D plus 24474441 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 38519 rs17574839 NELL2 4753 12 43394747 NM_006159 NP_006150 C/T N347D plus 24474441 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q13.11-q13.12 NEL-like 2 (chicken) 38520 rs17581141 IGSF2 9398 1 117272078 NM_004258 NP_004249 A/G R518Q plus 24264945 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 1p13 "immunoglobulin superfamily, member 2" 38521 rs17581141 IGSF2 9398 1 117272078 NM_004258 NP_004249 A/G R518Q plus 24264945 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 1p13 "immunoglobulin superfamily, member 2" 38522 rs17581141 IGSF2 9398 1 117272078 NM_004258 NP_004249 A/G R518Q plus 24264945 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p13 "immunoglobulin superfamily, member 2" 38523 rs17583782 HLA-DMB 3109 6 33014694 NM_002118 NP_002109 C/T T28A plus 24169412 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38524 rs17583782 HLA-DMB 3109 6 33014694 NM_002118 NP_002109 C/T T28A plus 24169412 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38525 rs17583782 HLA-DMB 3109 6 33014694 NM_002118 NP_002109 C/T T28A plus 24169412 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38526 rs17594503 PRSS12 8492 4 119560824 NM_003619 NP_003610 C/T R833Q plus 24664709 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 4q28.1 "protease, serine, 12 (neurotrypsin, motopsin)" 38527 rs17594503 PRSS12 8492 4 119560824 NM_003619 NP_003610 C/T R833Q plus 24664709 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q28.1 "protease, serine, 12 (neurotrypsin, motopsin)" 38528 rs17594503 PRSS12 8492 4 119560824 NM_003619 NP_003610 C/T R833Q plus 24664709 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q28.1 "protease, serine, 12 (neurotrypsin, motopsin)" 38529 rs17597625 OR5I1 10798 11 55460437 NM_006637 NP_006628 C/T R6G plus 24565370 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 11q11 "olfactory receptor, family 5, subfamily I, member 1" 38530 rs17597625 OR5I1 10798 11 55460437 NM_006637 NP_006628 C/T R6G plus 24565370 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11q11 "olfactory receptor, family 5, subfamily I, member 1" 38531 rs17597625 OR5I1 10798 11 55460437 NM_006637 NP_006628 C/T R6G plus 24565370 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q11 "olfactory receptor, family 5, subfamily I, member 1" 38532 rs17598561 NMB 4828 15 82999610 NM_205858 NP_995580 C/T M120I plus 24365854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 15q22-qter neuromedin B 38533 rs17598561 NMB 4828 15 82999610 NM_205858 NP_995580 C/T M120I plus 24365854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q22-qter neuromedin B 38534 rs17598561 NMB 4828 15 82999610 NM_205858 NP_995580 C/T M120I plus 24365854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q22-qter neuromedin B 38535 rs17599091 MTP 4547 4 100870097 NM_000253 NP_000244 C/G Q244E plus 24366006 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 38536 rs17599091 MTP 4547 4 100870097 NM_000253 NP_000244 C/G Q244E plus 24366006 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 38537 rs17599091 MTP 4547 4 100870097 NM_000253 NP_000244 C/G Q244E plus 24366006 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q24 "microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 38538 rs17599639 DNAH9 1770 17 11452205 NM_001372 NP_001363 A/G R151H plus 24565947 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.07 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38539 rs17599639 DNAH9 1770 17 11452205 NM_001372 NP_001363 A/G R151H plus 24565947 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38540 rs17599639 DNAH9 1770 17 11452205 NM_001372 NP_001363 A/G R151H plus 24565947 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38541 rs17601580 ENPP3 5169 6 132103113 NM_005021 NP_005012 A/G S786N plus 24476640 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 6q22 ectonucleotide pyrophosphatase/phosphodiesterase 3 38542 rs17601580 ENPP3 5169 6 132103113 NM_005021 NP_005012 A/G S786N plus 24476640 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 6q22 ectonucleotide pyrophosphatase/phosphodiesterase 3 38543 rs17601580 ENPP3 5169 6 132103113 NM_005021 NP_005012 A/G S786N plus 24476640 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 6q22 ectonucleotide pyrophosphatase/phosphodiesterase 3 38544 rs17602729 AMPD1 270 1 114948099 NM_000036 NP_000027 A/G Q12X plus 24267495 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 1p13 adenosine monophosphate deaminase 1 (isoform M) 38545 rs17602729 AMPD1 270 1 114948099 NM_000036 NP_000027 A/G Q12X plus 24267495 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 1p13 adenosine monophosphate deaminase 1 (isoform M) 38546 rs17602729 AMPD1 270 1 114948099 NM_000036 NP_000027 A/G Q12X plus 24267495 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 1p13 adenosine monophosphate deaminase 1 (isoform M) 38547 rs17610219 NYD-SP14 83894 4 148182469 NM_031956 NP_114162 A/G H140Y plus 24175136 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.33 123 by freq 4q31.21 NYD-SP14 protein 38548 rs17610219 NYD-SP14 83894 4 148182469 NM_031956 NP_114162 A/G H140Y plus 24175136 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.39 123 by freq 4q31.21 NYD-SP14 protein 38549 rs17610219 NYD-SP14 83894 4 148182469 NM_031956 NP_114162 A/G H140Y plus 24175136 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 24 0.5 123 by freq 4q31.21 NYD-SP14 protein 38550 rs17610395 CPT1A 1374 11 68318904 NM_001876 NP_001867 C/T A275T plus 24567198 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 11q13.1-q13.2 carnitine palmitoyltransferase 1A (liver) 38551 rs17610395 CPT1A 1374 11 68318904 NM_001876 NP_001867 C/T A275T plus 24567198 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11q13.1-q13.2 carnitine palmitoyltransferase 1A (liver) 38552 rs17610395 CPT1A 1374 11 68318904 NM_001876 NP_001867 C/T A275T plus 24567198 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 11q13.1-q13.2 carnitine palmitoyltransferase 1A (liver) 38553 rs17611866 ZNF75A 7627 16 3307230 NM_153028 NP_694573 C/T V84A plus 24479598 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 by freq 16p13.11 zinc finger protein 75a 38554 rs17611866 ZNF75A 7627 16 3307230 NM_153028 NP_694573 C/T V84A plus 24479598 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 16p13.11 zinc finger protein 75a 38555 rs17611866 ZNF75A 7627 16 3307230 NM_153028 NP_694573 C/T V84A plus 24479598 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.1 123 by freq 16p13.11 zinc finger protein 75a 38556 rs17612126 IGHMBP2 3508 11 68462250 NM_002180 NP_002171 A/C T879K plus 24567692 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.28 123 by freq 11q13.2-q13.4 immunoglobulin mu binding protein 2 38557 rs17612126 IGHMBP2 3508 11 68462250 NM_002180 NP_002171 A/C T879K plus 24567692 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.05 123 by freq 11q13.2-q13.4 immunoglobulin mu binding protein 2 38558 rs17612126 IGHMBP2 3508 11 68462250 NM_002180 NP_002171 A/C T879K plus 24567692 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.22 123 by freq 11q13.2-q13.4 immunoglobulin mu binding protein 2 38559 rs17612341 GBA3 57733 4 22425539 NM_020973 NP_066024 C/G R213P plus 24367963 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 38560 rs17612341 GBA3 57733 4 22425539 NM_020973 NP_066024 C/G R213P plus 24367963 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 38561 rs17612341 GBA3 57733 4 22425539 NM_020973 NP_066024 C/G R213P plus 24367963 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 4p15.31 "glucosidase, beta, acid 3 (cytosolic)" 38562 rs17612861 DNAH9 1770 17 11776056 NM_001372 NP_001363 A/G D4036N plus 24567902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38563 rs17612861 DNAH9 1770 17 11776056 NM_001372 NP_001363 A/G D4036N plus 24567902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38564 rs17612861 DNAH9 1770 17 11776056 NM_001372 NP_001363 A/G D4036N plus 24567902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38565 rs17612861 DNAH9 1770 17 11776056 NM_004662 NP_004653 A/G D348N plus 24567902 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.39 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38566 rs17612861 DNAH9 1770 17 11776056 NM_004662 NP_004653 A/G D348N plus 24567902 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38567 rs17612861 DNAH9 1770 17 11776056 NM_004662 NP_004653 A/G D348N plus 24567902 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.2 123 by freq 17p12 "dynein, axonemal, heavy polypeptide 9" 38568 rs17614157 ANP32C 23520 4 165475858 NM_012403 NP_036535 C/T E204G plus 24176274 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 38569 rs17614157 ANP32C 23520 4 165475858 NM_012403 NP_036535 C/T E204G plus 24176274 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 38570 rs17614157 ANP32C 23520 4 165475858 NM_012403 NP_036535 C/T E204G plus 24176274 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 0.17 123 by freq 4q32.3 "acidic (leucine-rich) nuclear phosphoprotein 32 family, member C" 38571 rs17616661 ANKRD25 25959 19 11164554 NM_015493 NP_056308 A/G M401T plus 24679110 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 19p13.2 ankyrin repeat domain 25 38572 rs17616661 ANKRD25 25959 19 11164554 NM_015493 NP_056308 A/G M401T plus 24679110 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 19p13.2 ankyrin repeat domain 25 38573 rs17616661 ANKRD25 25959 19 11164554 NM_015493 NP_056308 A/G M401T plus 24679110 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 19p13.2 ankyrin repeat domain 25 38574 rs17617270 OR2V2 285659 5 180514649 NM_206880 NP_996763 C/T A34V plus 24679320 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 38575 rs17617270 OR2V2 285659 5 180514649 NM_206880 NP_996763 C/T A34V plus 24679320 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 38576 rs17617270 OR2V2 285659 5 180514649 NM_206880 NP_996763 C/T A34V plus 24679320 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q35.3 "olfactory receptor, family 2, subfamily V, member 2" 38577 rs17617321 HLA-DMB 3109 6 33014564 NM_002118 NP_002109 C/T S71N plus 24169407 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38578 rs17617321 HLA-DMB 3109 6 33014564 NM_002118 NP_002109 C/T S71N plus 24169407 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38579 rs17617321 HLA-DMB 3109 6 33014564 NM_002118 NP_002109 C/T S71N plus 24169407 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38580 rs17617333 HLA-DMB 3109 6 33014630 NM_002118 NP_002109 A/T D49V plus 24169409 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38581 rs17617333 HLA-DMB 3109 6 33014630 NM_002118 NP_002109 A/T D49V plus 24169409 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38582 rs17617333 HLA-DMB 3109 6 33014630 NM_002118 NP_002109 A/T D49V plus 24169409 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 6p21.3 "major histocompatibility complex, class II, DM beta" 38583 rs17618795 UNC93A 54346 6 167680113 NM_018974 NP_061847 A/G W151X plus 24468468 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 by freq 6q27 unc-93 homolog A (C. elegans) 38584 rs17618795 UNC93A 54346 6 167680113 NM_018974 NP_061847 A/G W151X plus 24468468 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 6q27 unc-93 homolog A (C. elegans) 38585 rs17618795 UNC93A 54346 6 167680113 NM_018974 NP_061847 A/G W151X plus 24468468 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 by freq 6q27 unc-93 homolog A (C. elegans) 38586 rs17625943 WDR17 116966 4 177473434 NM_170710 NP_733828 A/G A1215T plus 24279007 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.33 123 by freq 4q34 WD repeat domain 17 38587 rs17625943 WDR17 116966 4 177473434 NM_170710 NP_733828 A/G A1215T plus 24279007 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 4q34 WD repeat domain 17 38588 rs17625943 WDR17 116966 4 177473434 NM_170710 NP_733828 A/G A1215T plus 24279007 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 4q34 WD repeat domain 17 38589 rs17629834 MLF1 4291 3 159803405 NM_022443 NP_071888 A/C P226T plus 24381628 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 3q25.1 myeloid leukemia factor 1 38590 rs17629834 MLF1 4291 3 159803405 NM_022443 NP_071888 A/C P226T plus 24381628 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.28 123 by freq 3q25.1 myeloid leukemia factor 1 38591 rs17629834 MLF1 4291 3 159803405 NM_022443 NP_071888 A/C P226T plus 24381628 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 3q25.1 myeloid leukemia factor 1 38592 rs17632542 KLK3 354 19 56053569 NM_001648 NP_001639 C/T I179T plus 24582338 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 by freq 19q13.41 "kallikrein 3, (prostate specific antigen)" 38593 rs17632542 KLK3 354 19 56053569 NM_001648 NP_001639 C/T I179T plus 24582338 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 19q13.41 "kallikrein 3, (prostate specific antigen)" 38594 rs17632542 KLK3 354 19 56053569 NM_001648 NP_001639 C/T I179T plus 24582338 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.41 "kallikrein 3, (prostate specific antigen)" 38595 rs17632786 THBS1 7057 15 37669470 NM_003246 NP_003237 A/G N700S plus 24482845 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 15q15 thrombospondin 1 38596 rs17632786 THBS1 7057 15 37669470 NM_003246 NP_003237 A/G N700S plus 24482845 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 15q15 thrombospondin 1 38597 rs17632786 THBS1 7057 15 37669470 NM_003246 NP_003237 A/G N700S plus 24482845 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15 thrombospondin 1 38598 rs17635381 PCM1 5108 8 17861833 NM_006197 NP_006188 G/T A691S plus 24179717 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 8p22-p21.3 pericentriolar material 1 38599 rs17635381 PCM1 5108 8 17861833 NM_006197 NP_006188 G/T A691S plus 24179717 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 8p22-p21.3 pericentriolar material 1 38600 rs17635381 PCM1 5108 8 17861833 NM_006197 NP_006188 G/T A691S plus 24179717 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.42 123 by freq 8p22-p21.3 pericentriolar material 1 38601 rs17641078 DMRT2 10655 9 1046959 NM_181872 NP_870987 C/G E458Q plus 24683596 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 2 38602 rs17641078 DMRT2 10655 9 1046959 NM_181872 NP_870987 C/G E458Q plus 24683596 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 2 38603 rs17641078 DMRT2 10655 9 1046959 NM_181872 NP_870987 C/G E458Q plus 24683596 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.11 123 by freq 9p24.3 doublesex and mab-3 related transcription factor 2 38604 rs17646069 DGKH 160851 13 41701263 NM_178009 NP_821077 C/T V1201A plus 24181447 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 13q13.3 "diacylglycerol kinase, eta" 38605 rs17646069 DGKH 160851 13 41701263 NM_178009 NP_821077 C/T V1201A plus 24181447 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 13q13.3 "diacylglycerol kinase, eta" 38606 rs17646069 DGKH 160851 13 41701263 NM_178009 NP_821077 C/T V1201A plus 24181447 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 13q13.3 "diacylglycerol kinase, eta" 38607 rs17646457 FLRT2 23768 14 85159068 NM_013231 NP_037363 A/G R486Q plus 24585143 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 14q24-q32 fibronectin leucine rich transmembrane protein 2 38608 rs17646457 FLRT2 23768 14 85159068 NM_013231 NP_037363 A/G R486Q plus 24585143 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q24-q32 fibronectin leucine rich transmembrane protein 2 38609 rs17646457 FLRT2 23768 14 85159068 NM_013231 NP_037363 A/G R486Q plus 24585143 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 14q24-q32 fibronectin leucine rich transmembrane protein 2 38610 rs17647806 SSFA2 6744 2 182606380 NM_006751 NP_006742 C/T P836L plus 24274682 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 2q32.1 sperm specific antigen 2 38611 rs17647806 SSFA2 6744 2 182606380 NM_006751 NP_006742 C/T P836L plus 24274682 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 2q32.1 sperm specific antigen 2 38612 rs17647806 SSFA2 6744 2 182606380 NM_006751 NP_006742 C/T P836L plus 24274682 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q32.1 sperm specific antigen 2 38613 rs17648128 COLM 342035 15 49477064 NM_181789 NP_861454 A/G S141N plus 24182124 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 15q15.3 collomin 38614 rs17648128 COLM 342035 15 49477064 NM_181789 NP_861454 A/G S141N plus 24182124 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 15q15.3 collomin 38615 rs17648128 COLM 342035 15 49477064 NM_181789 NP_861454 A/G S141N plus 24182124 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 by freq 15q15.3 collomin 38616 rs17650440 MYO5C 55930 15 50291328 NM_018728 NP_061198 A/G P1396L plus 24182899 1371 PERLEGEN AFD_EUR_PANEL European American (24) 38 0.03 123 by freq 15q21 myosin VC 38617 rs17650440 MYO5C 55930 15 50291328 NM_018728 NP_061198 A/G P1396L plus 24182899 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q21 myosin VC 38618 rs17650440 MYO5C 55930 15 50291328 NM_018728 NP_061198 A/G P1396L plus 24182899 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.05 123 by freq 15q21 myosin VC 38619 rs17651549 MAPT 4137 17 41417115 NM_016835 NP_058519 C/T R370W plus 24573464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.25 123 by freq 17q21.1 microtubule-associated protein tau 38620 rs17651549 MAPT 4137 17 41417115 NM_016835 NP_058519 C/T R370W plus 24573464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 17q21.1 microtubule-associated protein tau 38621 rs17651549 MAPT 4137 17 41417115 NM_016835 NP_058519 C/T R370W plus 24573464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.1 microtubule-associated protein tau 38622 rs17653374 APIN 54959 4 71249249 NM_017855 NP_060325 C/T I96T plus 24384086 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 4q13.3 APin protein 38623 rs17653374 APIN 54959 4 71249249 NM_017855 NP_060325 C/T I96T plus 24384086 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 4q13.3 APin protein 38624 rs17653374 APIN 54959 4 71249249 NM_017855 NP_060325 C/T I96T plus 24384086 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.2 123 by freq 4q13.3 APin protein 38625 rs17656320 GRM7 2917 3 7469417 NM_000844 NP_000835 A/T Y433F plus 24285416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38626 rs17656320 GRM7 2917 3 7469417 NM_000844 NP_000835 A/T Y433F plus 24285416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38627 rs17656320 GRM7 2917 3 7469417 NM_000844 NP_000835 A/T Y433F plus 24285416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38628 rs17656320 GRM7 2917 3 7469417 NM_181874 NP_870989 A/T Y433F plus 24285416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38629 rs17656320 GRM7 2917 3 7469417 NM_181874 NP_870989 A/T Y433F plus 24285416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38630 rs17656320 GRM7 2917 3 7469417 NM_181874 NP_870989 A/T Y433F plus 24285416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38631 rs17656320 GRM7 2917 3 7469417 NM_181875 NP_870990 A/T Y433F plus 24285416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38632 rs17656320 GRM7 2917 3 7469417 NM_181875 NP_870990 A/T Y433F plus 24285416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38633 rs17656320 GRM7 2917 3 7469417 NM_181875 NP_870990 A/T Y433F plus 24285416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.15 123 by freq 3p26.1-p25.1 "glutamate receptor, metabotropic 7" 38634 rs17656599 COBL 23242 7 50871425 NM_015198 NP_056013 A/G P526L plus 24685152 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 38635 rs17656599 COBL 23242 7 50871425 NM_015198 NP_056013 A/G P526L plus 24685152 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 38636 rs17656599 COBL 23242 7 50871425 NM_015198 NP_056013 A/G P526L plus 24685152 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 7p12.2-p12.1 cordon-bleu homolog (mouse) 38637 rs17659179 MYO5B 4645 18 45765111 XM_371116 XP_371116 A/C K794N plus 24686019 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 18q21 myosin VB 38638 rs17659179 MYO5B 4645 18 45765111 XM_371116 XP_371116 A/C K794N plus 24686019 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 18q21 myosin VB 38639 rs17659179 MYO5B 4645 18 45765111 XM_371116 XP_371116 A/C K794N plus 24686019 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18q21 myosin VB 38640 rs17660042 SLC36A3 285641 5 150647139 NM_181774 NP_861439 C/T R190H plus 24686297 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 38641 rs17660042 SLC36A3 285641 5 150647139 NM_181774 NP_861439 C/T R190H plus 24686297 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 38642 rs17660042 SLC36A3 285641 5 150647139 NM_181774 NP_861439 C/T R190H plus 24686297 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q33.1 "solute carrier family 36 (proton/amino acid symporter), member 3" 38643 rs17667603 ST14 6768 11 129571471 NM_021978 NP_068813 A/C R381S plus 24576975 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 11q24-q25 "suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin)" 38644 rs17667603 ST14 6768 11 129571471 NM_021978 NP_068813 A/C R381S plus 24576975 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 11q24-q25 "suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin)" 38645 rs17667603 ST14 6768 11 129571471 NM_021978 NP_068813 A/C R381S plus 24576975 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 11q24-q25 "suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin)" 38646 rs17670506 CRYBB3 1417 22 23924403 NM_004076 NP_004067 A/G R105Q plus 24577938 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.23 "crystallin, beta B3" 38647 rs17670506 CRYBB3 1417 22 23924403 NM_004076 NP_004067 A/G R105Q plus 24577938 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 22q11.23 "crystallin, beta B3" 38648 rs17670506 CRYBB3 1417 22 23924403 NM_004076 NP_004067 A/G R105Q plus 24577938 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 22q11.23 "crystallin, beta B3" 38649 rs17673268 DOCK8 81704 9 358128 NM_203447 NP_982272 C/T A529V plus 24287443 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 9p24.3 dedicator of cytokinesis 8 38650 rs17673268 DOCK8 81704 9 358128 NM_203447 NP_982272 C/T A529V plus 24287443 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 9p24.3 dedicator of cytokinesis 8 38651 rs17673268 DOCK8 81704 9 358128 NM_203447 NP_982272 C/T A529V plus 24287443 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 9p24.3 dedicator of cytokinesis 8 38652 rs17677811 MGA 23269 15 39808804 XM_031689 XP_031689 C/T C1270R plus 24388581 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 15q15 MAX gene associated 38653 rs17677811 MGA 23269 15 39808804 XM_031689 XP_031689 C/T C1270R plus 24388581 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 15q15 MAX gene associated 38654 rs17677811 MGA 23269 15 39808804 XM_031689 XP_031689 C/T C1270R plus 24388581 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q15 MAX gene associated 38655 rs17677991 MGA 23269 15 39819675 XM_031689 XP_031689 C/G P1572A plus 24388639 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 15q15 MAX gene associated 38656 rs17677991 MGA 23269 15 39819675 XM_031689 XP_031689 C/G P1572A plus 24388639 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.33 123 by freq 15q15 MAX gene associated 38657 rs17677991 MGA 23269 15 39819675 XM_031689 XP_031689 C/G P1572A plus 24388639 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 15q15 MAX gene associated 38658 rs17678945 KRT1 3848 12 51356441 NM_006121 NP_006112 A/C A454S plus 24388958 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 38659 rs17678945 KRT1 3848 12 51356441 NM_006121 NP_006112 A/C A454S plus 24388958 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 38660 rs17678945 KRT1 3848 12 51356441 NM_006121 NP_006112 A/C A454S plus 24388958 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12q12-q13 keratin 1 (epidermolytic hyperkeratosis) 38661 rs17679445 PNPO 55163 17 43377064 NM_018129 NP_060599 A/G R116Q plus 24579075 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.32 pyridoxine-5'-phosphate oxidase 38662 rs17679445 PNPO 55163 17 43377064 NM_018129 NP_060599 A/G R116Q plus 24579075 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q21.32 pyridoxine-5'-phosphate oxidase 38663 rs17679445 PNPO 55163 17 43377064 NM_018129 NP_060599 A/G R116Q plus 24579075 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.32 pyridoxine-5'-phosphate oxidase 38664 rs17680881 TACC3 10460 4 1700209 NM_006342 NP_006333 A/G G514E plus 24379868 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 4p16.3 "transforming, acidic coiled-coil containing protein 3" 38665 rs17680881 TACC3 10460 4 1700209 NM_006342 NP_006333 A/G G514E plus 24379868 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 4p16.3 "transforming, acidic coiled-coil containing protein 3" 38666 rs17680881 TACC3 10460 4 1700209 NM_006342 NP_006333 A/G G514E plus 24379868 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 4p16.3 "transforming, acidic coiled-coil containing protein 3" 38667 rs17681684 GLP2R 9340 17 9733493 NM_004246 NP_004237 A/G D470N plus 24589557 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 17p13.3 glucagon-like peptide 2 receptor 38668 rs17681684 GLP2R 9340 17 9733493 NM_004246 NP_004237 A/G D470N plus 24589557 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 17p13.3 glucagon-like peptide 2 receptor 38669 rs17681684 GLP2R 9340 17 9733493 NM_004246 NP_004237 A/G D470N plus 24589557 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 glucagon-like peptide 2 receptor 38670 rs17681908 IQGAP2 10788 5 76027176 NM_006633 NP_006624 C/T R1379W plus 24189742 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 38671 rs17681908 IQGAP2 10788 5 76027176 NM_006633 NP_006624 C/T R1379W plus 24189742 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 38672 rs17681908 IQGAP2 10788 5 76027176 NM_006633 NP_006624 C/T R1379W plus 24189742 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 5q13.3-q14.1 IQ motif containing GTPase activating protein 2 38673 rs17683011 SLC5A1 6523 22 30770500 NM_000343 NP_000334 A/G N51S plus 24590009 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38674 rs17683011 SLC5A1 6523 22 30770500 NM_000343 NP_000334 A/G N51S plus 24590009 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38675 rs17683011 SLC5A1 6523 22 30770500 NM_000343 NP_000334 A/G N51S plus 24590009 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38676 rs17683288 ARHGEF10 9639 8 1864887 NM_014629 NP_055444 G/T S761A plus 24690432 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 38677 rs17683288 ARHGEF10 9639 8 1864887 NM_014629 NP_055444 G/T S761A plus 24690432 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 38678 rs17683288 ARHGEF10 9639 8 1864887 NM_014629 NP_055444 G/T S761A plus 24690432 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 8p23 Rho guanine nucleotide exchange factor (GEF) 10 38679 rs17683306 FSTL4 23105 5 132680180 XM_048786 XP_048786 C/T R158H plus 24380645 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 5q31.1 follistatin-like 4 38680 rs17683306 FSTL4 23105 5 132680180 XM_048786 XP_048786 C/T R158H plus 24380645 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 5q31.1 follistatin-like 4 38681 rs17683306 FSTL4 23105 5 132680180 XM_048786 XP_048786 C/T R158H plus 24380645 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 5q31.1 follistatin-like 4 38682 rs17683430 SLC5A1 6523 22 30812254 NM_000343 NP_000334 A/G A411T plus 24590149 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38683 rs17683430 SLC5A1 6523 22 30812254 NM_000343 NP_000334 A/G A411T plus 24590149 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38684 rs17683430 SLC5A1 6523 22 30812254 NM_000343 NP_000334 A/G A411T plus 24590149 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q12.3 "solute carrier family 5 (sodium/glucose cotransporter), member 1" 38685 rs17684521 ABCA9 10350 17 64529525 NM_080283 NP_525022 C/T N785S plus 24590510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38686 rs17684521 ABCA9 10350 17 64529525 NM_080283 NP_525022 C/T N785S plus 24590510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38687 rs17684521 ABCA9 10350 17 64529525 NM_080283 NP_525022 C/T N785S plus 24590510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38688 rs17684521 ABCA9 10350 17 64529525 NM_172386 NP_759018 C/T N785S plus 24590510 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38689 rs17684521 ABCA9 10350 17 64529525 NM_172386 NP_759018 C/T N785S plus 24590510 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38690 rs17684521 ABCA9 10350 17 64529525 NM_172386 NP_759018 C/T N785S plus 24590510 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q24.2 "ATP-binding cassette, sub-family A (ABC1), member 9" 38691 rs17685098 TMPRSS9 360200 19 2347611 NM_182973 NP_892018 C/T R73W plus 24190820 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.15 123 by freq 19p13.3 transmembrane serine protease 9 38692 rs17685098 TMPRSS9 360200 19 2347611 NM_182973 NP_892018 C/T R73W plus 24190820 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.3 123 by freq 19p13.3 transmembrane serine protease 9 38693 rs17685098 TMPRSS9 360200 19 2347611 NM_182973 NP_892018 C/T R73W plus 24190820 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.39 123 by freq 19p13.3 transmembrane serine protease 9 38694 rs17685621 PCDHB6 56130 5 140512261 NM_018939 NP_061762 C/T Y747H plus 24381416 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.02 123 by freq 5q31 protocadherin beta 6 38695 rs17685621 PCDHB6 56130 5 140512261 NM_018939 NP_061762 C/T Y747H plus 24381416 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 by freq 5q31 protocadherin beta 6 38696 rs17685621 PCDHB6 56130 5 140512261 NM_018939 NP_061762 C/T Y747H plus 24381416 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 5q31 protocadherin beta 6 38697 rs17686210 OR10S1 219873 11 123353331 XM_166780 XP_166780 C/T K114R plus 24591078 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38698 rs17686210 OR10S1 219873 11 123353331 XM_166780 XP_166780 C/T K114R plus 24591078 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38699 rs17686210 OR10S1 219873 11 123353331 XM_166780 XP_166780 C/T K114R plus 24591078 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38700 rs17686437 OTOR 56914 20 16677048 NM_020157 NP_064542 C/T M1T plus 24591154 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 20p12.1-p11.23 otoraplin 38701 rs17686437 OTOR 56914 20 16677048 NM_020157 NP_064542 C/T M1T plus 24591154 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 20p12.1-p11.23 otoraplin 38702 rs17686437 OTOR 56914 20 16677048 NM_020157 NP_064542 C/T M1T plus 24591154 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p12.1-p11.23 otoraplin 38703 rs17686569 ABCA5 23461 17 64802435 NM_018672 NP_061142 C/T Q484R plus 24591202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38704 rs17686569 ABCA5 23461 17 64802435 NM_018672 NP_061142 C/T Q484R plus 24591202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38705 rs17686569 ABCA5 23461 17 64802435 NM_018672 NP_061142 C/T Q484R plus 24591202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38706 rs17686569 ABCA5 23461 17 64802435 NM_172232 NP_758424 C/T Q484R plus 24591202 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38707 rs17686569 ABCA5 23461 17 64802435 NM_172232 NP_758424 C/T Q484R plus 24591202 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38708 rs17686569 ABCA5 23461 17 64802435 NM_172232 NP_758424 C/T Q484R plus 24591202 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 17q24.3 "ATP-binding cassette, sub-family A (ABC1), member 5" 38709 rs17688567 C1QDC1 65981 12 30797625 NM_023925 NP_076414 A/G P114S plus 24390326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 12p11 C1q domain containing 1 38710 rs17688567 C1QDC1 65981 12 30797625 NM_023925 NP_076414 A/G P114S plus 24390326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12p11 C1q domain containing 1 38711 rs17688567 C1QDC1 65981 12 30797625 NM_023925 NP_076414 A/G P114S plus 24390326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p11 C1q domain containing 1 38712 rs17688567 C1QDC1 65981 12 30797625 NM_032156 NP_115532 A/G P114S plus 24390326 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 12p11 C1q domain containing 1 38713 rs17688567 C1QDC1 65981 12 30797625 NM_032156 NP_115532 A/G P114S plus 24390326 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 12p11 C1q domain containing 1 38714 rs17688567 C1QDC1 65981 12 30797625 NM_032156 NP_115532 A/G P114S plus 24390326 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 12p11 C1q domain containing 1 38715 rs17688627 KRT6L 338785 12 51503256 NM_175834 NP_787028 A/G A393V plus 24390344 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.22 123 by freq 12q13.13 keratin 6L 38716 rs17688627 KRT6L 338785 12 51503256 NM_175834 NP_787028 A/G A393V plus 24390344 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 12q13.13 keratin 6L 38717 rs17688627 KRT6L 338785 12 51503256 NM_175834 NP_787028 A/G A393V plus 24390344 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 42 1 123 by freq 12q13.13 keratin 6L 38718 rs17689215 KIF13A 63971 6 17881769 NM_022113 NP_071396 C/T M1415V plus 24680854 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 6p23 kinesin family member 13A 38719 rs17689215 KIF13A 63971 6 17881769 NM_022113 NP_071396 C/T M1415V plus 24680854 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 6p23 kinesin family member 13A 38720 rs17689215 KIF13A 63971 6 17881769 NM_022113 NP_071396 C/T M1415V plus 24680854 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 6p23 kinesin family member 13A 38721 rs17690195 MYH13 8735 17 10159838 NM_003802 NP_003793 C/T R1294Q plus 24592399 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 38722 rs17690195 MYH13 8735 17 10159838 NM_003802 NP_003793 C/T R1294Q plus 24592399 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 38723 rs17690195 MYH13 8735 17 10159838 NM_003802 NP_003793 C/T R1294Q plus 24592399 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.19 123 by freq 17p13 "myosin, heavy polypeptide 13, skeletal muscle" 38724 rs17690844 MTUS1 57509 8 17656239 XM_372031 XP_372031 G/T K453T plus 24179353 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 8p22 mitochondrial tumor suppressor 1 38725 rs17690844 MTUS1 57509 8 17656239 XM_372031 XP_372031 G/T K453T plus 24179353 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 8p22 mitochondrial tumor suppressor 1 38726 rs17690844 MTUS1 57509 8 17656239 XM_372031 XP_372031 G/T K453T plus 24179353 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 8p22 mitochondrial tumor suppressor 1 38727 rs17690899 PLA2G4D 283748 15 40150304 NM_178034 NP_828848 C/G A142G plus 24391096 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38728 rs17690899 PLA2G4D 283748 15 40150304 NM_178034 NP_828848 C/G A142G plus 24391096 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38729 rs17690899 PLA2G4D 283748 15 40150304 NM_178034 NP_828848 C/G A142G plus 24391096 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38730 rs17694549 CCDC2 80173 9 26999100 NM_025103 NP_079379 C/T F59L plus 24692372 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 9p21.1 coiled-coil domain containing 2 38731 rs17694549 CCDC2 80173 9 26999100 NM_025103 NP_079379 C/T F59L plus 24692372 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.07 123 by freq 9p21.1 coiled-coil domain containing 2 38732 rs17694549 CCDC2 80173 9 26999100 NM_025103 NP_079379 C/T F59L plus 24692372 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 9p21.1 coiled-coil domain containing 2 38733 rs17694739 SVIL 6840 10 29794541 NM_003174 NP_003165 A/G A1615V plus 24692438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 10p11.2 supervillin 38734 rs17694739 SVIL 6840 10 29794541 NM_003174 NP_003165 A/G A1615V plus 24692438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 10p11.2 supervillin 38735 rs17694739 SVIL 6840 10 29794541 NM_003174 NP_003165 A/G A1615V plus 24692438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10p11.2 supervillin 38736 rs17694739 SVIL 6840 10 29794541 NM_021738 NP_068506 A/G A2041V plus 24692438 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 10p11.2 supervillin 38737 rs17694739 SVIL 6840 10 29794541 NM_021738 NP_068506 A/G A2041V plus 24692438 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 10p11.2 supervillin 38738 rs17694739 SVIL 6840 10 29794541 NM_021738 NP_068506 A/G A2041V plus 24692438 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 10p11.2 supervillin 38739 rs17697947 ICAM3 3385 19 10310514 NM_002162 NP_002153 C/T I63V plus 24191456 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19p13.3-p13.2 intercellular adhesion molecule 3 38740 rs17697947 ICAM3 3385 19 10310514 NM_002162 NP_002153 C/T I63V plus 24191456 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19p13.3-p13.2 intercellular adhesion molecule 3 38741 rs17697947 ICAM3 3385 19 10310514 NM_002162 NP_002153 C/T I63V plus 24191456 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 19p13.3-p13.2 intercellular adhesion molecule 3 38742 rs17699678 NALP2 55655 19 60185540 NM_017852 NP_060322 C/T T221M plus 24694076 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 38743 rs17699678 NALP2 55655 19 60185540 NM_017852 NP_060322 C/T T221M plus 24694076 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 38744 rs17699678 NALP2 55655 19 60185540 NM_017852 NP_060322 C/T T221M plus 24694076 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.42 "NACHT, leucine rich repeat and PYD containing 2" 38745 rs17704912 MYO18B 84700 22 24555866 NM_032608 NP_115997 C/G W1037S plus 24582088 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 22q11.2-q12.1 myosin XVIIIB 38746 rs17704912 MYO18B 84700 22 24555866 NM_032608 NP_115997 C/G W1037S plus 24582088 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 22q11.2-q12.1 myosin XVIIIB 38747 rs17704912 MYO18B 84700 22 24555866 NM_032608 NP_115997 C/G W1037S plus 24582088 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.2-q12.1 myosin XVIIIB 38748 rs17705005 SPINK5 11005 5 147486786 NM_006846 NP_006837 A/G H972R plus 24682480 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38749 rs17705005 SPINK5 11005 5 147486786 NM_006846 NP_006837 A/G H972R plus 24682480 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 1 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38750 rs17705005 SPINK5 11005 5 147486786 NM_006846 NP_006837 A/G H972R plus 24682480 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38751 rs17707331 SLC26A8 116369 6 36068368 NM_052961 NP_443193 C/T S230N plus 24385018 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 6p21 "solute carrier family 26, member 8" 38752 rs17707331 SLC26A8 116369 6 36068368 NM_052961 NP_443193 C/T S230N plus 24385018 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 6p21 "solute carrier family 26, member 8" 38753 rs17707331 SLC26A8 116369 6 36068368 NM_052961 NP_443193 C/T S230N plus 24385018 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.09 123 by freq 6p21 "solute carrier family 26, member 8" 38754 rs17707947 MYO10 4651 5 16930744 NM_012334 NP_036466 C/T V32I plus 24183254 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 5p15.1-p14.3 myosin X 38755 rs17707947 MYO10 4651 5 16930744 NM_012334 NP_036466 C/T V32I plus 24183254 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5p15.1-p14.3 myosin X 38756 rs17707947 MYO10 4651 5 16930744 NM_012334 NP_036466 C/T V32I plus 24183254 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.13 123 by freq 5p15.1-p14.3 myosin X 38757 rs17710008 MYCT1 80177 6 153135149 NM_025107 NP_079383 A/G G119S plus 24495940 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 6q25.1 myc target 1 38758 rs17710008 MYCT1 80177 6 153135149 NM_025107 NP_079383 A/G G119S plus 24495940 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 6q25.1 myc target 1 38759 rs17710008 MYCT1 80177 6 153135149 NM_025107 NP_079383 A/G G119S plus 24495940 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 0.05 123 by freq 6q25.1 myc target 1 38760 rs17711239 NALP13 126204 19 61111075 NM_176810 NP_789780 C/T N781S plus 24584179 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 38761 rs17711239 NALP13 126204 19 61111075 NM_176810 NP_789780 C/T N781S plus 24584179 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 38762 rs17711239 NALP13 126204 19 61111075 NM_176810 NP_789780 C/T N781S plus 24584179 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 13" 38763 rs17711777 PINX1 54984 8 10660650 NM_017884 NP_060354 C/T T220A plus 24394406 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8p23 PIN2-interacting protein 1 38764 rs17711777 PINX1 54984 8 10660650 NM_017884 NP_060354 C/T T220A plus 24394406 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 8p23 PIN2-interacting protein 1 38765 rs17711777 PINX1 54984 8 10660650 NM_017884 NP_060354 C/T T220A plus 24394406 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8p23 PIN2-interacting protein 1 38766 rs17712523 CDH23 64072 10 73207620 NM_022124 NP_071407 A/G V1675I plus 24584606 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 10q21-q22 cadherin-like 23 38767 rs17712523 CDH23 64072 10 73207620 NM_022124 NP_071407 A/G V1675I plus 24584606 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10q21-q22 cadherin-like 23 38768 rs17712523 CDH23 64072 10 73207620 NM_022124 NP_071407 A/G V1675I plus 24584606 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 10q21-q22 cadherin-like 23 38769 rs17713154 SLC26A8 116369 6 36075750 NM_052961 NP_443193 C/T I148V plus 24385126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 6p21 "solute carrier family 26, member 8" 38770 rs17713154 SLC26A8 116369 6 36075750 NM_052961 NP_443193 C/T I148V plus 24385126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 6p21 "solute carrier family 26, member 8" 38771 rs17713154 SLC26A8 116369 6 36075750 NM_052961 NP_443193 C/T I148V plus 24385126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 6p21 "solute carrier family 26, member 8" 38772 rs17713154 SLC26A8 116369 6 36075750 NM_138718 NP_619732 C/T I148V plus 24385126 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 6p21 "solute carrier family 26, member 8" 38773 rs17713154 SLC26A8 116369 6 36075750 NM_138718 NP_619732 C/T I148V plus 24385126 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.14 123 by freq 6p21 "solute carrier family 26, member 8" 38774 rs17713154 SLC26A8 116369 6 36075750 NM_138718 NP_619732 C/T I148V plus 24385126 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 6p21 "solute carrier family 26, member 8" 38775 rs17713875 NALP5 126206 19 61235794 NM_153447 NP_703148 G/T R761L plus 24585058 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 38776 rs17713875 NALP5 126206 19 61235794 NM_153447 NP_703148 G/T R761L plus 24585058 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 38777 rs17713875 NALP5 126206 19 61235794 NM_153447 NP_703148 G/T R761L plus 24585058 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19q13.43 "NACHT, leucine rich repeat and PYD containing 5" 38778 rs17714046 TRIM41 90933 5 180594586 NM_201627 NP_963921 C/T Y506H plus 24385424 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 5q35.3 tripartite motif-containing 41 38779 rs17714046 TRIM41 90933 5 180594586 NM_201627 NP_963921 C/T Y506H plus 24385424 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 5q35.3 tripartite motif-containing 41 38780 rs17714046 TRIM41 90933 5 180594586 NM_201627 NP_963921 C/T Y506H plus 24385424 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 5q35.3 tripartite motif-containing 41 38781 rs17714854 EME1 146956 17 45807755 NM_152463 NP_689676 C/T F63L plus 24595122 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 38782 rs17714854 EME1 146956 17 45807755 NM_152463 NP_689676 C/T F63L plus 24595122 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 38783 rs17714854 EME1 146956 17 45807755 NM_152463 NP_689676 C/T F63L plus 24595122 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.33 essential meiotic endonuclease 1 homolog 1 (S. pombe) 38784 rs17718987 CD207 50489 2 70972591 NM_015717 NP_056532 C/G Q136E plus 24285651 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.31 123 by freq 2p13 "CD207 antigen, langerin" 38785 rs17718987 CD207 50489 2 70972591 NM_015717 NP_056532 C/G Q136E plus 24285651 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 2p13 "CD207 antigen, langerin" 38786 rs17718987 CD207 50489 2 70972591 NM_015717 NP_056532 C/G Q136E plus 24285651 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2p13 "CD207 antigen, langerin" 38787 rs17719289 CD22 933 19 40524663 NM_001771 NP_001762 A/G S664G plus 24194948 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 19q13.1 CD22 antigen 38788 rs17719289 CD22 933 19 40524663 NM_001771 NP_001762 A/G S664G plus 24194948 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 19q13.1 CD22 antigen 38789 rs17719289 CD22 933 19 40524663 NM_001771 NP_001762 A/G S664G plus 24194948 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 19q13.1 CD22 antigen 38790 rs17719808 UBR1 197131 15 41043483 NM_174916 NP_777576 C/T T1548A plus 24395257 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 15q13 ubiquitin protein ligase E3 component n-recognin 1 38791 rs17719808 UBR1 197131 15 41043483 NM_174916 NP_777576 C/T T1548A plus 24395257 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q13 ubiquitin protein ligase E3 component n-recognin 1 38792 rs17719808 UBR1 197131 15 41043483 NM_174916 NP_777576 C/T T1548A plus 24395257 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q13 ubiquitin protein ligase E3 component n-recognin 1 38793 rs17723260 EFNA3 1944 1 151871736 NM_004952 NP_004943 A/G V190M plus 24287108 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 1q21-q22 ephrin-A3 38794 rs17723260 EFNA3 1944 1 151871736 NM_004952 NP_004943 A/G V190M plus 24287108 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 1q21-q22 ephrin-A3 38795 rs17723260 EFNA3 1944 1 151871736 NM_004952 NP_004943 A/G V190M plus 24287108 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 1q21-q22 ephrin-A3 38796 rs17728850 ACTL7B 10880 9 108697764 NM_006686 NP_006677 A/G M1T plus 24698414 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 9q31 actin-like 7B 38797 rs17728850 ACTL7B 10880 9 108697764 NM_006686 NP_006677 A/G M1T plus 24698414 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 9q31 actin-like 7B 38798 rs17728850 ACTL7B 10880 9 108697764 NM_006686 NP_006677 A/G M1T plus 24698414 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 9q31 actin-like 7B 38799 rs17732496 TXNDC2 84203 18 9877857 NM_032243 NP_115619 A/G A394T plus 24599140 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38800 rs17732496 TXNDC2 84203 18 9877857 NM_032243 NP_115619 A/G A394T plus 24599140 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.07 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38801 rs17732496 TXNDC2 84203 18 9877857 NM_032243 NP_115619 A/G A394T plus 24599140 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38802 rs17736370 KCNG4 93107 16 82814120 NM_172347 NP_758857 C/T C255Y plus 24499318 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 38803 rs17736370 KCNG4 93107 16 82814120 NM_172347 NP_758857 C/T C255Y plus 24499318 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 38804 rs17736370 KCNG4 93107 16 82814120 NM_172347 NP_758857 C/T C255Y plus 24499318 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 16q24.1 "potassium voltage-gated channel, subfamily G, member 4" 38805 rs17737019 KRTHA7 8688 17 36830706 NM_003770 NP_003761 A/G P427L plus 24587271 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 38806 rs17737019 KRTHA7 8688 17 36830706 NM_003770 NP_003761 A/G P427L plus 24587271 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 38807 rs17737019 KRTHA7 8688 17 36830706 NM_003770 NP_003761 A/G P427L plus 24587271 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q12-q21 "keratin, hair, acidic, 7" 38808 rs17738527 SEC14L4 284904 22 29213048 NM_174977 NP_777637 C/T E211K plus 24587774 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.23 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38809 rs17738527 SEC14L4 284904 22 29213048 NM_174977 NP_777637 C/T E211K plus 24587774 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38810 rs17738527 SEC14L4 284904 22 29213048 NM_174977 NP_777637 C/T E211K plus 24587774 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38811 rs17738540 SEC14L4 284904 22 29213081 NM_174977 NP_777637 C/T V200M plus 24587780 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38812 rs17738540 SEC14L4 284904 22 29213081 NM_174977 NP_777637 C/T V200M plus 24587780 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38813 rs17738540 SEC14L4 284904 22 29213081 NM_174977 NP_777637 C/T V200M plus 24587780 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 22q12.2 SEC14-like 4 (S. cerevisiae) 38814 rs17740066 STXBP5L 9515 3 122582973 XM_045911 XP_045911 A/G V931I plus 24289063 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38815 rs17740066 STXBP5L 9515 3 122582973 XM_045911 XP_045911 A/G V931I plus 24289063 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38816 rs17740066 STXBP5L 9515 3 122582973 XM_045911 XP_045911 A/G V931I plus 24289063 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 3q13.33-q21.1 syntaxin binding protein 5-like 38817 rs17740607 HDC 3067 15 48342836 NM_002112 NP_002103 A/G T31M plus 24398534 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 15q21-q22 histidine decarboxylase 38818 rs17740607 HDC 3067 15 48342836 NM_002112 NP_002103 A/G T31M plus 24398534 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 15q21-q22 histidine decarboxylase 38819 rs17740607 HDC 3067 15 48342836 NM_002112 NP_002103 A/G T31M plus 24398534 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 15q21-q22 histidine decarboxylase 38820 rs17741424 PNUTL2 5414 17 53953990 NM_004574 NP_004565 A/T E311V plus 24588740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38821 rs17741424 PNUTL2 5414 17 53953990 NM_004574 NP_004565 A/T E311V plus 24588740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38822 rs17741424 PNUTL2 5414 17 53953990 NM_004574 NP_004565 A/T E311V plus 24588740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38823 rs17741424 PNUTL2 5414 17 53953990 NM_080416 NP_536341 A/T E292V plus 24588740 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38824 rs17741424 PNUTL2 5414 17 53953990 NM_080416 NP_536341 A/T E292V plus 24588740 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38825 rs17741424 PNUTL2 5414 17 53953990 NM_080416 NP_536341 A/T E292V plus 24588740 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 by freq 17q22-q23 peanut-like 2 (Drosophila) 38826 rs17742683 MPP3 4356 17 39234600 NM_001932 NP_001923 C/T R585G plus 24589152 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 17q12-q21 "membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)" 38827 rs17742683 MPP3 4356 17 39234600 NM_001932 NP_001923 C/T R585G plus 24589152 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 17q12-q21 "membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)" 38828 rs17742683 MPP3 4356 17 39234600 NM_001932 NP_001923 C/T R585G plus 24589152 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q12-q21 "membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)" 38829 rs17743887 DGCR14 8220 22 17499419 NM_022719 NP_073210 C/T V336M plus 24701588 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.21 DiGeorge syndrome critical region gene 14 38830 rs17743887 DGCR14 8220 22 17499419 NM_022719 NP_073210 C/T V336M plus 24701588 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 22q11.21 DiGeorge syndrome critical region gene 14 38831 rs17743887 DGCR14 8220 22 17499419 NM_022719 NP_073210 C/T V336M plus 24701588 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.21 DiGeorge syndrome critical region gene 14 38832 rs17744245 SYTL2 54843 11 85126327 NM_032943 NP_116561 A/G A137V plus 24701706 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.02 123 by freq 11q14 synaptotagmin-like 2 38833 rs17744245 SYTL2 54843 11 85126327 NM_032943 NP_116561 A/G A137V plus 24701706 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 11q14 synaptotagmin-like 2 38834 rs17744245 SYTL2 54843 11 85126327 NM_032943 NP_116561 A/G A137V plus 24701706 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 11q14 synaptotagmin-like 2 38835 rs17744624 UFD1L 7353 22 17829984 NM_005659 NP_005650 C/G P130A plus 24701832 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 22q11.21 ubiquitin fusion degradation 1-like 38836 rs17744624 UFD1L 7353 22 17829984 NM_005659 NP_005650 C/G P130A plus 24701832 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 22q11.21 ubiquitin fusion degradation 1-like 38837 rs17744624 UFD1L 7353 22 17829984 NM_005659 NP_005650 C/G P130A plus 24701832 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 22q11.21 ubiquitin fusion degradation 1-like 38838 rs17745550 MAP2 4133 2 210385695 NM_002374 NP_002365 A/G M1099V plus 24300641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 2q34-q35 microtubule-associated protein 2 38839 rs17745550 MAP2 4133 2 210385695 NM_002374 NP_002365 A/G M1099V plus 24300641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q34-q35 microtubule-associated protein 2 38840 rs17745550 MAP2 4133 2 210385695 NM_002374 NP_002365 A/G M1099V plus 24300641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q34-q35 microtubule-associated protein 2 38841 rs17745550 MAP2 4133 2 210385695 NM_031846 NP_114034 A/G M1099V plus 24300641 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 2q34-q35 microtubule-associated protein 2 38842 rs17745550 MAP2 4133 2 210385695 NM_031846 NP_114034 A/G M1099V plus 24300641 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q34-q35 microtubule-associated protein 2 38843 rs17745550 MAP2 4133 2 210385695 NM_031846 NP_114034 A/G M1099V plus 24300641 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q34-q35 microtubule-associated protein 2 38844 rs17747505 PLA2G4D 283748 15 40150772 NM_178034 NP_828848 A/G R66W plus 24391106 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38845 rs17747505 PLA2G4D 283748 15 40150772 NM_178034 NP_828848 A/G R66W plus 24391106 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38846 rs17747505 PLA2G4D 283748 15 40150772 NM_178034 NP_828848 A/G R66W plus 24391106 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q14 "phospholipase A2, group IVD (cytosolic)" 38847 rs17747633 AF15Q14 57082 15 38703529 NM_020380 NP_065113 A/G K1259E plus 24489693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 by freq 15q14 AF15q14 protein 38848 rs17747633 AF15Q14 57082 15 38703529 NM_020380 NP_065113 A/G K1259E plus 24489693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q14 AF15q14 protein 38849 rs17747633 AF15Q14 57082 15 38703529 NM_020380 NP_065113 A/G K1259E plus 24489693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 15q14 AF15q14 protein 38850 rs17747633 AF15Q14 57082 15 38703529 NM_144508 NP_653091 A/G K1259E plus 24489693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 by freq 15q14 AF15q14 protein 38851 rs17747633 AF15Q14 57082 15 38703529 NM_144508 NP_653091 A/G K1259E plus 24489693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q14 AF15q14 protein 38852 rs17747633 AF15Q14 57082 15 38703529 NM_144508 NP_653091 A/G K1259E plus 24489693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 15q14 AF15q14 protein 38853 rs17747633 AF15Q14 57082 15 38703529 NM_170589 NP_733468 A/G K1285E plus 24489693 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.48 123 by freq 15q14 AF15q14 protein 38854 rs17747633 AF15Q14 57082 15 38703529 NM_170589 NP_733468 A/G K1285E plus 24489693 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 15q14 AF15q14 protein 38855 rs17747633 AF15Q14 57082 15 38703529 NM_170589 NP_733468 A/G K1285E plus 24489693 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 15q14 AF15q14 protein 38856 rs17750870 LAMA5 3911 20 60337441 NM_005560 NP_005551 C/G G1434A plus 24601606 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.05 123 by freq 20q13.2-q13.3 "laminin, alpha 5" 38857 rs17750870 LAMA5 3911 20 60337441 NM_005560 NP_005551 C/G G1434A plus 24601606 1372 PERLEGEN AFD_AFR_PANEL African American (24) 42 0.02 123 by freq 20q13.2-q13.3 "laminin, alpha 5" 38858 rs17750870 LAMA5 3911 20 60337441 NM_005560 NP_005551 C/G G1434A plus 24601606 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 0.02 123 by freq 20q13.2-q13.3 "laminin, alpha 5" 38859 rs17751061 SF4 57794 19 19274092 NM_172231 NP_757386 C/T R290H plus 24690612 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 19p13.11 splicing factor 4 38860 rs17751061 SF4 57794 19 19274092 NM_172231 NP_757386 C/T R290H plus 24690612 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 19p13.11 splicing factor 4 38861 rs17751061 SF4 57794 19 19274092 NM_172231 NP_757386 C/T R290H plus 24690612 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 19p13.11 splicing factor 4 38862 rs17751301 SYNE2 23224 14 63539581 NM_015180 NP_055995 C/T R1392W plus 24601749 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38863 rs17751301 SYNE2 23224 14 63539581 NM_015180 NP_055995 C/T R1392W plus 24601749 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38864 rs17751301 SYNE2 23224 14 63539581 NM_015180 NP_055995 C/T R1392W plus 24601749 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38865 rs17752285 SERPINA11 256394 14 93978748 XM_170754 XP_170754 C/G T588S plus 24602074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 38866 rs17752285 SERPINA11 256394 14 93978748 XM_170754 XP_170754 C/G T588S plus 24602074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 38867 rs17752285 SERPINA11 256394 14 93978748 XM_170754 XP_170754 C/G T588S plus 24602074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" 38868 rs17755373 PRKWNK1 65125 12 869899 NM_018979 NP_061852 C/T P1823L plus 24692066 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 12p13.3 "protein kinase, lysine deficient 1" 38869 rs17755373 PRKWNK1 65125 12 869899 NM_018979 NP_061852 C/T P1823L plus 24692066 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 12p13.3 "protein kinase, lysine deficient 1" 38870 rs17755373 PRKWNK1 65125 12 869899 NM_018979 NP_061852 C/T P1823L plus 24692066 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 12p13.3 "protein kinase, lysine deficient 1" 38871 rs17757442 CSTL1 128817 20 23369101 NM_138283 NP_612140 A/G R66K plus 24202151 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20p11.21 cystatin-like 1 38872 rs17757442 CSTL1 128817 20 23369101 NM_138283 NP_612140 A/G R66K plus 24202151 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p11.21 cystatin-like 1 38873 rs17757442 CSTL1 128817 20 23369101 NM_138283 NP_612140 A/G R66K plus 24202151 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 20p11.21 cystatin-like 1 38874 rs17759447 OR10S1 219873 11 123353274 XM_166780 XP_166780 A/G A133V plus 24591072 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38875 rs17759447 OR10S1 219873 11 123353274 XM_166780 XP_166780 A/G A133V plus 24591072 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38876 rs17759447 OR10S1 219873 11 123353274 XM_166780 XP_166780 A/G A133V plus 24591072 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38877 rs17759513 OR10S1 219873 11 123353422 XM_166780 XP_166780 C/T G84S plus 24591091 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.23 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38878 rs17759513 OR10S1 219873 11 123353422 XM_166780 XP_166780 C/T G84S plus 24591091 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.15 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38879 rs17759513 OR10S1 219873 11 123353422 XM_166780 XP_166780 C/T G84S plus 24591091 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.13 123 by freq 11q24.1 "olfactory receptor, family 10, subfamily S, member 1" 38880 rs17759929 SLC8A2 6543 19 52652054 XM_375633 XP_375633 C/G V471L plus 24591230 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.02 123 by freq 19q13.3 "solute carrier family 8 (sodium-calcium exchanger), member 2" 38881 rs17759929 SLC8A2 6543 19 52652054 XM_375633 XP_375633 C/G V471L plus 24591230 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 19q13.3 "solute carrier family 8 (sodium-calcium exchanger), member 2" 38882 rs17759929 SLC8A2 6543 19 52652054 XM_375633 XP_375633 C/G V471L plus 24591230 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.02 123 by freq 19q13.3 "solute carrier family 8 (sodium-calcium exchanger), member 2" 38883 rs17761023 AKAP1 8165 17 52537877 NM_003488 NP_003479 C/T A18V plus 24703686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38884 rs17761023 AKAP1 8165 17 52537877 NM_003488 NP_003479 C/T A18V plus 24703686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38885 rs17761023 AKAP1 8165 17 52537877 NM_003488 NP_003479 C/T A18V plus 24703686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38886 rs17761023 AKAP1 8165 17 52537877 NM_139275 NP_644804 C/T A18V plus 24703686 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38887 rs17761023 AKAP1 8165 17 52537877 NM_139275 NP_644804 C/T A18V plus 24703686 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.09 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38888 rs17761023 AKAP1 8165 17 52537877 NM_139275 NP_644804 C/T A18V plus 24703686 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 1 123 by freq 17q21-q23 A kinase (PRKA) anchor protein 1 38889 rs17762338 CUEDC1 404093 17 53306036 NM_017949 NP_060419 C/T R169H plus 24704128 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 17q23.2 CUE domain containing 1 38890 rs17762338 CUEDC1 404093 17 53306036 NM_017949 NP_060419 C/T R169H plus 24704128 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 17q23.2 CUE domain containing 1 38891 rs17762338 CUEDC1 404093 17 53306036 NM_017949 NP_060419 C/T R169H plus 24704128 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q23.2 CUE domain containing 1 38892 rs17762452 GARNL4 23108 17 2830338 NM_015085 NP_055900 A/C L183M plus 24704163 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.27 123 by freq 17p13.3 GTPase activating RANGAP domain-like 4 38893 rs17762452 GARNL4 23108 17 2830338 NM_015085 NP_055900 A/C L183M plus 24704163 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 17p13.3 GTPase activating RANGAP domain-like 4 38894 rs17762452 GARNL4 23108 17 2830338 NM_015085 NP_055900 A/C L183M plus 24704163 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 17p13.3 GTPase activating RANGAP domain-like 4 38895 rs17762463 KCNK10 54207 14 87721715 NM_021161 NP_066984 C/T A512T plus 24592074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38896 rs17762463 KCNK10 54207 14 87721715 NM_021161 NP_066984 C/T A512T plus 24592074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38897 rs17762463 KCNK10 54207 14 87721715 NM_021161 NP_066984 C/T A512T plus 24592074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38898 rs17762463 KCNK10 54207 14 87721715 NM_138317 NP_612190 C/T A517T plus 24592074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38899 rs17762463 KCNK10 54207 14 87721715 NM_138317 NP_612190 C/T A517T plus 24592074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38900 rs17762463 KCNK10 54207 14 87721715 NM_138317 NP_612190 C/T A517T plus 24592074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38901 rs17762463 KCNK10 54207 14 87721715 NM_138318 NP_612191 C/T A517T plus 24592074 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.29 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38902 rs17762463 KCNK10 54207 14 87721715 NM_138318 NP_612191 C/T A517T plus 24592074 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.07 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38903 rs17762463 KCNK10 54207 14 87721715 NM_138318 NP_612191 C/T A517T plus 24592074 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q31 "potassium channel, subfamily K, member 10" 38904 rs17762735 OR1A1 8383 17 3066361 NM_014565 NP_055380 A/G V233M plus 24704261 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.17 123 by freq 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 38905 rs17762735 OR1A1 8383 17 3066361 NM_014565 NP_055380 A/G V233M plus 24704261 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 38906 rs17762735 OR1A1 8383 17 3066361 NM_014565 NP_055380 A/G V233M plus 24704261 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17p13.3 "olfactory receptor, family 1, subfamily A, member 1" 38907 rs17763658 IMP5 162540 17 41278420 NM_175882 NP_787078 A/G R123Q plus 24592469 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 17q21.31 intramembrane protease 5 38908 rs17763658 IMP5 162540 17 41278420 NM_175882 NP_787078 A/G R123Q plus 24592469 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.31 intramembrane protease 5 38909 rs17763658 IMP5 162540 17 41278420 NM_175882 NP_787078 A/G R123Q plus 24592469 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 17q21.31 intramembrane protease 5 38910 rs17766354 SYNE2 23224 14 63674345 NM_015180 NP_055995 C/G P4911A plus 24705464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38911 rs17766354 SYNE2 23224 14 63674345 NM_015180 NP_055995 C/G P4911A plus 24705464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38912 rs17766354 SYNE2 23224 14 63674345 NM_015180 NP_055995 C/G P4911A plus 24705464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38913 rs17766354 SYNE2 23224 14 63674345 NM_182914 NP_878918 C/G P1297A plus 24705464 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38914 rs17766354 SYNE2 23224 14 63674345 NM_182914 NP_878918 C/G P1297A plus 24705464 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38915 rs17766354 SYNE2 23224 14 63674345 NM_182914 NP_878918 C/G P1297A plus 24705464 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q23.2 "spectrin repeat containing, nuclear envelope 2" 38916 rs17768654 TTC6 115669 14 37343705 XM_056434 XP_056434 A/G A98T plus 24605684 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q13.3 tetratricopeptide repeat domain 6 38917 rs17768654 TTC6 115669 14 37343705 XM_056434 XP_056434 A/G A98T plus 24605684 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q13.3 tetratricopeptide repeat domain 6 38918 rs17768654 TTC6 115669 14 37343705 XM_056434 XP_056434 A/G A98T plus 24605684 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q13.3 tetratricopeptide repeat domain 6 38919 rs17768776 ZFYVE28 57732 4 2273490 XM_035371 XP_035371 C/T S603N plus 24302936 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.15 123 by freq 4p16.3 "zinc finger, FYVE domain containing 28" 38920 rs17768776 ZFYVE28 57732 4 2273490 XM_035371 XP_035371 C/T S603N plus 24302936 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 4p16.3 "zinc finger, FYVE domain containing 28" 38921 rs17768776 ZFYVE28 57732 4 2273490 XM_035371 XP_035371 C/T S603N plus 24302936 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4p16.3 "zinc finger, FYVE domain containing 28" 38922 rs17773251 CSNK1A1L 122011 13 36576884 NM_145203 NP_660204 C/G R170S plus 24593846 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.11 123 by freq 13q13.2 "casein kinase 1, alpha 1-like" 38923 rs17773251 CSNK1A1L 122011 13 36576884 NM_145203 NP_660204 C/G R170S plus 24593846 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 0.05 123 by freq 13q13.2 "casein kinase 1, alpha 1-like" 38924 rs17773251 CSNK1A1L 122011 13 36576884 NM_145203 NP_660204 C/G R170S plus 24593846 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 13q13.2 "casein kinase 1, alpha 1-like" 38925 rs17775319 SPINK5 11005 5 147460300 NM_006846 NP_006837 A/G V395M plus 24194711 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.46 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38926 rs17775319 SPINK5 11005 5 147460300 NM_006846 NP_006837 A/G V395M plus 24194711 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.22 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38927 rs17775319 SPINK5 11005 5 147460300 NM_006846 NP_006837 A/G V395M plus 24194711 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.48 123 by freq 5q32 "serine protease inhibitor, Kazal type 5" 38928 rs17776919 MRPL27 51264 17 45802917 NM_016504 NP_057588 C/T T24A plus 24595069 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38929 rs17776919 MRPL27 51264 17 45802917 NM_016504 NP_057588 C/T T24A plus 24595069 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38930 rs17776919 MRPL27 51264 17 45802917 NM_016504 NP_057588 C/T T24A plus 24595069 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38931 rs17776919 MRPL27 51264 17 45802917 NM_148571 NP_683412 C/T T24A plus 24595069 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38932 rs17776919 MRPL27 51264 17 45802917 NM_148571 NP_683412 C/T T24A plus 24595069 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38933 rs17776919 MRPL27 51264 17 45802917 NM_148571 NP_683412 C/T T24A plus 24595069 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 17q21.3-q22 mitochondrial ribosomal protein L27 38934 rs17778003 ZNF406 57623 8 135738992 NM_020863 NP_065914 C/T G64R plus 24494351 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.21 123 by freq 8q24.22 zinc finger protein 406 38935 rs17778003 ZNF406 57623 8 135738992 NM_020863 NP_065914 C/T G64R plus 24494351 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 8q24.22 zinc finger protein 406 38936 rs17778003 ZNF406 57623 8 135738992 NM_020863 NP_065914 C/T G64R plus 24494351 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q24.22 zinc finger protein 406 38937 rs17780143 MAP4K5 11183 14 49971518 NM_006575 NP_006566 A/G T633M plus 24596146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38938 rs17780143 MAP4K5 11183 14 49971518 NM_006575 NP_006566 A/G T633M plus 24596146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38939 rs17780143 MAP4K5 11183 14 49971518 NM_006575 NP_006566 A/G T633M plus 24596146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38940 rs17780143 MAP4K5 11183 14 49971518 NM_198794 NP_942089 A/G T633M plus 24596146 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38941 rs17780143 MAP4K5 11183 14 49971518 NM_198794 NP_942089 A/G T633M plus 24596146 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38942 rs17780143 MAP4K5 11183 14 49971518 NM_198794 NP_942089 A/G T633M plus 24596146 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.06 123 by freq 14q11.2-q21 mitogen-activated protein kinase kinase kinase kinase 5 38943 rs17781919 NUMB 8650 14 72813211 NM_003744 NP_003735 C/T G584D plus 24606471 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 14q24.3 numb homolog (Drosophila) 38944 rs17781919 NUMB 8650 14 72813211 NM_003744 NP_003735 C/T G584D plus 24606471 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 14q24.3 numb homolog (Drosophila) 38945 rs17781919 NUMB 8650 14 72813211 NM_003744 NP_003735 C/T G584D plus 24606471 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.3 numb homolog (Drosophila) 38946 rs17782078 ATRN 8455 20 3489382 NM_012070 NP_036202 C/T I352T plus 24495712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20p13 attractin 38947 rs17782078 ATRN 8455 20 3489382 NM_012070 NP_036202 C/T I352T plus 24495712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20p13 attractin 38948 rs17782078 ATRN 8455 20 3489382 NM_012070 NP_036202 C/T I352T plus 24495712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p13 attractin 38949 rs17782078 ATRN 8455 20 3489382 NM_139321 NP_647537 C/T I426T plus 24495712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20p13 attractin 38950 rs17782078 ATRN 8455 20 3489382 NM_139321 NP_647537 C/T I426T plus 24495712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20p13 attractin 38951 rs17782078 ATRN 8455 20 3489382 NM_139321 NP_647537 C/T I426T plus 24495712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p13 attractin 38952 rs17782078 ATRN 8455 20 3489382 NM_139322 NP_647538 C/T I426T plus 24495712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 20p13 attractin 38953 rs17782078 ATRN 8455 20 3489382 NM_139322 NP_647538 C/T I426T plus 24495712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 20p13 attractin 38954 rs17782078 ATRN 8455 20 3489382 NM_139322 NP_647538 C/T I426T plus 24495712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 20p13 attractin 38955 rs17782413 SERPINB7 8710 18 59622503 NM_003784 NP_003775 A/G R266Q plus 24495822 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.18 123 by freq 18q22.1 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7" 38956 rs17782413 SERPINB7 8710 18 59622503 NM_003784 NP_003775 A/G R266Q plus 24495822 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.09 123 by freq 18q22.1 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7" 38957 rs17782413 SERPINB7 8710 18 59622503 NM_003784 NP_003775 A/G R266Q plus 24495822 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.15 123 by freq 18q22.1 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7" 38958 rs17782839 MLH3 27030 14 74583216 NM_014381 NP_055196 A/G S966P plus 24606778 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.04 123 by freq 14q24.3 mutL homolog 3 (E. coli) 38959 rs17782839 MLH3 27030 14 74583216 NM_014381 NP_055196 A/G S966P plus 24606778 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 14q24.3 mutL homolog 3 (E. coli) 38960 rs17782839 MLH3 27030 14 74583216 NM_014381 NP_055196 A/G S966P plus 24606778 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q24.3 mutL homolog 3 (E. coli) 38961 rs17783344 GCA 25801 2 163034400 NM_012198 NP_036330 G/T S80A plus 24296225 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 2q24.3 "grancalcin, EF-hand calcium binding protein" 38962 rs17783344 GCA 25801 2 163034400 NM_012198 NP_036330 G/T S80A plus 24296225 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q24.3 "grancalcin, EF-hand calcium binding protein" 38963 rs17783344 GCA 25801 2 163034400 NM_012198 NP_036330 G/T S80A plus 24296225 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q24.3 "grancalcin, EF-hand calcium binding protein" 38964 rs17791931 CYP2A6 1548 19 46046373 NM_000762 NP_000753 A/T L160H plus 24596427 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 38965 rs17791931 CYP2A6 1548 19 46046373 NM_000762 NP_000753 A/T L160H plus 24596427 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 1 123 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 38966 rs17791931 CYP2A6 1548 19 46046373 NM_000762 NP_000753 A/T L160H plus 24596427 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 19q13.2 "cytochrome P450, family 2, subfamily A, polypeptide 6" 38967 rs17800159 DSC1 1823 18 26974145 NM_004948 NP_004939 C/T V460I plus 24197496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 18q12.1 desmocollin 1 38968 rs17800159 DSC1 1823 18 26974145 NM_004948 NP_004939 C/T V460I plus 24197496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q12.1 desmocollin 1 38969 rs17800159 DSC1 1823 18 26974145 NM_004948 NP_004939 C/T V460I plus 24197496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 by freq 18q12.1 desmocollin 1 38970 rs17800159 DSC1 1823 18 26974145 NM_024421 NP_077739 C/T V460I plus 24197496 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 18q12.1 desmocollin 1 38971 rs17800159 DSC1 1823 18 26974145 NM_024421 NP_077739 C/T V460I plus 24197496 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 18q12.1 desmocollin 1 38972 rs17800159 DSC1 1823 18 26974145 NM_024421 NP_077739 C/T V460I plus 24197496 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.43 123 by freq 18q12.1 desmocollin 1 38973 rs17800727 RBL2 5934 16 52038511 NM_005611 NP_005602 A/G Y210C plus 24409521 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.19 123 by freq 16q12.2 retinoblastoma-like 2 (p130) 38974 rs17800727 RBL2 5934 16 52038511 NM_005611 NP_005602 A/G Y210C plus 24409521 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 16q12.2 retinoblastoma-like 2 (p130) 38975 rs17800727 RBL2 5934 16 52038511 NM_005611 NP_005602 A/G Y210C plus 24409521 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.2 retinoblastoma-like 2 (p130) 38976 rs17801309 EPHA3 2042 3 89604354 NM_005233 NP_005224 A/G R914H plus 24300376 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 3p11.2 EphA3 38977 rs17801309 EPHA3 2042 3 89604354 NM_005233 NP_005224 A/G R914H plus 24300376 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 3p11.2 EphA3 38978 rs17801309 EPHA3 2042 3 89604354 NM_005233 NP_005224 A/G R914H plus 24300376 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 3p11.2 EphA3 38979 rs17802155 SFTPD 6441 10 81687848 NM_003019 NP_003010 A/T S290T plus 24409997 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 38980 rs17802155 SFTPD 6441 10 81687848 NM_003019 NP_003010 A/T S290T plus 24409997 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 38981 rs17802155 SFTPD 6441 10 81687848 NM_003019 NP_003010 A/T S290T plus 24409997 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 10q22.2-q23.1 "surfactant, pulmonary-associated protein D" 38982 rs17803441 MFTC 81034 8 104486221 NM_030780 NP_110407 C/T R117H plus 24510764 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.07 123 by freq 8q22.3 mitochondrial folate transporter/carrier 38983 rs17803441 MFTC 81034 8 104486221 NM_030780 NP_110407 C/T R117H plus 24510764 1372 PERLEGEN AFD_AFR_PANEL African American (24) 40 0.03 123 by freq 8q22.3 mitochondrial folate transporter/carrier 38984 rs17803441 MFTC 81034 8 104486221 NM_030780 NP_110407 C/T R117H plus 24510764 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q22.3 mitochondrial folate transporter/carrier 38985 rs17804499 RASSF6 166824 4 74807384 NM_177532 NP_803876 C/G A274G plus 24309355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38986 rs17804499 RASSF6 166824 4 74807384 NM_177532 NP_803876 C/G A274G plus 24309355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38987 rs17804499 RASSF6 166824 4 74807384 NM_177532 NP_803876 C/G A274G plus 24309355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38988 rs17804499 RASSF6 166824 4 74807384 NM_201431 NP_958834 C/G A306G plus 24309355 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38989 rs17804499 RASSF6 166824 4 74807384 NM_201431 NP_958834 C/G A306G plus 24309355 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38990 rs17804499 RASSF6 166824 4 74807384 NM_201431 NP_958834 C/G A306G plus 24309355 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4q21.21 Ras association (RalGDS/AF-6) domain family 6 38991 rs17805544 TXNDC2 84203 18 9877936 NM_032243 NP_115619 C/G R420T plus 24599145 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38992 rs17805544 TXNDC2 84203 18 9877936 NM_032243 NP_115619 C/G R420T plus 24599145 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38993 rs17805544 TXNDC2 84203 18 9877936 NM_032243 NP_115619 C/G R420T plus 24599145 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 18p11.31-p11.2 thioredoxin domain containing 2 (spermatozoa) 38994 rs17807673 SEC23B 10483 20 18461372 NM_006363 NP_006354 C/T P433L plus 24599848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 38995 rs17807673 SEC23B 10483 20 18461372 NM_006363 NP_006354 C/T P433L plus 24599848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 38996 rs17807673 SEC23B 10483 20 18461372 NM_006363 NP_006354 C/T P433L plus 24599848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 38997 rs17807673 SEC23B 10483 20 18461372 NM_032985 NP_116780 C/T P433L plus 24599848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 38998 rs17807673 SEC23B 10483 20 18461372 NM_032985 NP_116780 C/T P433L plus 24599848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 38999 rs17807673 SEC23B 10483 20 18461372 NM_032985 NP_116780 C/T P433L plus 24599848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 39000 rs17807673 SEC23B 10483 20 18461372 NM_032986 NP_116781 C/T P433L plus 24599848 1371 PERLEGEN AFD_EUR_PANEL European American (24) 44 0.11 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 39001 rs17807673 SEC23B 10483 20 18461372 NM_032986 NP_116781 C/T P433L plus 24599848 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 39002 rs17807673 SEC23B 10483 20 18461372 NM_032986 NP_116781 C/T P433L plus 24599848 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 44 1 123 by freq 20p11.23 Sec23 homolog B (S. cerevisiae) 39003 rs17807723 RHCG 51458 15 87824562 NM_016321 NP_057405 A/G R202C plus 24512194 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 15q25 "Rhesus blood group, C glycoprotein" 39004 rs17807723 RHCG 51458 15 87824562 NM_016321 NP_057405 A/G R202C plus 24512194 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 15q25 "Rhesus blood group, C glycoprotein" 39005 rs17807723 RHCG 51458 15 87824562 NM_016321 NP_057405 A/G R202C plus 24512194 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.02 123 by freq 15q25 "Rhesus blood group, C glycoprotein" 39006 rs17811673 PAICS 10606 4 57155833 NM_006452 NP_006443 A/C K201N plus 24401602 1371 PERLEGEN AFD_EUR_PANEL European American (24) 42 0.05 123 by freq 4pter-q21 "phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase" 39007 rs17811673 PAICS 10606 4 57155833 NM_006452 NP_006443 A/C K201N plus 24401602 1372 PERLEGEN AFD_AFR_PANEL African American (24) 38 1 123 by freq 4pter-q21 "phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase" 39008 rs17811673 PAICS 10606 4 57155833 NM_006452 NP_006443 A/C K201N plus 24401602 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 4pter-q21 "phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase" 39009 rs17812699 C1QTNF6 114904 22 35903152 NM_031910 NP_114116 A/G P138L plus 24601528 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39010 rs17812699 C1QTNF6 114904 22 35903152 NM_031910 NP_114116 A/G P138L plus 24601528 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39011 rs17812699 C1QTNF6 114904 22 35903152 NM_031910 NP_114116 A/G P138L plus 24601528 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39012 rs17812699 C1QTNF6 114904 22 35903152 NM_182486 NP_872292 A/G P138L plus 24601528 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39013 rs17812699 C1QTNF6 114904 22 35903152 NM_182486 NP_872292 A/G P138L plus 24601528 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39014 rs17812699 C1QTNF6 114904 22 35903152 NM_182486 NP_872292 A/G P138L plus 24601528 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 46 0.04 123 by freq 22q13.1 C1q and tumor necrosis factor related protein 6 39015 rs17813964 AXOT 64844 2 160425224 NM_022826 NP_073737 C/G T100S plus 24312513 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 2q24.2 axotrophin 39016 rs17813964 AXOT 64844 2 160425224 NM_022826 NP_073737 C/G T100S plus 24312513 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 0.02 123 by freq 2q24.2 axotrophin 39017 rs17813964 AXOT 64844 2 160425224 NM_022826 NP_073737 C/G T100S plus 24312513 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q24.2 axotrophin 39018 rs17815774 TRPM1 4308 15 29121654 NM_002420 NP_002411 C/T V535M plus 24612287 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 39019 rs17815774 TRPM1 4308 15 29121654 NM_002420 NP_002411 C/T V535M plus 24612287 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 39020 rs17815774 TRPM1 4308 15 29121654 NM_002420 NP_002411 C/T V535M plus 24612287 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q13-q14 "transient receptor potential cation channel, subfamily M, member 1" 39021 rs17818842 TAF2 6873 8 120913963 NM_003184 NP_003175 A/G P8L plus 24411904 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.17 123 by freq 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 39022 rs17818842 TAF2 6873 8 120913963 NM_003184 NP_003175 A/G P8L plus 24411904 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.11 123 by freq 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 39023 rs17818842 TAF2 6873 8 120913963 NM_003184 NP_003175 A/G P8L plus 24411904 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q24.12 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 39024 rs17819126 DYX1C1 161582 15 53577202 NM_130810 NP_570722 C/T V91I plus 24613398 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 39025 rs17819126 DYX1C1 161582 15 53577202 NM_130810 NP_570722 C/T V91I plus 24613398 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 39026 rs17819126 DYX1C1 161582 15 53577202 NM_130810 NP_570722 C/T V91I plus 24613398 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 15q21.1 dyslexia susceptibility 1 candidate 1 39027 rs17822471 ABCC11 85320 16 46799880 NM_032583 NP_115972 A/G T546M plus 24501910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39028 rs17822471 ABCC11 85320 16 46799880 NM_032583 NP_115972 A/G T546M plus 24501910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39029 rs17822471 ABCC11 85320 16 46799880 NM_032583 NP_115972 A/G T546M plus 24501910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39030 rs17822471 ABCC11 85320 16 46799880 NM_033151 NP_149163 A/G T546M plus 24501910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39031 rs17822471 ABCC11 85320 16 46799880 NM_033151 NP_149163 A/G T546M plus 24501910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39032 rs17822471 ABCC11 85320 16 46799880 NM_033151 NP_149163 A/G T546M plus 24501910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39033 rs17822471 ABCC11 85320 16 46799880 NM_145186 NP_660187 A/G T546M plus 24501910 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39034 rs17822471 ABCC11 85320 16 46799880 NM_145186 NP_660187 A/G T546M plus 24501910 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39035 rs17822471 ABCC11 85320 16 46799880 NM_145186 NP_660187 A/G T546M plus 24501910 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39036 rs17822931 ABCC11 85320 16 46815699 NM_032583 NP_115972 C/T G180R plus 24502061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39037 rs17822931 ABCC11 85320 16 46815699 NM_032583 NP_115972 C/T G180R plus 24502061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39038 rs17822931 ABCC11 85320 16 46815699 NM_032583 NP_115972 C/T G180R plus 24502061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39039 rs17822931 ABCC11 85320 16 46815699 NM_033151 NP_149163 C/T G180R plus 24502061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39040 rs17822931 ABCC11 85320 16 46815699 NM_033151 NP_149163 C/T G180R plus 24502061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39041 rs17822931 ABCC11 85320 16 46815699 NM_033151 NP_149163 C/T G180R plus 24502061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39042 rs17822931 ABCC11 85320 16 46815699 NM_145186 NP_660187 C/T G180R plus 24502061 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.09 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39043 rs17822931 ABCC11 85320 16 46815699 NM_145186 NP_660187 C/T G180R plus 24502061 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39044 rs17822931 ABCC11 85320 16 46815699 NM_145186 NP_660187 C/T G180R plus 24502061 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.08 123 by freq 16q12.1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 11" 39045 rs17825668 ALG8 79053 11 77492707 NM_024079 NP_076984 A/G I439T plus 24602205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 11pter-p15.5 "asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)" 39046 rs17825668 ALG8 79053 11 77492707 NM_024079 NP_076984 A/G I439T plus 24602205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.02 123 by freq 11pter-p15.5 "asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)" 39047 rs17825668 ALG8 79053 11 77492707 NM_024079 NP_076984 A/G I439T plus 24602205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 11pter-p15.5 "asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)" 39048 rs17826595 SERPINA13 388007 14 94179586 NM_207378 NP_997261 A/G R204H plus 24602512 1371 PERLEGEN AFD_EUR_PANEL European American (24) 46 0.26 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 39049 rs17826595 SERPINA13 388007 14 94179586 NM_207378 NP_997261 A/G R204H plus 24602512 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 39050 rs17826595 SERPINA13 388007 14 94179586 NM_207378 NP_997261 A/G R204H plus 24602512 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 14q32.2 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13" 39051 rs17827158 LY75 4065 2 160501857 NM_002349 NP_002340 C/T K1347R plus 24313272 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 2q24 lymphocyte antigen 75 39052 rs17827158 LY75 4065 2 160501857 NM_002349 NP_002340 C/T K1347R plus 24313272 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 2q24 lymphocyte antigen 75 39053 rs17827158 LY75 4065 2 160501857 NM_002349 NP_002340 C/T K1347R plus 24313272 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 2q24 lymphocyte antigen 75 39054 rs17831160 MATN2 4147 8 99115042 NM_002380 NP_002371 A/G V932I plus 24504810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8q22 matrilin 2 39055 rs17831160 MATN2 4147 8 99115042 NM_002380 NP_002371 A/G V932I plus 24504810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8q22 matrilin 2 39056 rs17831160 MATN2 4147 8 99115042 NM_002380 NP_002371 A/G V932I plus 24504810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q22 matrilin 2 39057 rs17831160 MATN2 4147 8 99115042 NM_030583 NP_085072 A/G V913I plus 24504810 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.06 123 by freq 8q22 matrilin 2 39058 rs17831160 MATN2 4147 8 99115042 NM_030583 NP_085072 A/G V913I plus 24504810 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 8q22 matrilin 2 39059 rs17831160 MATN2 4147 8 99115042 NM_030583 NP_085072 A/G V913I plus 24504810 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 8q22 matrilin 2 39060 rs17831525 NID2 22795 14 51578813 NM_007361 NP_031387 A/G P529S plus 24615712 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.04 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 39061 rs17831525 NID2 22795 14 51578813 NM_007361 NP_031387 A/G P529S plus 24615712 1372 PERLEGEN AFD_AFR_PANEL African American (24) 44 1 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 39062 rs17831525 NID2 22795 14 51578813 NM_007361 NP_031387 A/G P529S plus 24615712 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 40 1 123 by freq 14q21-q22 nidogen 2 (osteonidogen) 39063 rs17832998 DACT1 51339 14 58182485 NM_016651 NP_057735 C/T A464V plus 24616205 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 39064 rs17832998 DACT1 51339 14 58182485 NM_016651 NP_057735 C/T A464V plus 24616205 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.2 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 39065 rs17832998 DACT1 51339 14 58182485 NM_016651 NP_057735 C/T A464V plus 24616205 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.31 123 by freq 14q23.1 "dapper homolog 1, antagonist of beta-catenin (xenopus)" 39066 rs17833992 COL14A1 7373 8 121367337 XM_044622 XP_044622 C/G V1315L plus 24415120 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.13 123 by freq 8q23 "collagen, type XIV, alpha 1 (undulin)" 39067 rs17833992 COL14A1 7373 8 121367337 XM_044622 XP_044622 C/G V1315L plus 24415120 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.04 123 by freq 8q23 "collagen, type XIV, alpha 1 (undulin)" 39068 rs17833992 COL14A1 7373 8 121367337 XM_044622 XP_044622 C/G V1315L plus 24415120 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.04 123 by freq 8q23 "collagen, type XIV, alpha 1 (undulin)" 39069 rs17838158 GSTM4 2948 1 109913686 NM_000850 NP_000841 C/T A160V plus 24815410 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 1p13.3 glutathione S-transferase M4 39070 rs17838158 GSTM4 2948 1 109913686 NM_147148 NP_671489 C/T A160V plus 24815410 1303 SEQUENOM CEPH CEPH (92) 184 0.16 123 by freq 1p13.3 glutathione S-transferase M4 39071 rs17839493 ITGAX 3687 16 31298621 NM_000887 NP_000878 C/T F971L plus 23763675 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 1 123 by freq 16p11.2 "integrin, alpha X (antigen CD11C (p150), alpha polypeptide)" 39072 rs17839493 ITGAX 3687 16 31298621 NM_000887 NP_000878 C/T F971L plus 23763675 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.17 123 by freq 16p11.2 "integrin, alpha X (antigen CD11C (p150), alpha polypeptide)" 39073 rs17839493 ITGAX 3687 16 31298621 NM_000887 NP_000878 C/T F971L plus 23763675 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 1 123 by freq 16p11.2 "integrin, alpha X (antigen CD11C (p150), alpha polypeptide)" 39074 rs17840089 POU5F1 5460 6 31240388 NM_002701 NP_002692 C/T T351I minus 24820537 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 6p21.31 "POU domain, class 5, transcription factor 1" 39075 rs17840089 POU5F1 5460 6 31240388 NM_203289 NP_976034 C/T T256I minus 24820537 1303 SEQUENOM CEPH CEPH (92) 184 0.14 123 by freq 6p21.31 "POU domain, class 5, transcription factor 1" 39076 rs17841256 NTAN1 123803 16 15039463 NM_173474 NP_775745 A/G S287P plus 24097366 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.35 123 by freq 16p13.13 N-terminal asparagine amidase 39077 rs17841256 NTAN1 123803 16 15039463 NM_173474 NP_775745 A/G S287P plus 24097366 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 0.13 123 by freq 16p13.13 N-terminal asparagine amidase 39078 rs17841256 NTAN1 123803 16 15039463 NM_173474 NP_775745 A/G S287P plus 24097366 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.4 123 by freq 16p13.13 N-terminal asparagine amidase 39079 rs17841292 EEF2K 29904 16 22144774 NM_013302 NP_037434 C/G P75A plus 23961717 1371 PERLEGEN AFD_EUR_PANEL European American (24) 48 0.1 123 by freq 16p12.3 elongation factor-2 kinase 39080 rs17841292 EEF2K 29904 16 22144774 NM_013302 NP_037434 C/G P75A plus 23961717 1372 PERLEGEN AFD_AFR_PANEL African American (24) 46 1 123 by freq 16p12.3 elongation factor-2 kinase 39081 rs17841292 EEF2K 29904 16 22144774 NM_013302 NP_037434 C/G P75A plus 23961717 1373 PERLEGEN AFD_CHN_PANEL Chinese (24) 48 0.23 123 by freq 16p12.3 elongation factor-2 kinase 39082 rs17841952 HLA-DRB3 3125 6 32657518 NM_022555 NP_072049 A/G S149N minus 24819774 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 6p21.3 "major histocompatibility complex, class II, DR beta 3" 39083 rs17841952 HLA-DRB1 3123 6 32657518 NM_002124 NP_002115 A/G N149S minus 24819774 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 6p21.3 "major histocompatibility complex, class II, DR beta 1" 39084 rs17841952 HLA-DRB4 3126 6 32657518 NM_021983 NP_068818 A/G N149S minus 24819774 1303 SEQUENOM CEPH CEPH (92) 184 0.39 123 by freq 6p21.3 "major histocompatibility complex, class II, DR beta 4" 39085 rs17842463 SULT2B1 6820 19 53794411 NM_004605 NP_004596 C/T P330L plus 28447027 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1" 39086 rs17842463 SULT2B1 6820 19 53794411 NM_177973 NP_814444 C/T P345L plus 28447027 1166 PHARMGKB_PPII PA128747821 240 0.01 123 by freq 19q13.3 "sulfotransferase family, cytosolic, 2B, member 1"